Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/trans-proteomic-pipeline.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1641300309.142272/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i5azexnq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i5azexnq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1b672fb2fe454707accbd16931c14467', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1641300309.142272/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i5azexnq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/trans-proteomic-pipeline.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1630454400 Wrote: /builddir/build/SRPMS/trans-proteomic-pipeline-6.0.0-1.fc36.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/trans-proteomic-pipeline.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1641300309.142272/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i5azexnq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i5azexnq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3a0fafb31d33474695ad53c22bf6e51a', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1641300309.142272/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i5azexnq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/trans-proteomic-pipeline.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1630454400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.KnTGHn + umask 022 + cd /builddir/build/BUILD + ls ========== + echo ========== + cd /builddir/build/BUILD + rm -rf release_6-0-0 + /usr/bin/gzip -dc /builddir/build/SOURCES/TPP_6.0.0-src.tgz + /usr/bin/tar -xvvof - drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:24 release_6-0-0/ -rw-rw-r-- lmendoza/moritz 487 2021-08-11 07:17 release_6-0-0/VERSION.mk drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/html/ -rw-rw-r-- lmendoza/moritz 5737 2021-08-11 00:52 release_6-0-0/html/index.html -rw-rw-r-- lmendoza/moritz 5071 2021-06-30 22:34 release_6-0-0/html/lorikeet.html drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/html/js/ -rw-rw-r-- lmendoza/moritz 10015 2021-04-20 05:21 release_6-0-0/html/js/unimod.js -rw-rw-r-- lmendoza/moritz 8070 2021-04-20 01:01 release_6-0-0/html/js/asap.js -rw-rw-r-- lmendoza/moritz 8911 2021-04-20 01:01 release_6-0-0/html/js/ppsx.js -rw-rw-r-- lmendoza/moritz 14581 2021-04-20 01:01 release_6-0-0/html/js/tpp.js -rw-rw-r-- lmendoza/moritz 14782 2021-01-20 07:24 release_6-0-0/html/js/tppcel.js -rw-rw-r-- lmendoza/moritz 10594 2021-01-19 02:00 release_6-0-0/html/js/protxml.js -rw-rw-r-- lmendoza/moritz 18914 2020-10-09 21:26 release_6-0-0/html/js/plotpp.js -rw-rw-r-- lmendoza/moritz 6237 2020-10-09 05:37 release_6-0-0/html/js/jquery.flot.categories.js -rw-rw-r-- lmendoza/moritz 8034 2020-10-09 05:37 release_6-0-0/html/js/jquery.flot.stack.js -rw-rw-r-- lmendoza/moritz 34671 2020-05-11 02:56 release_6-0-0/html/js/proteographer.js -rwxrwxr-x lmendoza/moritz 19542 2017-01-31 01:37 release_6-0-0/html/js/jquery.flot.axislabels.js -rw-rw-r-- lmendoza/moritz 12614 2015-07-27 21:43 release_6-0-0/html/js/jquery.flot.errorbars.js drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/html/css/ -rw-rw-r-- lmendoza/moritz 12499 2021-04-20 01:01 release_6-0-0/html/css/tpp.css -rw-rw-r-- lmendoza/moritz 5006 2020-11-17 08:26 release_6-0-0/html/css/protxml.css -rw-rw-r-- lmendoza/moritz 1747 2020-10-09 21:26 release_6-0-0/html/css/plotpp.css -rw-rw-r-- lmendoza/moritz 3095 2020-06-08 07:29 release_6-0-0/html/css/asap.css -rw-rw-r-- lmendoza/moritz 4214 2020-05-10 11:36 release_6-0-0/html/css/proteographer.css -rw-rw-r-- lmendoza/moritz 411 2020-05-09 09:33 release_6-0-0/html/css/tppcel.css -rw-rw-r-- lmendoza/moritz 2827 2020-05-05 19:45 release_6-0-0/html/css/pep3d.css drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/html/ref/ -rw-rw-r-- lmendoza/moritz 294068 2021-03-09 08:54 release_6-0-0/html/ref/unimod.json -rw-rw-r-- lmendoza/moritz 8387502 2020-04-30 04:38 release_6-0-0/html/ref/godefs.json -rw-rw-r-- lmendoza/moritz 42890786 2020-04-30 04:38 release_6-0-0/html/ref/terms_bp.json -rw-rw-r-- lmendoza/moritz 20558557 2020-04-30 04:38 release_6-0-0/html/ref/terms_cc.json -rw-rw-r-- lmendoza/moritz 39496786 2020-04-30 04:38 release_6-0-0/html/ref/terms_mf.json -rw-rw-r-- lmendoza/moritz 3389 2021-02-25 05:34 release_6-0-0/html/TPPcel.html -rw-rw-r-- lmendoza/moritz 2894 2021-01-08 11:09 release_6-0-0/html/PPSX.html -rw-rw-r-- lmendoza/moritz 2923 2021-01-08 11:03 release_6-0-0/html/ploTPP.html -rw-rw-r-- lmendoza/moritz 5265 2020-05-11 02:56 release_6-0-0/html/PG.html -rw-rw-r-- lmendoza/moritz 2787 2020-04-30 04:38 release_6-0-0/html/Makefile -rw-rw-r-- lmendoza/moritz 5325 2015-09-11 05:12 release_6-0-0/html/post_to_spectrast.html drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/html/images/ drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/html/images/help/ -rw-rw-r-- lmendoza/moritz 14434 2015-09-06 06:00 release_6-0-0/html/images/help/pep-proph.jpg -rw-rw-r-- lmendoza/moritz 134077 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help1.png -rw-rw-r-- lmendoza/moritz 164066 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help10.png -rw-rw-r-- lmendoza/moritz 169315 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help11.png -rw-rw-r-- lmendoza/moritz 77036 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help12.png -rw-rw-r-- lmendoza/moritz 42279 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help13.png -rw-rw-r-- lmendoza/moritz 92236 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help2.png -rw-rw-r-- lmendoza/moritz 163656 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help3.png -rw-rw-r-- lmendoza/moritz 133658 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help4.png -rw-rw-r-- lmendoza/moritz 154267 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help5.png -rw-rw-r-- lmendoza/moritz 133912 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help6.png -rw-rw-r-- lmendoza/moritz 133528 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help7.png -rw-rw-r-- lmendoza/moritz 167937 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help8.png -rw-rw-r-- lmendoza/moritz 169152 2015-09-06 06:00 release_6-0-0/html/images/help/pipeline_help9.png -rw-rw-r-- lmendoza/moritz 13996 2015-09-06 06:00 release_6-0-0/html/images/help/prot-proph.jpg -rw-rw-r-- lmendoza/moritz 70215 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help.png -rw-rw-r-- lmendoza/moritz 140029 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help00.png -rw-rw-r-- lmendoza/moritz 121735 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help01.png -rw-rw-r-- lmendoza/moritz 86610 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help010.png -rw-rw-r-- lmendoza/moritz 75732 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help0115.png -rw-rw-r-- lmendoza/moritz 134923 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help02.png -rw-rw-r-- lmendoza/moritz 130519 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help03.png -rw-rw-r-- lmendoza/moritz 126297 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help04.png -rw-rw-r-- lmendoza/moritz 130231 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help05.png -rw-rw-r-- lmendoza/moritz 131189 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help06.png -rw-rw-r-- lmendoza/moritz 143203 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help07.png -rw-rw-r-- lmendoza/moritz 121955 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help08.png -rw-rw-r-- lmendoza/moritz 134821 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help085.png -rw-rw-r-- lmendoza/moritz 163611 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help086.png -rw-rw-r-- lmendoza/moritz 108454 2015-09-06 06:00 release_6-0-0/html/images/help/protxml_help087.png -rw-rw-r-- lmendoza/moritz 13996 2015-09-06 05:32 release_6-0-0/html/images/prot-proph.jpg -rw-rw-r-- lmendoza/moritz 3774 2015-03-24 02:36 release_6-0-0/html/images/petunia.ico -rw-rw-r-- lmendoza/moritz 4710 2015-03-24 02:36 release_6-0-0/html/images/tpp.ico -rw-rw-r-- lmendoza/moritz 340 2015-01-12 05:58 release_6-0-0/html/images/pa_tiny.png -rw-rw-r-- lmendoza/moritz 14434 2015-01-12 05:58 release_6-0-0/html/images/pep-proph.jpg -rw-rw-r-- lmendoza/moritz 3524 2015-01-12 05:58 release_6-0-0/html/images/qMark.png -rw-rw-r-- lmendoza/moritz 304 2007-08-14 19:20 release_6-0-0/html/images/spectrast_tiny.png drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/perl/ drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/perl/tpp_gui/ -rw-rw-r-- lmendoza/moritz 469318 2021-08-11 00:52 release_6-0-0/perl/tpp_gui/tpp_gui.pl -rw-rw-r-- lmendoza/moritz 12604 2021-04-20 05:21 release_6-0-0/perl/tpp_gui/tpp_gui.css -rw-rw-r-- lmendoza/moritz 11745 2021-04-20 05:21 release_6-0-0/perl/tpp_gui/tpp_gui.js -rw-rw-r-- lmendoza/moritz 5275 2021-03-09 08:54 release_6-0-0/perl/tpp_gui/filterTable.js -rw-rw-r-- lmendoza/moritz 12038 2020-06-13 02:28 release_6-0-0/perl/tpp_gui/spc_logo.png -rw-rw-r-- lmendoza/moritz 8538 2019-10-12 01:51 release_6-0-0/perl/tpp_gui/isb_logo.png -rw-rw-r-- lmendoza/moritz 1370 2016-05-19 00:34 release_6-0-0/perl/tpp_gui/tpp_gui_config.pl -rw-rw-r-- lmendoza/moritz 9582 2016-05-03 22:23 release_6-0-0/perl/tpp_gui/nigms.png -rw-rw-r-- lmendoza/moritz 1687 2015-01-07 00:24 release_6-0-0/perl/tpp_gui/nhlbi.gif drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/perl/tpp_gui/users/ drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/perl/tpp_gui/users/guest/ -rw-rw-r-- lmendoza/moritz 14 2008-04-02 22:10 release_6-0-0/perl/tpp_gui/users/guest/.password -rw-rw-r-- lmendoza/moritz 4067 2006-02-18 02:24 release_6-0-0/perl/tpp_gui/nhlbi.jpg drwxrwxr-x lmendoza/moritz 0 2021-08-11 07:22 release_6-0-0/perl/bin/ -rwxrwxr-x lmendoza/moritz 15313 2021-08-10 20:09 release_6-0-0/perl/bin/tpptray.bat -rwxrwxr-x lmendoza/moritz 41190 2021-06-29 07:43 release_6-0-0/perl/bin/promast.pl -rwxrwxr-x lmendoza/moritz 77034 2021-06-28 19:30 release_6-0-0/perl/bin/assess_swathlib.pl -rwxrwxr-x lmendoza/moritz 15089 2021-06-16 02:42 release_6-0-0/perl/bin/clips.pl -rwxrwxr-x lmendoza/moritz 77854 2021-04-11 09:00 release_6-0-0/perl/bin/tpp_models.pl -rwxrwxr-x lmendoza/moritz 31189 2021-03-09 20:08 release_6-0-0/perl/bin/updatepaths.pl -rwxrwxr-x lmendoza/moritz 1238 2020-12-09 08:57 release_6-0-0/perl/bin/test_tpi.pl -rwxrwxr-x lmendoza/moritz 19733 2020-11-18 00:03 release_6-0-0/perl/bin/novor2xml.pl -rwxrwxr-x lmendoza/moritz 11990 2020-11-16 21:31 release_6-0-0/perl/bin/DIALib-QC_RPlot.pl -rwxrwxr-x lmendoza/moritz 47016 2020-11-14 05:47 release_6-0-0/perl/bin/ProphetModels.pl -rwxrwxr-x lmendoza/moritz 15650 2020-11-14 05:47 release_6-0-0/perl/bin/ProtProphModels.pl -rw-rw-r-- lmendoza/moritz 6083 2020-10-09 05:38 release_6-0-0/perl/bin/ptm2plot.pl -rwxrwxr-x lmendoza/moritz 40427 2020-07-18 00:44 release_6-0-0/perl/bin/comparePeps_Categories.pl -rwxrwxr-x lmendoza/moritz 28803 2020-06-16 19:44 release_6-0-0/perl/bin/compareProts.pl -rwxrwxr-x lmendoza/moritz 69204 2020-06-16 19:44 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/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/log mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts ### Boost: unpacking source (this may take a few minutes)... tar jxmf /builddir/build/BUILD/release_6-0-0/extern/boost_1_56_0.tar.bz2 -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ ### ...applying Boost patch boost_1_56_0.copyfilepatch patch -s -p0 -d /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ < /builddir/build/BUILD/release_6-0-0/extern/boost_1_56_0.copyfilepatch ### ...done unpacking Boost source ### Boost: boostrapping source... cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/boost_1_56_0; ./bootstrap.sh \ \ --prefix=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28 \ --with-libraries=system,filesystem,iostreams,program_options,regex,serialization,thread,chrono Building Boost.Build engine with toolset gcc... tools/build/src/engine/bin.linuxx86_64/b2 Unicode/ICU support for Boost.Regex?... /usr Generating Boost.Build configuration in project-config.jam... Bootstrapping is done. To build, run: ./b2 To adjust configuration, edit 'project-config.jam'. Further information: - Command line help: ./b2 --help - Getting started guide: http://www.boost.org/more/getting_started/unix-variants.html - Boost.Build documentation: http://www.boost.org/boost-build2/doc/html/index.html ### ...done bootstrapping Boost source ### Boost: building and installing ... cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/boost_1_56_0; \ sed -i 's/mingw/gcc/g' project-config.jam; \ ./b2 -q -d0 --prefix=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28 \ --layout=system --build-type=minimal \ variant=release link=static runtime-link=static cxxflags=-Wno-narrowing \ install warning: On gcc, DLLs can not be built with 'static'. warning: It is suggested to use 'static' together with 'static'. Performing configuration checks - zlib : yes - has_icu builds : yes - lockfree boost::atomic_flag : yes Component configuration: - atomic : not building - chrono : building - container : not building - context : not building - coroutine : not building - date_time : not building - exception : not building - filesystem : building - graph : not building - graph_parallel : not building - iostreams : building - locale : not building - log : not building - math : not building - mpi : not building - program_options : building - python : not building - random : not building - regex : building - serialization : building - signals : not building - system : building - test : not building - thread : building - timer : not building - wave : not building ### ...done building and installing Boost mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/boost touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/boost/.d cp 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-D__LINUX__ -IMSToolkit/include -ICometSearch Comet.cpp -c In file included from CometSearch/Common.h:53, from Comet.cpp:18: CometSearch/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': CometSearch/ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from CometSearch/Common.h:20, from Comet.cpp:18: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from CometSearch/Common.h:53, from Comet.cpp:18: CometSearch/ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': CometSearch/ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from CometSearch/Common.h:20, from Comet.cpp:18: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from CometSearch/Common.h:53, from Comet.cpp:18: CometSearch/ThreadPool.h: In function 'void* threadStart(void*)': CometSearch/ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from CometSearch/Common.h:20, from Comet.cpp:18: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Comet.cpp:20: CometSearch/CometInterfaces.h: At global scope: CometSearch/CometInterfaces.h:77:23: warning: 'CometInterfaces::_tp' defined but not used [-Wunused-variable] 77 | static ThreadPool* _tp; | ^~~ cd MSToolkit && make arlib make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/comet_source_2021010/MSToolkit' gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/adler32.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/compress.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/crc32.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/deflate.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/inffast.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/inflate.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/infback.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/inftrees.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/trees.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/uncompr.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/zlib-1.2.8/zutil.c -c g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/MSNumpress.cpp -c -o mzp.MSNumpress.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzp_base64.cpp -c -o mzp.mzp_base64.o src/mzParser/mzp_base64.cpp: In function 'int b64_decode_mio(char*, char*, size_t)': src/mzParser/mzp_base64.cpp:125:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 125 | int register a; | ^ src/mzParser/mzp_base64.cpp:126:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 126 | int register b; | ^ g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicSpectrum.cpp -c -o mzp.BasicSpectrum.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzParser.cpp -c -o mzp.mzParser.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/RAMPface.cpp -c -o mzp.RAMPface.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxhandler.cpp -c -o mzp.saxhandler.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzmlhandler.cpp -c -o mzp.saxmzmlhandler.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzxmlhandler.cpp -c -o mzp.saxmzxmlhandler.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/Czran.cpp -c -o mzp.Czran.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mz5handler.cpp -c -o mzp.mz5handler.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Config.cpp -c -o mzp.mzpMz5Config.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Structs.cpp -c -o mzp.mzpMz5Structs.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicChromatogram.cpp -c -o mzp.BasicChromatogram.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/PWIZface.cpp -c -o mzp.PWIZface.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzp_base64.cpp -c -o mzp.mzp_base64_lite.o src/mzParser/mzp_base64.cpp: In function 'int b64_decode_mio(char*, char*, size_t)': src/mzParser/mzp_base64.cpp:125:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 125 | int register a; | ^ src/mzParser/mzp_base64.cpp:126:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 126 | int register b; | ^ g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicSpectrum.cpp -c -o mzp.BasicSpectrum_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzParser.cpp -c -o mzp.mzParser_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/RAMPface.cpp -c -o mzp.RAMPface_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxhandler.cpp -c -o mzp.saxhandler_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzmlhandler.cpp -c -o mzp.saxmzmlhandler_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzxmlhandler.cpp -c -o mzp.saxmzxmlhandler_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/Czran.cpp -c -o mzp.Czran_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mz5handler.cpp -c -o mzp.mz5handler_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Config.cpp -c -o mzp.mzpMz5Config_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Structs.cpp -c -o mzp.mzpMz5Structs_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicChromatogram.cpp -c -o mzp.BasicChromatogram_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/PWIZface.cpp -c -o mzp.PWIZface_lite.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CAdditionalSearchParams.cpp -c -o mzid.CAdditionalSearchParams.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CAnalysisCollection.cpp -c -o mzid.CAnalysisCollection.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CAnalysisData.cpp -c -o mzid.CAnalysisData.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CAnalysisParams.cpp -c -o mzid.CAnalysisParams.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CAnalysisProtocolCollection.cpp -c -o mzid.CAnalysisProtocolCollection.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CAnalysisSoftware.cpp -c -o mzid.CAnalysisSoftware.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CAnalysisSoftwareList.cpp -c -o mzid.CAnalysisSoftwareList.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CContactRole.cpp -c -o mzid.CContactRole.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CCvList.cpp -c -o mzid.CCvList.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CDatabaseName.cpp -c -o mzid.CDatabaseName.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CDataCollection.cpp -c -o mzid.CDataCollection.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CDBSequence.cpp -c -o mzid.CDBSequence.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CEnzyme.cpp -c -o mzid.CEnzyme.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CEnzymeName.cpp -c -o mzid.CEnzymeName.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CEnzymes.cpp -c -o mzid.CEnzymes.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CFileFormat.cpp -c -o mzid.CFileFormat.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CFragmentArray.cpp -c -o mzid.CFragmentArray.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CFragmentation.cpp -c -o mzid.CFragmentation.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CFragmentationTable.cpp -c -o mzid.CFragmentationTable.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CInputs.cpp -c -o mzid.CInputs.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CIonType.cpp -c -o mzid.CIonType.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CMassTable.cpp -c -o mzid.CMassTable.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CMeasure.cpp -c -o mzid.CMeasure.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CModification.cpp -c -o mzid.CModification.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CModificationParams.cpp -c -o mzid.CModificationParams.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CMzIdentML.cpp -c -o mzid.CMzIdentML.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CPeptide.cpp -c -o mzid.CPeptide.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CPeptideEvidence.cpp -c -o mzid.CPeptideEvidence.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CPeptideHypothesis.cpp -c -o mzid.CPeptideHypothesis.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CProteinAmbiguityGroup.cpp -c -o mzid.CProteinAmbiguityGroup.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CProteinDetection.cpp -c -o mzid.CProteinDetection.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CProteinDetectionHypothesis.cpp -c -o mzid.CProteinDetectionHypothesis.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CProteinDetectionList.cpp -c -o mzid.CProteinDetectionList.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CProteinDetectionProtocol.cpp -c -o mzid.CProteinDetectionProtocol.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CPSM.cpp -c -o mzid.CPSM.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CResidue.cpp -c -o mzid.CResidue.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CRole.cpp -c -o mzid.CRole.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSearchDatabase.cpp -c -o mzid.CSearchDatabase.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSearchModification.cpp -c -o mzid.CSearchModification.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSearchType.cpp -c -o mzid.CSearchType.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSequenceCollection.cpp -c -o mzid.CSequenceCollection.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSoftwareName.cpp -c -o mzid.CSoftwareName.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSourceFile.cpp -c -o mzid.CSourceFile.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSpecificityRules.cpp -c -o mzid.CSpecificityRules.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSpectraData.cpp -c -o mzid.CSpectraData.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSpectrumIdentification.cpp -c -o mzid.CSpectrumIdentification.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSpectrumIdentificationItem.cpp -c -o mzid.CSpectrumIdentificationItem.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSpectrumIdentificationList.cpp -c -o mzid.CSpectrumIdentificationList.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSpectrumIdentificationProtocol.cpp -c -o mzid.CSpectrumIdentificationProtocol.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSpectrumIdentificationResult.cpp -c -o mzid.CSpectrumIdentificationResult.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CSpectrumIDFormat.cpp -c -o mzid.CSpectrumIDFormat.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H src/mzIMLTools/CThreshold.cpp -c -o mzid.CThreshold.o g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/Spectrum.cpp -c g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/MSObject.cpp -c g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/mzMLWriter.cpp -c ./src/MSToolkit/mzMLWriter.cpp: In member function 'bool MSToolkit::MzMLWriter::writeSpectra(MSToolkit::MSObject&)': ./src/MSToolkit/mzMLWriter.cpp:261:1: warning: no return statement in function returning non-void [-Wreturn-type] 261 | } | ^ g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/pepXMLWriter.cpp -c g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/MSReader.cpp -c g++ -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H -D_NOSQLITE ./src/MSToolkit/MSReader.cpp -c -o MSReaderLite.o gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/expat-2.2.0/xmlparse.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/expat-2.2.0/xmlrole.c -c gcc -O3 -static -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H ./src/expat-2.2.0/xmltok.c -c ar rcs libmstoolkitlite.a adler32.o compress.o crc32.o deflate.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o xmlparse.o xmlrole.o xmltok.o mzid.CAdditionalSearchParams.o mzid.CAnalysisCollection.o mzid.CAnalysisData.o mzid.CAnalysisParams.o mzid.CAnalysisProtocolCollection.o mzid.CAnalysisSoftware.o mzid.CAnalysisSoftwareList.o mzid.CContactRole.o mzid.CCvList.o mzid.CDatabaseName.o mzid.CDataCollection.o mzid.CDBSequence.o mzid.CEnzyme.o mzid.CEnzymeName.o mzid.CEnzymes.o mzid.CFileFormat.o mzid.CFragmentArray.o mzid.CFragmentation.o mzid.CFragmentationTable.o mzid.CInputs.o mzid.CIonType.o mzid.CMassTable.o mzid.CMeasure.o mzid.CModification.o mzid.CModificationParams.o mzid.CMzIdentML.o mzid.CPeptide.o mzid.CPeptideEvidence.o mzid.CPeptideHypothesis.o mzid.CProteinAmbiguityGroup.o mzid.CProteinDetection.o mzid.CProteinDetectionHypothesis.o mzid.CProteinDetectionList.o mzid.CProteinDetectionProtocol.o mzid.CPSM.o mzid.CResidue.o mzid.CRole.o mzid.CSearchDatabase.o mzid.CSearchModification.o mzid.CSearchType.o mzid.CSequenceCollection.o mzid.CSoftwareName.o mzid.CSourceFile.o mzid.CSpecificityRules.o mzid.CSpectraData.o mzid.CSpectrumIdentification.o mzid.CSpectrumIdentificationItem.o mzid.CSpectrumIdentificationList.o mzid.CSpectrumIdentificationProtocol.o mzid.CSpectrumIdentificationResult.o mzid.CSpectrumIDFormat.o mzid.CThreshold.o mzp.MSNumpress.o mzp.mzp_base64_lite.o mzp.BasicSpectrum_lite.o mzp.mzParser_lite.o mzp.RAMPface_lite.o mzp.saxhandler_lite.o mzp.saxmzmlhandler_lite.o mzp.saxmzxmlhandler_lite.o mzp.Czran_lite.o mzp.mz5handler_lite.o mzp.mzpMz5Config_lite.o mzp.mzpMz5Structs_lite.o mzp.BasicChromatogram_lite.o mzp.PWIZface_lite.o Spectrum.o MSObject.o mzMLWriter.o pepXMLWriter.o MSReaderLite.o make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/comet_source_2021010/MSToolkit' cd CometSearch && make make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/comet_source_2021010/CometSearch' g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include Threading.cpp -c g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometInterfaces.cpp -c In file included from Common.h:53, from CometInterfaces.h:20, from CometInterfaces.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometInterfaces.h:20, from CometInterfaces.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometInterfaces.h:20, from CometInterfaces.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometInterfaces.h:20, from CometInterfaces.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometInterfaces.h:20, from CometInterfaces.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometInterfaces.h:20, from CometInterfaces.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from CometInterfaces.cpp:17: CometInterfaces.h: At global scope: CometInterfaces.h:77:23: warning: 'CometInterfaces::_tp' defined but not used [-Wunused-variable] 77 | static ThreadPool* _tp; | ^~~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometSearch.cpp -c In file included from Common.h:53, from CometSearch.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometSearch.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometSearch.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometSearch.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometSearch.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometSearch.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ CometSearch.cpp: In static member function 'static void CometSearch::SearchThreadProc(SearchThreadData*, ThreadPool*)': CometSearch.cpp:839:85: warning: unused parameter 'tp' [-Wunused-parameter] 839 | void CometSearch::SearchThreadProc(SearchThreadData *pSearchThreadData, ThreadPool* tp) | ~~~~~~~~~~~~^~ CometSearch.cpp: In member function 'bool CometSearch::CalcVarModIons(char*, int, bool*, int*, double, int, sDBEntry*, long int*)': CometSearch.cpp:5740:40: warning: unused parameter 'lNumIterations' [-Wunused-parameter] 5740 | long *lNumIterations) | ~~~~~~^~~~~~~~~~~~~~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometPreprocess.cpp -c In file included from Common.h:53, from CometPreprocess.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometPreprocess.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometPreprocess.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometPreprocess.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometPreprocess.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometPreprocess.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ CometPreprocess.cpp: In static member function 'static void CometPreprocess::PreprocessThreadProc(PreprocessThreadData*, ThreadPool*)': CometPreprocess.cpp:236:101: warning: unused parameter 'tp' [-Wunused-parameter] 236 | void CometPreprocess::PreprocessThreadProc(PreprocessThreadData *pPreprocessThreadData, ThreadPool* tp) | ~~~~~~~~~~~~^~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometPostAnalysis.cpp -c In file included from Common.h:53, from CometPostAnalysis.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometPostAnalysis.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometPostAnalysis.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometPostAnalysis.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometPostAnalysis.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometPostAnalysis.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ CometPostAnalysis.cpp: In static member function 'static void CometPostAnalysis::PostAnalysisThreadProc(PostAnalysisThreadData*, ThreadPool*)': CometPostAnalysis.cpp:76:97: warning: unused parameter 'tp' [-Wunused-parameter] 76 | void CometPostAnalysis::PostAnalysisThreadProc(PostAnalysisThreadData *pThreadData, ThreadPool* tp) | ~~~~~~~~~~~~^~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometMassSpecUtils.cpp -c In file included from Common.h:53, from CometMassSpecUtils.cpp:21: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometMassSpecUtils.cpp:21: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometMassSpecUtils.cpp:21: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometMassSpecUtils.cpp:21: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometMassSpecUtils.cpp:21: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometMassSpecUtils.cpp:21: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from CometSearchManager.h:22, from CometMassSpecUtils.cpp:23: CometInterfaces.h: At global scope: CometInterfaces.h:77:23: warning: 'CometInterfaces::_tp' defined but not used [-Wunused-variable] 77 | static ThreadPool* _tp; | ^~~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometWriteOut.cpp -c In file included from Common.h:53, from CometWriteOut.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteOut.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWriteOut.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteOut.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWriteOut.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteOut.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ CometWriteOut.cpp: In static member function 'static bool CometWriteOut::PrintResults(int, bool, FILE*)': CometWriteOut.cpp:124:32: warning: '%.5d' directive writing between 5 and 11 bytes into a region of size between 0 and 1022 [-Wformat-overflow=] 124 | sprintf(szOutput, "%s/%s.%.5d.%.5d.%d.out", | ^~~~ CometWriteOut.cpp:124:14: note: 'sprintf' output between 20 and 1064 bytes into a destination of size 1024 124 | sprintf(szOutput, "%s/%s.%.5d.%.5d.%d.out", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | g_staticParams.inputFile.szBaseName, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | pStr, | ~~~~~ 127 | pQuery->_spectrumInfoInternal.iScanNumber, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | pQuery->_spectrumInfoInternal.iScanNumber, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | pQuery->_spectrumInfoInternal.iChargeState); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometWriteOut.cpp:115:35: warning: '%s' directive writing up to 511 bytes into a region of size between 506 and 1017 [-Wformat-overflow=] 115 | sprintf(szOutput, "%s_decoy/%s.%.5d.%.5d.%d.out", | ^~ CometWriteOut.cpp:115:14: note: 'sprintf' output between 26 and 1070 bytes into a destination of size 1024 115 | sprintf(szOutput, "%s_decoy/%s.%.5d.%.5d.%d.out", | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 | g_staticParams.inputFile.szBaseName, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 | pStr, | ~~~~~ 118 | pQuery->_spectrumInfoInternal.iScanNumber, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 | pQuery->_spectrumInfoInternal.iScanNumber, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 | pQuery->_spectrumInfoInternal.iChargeState); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometWriteOut.cpp:273:28: warning: '%+d' directive writing between 2 and 11 bytes into a region of size 9 [-Wformat-overflow=] 273 | sprintf(szTempStr, " %+d", iLenMaxDuplicates); | ^~~ CometWriteOut.cpp:273:26: note: directive argument in the range [1, 2147483647] 273 | sprintf(szTempStr, " %+d", iLenMaxDuplicates); | ^~~~~~ CometWriteOut.cpp:273:14: note: 'sprintf' output between 4 and 13 bytes into a destination of size 10 273 | sprintf(szTempStr, " %+d", iLenMaxDuplicates); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometWriteOut.cpp:151:59: warning: '%s' directive writing up to 1023 bytes into a region of size 994 [-Wformat-overflow=] 151 | sprintf(szErrorMsg, " Error - cannot write to file %s.\n", szOutput); | ^~ ~~~~~~~~ CometWriteOut.cpp:151:14: note: 'sprintf' output between 33 and 1056 bytes into a destination of size 1024 151 | sprintf(szErrorMsg, " Error - cannot write to file %s.\n", szOutput); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometWriteSqt.cpp -c In file included from Common.h:53, from CometWriteSqt.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteSqt.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWriteSqt.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteSqt.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWriteSqt.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteSqt.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from CometSearchManager.h:22, from CometWriteSqt.cpp:21: CometInterfaces.h: At global scope: CometInterfaces.h:77:23: warning: 'CometInterfaces::_tp' defined but not used [-Wunused-variable] 77 | static ThreadPool* _tp; | ^~~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometWritePepXML.cpp -c In file included from Common.h:53, from CometWritePepXML.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWritePepXML.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWritePepXML.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWritePepXML.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWritePepXML.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWritePepXML.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from CometSearchManager.h:22, from CometWritePepXML.cpp:21: CometInterfaces.h: At global scope: CometInterfaces.h:77:23: warning: 'CometInterfaces::_tp' defined but not used [-Wunused-variable] 77 | static ThreadPool* _tp; | ^~~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometWriteMzIdentML.cpp -c In file included from Common.h:53, from CometWriteMzIdentML.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteMzIdentML.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWriteMzIdentML.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteMzIdentML.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWriteMzIdentML.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteMzIdentML.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from CometSearchManager.h:22, from CometWriteMzIdentML.cpp:21: CometInterfaces.h: At global scope: CometInterfaces.h:77:23: warning: 'CometInterfaces::_tp' defined but not used [-Wunused-variable] 77 | static ThreadPool* _tp; | ^~~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometWritePercolator.cpp -c In file included from Common.h:53, from CometWritePercolator.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWritePercolator.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWritePercolator.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWritePercolator.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWritePercolator.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWritePercolator.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometWriteTxt.cpp -c In file included from Common.h:53, from CometWriteTxt.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteTxt.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWriteTxt.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteTxt.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometWriteTxt.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometWriteTxt.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-write-strings -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I. -I../MSToolkit/include CometSearchManager.cpp -c In file included from Common.h:53, from CometSearchManager.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': ThreadPool.h:143:26: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 143 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometSearchManager.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometSearchManager.cpp:17: ThreadPool.h: In member function 'void ThreadPool::wait_for_available_thread()': ThreadPool.h:183:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 183 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometSearchManager.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from Common.h:53, from CometSearchManager.cpp:17: ThreadPool.h: In function 'void* threadStart(void*)': ThreadPool.h:340:23: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 340 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from Common.h:20, from CometSearchManager.cpp:17: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ CometSearchManager.cpp: In static member function 'static bool CometSearchManager::WriteIndexedDatabase()': CometSearchManager.cpp:2973:28: warning: '.idx' directive writing 4 bytes into a region of size between 1 and 512 [-Wformat-overflow=] 2973 | sprintf(szIndexFile, "%s.idx", g_staticParams.databaseInfo.szDatabase); | ^~~~ CometSearchManager.cpp:2973:11: note: 'sprintf' output between 5 and 516 bytes into a destination of size 512 2973 | sprintf(szIndexFile, "%s.idx", g_staticParams.databaseInfo.szDatabase); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp: In member function 'virtual bool CometSearchManager::DoSearch()': CometSearchManager.cpp:416:34: warning: '%d' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 416 | sprintf(szIsotope, "ISOTOPE%d", g_staticParams.tolerances.iIsotopeError); | ^~ CometSearchManager.cpp:416:26: note: directive argument in the range [1, 2147483647] 416 | sprintf(szIsotope, "ISOTOPE%d", g_staticParams.tolerances.iIsotopeError); | ^~~~~~~~~~~ CometSearchManager.cpp:416:14: note: 'sprintf' output between 9 and 18 bytes into a destination of size 16 416 | sprintf(szIsotope, "ISOTOPE%d", g_staticParams.tolerances.iIsotopeError); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:222:73: warning: '%s' directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 222 | sprintf(szErrorMsg, " Error - could not create directory \"%s\".\n", szDecoyDir); | ^~ ~~~~~~~~~~ CometSearchManager.cpp:222:20: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 222 | sprintf(szErrorMsg, " Error - could not create directory \"%s\".\n", szDecoyDir); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1757:76: warning: '%s' directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 1757 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoySQT); | ^~ ~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1757:23: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 1757 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoySQT); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1732:67: warning: '%s' directive writing up to 1023 bytes into a region of size 993 [-Wformat-overflow=] 1732 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputSQT); | ^~ ~~~~~~~~~~~ CometSearchManager.cpp:1732:20: note: 'sprintf' output between 35 and 1058 bytes into a destination of size 1024 1732 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputSQT); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1820:76: warning: '%s' directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 1820 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyTxt); | ^~ ~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1820:23: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 1820 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyTxt); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1794:67: warning: '%s' directive writing up to 1023 bytes into a region of size 993 [-Wformat-overflow=] 1794 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputTxt); | ^~ ~~~~~~~~~~~ CometSearchManager.cpp:1794:20: note: 'sprintf' output between 35 and 1058 bytes into a destination of size 1024 1794 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputTxt); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1883:76: warning: '%s' directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 1883 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyPepXML); | ^~ ~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1883:23: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 1883 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyPepXML); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1857:67: warning: '%s' directive writing up to 1023 bytes into a region of size 993 [-Wformat-overflow=] 1857 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputPepXML); | ^~ ~~~~~~~~~~~~~~ CometSearchManager.cpp:1857:20: note: 'sprintf' output between 35 and 1058 bytes into a destination of size 1024 1857 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputPepXML); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1918:43: warning: '.XXXXXX' directive writing 7 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 1918 | sprintf(szOutputMzIdentMLtmp, "%s.XXXXXX", szOutputMzIdentML); | ^~~~~~~ CometSearchManager.cpp:1918:17: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 1918 | sprintf(szOutputMzIdentMLtmp, "%s.XXXXXX", szOutputMzIdentML); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1959:51: warning: '.XXXXXX' directive writing 7 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 1959 | sprintf(szOutputDecoyMzIdentMLtmp, "%s.XXXXXX",szOutputDecoyMzIdentML); | ^~~~~~~ CometSearchManager.cpp:1959:20: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 1959 | sprintf(szOutputDecoyMzIdentMLtmp, "%s.XXXXXX",szOutputDecoyMzIdentML); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1952:76: warning: '%s' directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 1952 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyMzIdentML); | ^~ ~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1952:23: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 1952 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyMzIdentML); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1959:51: warning: '.XXXXXX' directive writing 7 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 1959 | sprintf(szOutputDecoyMzIdentMLtmp, "%s.XXXXXX",szOutputDecoyMzIdentML); | ^~~~~~~ CometSearchManager.cpp:1959:20: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 1959 | sprintf(szOutputDecoyMzIdentMLtmp, "%s.XXXXXX",szOutputDecoyMzIdentML); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1969:76: warning: '%s' directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 1969 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyMzIdentMLtmp); | ^~ ~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1969:23: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 1969 | sprintf(szErrorMsg, " Error - cannot write to decoy file \"%s\".\n", szOutputDecoyMzIdentMLtmp); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1911:67: warning: '%s' directive writing up to 1023 bytes into a region of size 993 [-Wformat-overflow=] 1911 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputMzIdentML); | ^~ ~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1911:20: note: 'sprintf' output between 35 and 1058 bytes into a destination of size 1024 1911 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputMzIdentML); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1918:43: warning: '.XXXXXX' directive writing 7 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 1918 | sprintf(szOutputMzIdentMLtmp, "%s.XXXXXX", szOutputMzIdentML); | ^~~~~~~ CometSearchManager.cpp:1918:17: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 1918 | sprintf(szOutputMzIdentMLtmp, "%s.XXXXXX", szOutputMzIdentML); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1929:67: warning: '%s' directive writing up to 1023 bytes into a region of size 993 [-Wformat-overflow=] 1929 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputMzIdentMLtmp); | ^~ ~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1929:20: note: 'sprintf' output between 35 and 1058 bytes into a destination of size 1024 1929 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputMzIdentMLtmp); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1995:67: warning: '%s' directive writing up to 1023 bytes into a region of size 993 [-Wformat-overflow=] 1995 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputPercolator); | ^~ ~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:1995:20: note: 'sprintf' output between 35 and 1058 bytes into a destination of size 1024 1995 | sprintf(szErrorMsg, " Error - cannot write to file \"%s\".\n", szOutputPercolator); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:2344:79: warning: '%s' directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 2344 | sprintf(szErrorMsg, " Error - cannot read temporary file \"%s\".\n", szOutputMzIdentMLtmp); | ^~ ~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:2344:26: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 2344 | sprintf(szErrorMsg, " Error - cannot read temporary file \"%s\".\n", szOutputMzIdentMLtmp); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:2365:79: warning: '%s' directive writing up to 1023 bytes into a region of size 987 [-Wformat-overflow=] 2365 | sprintf(szErrorMsg, " Error - cannot read temporary file \"%s\".\n", szOutputDecoyMzIdentMLtmp); | ^~ ~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:2365:26: note: 'sprintf' output between 41 and 1064 bytes into a destination of size 1024 2365 | sprintf(szErrorMsg, " Error - cannot read temporary file \"%s\".\n", szOutputDecoyMzIdentMLtmp); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:2124:32: warning: '%s' directive writing up to 255 bytes into a region of size 128 [-Wformat-overflow=] 2124 | sprintf(szOut, "%s", szStatusMsg); | ^~ ~~~~~~~~~~~ CometSearchManager.cpp:2124:23: note: 'sprintf' output between 1 and 256 bytes into a destination of size 128 2124 | sprintf(szOut, "%s", szStatusMsg); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:363:66: warning: '%s' directive writing up to 511 bytes into a region of size 508 [-Wformat-overflow=] 363 | sprintf(szOutFileTimeString+strlen(szOutFileTimeString), " on %s", g_staticParams.szHostName); | ^~ ~~~~~~~~~~~~~~~~~~~~~~~~~ CometSearchManager.cpp:363:11: note: 'sprintf' output between 5 and 516 bytes into a destination of size 512 363 | sprintf(szOutFileTimeString+strlen(szOutFileTimeString), " on %s", g_staticParams.szHostName); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar rcs libcometsearch.a Threading.o CometInterfaces.o CometSearch.o CometPreprocess.o CometPostAnalysis.o CometMassSpecUtils.o CometWriteOut.o CometWriteSqt.o CometWritePepXML.o CometWriteMzIdentML.o CometWritePercolator.o CometWriteTxt.o CometSearchManager.o make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/comet_source_2021010/CometSearch' g++ Comet.o -o comet.exe -O3 -static -std=c++11 -fpermissive -Wall -Wextra -Wno-char-subscripts -DCURL_STATICLIB -DHTTP_ONLY -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -IMSToolkit/include -ICometSearch -LMSToolkit -LCometSearch -lcometsearch -lmstoolkitlite -lm -lpthread make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/comet_source_2021010' mv /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/comet_source_2021010/comet.exe /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/comet_source_2021010/comet install -D -m 555 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/comet_source_2021010/comet /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/comet tar zxf /builddir/build/BUILD/release_6-0-0/extern/expat-2.0.1.tar.gz -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/expat-2.0.1; ./configure \ --enable-shared=no --enable-static=yes --build=x86_64 \ --includedir /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include --libdir /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib checking build system type... x86_64-pc-none checking host system type... x86_64-pc-none checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for a sed that does not truncate output... /usr/bin/sed checking for egrep... grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... unknown checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for g77... no checking for f77... no checking for xlf... no checking for frt... no checking for pgf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for f90... no checking for xlf90... no checking for pgf90... no checking for epcf90... no checking for f95... no checking for fort... no checking for xlf95... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for gfortran... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... no checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... no checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ANSI C... (cached) none needed checking for a BSD-compatible install... /usr/bin/install -c checking whether gcc accepts -fexceptions... yes checking for ANSI C header files... (cached) yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for size_t... yes checking for memmove... yes checking for bcopy... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for unistd.h... (cached) yes checking for off_t... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for getpagesize... yes checking for working mmap... yes checking for an ANSI C99-conforming __func__... yes configure: creating ./config.status config.status: creating Makefile config.status: creating expat_config.h make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/expat-2.0.1 installlib make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/expat-2.0.1' /bin/sh ./libtool --silent --mode=compile gcc -I./lib -I. -g -O2 -Wall -Wmissing-prototypes -Wstrict-prototypes -fexceptions -DHAVE_EXPAT_CONFIG_H -o lib/xmlparse.lo -c lib/xmlparse.c /bin/sh ./libtool --silent --mode=compile gcc -I./lib -I. -g -O2 -Wall -Wmissing-prototypes -Wstrict-prototypes -fexceptions -DHAVE_EXPAT_CONFIG_H -o lib/xmltok.lo -c lib/xmltok.c In file included from lib/xmltok.c:23: lib/xmltok_ns.c: In function 'findEncodingNS': lib/xmltok.h:256:10: warning: 'buf' may be used uninitialized [-Wmaybe-uninitialized] 256 | (((enc)->utf8Convert)(enc, fromP, fromLim, toP, toLim)) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/xmltok_ns.c:78:3: note: in expansion of macro 'XmlUtf8Convert' 78 | XmlUtf8Convert(enc, &ptr, end, &p, p + ENCODING_MAX - 1); | ^~~~~~~~~~~~~~ lib/xmltok.h:256:10: note: by argument 5 of type 'const char *' to 'void(const ENCODING *, const char **, const char *, char **, const char *)' {aka 'void(const struct encoding *, const char **, const char *, char **, const char *)'} 256 | (((enc)->utf8Convert)(enc, fromP, fromLim, toP, toLim)) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/xmltok_ns.c:78:3: note: in expansion of macro 'XmlUtf8Convert' 78 | XmlUtf8Convert(enc, &ptr, end, &p, p + ENCODING_MAX - 1); | ^~~~~~~~~~~~~~ In file included from lib/xmltok.c:1633: lib/xmltok_ns.c:75:8: note: 'buf' declared here 75 | char buf[ENCODING_MAX]; | ^~~ In file included from lib/xmltok.c:23: lib/xmltok_ns.c: In function 'findEncoding': lib/xmltok.h:256:10: warning: 'buf' may be used uninitialized [-Wmaybe-uninitialized] 256 | (((enc)->utf8Convert)(enc, fromP, fromLim, toP, toLim)) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/xmltok_ns.c:78:3: note: in expansion of macro 'XmlUtf8Convert' 78 | XmlUtf8Convert(enc, &ptr, end, &p, p + ENCODING_MAX - 1); | ^~~~~~~~~~~~~~ lib/xmltok.h:256:10: note: by argument 5 of type 'const char *' to 'void(const ENCODING *, const char **, const char *, char **, const char *)' {aka 'void(const struct encoding *, const char **, const char *, char **, const char *)'} 256 | (((enc)->utf8Convert)(enc, fromP, fromLim, toP, toLim)) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/xmltok_ns.c:78:3: note: in expansion of macro 'XmlUtf8Convert' 78 | XmlUtf8Convert(enc, &ptr, end, &p, p + ENCODING_MAX - 1); | ^~~~~~~~~~~~~~ In file included from lib/xmltok.c:1622: lib/xmltok_ns.c:75:8: note: 'buf' declared here 75 | char buf[ENCODING_MAX]; | ^~~ /bin/sh ./libtool --silent --mode=compile gcc -I./lib -I. -g -O2 -Wall -Wmissing-prototypes -Wstrict-prototypes -fexceptions -DHAVE_EXPAT_CONFIG_H -o lib/xmlrole.lo -c lib/xmlrole.c /bin/sh ./libtool --silent --mode=link gcc -I./lib -I. -g -O2 -Wall -Wmissing-prototypes -Wstrict-prototypes -fexceptions -DHAVE_EXPAT_CONFIG_H -no-undefined -version-info 6:2:5 -rpath /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -o libexpat.la lib/xmlparse.lo lib/xmltok.lo lib/xmlrole.lo /bin/sh ./conftools/mkinstalldirs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include /bin/sh ./libtool --mode=install /usr/bin/install -c libexpat.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.la /usr/bin/install -c .libs/libexpat.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.la /usr/bin/install -c .libs/libexpat.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- for FN in ./lib/expat.h ./lib/expat_external.h ; do /usr/bin/install -c -m 644 $FN /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include ; done make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/expat-2.0.1' make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/expat-2.0.1 installlib make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/expat-2.0.1' /bin/sh ./conftools/mkinstalldirs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include /bin/sh ./libtool --mode=install /usr/bin/install -c libexpat.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.la /usr/bin/install -c .libs/libexpat.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.la /usr/bin/install -c .libs/libexpat.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libexpat.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- for FN in ./lib/expat.h ./lib/expat_external.h ; do /usr/bin/install -c -m 644 $FN /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include ; done make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/expat-2.0.1' mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/expat touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/expat/.d cp /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/expat-2.0.1/COPYING /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/expat/COPYING tar xzf /builddir/build/BUILD/release_6-0-0/extern/fann-2.0.0.tar.gz -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0; ./configure \ --enable-shared=no --enable-static=yes --build=x86_64 \ --includedir /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include --libdir /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking build system type... x86_64-pc-none checking host system type... x86_64-pc-none checking for a sed that does not truncate output... /usr/bin/sed checking for egrep... grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognise dependent libraries... unknown checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for g77... no checking for f77... no checking for xlf... no checking for frt... no checking for pgf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for f90... no checking for xlf90... no checking for pgf90... no checking for epcf90... no checking for f95... no checking for fort... no checking for xlf95... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for gfortran... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 32768 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc static flag works... yes checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... no checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... no checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes appending configuration tag "F77" to libtool checking for ANSI C header files... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes checking for gettimeofday... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/include/Makefile config.status: creating fann.pc config.status: creating fann.spec config.status: creating src/include/config.h config.status: src/include/config.h is unchanged config.status: executing depfiles commands make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0 install make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' Making install in src make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' Making install in include make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src/include' make[4]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src/include' make[4]: Nothing to be done for 'install-exec-am'. /bin/sh ../../mkinstalldirs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include /usr/bin/install -c -m 644 fann.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann.h /usr/bin/install -c -m 644 doublefann.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/doublefann.h /usr/bin/install -c -m 644 fann_internal.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_internal.h /usr/bin/install -c -m 644 floatfann.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/floatfann.h /usr/bin/install -c -m 644 fann_data.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_data.h /usr/bin/install -c -m 644 fixedfann.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fixedfann.h /usr/bin/install -c -m 644 compat_time.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/compat_time.h /usr/bin/install -c -m 644 fann_activation.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_activation.h /usr/bin/install -c -m 644 fann_cascade.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_cascade.h /usr/bin/install -c -m 644 fann_error.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_error.h /usr/bin/install -c -m 644 fann_train.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_train.h /usr/bin/install -c -m 644 fann_io.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_io.h make[4]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src/include' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src/include' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../src/include -D_REENTRANT -g -O2 -MT floatfann.lo -MD -MP -MF ".deps/floatfann.Tpo" \ -c -o floatfann.lo `test -f 'floatfann.c' || echo './'`floatfann.c; \ then mv -f ".deps/floatfann.Tpo" ".deps/floatfann.Plo"; \ else rm -f ".deps/floatfann.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../src/include -D_REENTRANT -g -O2 -MT floatfann.lo -MD -MP -MF .deps/floatfann.Tpo -c floatfann.c -o floatfann.o /bin/sh ../libtool --mode=link gcc -D_REENTRANT -g -O2 -version-info 2:0:0 -o libfloatfann.la -rpath /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib floatfann.lo mkdir .libs ar cru .libs/libfloatfann.a floatfann.o ranlib .libs/libfloatfann.a creating libfloatfann.la (cd .libs && rm -f libfloatfann.la && ln -s ../libfloatfann.la libfloatfann.la) if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../src/include -D_REENTRANT -g -O2 -MT doublefann.lo -MD -MP -MF ".deps/doublefann.Tpo" \ -c -o doublefann.lo `test -f 'doublefann.c' || echo './'`doublefann.c; \ then mv -f ".deps/doublefann.Tpo" ".deps/doublefann.Plo"; \ else rm -f ".deps/doublefann.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../src/include -D_REENTRANT -g -O2 -MT doublefann.lo -MD -MP -MF .deps/doublefann.Tpo -c doublefann.c -o doublefann.o /bin/sh ../libtool --mode=link gcc -D_REENTRANT -g -O2 -version-info 2:0:0 -o libdoublefann.la -rpath /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib doublefann.lo ar cru .libs/libdoublefann.a doublefann.o ranlib .libs/libdoublefann.a creating libdoublefann.la (cd .libs && rm -f libdoublefann.la && ln -s ../libdoublefann.la libdoublefann.la) if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../src/include -D_REENTRANT -g -O2 -MT fixedfann.lo -MD -MP -MF ".deps/fixedfann.Tpo" \ -c -o fixedfann.lo `test -f 'fixedfann.c' || echo './'`fixedfann.c; \ then mv -f ".deps/fixedfann.Tpo" ".deps/fixedfann.Plo"; \ else rm -f ".deps/fixedfann.Tpo"; exit 1; \ fi gcc -DHAVE_CONFIG_H -I. -I. -I../src/include -D_REENTRANT -g -O2 -MT fixedfann.lo -MD -MP -MF .deps/fixedfann.Tpo -c fixedfann.c -o fixedfann.o /bin/sh ../libtool --mode=link gcc -D_REENTRANT -g -O2 -version-info 2:0:0 -o libfixedfann.la -rpath /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib fixedfann.lo ar cru .libs/libfixedfann.a fixedfann.o ranlib .libs/libfixedfann.a creating libfixedfann.la (cd .libs && rm -f libfixedfann.la && ln -s ../libfixedfann.la libfixedfann.la) /bin/sh ../libtool --mode=link gcc -D_REENTRANT -g -O2 -version-info 2:0:0 -o libfann.la -rpath /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib floatfann.lo ar cru .libs/libfann.a floatfann.o ranlib .libs/libfann.a creating libfann.la (cd .libs && rm -f libfann.la && ln -s ../libfann.la libfann.la) make[4]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' /bin/sh ../mkinstalldirs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /bin/sh ../libtool --mode=install /usr/bin/install -c libfloatfann.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.la /usr/bin/install -c .libs/libfloatfann.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.la /usr/bin/install -c .libs/libfloatfann.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../libtool --mode=install /usr/bin/install -c libdoublefann.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.la /usr/bin/install -c .libs/libdoublefann.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.la /usr/bin/install -c .libs/libdoublefann.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../libtool --mode=install /usr/bin/install -c libfixedfann.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.la /usr/bin/install -c .libs/libfixedfann.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.la /usr/bin/install -c .libs/libfixedfann.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../libtool --mode=install /usr/bin/install -c libfann.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.la /usr/bin/install -c .libs/libfann.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.la /usr/bin/install -c .libs/libfann.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' make[3]: Nothing to be done for 'install-exec-am'. /bin/sh ./mkinstalldirs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig mkdir /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig /usr/bin/install -c -m 644 fann.pc /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig/fann.pc make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0 install make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' Making install in src make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' Making install in include make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src/include' make[4]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src/include' make[4]: Nothing to be done for 'install-exec-am'. /bin/sh ../../mkinstalldirs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include /usr/bin/install -c -m 644 fann.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann.h /usr/bin/install -c -m 644 doublefann.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/doublefann.h /usr/bin/install -c -m 644 fann_internal.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_internal.h /usr/bin/install -c -m 644 floatfann.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/floatfann.h /usr/bin/install -c -m 644 fann_data.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_data.h /usr/bin/install -c -m 644 fixedfann.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fixedfann.h /usr/bin/install -c -m 644 compat_time.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/compat_time.h /usr/bin/install -c -m 644 fann_activation.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_activation.h /usr/bin/install -c -m 644 fann_cascade.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_cascade.h /usr/bin/install -c -m 644 fann_error.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_error.h /usr/bin/install -c -m 644 fann_train.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_train.h /usr/bin/install -c -m 644 fann_io.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/fann_io.h make[4]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src/include' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src/include' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' make[4]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' /bin/sh ../mkinstalldirs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /bin/sh ../libtool --mode=install /usr/bin/install -c libfloatfann.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.la /usr/bin/install -c .libs/libfloatfann.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.la /usr/bin/install -c .libs/libfloatfann.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfloatfann.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../libtool --mode=install /usr/bin/install -c libdoublefann.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.la /usr/bin/install -c .libs/libdoublefann.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.la /usr/bin/install -c .libs/libdoublefann.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libdoublefann.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../libtool --mode=install /usr/bin/install -c libfixedfann.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.la /usr/bin/install -c .libs/libfixedfann.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.la /usr/bin/install -c .libs/libfixedfann.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfixedfann.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/sh ../libtool --mode=install /usr/bin/install -c libfann.la /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.la /usr/bin/install -c .libs/libfann.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.la /usr/bin/install -c .libs/libfann.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.a ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.a chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libfann.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,--rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/src' make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' make[3]: Nothing to be done for 'install-exec-am'. /bin/sh ./mkinstalldirs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig /usr/bin/install -c -m 644 fann.pc /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig/fann.pc make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0' mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/fann touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/fann/.d cp /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fann-2.0.0/COPYING /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/fann/COPYING tar xzf /builddir/build/BUILD/release_6-0-0/extern/gsl-1.14.tar.gz -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14; ./configure \ --enable-shared=no --enable-static=yes --build=x86_64 \ --prefix /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28 \ --includedir /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include --libdir /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for a sed that does not truncate output... /usr/bin/sed checking whether make sets $(MAKE)... (cached) yes checking build system type... x86_64-pc-none checking host system type... x86_64-pc-none checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... unknown checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking for size_t... yes checking for working volatile... yes checking for inline... inline checking whether char is unsigned... no checking for GNU-style extern inline... no checking for C99-style inline... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking for vprintf... yes checking for _doprnt... no checking for memcpy... yes checking for memmove... yes checking for strdup... yes checking for strtol... yes checking for strtoul... yes checking for EXIT_SUCCESS and EXIT_FAILURE... yes checking for cos in -lm... yes checking whether feenableexcept is declared... yes checking whether fesettrapenable is declared... no checking whether hypot is declared... yes checking whether expm1 is declared... yes checking whether acosh is declared... yes checking whether asinh is declared... yes checking whether atanh is declared... yes checking whether ldexp is declared... yes checking whether frexp is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... yes checking whether finite is declared... yes checking whether isnan is declared... yes checking whether log1p is declared... yes checking for long double stdio... yes checking for extended floating point registers... yes checking for IEEE arithmetic interface type... unknown checking for IEEE compiler flags... none checking for IEEE comparisons... yes checking for IEEE denormalized values... yes configure: creating ./config.status config.status: creating gsl_version.h config.status: creating gsl.spec config.status: creating gsl/Makefile config.status: creating test/Makefile config.status: creating err/Makefile config.status: creating sys/Makefile config.status: creating utils/Makefile config.status: creating const/Makefile config.status: creating min/Makefile config.status: creating multimin/Makefile config.status: creating ieee-utils/Makefile config.status: creating fft/Makefile config.status: creating specfunc/Makefile config.status: creating dht/Makefile config.status: creating fit/Makefile config.status: creating multifit/Makefile config.status: creating bspline/Makefile config.status: creating statistics/Makefile config.status: creating sum/Makefile config.status: creating roots/Makefile config.status: creating multiroots/Makefile config.status: creating ntuple/Makefile config.status: creating poly/Makefile config.status: creating qrng/Makefile config.status: creating rng/Makefile config.status: creating randist/Makefile config.status: creating siman/Makefile config.status: creating integration/Makefile config.status: creating interpolation/Makefile config.status: creating doc/Makefile config.status: creating block/Makefile config.status: creating vector/Makefile config.status: creating matrix/Makefile config.status: creating histogram/Makefile config.status: creating monte/Makefile config.status: creating ode-initval/Makefile config.status: creating cblas/Makefile config.status: creating blas/Makefile config.status: creating linalg/Makefile config.status: creating eigen/Makefile config.status: creating permutation/Makefile config.status: creating combination/Makefile config.status: creating multiset/Makefile config.status: creating sort/Makefile config.status: creating complex/Makefile config.status: creating diff/Makefile config.status: creating deriv/Makefile config.status: creating cheb/Makefile config.status: creating cdf/Makefile config.status: creating wavelet/Makefile config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14 all install make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' make all-recursive make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' Making all in gsl make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/gsl' rm -f gsl*.h HEADERLIST="../gsl*.h ../*/gsl*.h"; \ for h in $HEADERLIST; do \ BASENAME=`basename $h`; \ test -r $BASENAME || ln -s $h $BASENAME; \ done make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/gsl' Making all in utils make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/utils' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT placeholder.lo -MD -MP -MF .deps/placeholder.Tpo -c -o placeholder.lo placeholder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT placeholder.lo -MD -MP -MF .deps/placeholder.Tpo -c placeholder.c -o placeholder.o mv -f .deps/placeholder.Tpo .deps/placeholder.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libutils.la placeholder.lo -lm libtool: link: ar cru .libs/libutils.a placeholder.o libtool: link: ranlib .libs/libutils.a libtool: link: ( cd ".libs" && rm -f "libutils.la" && ln -s "../libutils.la" "libutils.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/utils' Making all in sys make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sys' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c -o minmax.lo minmax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c minmax.c -o minmax.o mv -f .deps/minmax.Tpo .deps/minmax.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT prec.lo -MD -MP -MF .deps/prec.Tpo -c -o prec.lo prec.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT prec.lo -MD -MP -MF .deps/prec.Tpo -c prec.c -o prec.o mv -f .deps/prec.Tpo .deps/prec.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hypot.lo -MD -MP -MF .deps/hypot.Tpo -c -o hypot.lo hypot.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hypot.lo -MD -MP -MF .deps/hypot.Tpo -c hypot.c -o hypot.o mv -f .deps/hypot.Tpo .deps/hypot.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT log1p.lo -MD -MP -MF .deps/log1p.Tpo -c -o log1p.lo log1p.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT log1p.lo -MD -MP -MF .deps/log1p.Tpo -c log1p.c -o log1p.o mv -f .deps/log1p.Tpo .deps/log1p.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT expm1.lo -MD -MP -MF .deps/expm1.Tpo -c -o expm1.lo expm1.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT expm1.lo -MD -MP -MF .deps/expm1.Tpo -c expm1.c -o expm1.o mv -f .deps/expm1.Tpo .deps/expm1.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT coerce.lo -MD -MP -MF .deps/coerce.Tpo -c -o coerce.lo coerce.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT coerce.lo -MD -MP -MF .deps/coerce.Tpo -c coerce.c -o coerce.o mv -f .deps/coerce.Tpo .deps/coerce.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT invhyp.lo -MD -MP -MF .deps/invhyp.Tpo -c -o invhyp.lo invhyp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT invhyp.lo -MD -MP -MF .deps/invhyp.Tpo -c invhyp.c -o invhyp.o mv -f .deps/invhyp.Tpo .deps/invhyp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pow_int.lo -MD -MP -MF .deps/pow_int.Tpo -c -o pow_int.lo pow_int.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pow_int.lo -MD -MP -MF .deps/pow_int.Tpo -c pow_int.c -o pow_int.o mv -f .deps/pow_int.Tpo .deps/pow_int.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT infnan.lo -MD -MP -MF .deps/infnan.Tpo -c -o infnan.lo infnan.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT infnan.lo -MD -MP -MF .deps/infnan.Tpo -c infnan.c -o infnan.o mv -f .deps/infnan.Tpo .deps/infnan.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdiv.lo -MD -MP -MF .deps/fdiv.Tpo -c -o fdiv.lo fdiv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdiv.lo -MD -MP -MF .deps/fdiv.Tpo -c fdiv.c -o fdiv.o mv -f .deps/fdiv.Tpo .deps/fdiv.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fcmp.lo -MD -MP -MF .deps/fcmp.Tpo -c -o fcmp.lo fcmp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fcmp.lo -MD -MP -MF .deps/fcmp.Tpo -c fcmp.c -o fcmp.o mv -f .deps/fcmp.Tpo .deps/fcmp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ldfrexp.lo -MD -MP -MF .deps/ldfrexp.Tpo -c -o ldfrexp.lo ldfrexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ldfrexp.lo -MD -MP -MF .deps/ldfrexp.Tpo -c ldfrexp.c -o ldfrexp.o mv -f .deps/ldfrexp.Tpo .deps/ldfrexp.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslsys.la minmax.lo prec.lo hypot.lo log1p.lo expm1.lo coerce.lo invhyp.lo pow_int.lo infnan.lo fdiv.lo fcmp.lo ldfrexp.lo -lm libtool: link: ar cru .libs/libgslsys.a minmax.o prec.o hypot.o log1p.o expm1.o coerce.o invhyp.o pow_int.o infnan.o fdiv.o fcmp.o ldfrexp.o libtool: link: ranlib .libs/libgslsys.a libtool: link: ( cd ".libs" && rm -f "libgslsys.la" && ln -s "../libgslsys.la" "libgslsys.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sys' Making all in test make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/test' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT results.lo -MD -MP -MF .deps/results.Tpo -c -o results.lo results.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT results.lo -MD -MP -MF .deps/results.Tpo -c results.c -o results.o mv -f .deps/results.Tpo .deps/results.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgsltest.la results.lo -lm libtool: link: ar cru .libs/libgsltest.a results.o libtool: link: ranlib .libs/libgsltest.a libtool: link: ( cd ".libs" && rm -f "libgsltest.la" && ln -s "../libgsltest.la" "libgsltest.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/test' Making all in err make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/err' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c -o error.lo error.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o mv -f .deps/error.Tpo .deps/error.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT stream.lo -MD -MP -MF .deps/stream.Tpo -c -o stream.lo stream.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT stream.lo -MD -MP -MF .deps/stream.Tpo -c stream.c -o stream.o mv -f .deps/stream.Tpo .deps/stream.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT message.lo -MD -MP -MF .deps/message.Tpo -c -o message.lo message.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT message.lo -MD -MP -MF .deps/message.Tpo -c message.c -o message.o mv -f .deps/message.Tpo .deps/message.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT strerror.lo -MD -MP -MF .deps/strerror.Tpo -c -o strerror.lo strerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -g -O2 -MT strerror.lo -MD -MP -MF .deps/strerror.Tpo -c strerror.c -o strerror.o mv -f .deps/strerror.Tpo .deps/strerror.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslerr.la error.lo stream.lo message.lo strerror.lo -lm libtool: link: ar cru .libs/libgslerr.a error.o stream.o message.o strerror.o libtool: link: ranlib .libs/libgslerr.a libtool: link: ( cd ".libs" && rm -f "libgslerr.la" && ln -s "../libgslerr.la" "libgslerr.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/err' Making all in const make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/const' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/const' Making all in complex make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/complex' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT math.lo -MD -MP -MF .deps/math.Tpo -c -o math.lo math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT math.lo -MD -MP -MF .deps/math.Tpo -c math.c -o math.o mv -f .deps/math.Tpo .deps/math.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c -o inline.lo inline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -o inline.o mv -f .deps/inline.Tpo .deps/inline.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslcomplex.la math.lo inline.lo -lm libtool: link: ar cru .libs/libgslcomplex.a math.o inline.o libtool: link: ranlib .libs/libgslcomplex.a libtool: link: ( cd ".libs" && rm -f "libgslcomplex.la" && ln -s "../libgslcomplex.la" "libgslcomplex.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/complex' Making all in cheb make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cheb' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c -o deriv.lo deriv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c deriv.c -o deriv.o mv -f .deps/deriv.Tpo .deps/deriv.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT eval.lo -MD -MP -MF .deps/eval.Tpo -c -o eval.lo eval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT eval.lo -MD -MP -MF .deps/eval.Tpo -c eval.c -o eval.o mv -f .deps/eval.Tpo .deps/eval.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT integ.lo -MD -MP -MF .deps/integ.Tpo -c -o integ.lo integ.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT integ.lo -MD -MP -MF .deps/integ.Tpo -c integ.c -o integ.o mv -f .deps/integ.Tpo .deps/integ.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslcheb.la deriv.lo eval.lo init.lo integ.lo -lm libtool: link: ar cru .libs/libgslcheb.a deriv.o eval.o init.o integ.o libtool: link: ranlib .libs/libgslcheb.a libtool: link: ( cd ".libs" && rm -f "libgslcheb.la" && ln -s "../libgslcheb.la" "libgslcheb.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cheb' Making all in block make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/block' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o mv -f .deps/file.Tpo .deps/file.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT block.lo -MD -MP -MF .deps/block.Tpo -c -o block.lo block.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT block.lo -MD -MP -MF .deps/block.Tpo -c block.c -o block.o mv -f .deps/block.Tpo .deps/block.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslblock.la init.lo file.lo block.lo -lm libtool: link: ar cru .libs/libgslblock.a init.o file.o block.o libtool: link: ranlib .libs/libgslblock.a libtool: link: ( cd ".libs" && rm -f "libgslblock.la" && ln -s "../libgslblock.la" "libgslblock.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/block' Making all in vector make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/vector' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o mv -f .deps/file.Tpo .deps/file.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c -o vector.lo vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c vector.c -o vector.o mv -f .deps/vector.Tpo .deps/vector.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT copy.lo -MD -MP -MF .deps/copy.Tpo -c -o copy.lo copy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT copy.lo -MD -MP -MF .deps/copy.Tpo -c copy.c -o copy.o mv -f .deps/copy.Tpo .deps/copy.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c -o swap.lo swap.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -o swap.o mv -f .deps/swap.Tpo .deps/swap.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT prop.lo -MD -MP -MF .deps/prop.Tpo -c -o prop.lo prop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT prop.lo -MD -MP -MF .deps/prop.Tpo -c prop.c -o prop.o mv -f .deps/prop.Tpo .deps/prop.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c -o minmax.lo minmax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c minmax.c -o minmax.o mv -f .deps/minmax.Tpo .deps/minmax.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT oper.lo -MD -MP -MF .deps/oper.Tpo -c -o oper.lo oper.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT oper.lo -MD -MP -MF .deps/oper.Tpo -c oper.c -o oper.o mv -f .deps/oper.Tpo .deps/oper.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT reim.lo -MD -MP -MF .deps/reim.Tpo -c -o reim.lo reim.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT reim.lo -MD -MP -MF .deps/reim.Tpo -c reim.c -o reim.o mv -f .deps/reim.Tpo .deps/reim.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT subvector.lo -MD -MP -MF .deps/subvector.Tpo -c -o subvector.lo subvector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT subvector.lo -MD -MP -MF .deps/subvector.Tpo -c subvector.c -o subvector.o mv -f .deps/subvector.Tpo .deps/subvector.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT view.lo -MD -MP -MF .deps/view.Tpo -c -o view.lo view.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT view.lo -MD -MP -MF .deps/view.Tpo -c view.c -o view.o mv -f .deps/view.Tpo .deps/view.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslvector.la init.lo file.lo vector.lo copy.lo swap.lo prop.lo minmax.lo oper.lo reim.lo subvector.lo view.lo -lm libtool: link: ar cru .libs/libgslvector.a init.o file.o vector.o copy.o swap.o prop.o minmax.o oper.o reim.o subvector.o view.o libtool: link: ranlib .libs/libgslvector.a libtool: link: ( cd ".libs" && rm -f "libgslvector.la" && ln -s "../libgslvector.la" "libgslvector.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/vector' Making all in matrix make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/matrix' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo matrix.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.c -o matrix.o mv -f .deps/matrix.Tpo .deps/matrix.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o mv -f .deps/file.Tpo .deps/file.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rowcol.lo -MD -MP -MF .deps/rowcol.Tpo -c -o rowcol.lo rowcol.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rowcol.lo -MD -MP -MF .deps/rowcol.Tpo -c rowcol.c -o rowcol.o mv -f .deps/rowcol.Tpo .deps/rowcol.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c -o swap.lo swap.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT swap.lo -MD -MP -MF .deps/swap.Tpo -c swap.c -o swap.o mv -f .deps/swap.Tpo .deps/swap.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT copy.lo -MD -MP -MF .deps/copy.Tpo -c -o copy.lo copy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT copy.lo -MD -MP -MF .deps/copy.Tpo -c copy.c -o copy.o mv -f .deps/copy.Tpo .deps/copy.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c -o minmax.lo minmax.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT minmax.lo -MD -MP -MF .deps/minmax.Tpo -c minmax.c -o minmax.o mv -f .deps/minmax.Tpo .deps/minmax.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT prop.lo -MD -MP -MF .deps/prop.Tpo -c -o prop.lo prop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT prop.lo -MD -MP -MF .deps/prop.Tpo -c prop.c -o prop.o mv -f .deps/prop.Tpo .deps/prop.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT oper.lo -MD -MP -MF .deps/oper.Tpo -c -o oper.lo oper.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT oper.lo -MD -MP -MF .deps/oper.Tpo -c oper.c -o oper.o mv -f .deps/oper.Tpo .deps/oper.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT getset.lo -MD -MP -MF .deps/getset.Tpo -c -o getset.lo getset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT getset.lo -MD -MP -MF .deps/getset.Tpo -c getset.c -o getset.o mv -f .deps/getset.Tpo .deps/getset.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT view.lo -MD -MP -MF .deps/view.Tpo -c -o view.lo view.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT view.lo -MD -MP -MF .deps/view.Tpo -c view.c -o view.o mv -f .deps/view.Tpo .deps/view.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT submatrix.lo -MD -MP -MF .deps/submatrix.Tpo -c -o submatrix.lo submatrix.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT submatrix.lo -MD -MP -MF .deps/submatrix.Tpo -c submatrix.c -o submatrix.o mv -f .deps/submatrix.Tpo .deps/submatrix.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslmatrix.la init.lo matrix.lo file.lo rowcol.lo swap.lo copy.lo minmax.lo prop.lo oper.lo getset.lo view.lo submatrix.lo -lm libtool: link: ar cru .libs/libgslmatrix.a init.o matrix.o file.o rowcol.o swap.o copy.o minmax.o prop.o oper.o getset.o view.o submatrix.o libtool: link: ranlib .libs/libgslmatrix.a libtool: link: ( cd ".libs" && rm -f "libgslmatrix.la" && ln -s "../libgslmatrix.la" "libgslmatrix.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/matrix' Making all in permutation make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/permutation' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o mv -f .deps/file.Tpo .deps/file.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permutation.lo -MD -MP -MF .deps/permutation.Tpo -c -o permutation.lo permutation.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permutation.lo -MD -MP -MF .deps/permutation.Tpo -c permutation.c -o permutation.o mv -f .deps/permutation.Tpo .deps/permutation.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permute.lo -MD -MP -MF .deps/permute.Tpo -c -o permute.lo permute.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT permute.lo -MD -MP -MF .deps/permute.Tpo -c permute.c -o permute.o mv -f .deps/permute.Tpo .deps/permute.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT canonical.lo -MD -MP -MF .deps/canonical.Tpo -c -o canonical.lo canonical.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT canonical.lo -MD -MP -MF .deps/canonical.Tpo -c canonical.c -o canonical.o mv -f .deps/canonical.Tpo .deps/canonical.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c -o inline.lo inline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -o inline.o mv -f .deps/inline.Tpo .deps/inline.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslpermutation.la init.lo file.lo permutation.lo permute.lo canonical.lo inline.lo -lm libtool: link: ar cru .libs/libgslpermutation.a init.o file.o permutation.o permute.o canonical.o inline.o libtool: link: ranlib .libs/libgslpermutation.a libtool: link: ( cd ".libs" && rm -f "libgslpermutation.la" && ln -s "../libgslpermutation.la" "libgslpermutation.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/permutation' Making all in combination make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/combination' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o mv -f .deps/file.Tpo .deps/file.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT combination.lo -MD -MP -MF .deps/combination.Tpo -c -o combination.lo combination.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT combination.lo -MD -MP -MF .deps/combination.Tpo -c combination.c -o combination.o mv -f .deps/combination.Tpo .deps/combination.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c -o inline.lo inline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -o inline.o mv -f .deps/inline.Tpo .deps/inline.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslcombination.la init.lo file.lo combination.lo inline.lo -lm libtool: link: ar cru .libs/libgslcombination.a init.o file.o combination.o inline.o libtool: link: ranlib .libs/libgslcombination.a libtool: link: ( cd ".libs" && rm -f "libgslcombination.la" && ln -s "../libgslcombination.la" "libgslcombination.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/combination' Making all in multiset make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiset' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H 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ctrsm.lo ctrsv.lo zaxpy.lo zcopy.lo zdotc_sub.lo zdotu_sub.lo zdscal.lo zgbmv.lo zgemm.lo zgemv.lo zgerc.lo zgeru.lo zhbmv.lo zhemm.lo zhemv.lo zher.lo zher2.lo zher2k.lo zherk.lo zhpmv.lo zhpr.lo zhpr2.lo zscal.lo zswap.lo zsymm.lo zsyr2k.lo zsyrk.lo ztbmv.lo ztbsv.lo ztpmv.lo ztpsv.lo ztrmm.lo ztrmv.lo ztrsm.lo ztrsv.lo icamax.lo idamax.lo isamax.lo izamax.lo xerbla.lo -lm libtool: link: ar cru .libs/libgslcblas.a sasum.o saxpy.o scasum.o scnrm2.o scopy.o sdot.o sdsdot.o sgbmv.o sgemm.o sgemv.o sger.o snrm2.o srot.o srotg.o srotm.o srotmg.o ssbmv.o sscal.o sspmv.o sspr.o sspr2.o sswap.o ssymm.o ssymv.o ssyr.o ssyr2.o ssyr2k.o ssyrk.o stbmv.o stbsv.o stpmv.o stpsv.o strmm.o strmv.o strsm.o strsv.o dasum.o daxpy.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o drotm.o drotmg.o dsbmv.o dscal.o dsdot.o dspmv.o dspr.o dspr2.o dswap.o dsymm.o dsymv.o dsyr.o dsyr2.o dsyr2k.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dzasum.o dznrm2.o caxpy.o ccopy.o cdotc_sub.o cdotu_sub.o cgbmv.o cgemm.o cgemv.o cgerc.o cgeru.o chbmv.o chemm.o chemv.o cher.o cher2.o cher2k.o cherk.o chpmv.o chpr.o chpr2.o cscal.o csscal.o cswap.o csymm.o csyr2k.o csyrk.o ctbmv.o ctbsv.o ctpmv.o ctpsv.o ctrmm.o ctrmv.o ctrsm.o ctrsv.o zaxpy.o zcopy.o zdotc_sub.o zdotu_sub.o zdscal.o zgbmv.o zgemm.o zgemv.o zgerc.o zgeru.o zhbmv.o zhemm.o zhemv.o zher.o zher2.o zher2k.o zherk.o zhpmv.o zhpr.o zhpr2.o zscal.o zswap.o zsymm.o zsyr2k.o zsyrk.o ztbmv.o ztbsv.o ztpmv.o ztpsv.o ztrmm.o ztrmv.o ztrsm.o ztrsv.o icamax.o idamax.o isamax.o izamax.o xerbla.o libtool: link: ranlib .libs/libgslcblas.a libtool: link: ( cd ".libs" && rm -f "libgslcblas.la" && ln -s "../libgslcblas.la" "libgslcblas.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cblas' Making all in blas make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/blas' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT blas.lo -MD -MP -MF .deps/blas.Tpo -c -o blas.lo blas.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT blas.lo -MD -MP -MF .deps/blas.Tpo -c blas.c -o blas.o mv -f .deps/blas.Tpo .deps/blas.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslblas.la blas.lo -lm libtool: link: ar cru .libs/libgslblas.a blas.o libtool: link: ranlib .libs/libgslblas.a libtool: link: ( cd ".libs" && rm -f "libgslblas.la" && ln -s "../libgslblas.la" "libgslblas.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/blas' Making all in linalg make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/linalg' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multiply.lo -MD -MP -MF .deps/multiply.Tpo -c -o multiply.lo multiply.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multiply.lo -MD -MP -MF .deps/multiply.Tpo -c multiply.c -o multiply.o mv -f .deps/multiply.Tpo .deps/multiply.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT exponential.lo -MD -MP -MF .deps/exponential.Tpo -c -o exponential.lo exponential.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT exponential.lo -MD -MP -MF .deps/exponential.Tpo -c exponential.c -o exponential.o mv -f .deps/exponential.Tpo .deps/exponential.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT tridiag.lo -MD -MP -MF .deps/tridiag.Tpo -c -o tridiag.lo tridiag.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT tridiag.lo -MD -MP -MF .deps/tridiag.Tpo -c tridiag.c -o tridiag.o mv -f .deps/tridiag.Tpo .deps/tridiag.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT lu.lo -MD -MP -MF .deps/lu.Tpo -c -o lu.lo lu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT lu.lo -MD -MP -MF .deps/lu.Tpo -c lu.c -o lu.o mv -f .deps/lu.Tpo .deps/lu.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT luc.lo -MD -MP -MF .deps/luc.Tpo -c -o luc.lo luc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT luc.lo -MD -MP -MF .deps/luc.Tpo -c luc.c -o luc.o mv -f .deps/luc.Tpo .deps/luc.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hh.lo -MD -MP -MF .deps/hh.Tpo -c -o hh.lo hh.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hh.lo -MD -MP -MF .deps/hh.Tpo -c hh.c -o hh.o mv -f .deps/hh.Tpo .deps/hh.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT qr.lo -MD -MP -MF .deps/qr.Tpo -c -o qr.lo qr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT qr.lo -MD -MP -MF .deps/qr.Tpo -c qr.c -o qr.o mv -f .deps/qr.Tpo .deps/qr.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT qrpt.lo -MD -MP -MF .deps/qrpt.Tpo -c -o qrpt.lo qrpt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT qrpt.lo -MD -MP -MF .deps/qrpt.Tpo -c qrpt.c -o qrpt.o mv -f .deps/qrpt.Tpo .deps/qrpt.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT lq.lo -MD -MP -MF .deps/lq.Tpo -c -o lq.lo lq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT lq.lo -MD -MP -MF .deps/lq.Tpo -c lq.c -o lq.o mv -f .deps/lq.Tpo .deps/lq.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ptlq.lo -MD -MP -MF .deps/ptlq.Tpo -c -o ptlq.lo ptlq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT ptlq.lo -MD -MP -MF .deps/ptlq.Tpo -c ptlq.c -o ptlq.o mv -f .deps/ptlq.Tpo .deps/ptlq.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT svd.lo -MD -MP -MF .deps/svd.Tpo -c -o svd.lo svd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT svd.lo -MD -MP -MF .deps/svd.Tpo -c svd.c -o svd.o mv -f .deps/svd.Tpo .deps/svd.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT householder.lo -MD -MP -MF .deps/householder.Tpo -c -o householder.lo householder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT householder.lo -MD -MP -MF .deps/householder.Tpo -c householder.c -o householder.o mv -f .deps/householder.Tpo .deps/householder.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT householdercomplex.lo -MD -MP -MF .deps/householdercomplex.Tpo -c -o householdercomplex.lo householdercomplex.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT householdercomplex.lo -MD -MP -MF .deps/householdercomplex.Tpo -c householdercomplex.c -o householdercomplex.o mv -f .deps/householdercomplex.Tpo .deps/householdercomplex.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hessenberg.lo -MD -MP -MF .deps/hessenberg.Tpo -c -o hessenberg.lo hessenberg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hessenberg.lo -MD -MP -MF .deps/hessenberg.Tpo -c hessenberg.c -o hessenberg.o mv -f .deps/hessenberg.Tpo .deps/hessenberg.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hesstri.lo -MD -MP -MF .deps/hesstri.Tpo -c -o hesstri.lo hesstri.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hesstri.lo -MD -MP -MF .deps/hesstri.Tpo -c hesstri.c -o hesstri.o mv -f .deps/hesstri.Tpo .deps/hesstri.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT cholesky.lo -MD -MP -MF .deps/cholesky.Tpo -c -o cholesky.lo cholesky.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT cholesky.lo -MD -MP -MF .deps/cholesky.Tpo -c cholesky.c -o cholesky.o mv -f .deps/cholesky.Tpo .deps/cholesky.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT choleskyc.lo -MD -MP -MF .deps/choleskyc.Tpo -c -o choleskyc.lo choleskyc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT choleskyc.lo -MD -MP -MF .deps/choleskyc.Tpo -c choleskyc.c -o choleskyc.o mv -f .deps/choleskyc.Tpo .deps/choleskyc.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT symmtd.lo -MD -MP -MF .deps/symmtd.Tpo -c -o symmtd.lo symmtd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT symmtd.lo -MD -MP -MF .deps/symmtd.Tpo -c symmtd.c -o symmtd.o mv -f .deps/symmtd.Tpo .deps/symmtd.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hermtd.lo -MD -MP -MF .deps/hermtd.Tpo -c -o hermtd.lo hermtd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hermtd.lo -MD -MP -MF .deps/hermtd.Tpo -c hermtd.c -o hermtd.o mv -f .deps/hermtd.Tpo .deps/hermtd.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bidiag.lo -MD -MP -MF .deps/bidiag.Tpo -c -o bidiag.lo bidiag.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bidiag.lo -MD -MP -MF .deps/bidiag.Tpo -c bidiag.c -o bidiag.o mv -f .deps/bidiag.Tpo .deps/bidiag.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT balance.lo -MD -MP -MF .deps/balance.Tpo -c -o balance.lo balance.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT balance.lo -MD -MP -MF .deps/balance.Tpo -c balance.c -o balance.o mv -f .deps/balance.Tpo .deps/balance.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT balancemat.lo -MD -MP -MF .deps/balancemat.Tpo -c -o balancemat.lo balancemat.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT balancemat.lo -MD -MP -MF .deps/balancemat.Tpo -c balancemat.c -o balancemat.o mv -f .deps/balancemat.Tpo .deps/balancemat.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgsllinalg.la multiply.lo exponential.lo tridiag.lo lu.lo luc.lo hh.lo qr.lo qrpt.lo lq.lo ptlq.lo svd.lo householder.lo householdercomplex.lo hessenberg.lo hesstri.lo cholesky.lo choleskyc.lo symmtd.lo hermtd.lo bidiag.lo balance.lo balancemat.lo -lm libtool: link: ar cru .libs/libgsllinalg.a multiply.o exponential.o tridiag.o lu.o luc.o hh.o qr.o qrpt.o lq.o ptlq.o svd.o householder.o householdercomplex.o hessenberg.o hesstri.o cholesky.o choleskyc.o symmtd.o hermtd.o bidiag.o balance.o balancemat.o libtool: link: ranlib .libs/libgsllinalg.a libtool: link: ( cd ".libs" && rm -f "libgsllinalg.la" && ln -s "../libgsllinalg.la" "libgsllinalg.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/linalg' Making all in eigen make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/eigen' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT jacobi.lo -MD -MP -MF .deps/jacobi.Tpo -c -o jacobi.lo jacobi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT jacobi.lo -MD -MP -MF .deps/jacobi.Tpo -c jacobi.c -o jacobi.o mv -f .deps/jacobi.Tpo .deps/jacobi.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT symm.lo -MD -MP -MF .deps/symm.Tpo -c -o symm.lo symm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT symm.lo -MD -MP -MF .deps/symm.Tpo -c symm.c -o symm.o mv -f .deps/symm.Tpo .deps/symm.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT symmv.lo -MD -MP -MF .deps/symmv.Tpo -c -o symmv.lo symmv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT symmv.lo -MD -MP -MF .deps/symmv.Tpo -c symmv.c -o symmv.o mv -f .deps/symmv.Tpo .deps/symmv.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT nonsymm.lo -MD -MP -MF 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.deps/schur.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgsleigen.la jacobi.lo symm.lo symmv.lo nonsymm.lo nonsymmv.lo herm.lo hermv.lo gensymm.lo gensymmv.lo genherm.lo genhermv.lo gen.lo genv.lo sort.lo francis.lo schur.lo -lm libtool: link: ar cru .libs/libgsleigen.a jacobi.o symm.o symmv.o nonsymm.o nonsymmv.o herm.o hermv.o gensymm.o gensymmv.o genherm.o genhermv.o gen.o genv.o sort.o francis.o schur.o libtool: link: ranlib .libs/libgsleigen.a libtool: link: ( cd ".libs" && rm -f "libgsleigen.la" && ln -s "../libgsleigen.la" "libgsleigen.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/eigen' Making all in specfunc make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/specfunc' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT airy.lo -MD -MP -MF .deps/airy.Tpo -c -o airy.lo airy.c libtool: compile: gcc 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/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bessel_sequence.lo -MD -MP -MF .deps/bessel_sequence.Tpo -c -o bessel_sequence.lo bessel_sequence.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bessel_sequence.lo -MD -MP -MF .deps/bessel_sequence.Tpo -c bessel_sequence.c -o bessel_sequence.o mv -f .deps/bessel_sequence.Tpo .deps/bessel_sequence.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT beta.lo -MD -MP -MF .deps/beta.Tpo -c -o beta.lo beta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT beta.lo -MD -MP -MF .deps/beta.Tpo -c beta.c -o beta.o mv -f .deps/beta.Tpo .deps/beta.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT beta_inc.lo -MD -MP -MF .deps/beta_inc.Tpo -c -o beta_inc.lo beta_inc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT beta_inc.lo -MD -MP -MF .deps/beta_inc.Tpo -c beta_inc.c -o beta_inc.o 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bessel_J1.o bessel_Jn.o bessel_Jnu.o bessel_K0.o bessel_K1.o bessel_Kn.o bessel_Knu.o bessel_Y0.o bessel_Y1.o bessel_Yn.o bessel_Ynu.o bessel_amp_phase.o bessel_i.o bessel_j.o bessel_k.o bessel_olver.o bessel_temme.o bessel_y.o bessel_zero.o bessel_sequence.o beta.o beta_inc.o clausen.o coulomb.o coupling.o coulomb_bound.o dawson.o debye.o dilog.o elementary.o ellint.o elljac.o erfc.o exp.o expint.o expint3.o fermi_dirac.o gegenbauer.o gamma.o gamma_inc.o hyperg_0F1.o hyperg_2F0.o hyperg_1F1.o hyperg_2F1.o hyperg_U.o hyperg.o laguerre.o lambert.o legendre_H3d.o legendre_Qn.o legendre_con.o legendre_poly.o log.o mathieu_angfunc.o mathieu_charv.o mathieu_coeff.o mathieu_radfunc.o mathieu_workspace.o poch.o pow_int.o psi.o result.o shint.o sinint.o synchrotron.o transport.o trig.o zeta.o libtool: link: ranlib .libs/libgslspecfunc.a libtool: link: ( cd ".libs" && rm -f "libgslspecfunc.la" && ln -s "../libgslspecfunc.la" "libgslspecfunc.la" ) make[3]: Leaving directory 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--tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT shuffle.lo -MD -MP -MF .deps/shuffle.Tpo -c -o shuffle.lo shuffle.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT shuffle.lo -MD -MP -MF .deps/shuffle.Tpo -c shuffle.c -o shuffle.o mv -f .deps/shuffle.Tpo .deps/shuffle.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sphere.lo -MD -MP -MF .deps/sphere.Tpo -c -o sphere.lo sphere.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT sphere.lo -MD -MP -MF .deps/sphere.Tpo -c sphere.c -o sphere.o mv -f .deps/sphere.Tpo .deps/sphere.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT tdist.lo -MD -MP -MF .deps/tdist.Tpo -c -o tdist.lo tdist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT tdist.lo -MD -MP -MF .deps/tdist.Tpo -c tdist.c -o tdist.o mv -f .deps/tdist.Tpo .deps/tdist.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT weibull.lo -MD -MP -MF .deps/weibull.Tpo -c -o weibull.lo weibull.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT weibull.lo -MD -MP -MF .deps/weibull.Tpo -c weibull.c -o weibull.o mv -f .deps/weibull.Tpo .deps/weibull.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT landau.lo -MD -MP -MF .deps/landau.Tpo -c -o landau.lo landau.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT landau.lo -MD -MP -MF .deps/landau.Tpo -c landau.c -o landau.o mv -f .deps/landau.Tpo .deps/landau.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT binomial_tpe.lo -MD -MP -MF .deps/binomial_tpe.Tpo -c -o binomial_tpe.lo binomial_tpe.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT binomial_tpe.lo -MD -MP -MF .deps/binomial_tpe.Tpo -c binomial_tpe.c -o binomial_tpe.o mv -f .deps/binomial_tpe.Tpo .deps/binomial_tpe.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslrandist.la bernoulli.lo beta.lo bigauss.lo binomial.lo cauchy.lo chisq.lo dirichlet.lo discrete.lo erlang.lo exponential.lo exppow.lo fdist.lo flat.lo gamma.lo gauss.lo gausszig.lo gausstail.lo geometric.lo gumbel.lo hyperg.lo laplace.lo levy.lo logarithmic.lo logistic.lo lognormal.lo multinomial.lo nbinomial.lo pareto.lo pascal.lo poisson.lo rayleigh.lo shuffle.lo sphere.lo tdist.lo weibull.lo landau.lo binomial_tpe.lo -lm libtool: link: ar cru .libs/libgslrandist.a bernoulli.o beta.o bigauss.o binomial.o cauchy.o chisq.o dirichlet.o discrete.o erlang.o exponential.o exppow.o fdist.o flat.o gamma.o gauss.o gausszig.o gausstail.o geometric.o gumbel.o hyperg.o laplace.o levy.o logarithmic.o logistic.o lognormal.o multinomial.o nbinomial.o pareto.o pascal.o poisson.o rayleigh.o shuffle.o sphere.o tdist.o weibull.o landau.o binomial_tpe.o libtool: link: ranlib .libs/libgslrandist.a libtool: link: ( cd ".libs" && rm -f "libgslrandist.la" && ln -s "../libgslrandist.la" "libgslrandist.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/randist' Making all in fft make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fft' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dft.lo -MD -MP -MF .deps/dft.Tpo -c -o dft.lo dft.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dft.lo -MD -MP -MF .deps/dft.Tpo -c dft.c -o dft.o mv -f .deps/dft.Tpo .deps/dft.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fft.lo -MD -MP -MF .deps/fft.Tpo -c -o fft.lo fft.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fft.lo -MD -MP -MF .deps/fft.Tpo -c fft.c -o fft.o mv -f .deps/fft.Tpo .deps/fft.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslfft.la dft.lo fft.lo -lm libtool: link: ar cru .libs/libgslfft.a dft.o fft.o libtool: link: ranlib .libs/libgslfft.a libtool: link: ( cd ".libs" && rm -f "libgslfft.la" && ln -s "../libgslfft.la" "libgslfft.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fft' Making all in poly make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/poly' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dd.lo -MD -MP -MF .deps/dd.Tpo -c -o dd.lo dd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dd.lo -MD -MP -MF .deps/dd.Tpo -c dd.c -o dd.o mv -f .deps/dd.Tpo .deps/dd.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT eval.lo -MD -MP -MF .deps/eval.Tpo -c -o eval.lo eval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT eval.lo -MD -MP -MF .deps/eval.Tpo -c eval.c -o eval.o mv -f .deps/eval.Tpo .deps/eval.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_quadratic.lo -MD -MP -MF .deps/solve_quadratic.Tpo -c -o solve_quadratic.lo solve_quadratic.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_quadratic.lo -MD -MP -MF .deps/solve_quadratic.Tpo -c solve_quadratic.c -o solve_quadratic.o mv -f .deps/solve_quadratic.Tpo .deps/solve_quadratic.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_cubic.lo -MD -MP -MF .deps/solve_cubic.Tpo -c -o solve_cubic.lo solve_cubic.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT solve_cubic.lo -MD -MP -MF .deps/solve_cubic.Tpo -c solve_cubic.c -o solve_cubic.o mv -f .deps/solve_cubic.Tpo .deps/solve_cubic.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_quadratic.lo -MD -MP -MF .deps/zsolve_quadratic.Tpo -c -o zsolve_quadratic.lo zsolve_quadratic.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_quadratic.lo -MD -MP -MF .deps/zsolve_quadratic.Tpo -c zsolve_quadratic.c -o zsolve_quadratic.o mv -f .deps/zsolve_quadratic.Tpo .deps/zsolve_quadratic.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_cubic.lo -MD -MP -MF .deps/zsolve_cubic.Tpo -c -o zsolve_cubic.lo zsolve_cubic.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_cubic.lo -MD -MP -MF .deps/zsolve_cubic.Tpo -c zsolve_cubic.c -o zsolve_cubic.o mv -f .deps/zsolve_cubic.Tpo .deps/zsolve_cubic.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve.lo -MD -MP -MF .deps/zsolve.Tpo -c -o zsolve.lo zsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve.lo -MD -MP -MF .deps/zsolve.Tpo -c zsolve.c -o zsolve.o mv -f .deps/zsolve.Tpo .deps/zsolve.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_init.lo -MD -MP -MF .deps/zsolve_init.Tpo -c -o zsolve_init.lo zsolve_init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT zsolve_init.lo -MD -MP -MF .deps/zsolve_init.Tpo -c zsolve_init.c -o zsolve_init.o mv -f .deps/zsolve_init.Tpo .deps/zsolve_init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c -o deriv.lo deriv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c deriv.c -o deriv.o mv -f .deps/deriv.Tpo .deps/deriv.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslpoly.la dd.lo eval.lo solve_quadratic.lo solve_cubic.lo zsolve_quadratic.lo zsolve_cubic.lo zsolve.lo zsolve_init.lo deriv.lo -lm libtool: link: ar cru .libs/libgslpoly.a dd.o eval.o solve_quadratic.o solve_cubic.o zsolve_quadratic.o zsolve_cubic.o zsolve.o zsolve_init.o deriv.o libtool: link: ranlib .libs/libgslpoly.a libtool: link: ( cd ".libs" && rm -f "libgslpoly.la" && ln -s "../libgslpoly.la" "libgslpoly.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/poly' Making all in fit make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fit' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT linear.lo -MD -MP -MF .deps/linear.Tpo -c -o linear.lo linear.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT linear.lo -MD -MP -MF .deps/linear.Tpo -c linear.c -o linear.o mv -f .deps/linear.Tpo .deps/linear.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslfit.la linear.lo -lm libtool: link: ar cru .libs/libgslfit.a linear.o libtool: link: ranlib .libs/libgslfit.a libtool: link: ( cd ".libs" && rm -f "libgslfit.la" && ln -s "../libgslfit.la" "libgslfit.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fit' Making all in multifit make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multifit' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multilinear.lo -MD -MP -MF .deps/multilinear.Tpo -c -o multilinear.lo multilinear.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT multilinear.lo -MD -MP -MF .deps/multilinear.Tpo -c multilinear.c -o multilinear.o mv -f .deps/multilinear.Tpo .deps/multilinear.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT work.lo -MD -MP -MF .deps/work.Tpo -c -o work.lo work.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT work.lo -MD -MP -MF .deps/work.Tpo -c work.c -o work.o mv -f .deps/work.Tpo .deps/work.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT lmder.lo -MD -MP -MF .deps/lmder.Tpo -c -o lmder.lo lmder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT lmder.lo -MD -MP -MF .deps/lmder.Tpo -c lmder.c -o lmder.o mv -f .deps/lmder.Tpo .deps/lmder.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fsolver.lo -MD -MP -MF .deps/fsolver.Tpo -c -o fsolver.lo fsolver.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fsolver.lo -MD -MP -MF .deps/fsolver.Tpo -c fsolver.c -o fsolver.o mv -f .deps/fsolver.Tpo .deps/fsolver.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdfsolver.lo -MD -MP -MF .deps/fdfsolver.Tpo -c -o fdfsolver.lo fdfsolver.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdfsolver.lo -MD -MP -MF .deps/fdfsolver.Tpo -c fdfsolver.c -o fdfsolver.o mv -f .deps/fdfsolver.Tpo .deps/fdfsolver.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT convergence.lo -MD -MP -MF .deps/convergence.Tpo -c -o convergence.lo convergence.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT convergence.lo -MD -MP -MF .deps/convergence.Tpo -c convergence.c -o convergence.o mv -f .deps/convergence.Tpo .deps/convergence.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gradient.lo -MD -MP -MF .deps/gradient.Tpo -c -o gradient.lo gradient.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gradient.lo -MD -MP -MF .deps/gradient.Tpo -c gradient.c -o gradient.o mv -f .deps/gradient.Tpo .deps/gradient.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT covar.lo -MD -MP -MF .deps/covar.Tpo -c -o covar.lo covar.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT covar.lo -MD -MP -MF .deps/covar.Tpo -c covar.c -o covar.o mv -f .deps/covar.Tpo .deps/covar.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslmultifit.la multilinear.lo work.lo lmder.lo fsolver.lo fdfsolver.lo convergence.lo gradient.lo covar.lo -lm libtool: link: ar cru .libs/libgslmultifit.a multilinear.o work.o lmder.o fsolver.o fdfsolver.o convergence.o gradient.o covar.o libtool: link: ranlib .libs/libgslmultifit.a libtool: link: ( cd ".libs" && rm -f "libgslmultifit.la" && ln -s "../libgslmultifit.la" "libgslmultifit.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multifit' Making all in statistics make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/statistics' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT mean.lo -MD -MP -MF .deps/mean.Tpo -c -o mean.lo mean.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT mean.lo -MD -MP -MF .deps/mean.Tpo -c mean.c -o mean.o mv -f .deps/mean.Tpo .deps/mean.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT variance.lo -MD -MP -MF .deps/variance.Tpo -c -o variance.lo variance.c libtool: compile: gcc -DHAVE_CONFIG_H 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wkurtosis.o mv -f .deps/wkurtosis.Tpo .deps/wkurtosis.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslstatistics.la mean.lo variance.lo absdev.lo skew.lo kurtosis.lo lag1.lo p_variance.lo minmax.lo ttest.lo median.lo covariance.lo quantiles.lo wmean.lo wvariance.lo wabsdev.lo wskew.lo wkurtosis.lo -lm libtool: link: ar cru .libs/libgslstatistics.a mean.o variance.o absdev.o skew.o kurtosis.o lag1.o p_variance.o minmax.o ttest.o median.o covariance.o quantiles.o wmean.o wvariance.o wabsdev.o wskew.o wkurtosis.o libtool: link: ranlib .libs/libgslstatistics.a libtool: link: ( cd ".libs" && rm -f "libgslstatistics.la" && ln -s "../libgslstatistics.la" "libgslstatistics.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/statistics' Making all in siman make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/siman' /bin/sh ../libtool --tag=CC --mode=compile gcc 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"libgslintegration.la" && ln -s "../libgslintegration.la" "libgslintegration.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/integration' Making all in interpolation make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/interpolation' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT accel.lo -MD -MP -MF .deps/accel.Tpo -c -o accel.lo accel.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT accel.lo -MD -MP -MF .deps/accel.Tpo -c accel.c -o accel.o mv -f .deps/accel.Tpo .deps/accel.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT akima.lo -MD -MP -MF .deps/akima.Tpo -c -o akima.lo akima.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT akima.lo -MD -MP -MF .deps/akima.Tpo -c akima.c -o akima.o mv -f .deps/akima.Tpo .deps/akima.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT cspline.lo -MD -MP -MF .deps/cspline.Tpo -c -o cspline.lo cspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT cspline.lo -MD -MP -MF .deps/cspline.Tpo -c cspline.c -o cspline.o mv -f .deps/cspline.Tpo .deps/cspline.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT interp.lo -MD -MP -MF .deps/interp.Tpo -c -o interp.lo interp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT interp.lo -MD -MP -MF .deps/interp.Tpo -c interp.c -o interp.o mv -f .deps/interp.Tpo .deps/interp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT linear.lo -MD -MP -MF .deps/linear.Tpo -c -o linear.lo linear.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT linear.lo -MD -MP -MF .deps/linear.Tpo -c linear.c -o linear.o mv -f .deps/linear.Tpo .deps/linear.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spline.lo -MD -MP -MF .deps/spline.Tpo -c -o spline.lo spline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT spline.lo -MD -MP -MF .deps/spline.Tpo -c spline.c -o spline.o mv -f .deps/spline.Tpo .deps/spline.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT poly.lo -MD -MP -MF .deps/poly.Tpo -c -o poly.lo poly.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT poly.lo -MD -MP -MF .deps/poly.Tpo -c poly.c -o poly.o mv -f .deps/poly.Tpo .deps/poly.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c -o inline.lo inline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT inline.lo -MD -MP -MF .deps/inline.Tpo -c inline.c -o inline.o mv -f .deps/inline.Tpo .deps/inline.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslinterpolation.la accel.lo akima.lo cspline.lo interp.lo linear.lo spline.lo poly.lo inline.lo -lm libtool: link: ar cru .libs/libgslinterpolation.a accel.o akima.o cspline.o interp.o linear.o spline.o poly.o inline.o libtool: link: ranlib .libs/libgslinterpolation.a libtool: link: ( cd ".libs" && rm -f "libgslinterpolation.la" && ln -s "../libgslinterpolation.la" "libgslinterpolation.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/interpolation' Making all in histogram make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/histogram' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT add.lo -MD -MP -MF .deps/add.Tpo -c -o add.lo add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT add.lo -MD -MP -MF .deps/add.Tpo -c add.c -o add.o mv -f .deps/add.Tpo .deps/add.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT get.lo -MD -MP -MF .deps/get.Tpo -c -o get.lo get.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT get.lo -MD -MP -MF .deps/get.Tpo -c get.c -o get.o mv -f .deps/get.Tpo .deps/get.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init.lo -MD -MP -MF .deps/init.Tpo -c init.c -o init.o mv -f .deps/init.Tpo .deps/init.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT params.lo -MD -MP -MF .deps/params.Tpo -c -o params.lo params.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT params.lo -MD -MP -MF .deps/params.Tpo -c params.c -o params.o mv -f .deps/params.Tpo .deps/params.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT reset.lo -MD -MP -MF .deps/reset.Tpo -c -o reset.lo reset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT reset.lo -MD -MP -MF .deps/reset.Tpo -c reset.c -o reset.o mv -f .deps/reset.Tpo .deps/reset.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file.lo -MD -MP -MF .deps/file.Tpo -c file.c -o file.o mv -f .deps/file.Tpo .deps/file.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pdf.lo -MD -MP -MF .deps/pdf.Tpo -c -o pdf.lo pdf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pdf.lo -MD -MP -MF .deps/pdf.Tpo -c pdf.c -o pdf.o mv -f .deps/pdf.Tpo .deps/pdf.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT add2d.lo -MD -MP -MF .deps/add2d.Tpo -c -o add2d.lo add2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT add2d.lo -MD -MP -MF .deps/add2d.Tpo -c add2d.c -o add2d.o mv -f .deps/add2d.Tpo .deps/add2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT get2d.lo -MD -MP -MF .deps/get2d.Tpo -c -o get2d.lo get2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT get2d.lo -MD -MP -MF .deps/get2d.Tpo -c get2d.c -o get2d.o mv -f .deps/get2d.Tpo .deps/get2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init2d.lo -MD -MP -MF .deps/init2d.Tpo -c -o init2d.lo init2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT init2d.lo -MD -MP -MF .deps/init2d.Tpo -c init2d.c -o init2d.o mv -f .deps/init2d.Tpo .deps/init2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT params2d.lo -MD -MP -MF .deps/params2d.Tpo -c -o params2d.lo params2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT params2d.lo -MD -MP -MF .deps/params2d.Tpo -c params2d.c -o params2d.o mv -f .deps/params2d.Tpo .deps/params2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT reset2d.lo -MD -MP -MF .deps/reset2d.Tpo -c -o reset2d.lo reset2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT reset2d.lo -MD -MP -MF .deps/reset2d.Tpo -c reset2d.c -o reset2d.o mv -f .deps/reset2d.Tpo .deps/reset2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file2d.lo -MD -MP -MF .deps/file2d.Tpo -c -o file2d.lo file2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT file2d.lo -MD -MP -MF .deps/file2d.Tpo -c file2d.c -o file2d.o mv -f .deps/file2d.Tpo .deps/file2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pdf2d.lo -MD -MP -MF .deps/pdf2d.Tpo -c -o pdf2d.lo pdf2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT pdf2d.lo -MD -MP -MF .deps/pdf2d.Tpo -c pdf2d.c -o pdf2d.o mv -f .deps/pdf2d.Tpo .deps/pdf2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT 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../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT copy2d.lo -MD -MP -MF .deps/copy2d.Tpo -c -o copy2d.lo copy2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT copy2d.lo -MD -MP -MF .deps/copy2d.Tpo -c copy2d.c -o copy2d.o mv -f .deps/copy2d.Tpo .deps/copy2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT maxval.lo -MD -MP -MF .deps/maxval.Tpo -c -o maxval.lo maxval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT maxval.lo -MD -MP -MF .deps/maxval.Tpo -c maxval.c -o maxval.o mv -f .deps/maxval.Tpo .deps/maxval.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT maxval2d.lo -MD -MP -MF .deps/maxval2d.Tpo -c -o maxval2d.lo maxval2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT maxval2d.lo -MD -MP -MF .deps/maxval2d.Tpo -c maxval2d.c -o maxval2d.o mv -f .deps/maxval2d.Tpo .deps/maxval2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT oper.lo -MD -MP -MF .deps/oper.Tpo -c -o oper.lo oper.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT oper.lo -MD -MP -MF .deps/oper.Tpo -c oper.c -o oper.o mv -f .deps/oper.Tpo .deps/oper.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT oper2d.lo -MD -MP -MF .deps/oper2d.Tpo -c -o oper2d.lo oper2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT oper2d.lo -MD -MP -MF .deps/oper2d.Tpo -c oper2d.c -o oper2d.o mv -f .deps/oper2d.Tpo .deps/oper2d.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT stat.lo -MD -MP -MF .deps/stat.Tpo -c -o stat.lo stat.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT stat.lo -MD -MP -MF .deps/stat.Tpo -c stat.c -o stat.o mv -f .deps/stat.Tpo .deps/stat.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT stat2d.lo -MD -MP -MF .deps/stat2d.Tpo -c -o stat2d.lo stat2d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT stat2d.lo -MD -MP -MF .deps/stat2d.Tpo -c stat2d.c -o stat2d.o mv -f .deps/stat2d.Tpo .deps/stat2d.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslhistogram.la add.lo get.lo init.lo params.lo reset.lo file.lo pdf.lo add2d.lo get2d.lo init2d.lo params2d.lo reset2d.lo file2d.lo pdf2d.lo calloc_range.lo calloc_range2d.lo copy.lo copy2d.lo maxval.lo maxval2d.lo oper.lo oper2d.lo stat.lo stat2d.lo -lm libtool: link: ar cru .libs/libgslhistogram.a add.o get.o init.o params.o reset.o file.o pdf.o add2d.o get2d.o init2d.o params2d.o reset2d.o file2d.o pdf2d.o calloc_range.o calloc_range2d.o copy.o copy2d.o maxval.o maxval2d.o oper.o oper2d.o stat.o stat2d.o libtool: link: ranlib .libs/libgslhistogram.a libtool: link: ( cd ".libs" && rm -f "libgslhistogram.la" && ln -s "../libgslhistogram.la" "libgslhistogram.la" ) make[3]: Leaving directory 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cscal.lo cscal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT cscal.lo -MD -MP -MF .deps/cscal.Tpo -c cscal.c -o cscal.o mv -f .deps/cscal.Tpo .deps/cscal.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT evolve.lo -MD -MP -MF .deps/evolve.Tpo -c -o evolve.lo evolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT evolve.lo -MD -MP -MF .deps/evolve.Tpo -c evolve.c -o evolve.o mv -f .deps/evolve.Tpo .deps/evolve.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT step.lo -MD -MP -MF .deps/step.Tpo -c -o step.lo step.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT step.lo -MD -MP -MF .deps/step.Tpo -c step.c -o step.o mv -f .deps/step.Tpo .deps/step.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rk2.lo -MD -MP -MF .deps/rk2.Tpo -c -o rk2.lo rk2.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT 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--mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rkck.lo -MD -MP -MF .deps/rkck.Tpo -c -o rkck.lo rkck.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT rkck.lo -MD -MP -MF .deps/rkck.Tpo -c rkck.c -o rkck.o mv -f .deps/rkck.Tpo .deps/rkck.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bsimp.lo -MD -MP -MF .deps/bsimp.Tpo -c -o bsimp.lo bsimp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bsimp.lo -MD -MP -MF .deps/bsimp.Tpo -c bsimp.c -o bsimp.o mv -f .deps/bsimp.Tpo .deps/bsimp.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gear1.lo -MD -MP -MF .deps/gear1.Tpo -c -o gear1.lo gear1.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gear1.lo -MD -MP -MF .deps/gear1.Tpo -c gear1.c -o gear1.o mv -f .deps/gear1.Tpo .deps/gear1.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gear2.lo -MD -MP -MF .deps/gear2.Tpo -c -o gear2.lo gear2.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gear2.lo -MD -MP -MF .deps/gear2.Tpo -c gear2.c -o gear2.o mv -f .deps/gear2.Tpo .deps/gear2.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslodeiv.la control.lo cstd.lo cscal.lo evolve.lo step.lo rk2.lo rk2imp.lo rk2simp.lo rk4.lo rk4imp.lo rkf45.lo rk8pd.lo rkck.lo bsimp.lo gear1.lo gear2.lo -lm libtool: link: ar cru .libs/libgslodeiv.a control.o cstd.o cscal.o evolve.o step.o rk2.o rk2imp.o rk2simp.o rk4.o rk4imp.o rkf45.o rk8pd.o rkck.o bsimp.o gear1.o gear2.o libtool: link: ranlib .libs/libgslodeiv.a libtool: link: ( cd ".libs" && rm -f "libgslodeiv.la" && ln -s "../libgslodeiv.la" "libgslodeiv.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ode-initval' Making all in roots make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/roots' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bisection.lo -MD -MP -MF .deps/bisection.Tpo -c -o bisection.lo bisection.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bisection.lo -MD -MP -MF .deps/bisection.Tpo -c bisection.c -o bisection.o mv -f .deps/bisection.Tpo .deps/bisection.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT brent.lo -MD -MP -MF .deps/brent.Tpo -c -o brent.lo brent.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT brent.lo -MD -MP -MF .deps/brent.Tpo -c brent.c -o brent.o mv -f .deps/brent.Tpo .deps/brent.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT falsepos.lo -MD -MP -MF .deps/falsepos.Tpo -c -o falsepos.lo falsepos.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT falsepos.lo -MD -MP -MF .deps/falsepos.Tpo -c falsepos.c -o falsepos.o mv -f .deps/falsepos.Tpo .deps/falsepos.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT newton.lo -MD -MP -MF .deps/newton.Tpo -c -o newton.lo newton.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT newton.lo -MD -MP -MF .deps/newton.Tpo -c newton.c -o newton.o mv -f .deps/newton.Tpo .deps/newton.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT secant.lo -MD -MP -MF .deps/secant.Tpo -c -o secant.lo secant.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT secant.lo -MD -MP -MF .deps/secant.Tpo -c secant.c -o secant.o mv -f .deps/secant.Tpo .deps/secant.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT steffenson.lo -MD -MP -MF .deps/steffenson.Tpo -c -o steffenson.lo steffenson.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT steffenson.lo -MD -MP -MF .deps/steffenson.Tpo -c steffenson.c -o steffenson.o mv -f .deps/steffenson.Tpo .deps/steffenson.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT convergence.lo -MD -MP -MF .deps/convergence.Tpo -c -o convergence.lo convergence.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT convergence.lo -MD -MP -MF .deps/convergence.Tpo -c convergence.c -o convergence.o mv -f .deps/convergence.Tpo .deps/convergence.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fsolver.lo -MD -MP -MF .deps/fsolver.Tpo -c -o fsolver.lo fsolver.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fsolver.lo -MD -MP -MF .deps/fsolver.Tpo -c fsolver.c -o fsolver.o mv -f .deps/fsolver.Tpo .deps/fsolver.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdfsolver.lo -MD -MP -MF .deps/fdfsolver.Tpo -c -o fdfsolver.lo fdfsolver.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdfsolver.lo -MD -MP -MF .deps/fdfsolver.Tpo -c fdfsolver.c -o fdfsolver.o mv -f .deps/fdfsolver.Tpo .deps/fdfsolver.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslroots.la bisection.lo brent.lo falsepos.lo newton.lo secant.lo steffenson.lo convergence.lo fsolver.lo fdfsolver.lo -lm libtool: link: ar cru .libs/libgslroots.a bisection.o brent.o falsepos.o newton.o secant.o steffenson.o convergence.o fsolver.o fdfsolver.o libtool: link: ranlib .libs/libgslroots.a libtool: link: ( cd ".libs" && rm -f "libgslroots.la" && ln -s "../libgslroots.la" "libgslroots.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/roots' Making all in multiroots make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiroots' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdjac.lo -MD -MP -MF .deps/fdjac.Tpo -c -o fdjac.lo fdjac.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdjac.lo -MD -MP -MF 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convergence.lo -MD -MP -MF .deps/convergence.Tpo -c convergence.c -o convergence.o mv -f .deps/convergence.Tpo .deps/convergence.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT newton.lo -MD -MP -MF .deps/newton.Tpo -c -o newton.lo newton.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT newton.lo -MD -MP -MF .deps/newton.Tpo -c newton.c -o newton.o mv -f .deps/newton.Tpo .deps/newton.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gnewton.lo -MD -MP -MF .deps/gnewton.Tpo -c -o gnewton.lo gnewton.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT gnewton.lo -MD -MP -MF .deps/gnewton.Tpo -c gnewton.c -o gnewton.o mv -f .deps/gnewton.Tpo .deps/gnewton.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dnewton.lo -MD -MP -MF .deps/dnewton.Tpo -c -o dnewton.lo dnewton.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dnewton.lo -MD -MP -MF .deps/dnewton.Tpo -c dnewton.c -o dnewton.o mv -f .deps/dnewton.Tpo .deps/dnewton.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT broyden.lo -MD -MP -MF .deps/broyden.Tpo -c -o broyden.lo broyden.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT broyden.lo -MD -MP -MF .deps/broyden.Tpo -c broyden.c -o broyden.o mv -f .deps/broyden.Tpo .deps/broyden.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hybrid.lo -MD -MP -MF .deps/hybrid.Tpo -c -o hybrid.lo hybrid.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hybrid.lo -MD -MP -MF .deps/hybrid.Tpo -c hybrid.c -o hybrid.o mv -f .deps/hybrid.Tpo .deps/hybrid.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hybridj.lo -MD -MP -MF .deps/hybridj.Tpo -c -o hybridj.lo hybridj.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hybridj.lo -MD -MP -MF .deps/hybridj.Tpo -c hybridj.c -o hybridj.o mv -f .deps/hybridj.Tpo .deps/hybridj.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslmultiroots.la fdjac.lo fsolver.lo fdfsolver.lo convergence.lo newton.lo gnewton.lo dnewton.lo broyden.lo hybrid.lo hybridj.lo -lm libtool: link: ar cru .libs/libgslmultiroots.a fdjac.o fsolver.o fdfsolver.o convergence.o newton.o gnewton.o dnewton.o broyden.o hybrid.o hybridj.o libtool: link: ranlib .libs/libgslmultiroots.a libtool: link: ( cd ".libs" && rm -f "libgslmultiroots.la" && ln -s "../libgslmultiroots.la" "libgslmultiroots.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiroots' Making all in min make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/min' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fsolver.lo -MD -MP -MF .deps/fsolver.Tpo -c -o fsolver.lo fsolver.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fsolver.lo -MD -MP -MF .deps/fsolver.Tpo -c fsolver.c -o fsolver.o mv -f .deps/fsolver.Tpo .deps/fsolver.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT golden.lo -MD -MP -MF .deps/golden.Tpo -c -o golden.lo golden.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT golden.lo -MD -MP -MF .deps/golden.Tpo -c golden.c -o golden.o mv -f .deps/golden.Tpo .deps/golden.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT brent.lo -MD -MP -MF .deps/brent.Tpo -c -o brent.lo brent.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT brent.lo -MD -MP -MF .deps/brent.Tpo -c brent.c -o brent.o mv -f .deps/brent.Tpo .deps/brent.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT convergence.lo -MD -MP -MF .deps/convergence.Tpo -c -o convergence.lo convergence.c libtool: compile: gcc 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convergence.lo bracketing.lo quad_golden.lo -lm libtool: link: ar cru .libs/libgslmin.a fsolver.o golden.o brent.o convergence.o bracketing.o quad_golden.o libtool: link: ranlib .libs/libgslmin.a libtool: link: ( cd ".libs" && rm -f "libgslmin.la" && ln -s "../libgslmin.la" "libgslmin.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/min' Making all in multimin make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multimin' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdfminimizer.lo -MD -MP -MF .deps/fdfminimizer.Tpo -c -o fdfminimizer.lo fdfminimizer.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fdfminimizer.lo -MD -MP -MF .deps/fdfminimizer.Tpo -c fdfminimizer.c -o fdfminimizer.o mv -f .deps/fdfminimizer.Tpo .deps/fdfminimizer.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. 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-g -O2 -MT vector_bfgs.lo -MD -MP -MF .deps/vector_bfgs.Tpo -c vector_bfgs.c -o vector_bfgs.o mv -f .deps/vector_bfgs.Tpo .deps/vector_bfgs.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT vector_bfgs2.lo -MD -MP -MF .deps/vector_bfgs2.Tpo -c -o vector_bfgs2.lo vector_bfgs2.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT vector_bfgs2.lo -MD -MP -MF .deps/vector_bfgs2.Tpo -c vector_bfgs2.c -o vector_bfgs2.o mv -f .deps/vector_bfgs2.Tpo .deps/vector_bfgs2.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fminimizer.lo -MD -MP -MF .deps/fminimizer.Tpo -c -o fminimizer.lo fminimizer.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT fminimizer.lo -MD -MP -MF .deps/fminimizer.Tpo -c fminimizer.c -o fminimizer.o mv -f .deps/fminimizer.Tpo .deps/fminimizer.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT simplex.lo -MD -MP -MF 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ranlib .libs/libgslmultimin.a libtool: link: ( cd ".libs" && rm -f "libgslmultimin.la" && ln -s "../libgslmultimin.la" "libgslmultimin.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multimin' Making all in monte make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/monte' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT miser.lo -MD -MP -MF .deps/miser.Tpo -c -o miser.lo miser.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT miser.lo -MD -MP -MF .deps/miser.Tpo -c miser.c -o miser.o mv -f .deps/miser.Tpo .deps/miser.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT plain.lo -MD -MP -MF .deps/plain.Tpo -c -o plain.lo plain.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT plain.lo -MD -MP -MF .deps/plain.Tpo -c plain.c -o plain.o mv -f .deps/plain.Tpo 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diff.o mv -f .deps/diff.Tpo .deps/diff.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgsldiff.la diff.lo -lm libtool: link: ar cru .libs/libgsldiff.a diff.o libtool: link: ranlib .libs/libgsldiff.a libtool: link: ( cd ".libs" && rm -f "libgsldiff.la" && ln -s "../libgsldiff.la" "libgsldiff.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/diff' Making all in deriv make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/deriv' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c -o deriv.lo deriv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT deriv.lo -MD -MP -MF .deps/deriv.Tpo -c deriv.c -o deriv.o mv -f .deps/deriv.Tpo .deps/deriv.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslderiv.la deriv.lo -lm libtool: link: ar cru .libs/libgslderiv.a deriv.o libtool: link: ranlib .libs/libgslderiv.a libtool: link: ( cd ".libs" && rm -f "libgslderiv.la" && ln -s "../libgslderiv.la" "libgslderiv.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/deriv' Making all in cdf make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cdf' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT beta.lo -MD -MP -MF .deps/beta.Tpo -c -o beta.lo beta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT beta.lo -MD -MP -MF .deps/beta.Tpo -c beta.c -o beta.o mv -f .deps/beta.Tpo .deps/beta.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT betainv.lo -MD -MP -MF .deps/betainv.Tpo -c -o betainv.lo betainv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT betainv.lo -MD -MP -MF .deps/betainv.Tpo -c betainv.c -o betainv.o mv -f .deps/betainv.Tpo 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hypergeometric.lo -MD -MP -MF .deps/hypergeometric.Tpo -c -o hypergeometric.lo hypergeometric.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT hypergeometric.lo -MD -MP -MF .deps/hypergeometric.Tpo -c hypergeometric.c -o hypergeometric.o mv -f .deps/hypergeometric.Tpo .deps/hypergeometric.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslcdf.la beta.lo betainv.lo cauchy.lo cauchyinv.lo chisq.lo chisqinv.lo exponential.lo exponentialinv.lo exppow.lo fdist.lo fdistinv.lo flat.lo flatinv.lo gamma.lo gammainv.lo gauss.lo gaussinv.lo gumbel1.lo gumbel1inv.lo gumbel2.lo gumbel2inv.lo laplace.lo laplaceinv.lo logistic.lo logisticinv.lo lognormal.lo lognormalinv.lo pareto.lo paretoinv.lo rayleigh.lo rayleighinv.lo tdist.lo tdistinv.lo weibull.lo weibullinv.lo binomial.lo poisson.lo geometric.lo nbinomial.lo pascal.lo hypergeometric.lo -lm libtool: link: ar cru .libs/libgslcdf.a beta.o betainv.o cauchy.o cauchyinv.o chisq.o chisqinv.o exponential.o exponentialinv.o exppow.o fdist.o fdistinv.o flat.o flatinv.o gamma.o gammainv.o gauss.o gaussinv.o gumbel1.o gumbel1inv.o gumbel2.o gumbel2inv.o laplace.o laplaceinv.o logistic.o logisticinv.o lognormal.o lognormalinv.o pareto.o paretoinv.o rayleigh.o rayleighinv.o tdist.o tdistinv.o weibull.o weibullinv.o binomial.o poisson.o geometric.o nbinomial.o pascal.o hypergeometric.o libtool: link: ranlib .libs/libgslcdf.a libtool: link: ( cd ".libs" && rm -f "libgslcdf.la" && ln -s "../libgslcdf.la" "libgslcdf.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cdf' Making all in wavelet make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/wavelet' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dwt.lo -MD -MP -MF .deps/dwt.Tpo -c -o dwt.lo dwt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT dwt.lo -MD -MP -MF .deps/dwt.Tpo -c dwt.c -o dwt.o mv -f .deps/dwt.Tpo .deps/dwt.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wavelet.lo -MD -MP -MF .deps/wavelet.Tpo -c -o wavelet.lo wavelet.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT wavelet.lo -MD -MP -MF .deps/wavelet.Tpo -c wavelet.c -o wavelet.o mv -f .deps/wavelet.Tpo .deps/wavelet.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bspline.lo -MD -MP -MF .deps/bspline.Tpo -c -o bspline.lo bspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT bspline.lo -MD -MP -MF .deps/bspline.Tpo -c bspline.c -o bspline.o mv -f .deps/bspline.Tpo .deps/bspline.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT daubechies.lo -MD -MP -MF .deps/daubechies.Tpo -c -o daubechies.lo daubechies.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT daubechies.lo -MD -MP -MF .deps/daubechies.Tpo -c daubechies.c -o daubechies.o mv -f .deps/daubechies.Tpo .deps/daubechies.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT haar.lo -MD -MP -MF .deps/haar.Tpo -c -o haar.lo haar.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I.. -g -O2 -MT haar.lo -MD -MP -MF .deps/haar.Tpo -c haar.c -o haar.o mv -f .deps/haar.Tpo .deps/haar.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libgslwavelet.la dwt.lo wavelet.lo bspline.lo daubechies.lo haar.lo -lm libtool: link: ar cru .libs/libgslwavelet.a dwt.o wavelet.o bspline.o daubechies.o haar.o libtool: link: ranlib .libs/libgslwavelet.a libtool: link: ( cd ".libs" && rm -f "libgslwavelet.la" && ln -s "../libgslwavelet.la" "libgslwavelet.la" ) make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/wavelet' Making all in bspline make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/bspline' /bin/sh ../libtool 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make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -g -O2 -MT version.lo -MD -MP -MF .deps/version.Tpo -c -o version.lo version.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -g -O2 -MT version.lo -MD -MP -MF .deps/version.Tpo -c version.c -o version.o mv -f .deps/version.Tpo .deps/version.Plo /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -version-info 15:0:15 -o libgsl.la -rpath /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib version.lo block/libgslblock.la blas/libgslblas.la bspline/libgslbspline.la complex/libgslcomplex.la cheb/libgslcheb.la dht/libgsldht.la diff/libgsldiff.la deriv/libgslderiv.la eigen/libgsleigen.la err/libgslerr.la fft/libgslfft.la fit/libgslfit.la histogram/libgslhistogram.la ieee-utils/libgslieeeutils.la integration/libgslintegration.la interpolation/libgslinterpolation.la linalg/libgsllinalg.la matrix/libgslmatrix.la 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"/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/bspline/.libs/libgslbspline.a") libtool: link: (cd .libs/libgsl.lax/libgslcomplex.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/complex/.libs/libgslcomplex.a") libtool: link: (cd .libs/libgsl.lax/libgslcheb.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cheb/.libs/libgslcheb.a") libtool: link: (cd .libs/libgsl.lax/libgsldht.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/dht/.libs/libgsldht.a") libtool: link: (cd .libs/libgsl.lax/libgsldiff.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/diff/.libs/libgsldiff.a") libtool: link: (cd .libs/libgsl.lax/libgslderiv.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/deriv/.libs/libgslderiv.a") libtool: link: (cd .libs/libgsl.lax/libgsleigen.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/eigen/.libs/libgsleigen.a") libtool: link: (cd .libs/libgsl.lax/libgslerr.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/err/.libs/libgslerr.a") libtool: link: (cd .libs/libgsl.lax/libgslfft.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fft/.libs/libgslfft.a") libtool: link: (cd .libs/libgsl.lax/libgslfit.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fit/.libs/libgslfit.a") libtool: link: (cd .libs/libgsl.lax/libgslhistogram.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/histogram/.libs/libgslhistogram.a") libtool: link: (cd .libs/libgsl.lax/libgslieeeutils.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ieee-utils/.libs/libgslieeeutils.a") libtool: link: (cd .libs/libgsl.lax/libgslintegration.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/integration/.libs/libgslintegration.a") libtool: link: (cd .libs/libgsl.lax/libgslinterpolation.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/interpolation/.libs/libgslinterpolation.a") libtool: link: (cd .libs/libgsl.lax/libgsllinalg.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/linalg/.libs/libgsllinalg.a") libtool: link: (cd .libs/libgsl.lax/libgslmatrix.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/matrix/.libs/libgslmatrix.a") libtool: link: (cd .libs/libgsl.lax/libgslmin.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/min/.libs/libgslmin.a") libtool: link: (cd .libs/libgsl.lax/libgslmonte.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/monte/.libs/libgslmonte.a") libtool: link: (cd .libs/libgsl.lax/libgslmultifit.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multifit/.libs/libgslmultifit.a") libtool: link: (cd .libs/libgsl.lax/libgslmultimin.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multimin/.libs/libgslmultimin.a") libtool: link: (cd .libs/libgsl.lax/libgslmultiroots.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiroots/.libs/libgslmultiroots.a") libtool: link: (cd .libs/libgsl.lax/libgslntuple.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ntuple/.libs/libgslntuple.a") libtool: link: (cd .libs/libgsl.lax/libgslodeiv.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ode-initval/.libs/libgslodeiv.a") libtool: link: (cd .libs/libgsl.lax/libgslpermutation.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/permutation/.libs/libgslpermutation.a") libtool: link: (cd .libs/libgsl.lax/libgslcombination.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/combination/.libs/libgslcombination.a") libtool: link: (cd .libs/libgsl.lax/libgslmultiset.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiset/.libs/libgslmultiset.a") libtool: link: (cd .libs/libgsl.lax/libgslpoly.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/poly/.libs/libgslpoly.a") libtool: link: (cd .libs/libgsl.lax/libgslqrng.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/qrng/.libs/libgslqrng.a") libtool: link: (cd .libs/libgsl.lax/libgslrandist.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/randist/.libs/libgslrandist.a") libtool: link: (cd .libs/libgsl.lax/libgslrng.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/rng/.libs/libgslrng.a") libtool: link: (cd .libs/libgsl.lax/libgslroots.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/roots/.libs/libgslroots.a") libtool: link: (cd .libs/libgsl.lax/libgslsiman.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/siman/.libs/libgslsiman.a") libtool: link: (cd .libs/libgsl.lax/libgslsort.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sort/.libs/libgslsort.a") libtool: link: (cd .libs/libgsl.lax/libgslspecfunc.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/specfunc/.libs/libgslspecfunc.a") libtool: link: (cd .libs/libgsl.lax/libgslstatistics.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/statistics/.libs/libgslstatistics.a") libtool: link: (cd .libs/libgsl.lax/libgslsum.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sum/.libs/libgslsum.a") libtool: link: (cd .libs/libgsl.lax/libgslsys.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sys/.libs/libgslsys.a") libtool: link: (cd .libs/libgsl.lax/libgsltest.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/test/.libs/libgsltest.a") libtool: link: (cd .libs/libgsl.lax/libutils.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/utils/.libs/libutils.a") libtool: link: (cd .libs/libgsl.lax/libgslvector.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/vector/.libs/libgslvector.a") libtool: link: (cd .libs/libgsl.lax/libgslcdf.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cdf/.libs/libgslcdf.a") libtool: link: (cd .libs/libgsl.lax/libgslwavelet.a && ar x "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/wavelet/.libs/libgslwavelet.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libgsl.lax/libgslcheb.a/init.o .libs/libgsl.lax/lt1-init.o || cp .libs/libgsl.lax/libgslcheb.a/init.o .libs/libgsl.lax/lt1-init.o libtool: link: ln .libs/libgsl.lax/libgslderiv.a/deriv.o .libs/libgsl.lax/lt2-deriv.o || cp .libs/libgsl.lax/libgslderiv.a/deriv.o .libs/libgsl.lax/lt2-deriv.o libtool: link: ln .libs/libgsl.lax/libgslhistogram.a/file.o .libs/libgsl.lax/lt3-file.o || cp .libs/libgsl.lax/libgslhistogram.a/file.o .libs/libgsl.lax/lt3-file.o libtool: link: ln .libs/libgsl.lax/libgslhistogram.a/init.o .libs/libgsl.lax/lt4-init.o || cp .libs/libgsl.lax/libgslhistogram.a/init.o .libs/libgsl.lax/lt4-init.o libtool: link: ln .libs/libgsl.lax/libgslinterpolation.a/inline.o .libs/libgsl.lax/lt5-inline.o || cp .libs/libgsl.lax/libgslinterpolation.a/inline.o .libs/libgsl.lax/lt5-inline.o libtool: link: ln .libs/libgsl.lax/libgslinterpolation.a/linear.o .libs/libgsl.lax/lt6-linear.o || cp .libs/libgsl.lax/libgslinterpolation.a/linear.o .libs/libgsl.lax/lt6-linear.o libtool: link: ln .libs/libgsl.lax/libgslmatrix.a/oper.o .libs/libgsl.lax/lt7-oper.o || cp .libs/libgsl.lax/libgslmatrix.a/oper.o .libs/libgsl.lax/lt7-oper.o libtool: link: ln .libs/libgsl.lax/libgslmatrix.a/copy.o .libs/libgsl.lax/lt8-copy.o || cp .libs/libgsl.lax/libgslmatrix.a/copy.o .libs/libgsl.lax/lt8-copy.o libtool: link: ln .libs/libgsl.lax/libgslmatrix.a/file.o .libs/libgsl.lax/lt9-file.o || cp .libs/libgsl.lax/libgslmatrix.a/file.o .libs/libgsl.lax/lt9-file.o libtool: link: ln .libs/libgsl.lax/libgslmatrix.a/init.o .libs/libgsl.lax/lt10-init.o || cp .libs/libgsl.lax/libgslmatrix.a/init.o .libs/libgsl.lax/lt10-init.o libtool: link: ln .libs/libgsl.lax/libgslmultifit.a/convergence.o .libs/libgsl.lax/lt11-convergence.o || cp .libs/libgsl.lax/libgslmultifit.a/convergence.o .libs/libgsl.lax/lt11-convergence.o libtool: link: ln .libs/libgsl.lax/libgslmultifit.a/fsolver.o .libs/libgsl.lax/lt12-fsolver.o || cp .libs/libgsl.lax/libgslmultifit.a/fsolver.o .libs/libgsl.lax/lt12-fsolver.o libtool: link: ln .libs/libgsl.lax/libgslmultimin.a/diff.o .libs/libgsl.lax/lt13-diff.o || cp .libs/libgsl.lax/libgslmultimin.a/diff.o .libs/libgsl.lax/lt13-diff.o libtool: link: ln .libs/libgsl.lax/libgslmultimin.a/convergence.o .libs/libgsl.lax/lt14-convergence.o || cp .libs/libgsl.lax/libgslmultimin.a/convergence.o .libs/libgsl.lax/lt14-convergence.o libtool: link: ln .libs/libgsl.lax/libgslmultiroots.a/convergence.o .libs/libgsl.lax/lt15-convergence.o || cp .libs/libgsl.lax/libgslmultiroots.a/convergence.o .libs/libgsl.lax/lt15-convergence.o libtool: link: ln .libs/libgsl.lax/libgslmultiroots.a/fdfsolver.o .libs/libgsl.lax/lt16-fdfsolver.o || cp .libs/libgsl.lax/libgslmultiroots.a/fdfsolver.o .libs/libgsl.lax/lt16-fdfsolver.o libtool: link: ln .libs/libgsl.lax/libgslmultiroots.a/fsolver.o .libs/libgsl.lax/lt17-fsolver.o || cp .libs/libgsl.lax/libgslmultiroots.a/fsolver.o .libs/libgsl.lax/lt17-fsolver.o libtool: link: ln .libs/libgsl.lax/libgslpermutation.a/inline.o .libs/libgsl.lax/lt18-inline.o || cp .libs/libgsl.lax/libgslpermutation.a/inline.o .libs/libgsl.lax/lt18-inline.o libtool: link: ln .libs/libgsl.lax/libgslpermutation.a/file.o .libs/libgsl.lax/lt19-file.o || cp .libs/libgsl.lax/libgslpermutation.a/file.o .libs/libgsl.lax/lt19-file.o libtool: link: ln .libs/libgsl.lax/libgslpermutation.a/init.o .libs/libgsl.lax/lt20-init.o || cp .libs/libgsl.lax/libgslpermutation.a/init.o .libs/libgsl.lax/lt20-init.o libtool: link: ln .libs/libgsl.lax/libgslcombination.a/inline.o .libs/libgsl.lax/lt21-inline.o || cp .libs/libgsl.lax/libgslcombination.a/inline.o .libs/libgsl.lax/lt21-inline.o libtool: link: ln .libs/libgsl.lax/libgslcombination.a/file.o .libs/libgsl.lax/lt22-file.o || cp .libs/libgsl.lax/libgslcombination.a/file.o .libs/libgsl.lax/lt22-file.o libtool: link: ln .libs/libgsl.lax/libgslcombination.a/init.o .libs/libgsl.lax/lt23-init.o || cp .libs/libgsl.lax/libgslcombination.a/init.o .libs/libgsl.lax/lt23-init.o libtool: link: ln .libs/libgsl.lax/libgslmultiset.a/inline.o .libs/libgsl.lax/lt24-inline.o || cp .libs/libgsl.lax/libgslmultiset.a/inline.o .libs/libgsl.lax/lt24-inline.o libtool: link: ln .libs/libgsl.lax/libgslmultiset.a/file.o .libs/libgsl.lax/lt25-file.o || cp .libs/libgsl.lax/libgslmultiset.a/file.o .libs/libgsl.lax/lt25-file.o libtool: link: ln .libs/libgsl.lax/libgslmultiset.a/init.o .libs/libgsl.lax/lt26-init.o || cp .libs/libgsl.lax/libgslmultiset.a/init.o .libs/libgsl.lax/lt26-init.o libtool: link: ln .libs/libgsl.lax/libgslpoly.a/deriv.o .libs/libgsl.lax/lt27-deriv.o || cp .libs/libgsl.lax/libgslpoly.a/deriv.o .libs/libgsl.lax/lt27-deriv.o libtool: link: ln .libs/libgsl.lax/libgslpoly.a/eval.o .libs/libgsl.lax/lt28-eval.o || cp .libs/libgsl.lax/libgslpoly.a/eval.o .libs/libgsl.lax/lt28-eval.o libtool: link: ln .libs/libgsl.lax/libgslqrng.a/inline.o .libs/libgsl.lax/lt29-inline.o || cp .libs/libgsl.lax/libgslqrng.a/inline.o .libs/libgsl.lax/lt29-inline.o libtool: link: ln .libs/libgsl.lax/libgslrandist.a/exponential.o .libs/libgsl.lax/lt30-exponential.o || cp .libs/libgsl.lax/libgslrandist.a/exponential.o .libs/libgsl.lax/lt30-exponential.o libtool: link: ln .libs/libgsl.lax/libgslrng.a/inline.o .libs/libgsl.lax/lt31-inline.o || cp .libs/libgsl.lax/libgslrng.a/inline.o .libs/libgsl.lax/lt31-inline.o libtool: link: ln .libs/libgsl.lax/libgslrng.a/file.o .libs/libgsl.lax/lt32-file.o || cp .libs/libgsl.lax/libgslrng.a/file.o .libs/libgsl.lax/lt32-file.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/fdfsolver.o .libs/libgsl.lax/lt33-fdfsolver.o || cp .libs/libgsl.lax/libgslroots.a/fdfsolver.o .libs/libgsl.lax/lt33-fdfsolver.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/fsolver.o .libs/libgsl.lax/lt34-fsolver.o || cp .libs/libgsl.lax/libgslroots.a/fsolver.o .libs/libgsl.lax/lt34-fsolver.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/convergence.o .libs/libgsl.lax/lt35-convergence.o || cp .libs/libgsl.lax/libgslroots.a/convergence.o .libs/libgsl.lax/lt35-convergence.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/newton.o .libs/libgsl.lax/lt36-newton.o || cp .libs/libgsl.lax/libgslroots.a/newton.o .libs/libgsl.lax/lt36-newton.o libtool: link: ln .libs/libgsl.lax/libgslroots.a/brent.o .libs/libgsl.lax/lt37-brent.o || cp .libs/libgsl.lax/libgslroots.a/brent.o .libs/libgsl.lax/lt37-brent.o libtool: link: ln .libs/libgsl.lax/libgslsort.a/sort.o .libs/libgsl.lax/lt38-sort.o || cp .libs/libgsl.lax/libgslsort.a/sort.o .libs/libgsl.lax/lt38-sort.o libtool: link: ln .libs/libgsl.lax/libgslspecfunc.a/hyperg.o .libs/libgsl.lax/lt39-hyperg.o || cp .libs/libgsl.lax/libgslspecfunc.a/hyperg.o .libs/libgsl.lax/lt39-hyperg.o libtool: link: ln .libs/libgsl.lax/libgslspecfunc.a/gamma.o .libs/libgsl.lax/lt40-gamma.o || cp .libs/libgsl.lax/libgslspecfunc.a/gamma.o .libs/libgsl.lax/lt40-gamma.o libtool: link: ln .libs/libgsl.lax/libgslspecfunc.a/beta.o .libs/libgsl.lax/lt41-beta.o || cp .libs/libgsl.lax/libgslspecfunc.a/beta.o .libs/libgsl.lax/lt41-beta.o libtool: link: ln .libs/libgsl.lax/libgslstatistics.a/minmax.o .libs/libgsl.lax/lt42-minmax.o || cp .libs/libgsl.lax/libgslstatistics.a/minmax.o .libs/libgsl.lax/lt42-minmax.o libtool: link: ln .libs/libgsl.lax/libgslsys.a/pow_int.o .libs/libgsl.lax/lt43-pow_int.o || cp .libs/libgsl.lax/libgslsys.a/pow_int.o .libs/libgsl.lax/lt43-pow_int.o libtool: link: ln .libs/libgsl.lax/libgslsys.a/minmax.o .libs/libgsl.lax/lt44-minmax.o || cp .libs/libgsl.lax/libgslsys.a/minmax.o .libs/libgsl.lax/lt44-minmax.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/view.o .libs/libgsl.lax/lt45-view.o || cp .libs/libgsl.lax/libgslvector.a/view.o .libs/libgsl.lax/lt45-view.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/oper.o .libs/libgsl.lax/lt46-oper.o || cp .libs/libgsl.lax/libgslvector.a/oper.o .libs/libgsl.lax/lt46-oper.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/minmax.o .libs/libgsl.lax/lt47-minmax.o || cp .libs/libgsl.lax/libgslvector.a/minmax.o .libs/libgsl.lax/lt47-minmax.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/prop.o .libs/libgsl.lax/lt48-prop.o || cp .libs/libgsl.lax/libgslvector.a/prop.o .libs/libgsl.lax/lt48-prop.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/swap.o .libs/libgsl.lax/lt49-swap.o || cp .libs/libgsl.lax/libgslvector.a/swap.o .libs/libgsl.lax/lt49-swap.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/copy.o .libs/libgsl.lax/lt50-copy.o || cp .libs/libgsl.lax/libgslvector.a/copy.o .libs/libgsl.lax/lt50-copy.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/file.o .libs/libgsl.lax/lt51-file.o || cp .libs/libgsl.lax/libgslvector.a/file.o .libs/libgsl.lax/lt51-file.o libtool: link: ln .libs/libgsl.lax/libgslvector.a/init.o .libs/libgsl.lax/lt52-init.o || cp .libs/libgsl.lax/libgslvector.a/init.o .libs/libgsl.lax/lt52-init.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/pascal.o .libs/libgsl.lax/lt53-pascal.o || cp .libs/libgsl.lax/libgslcdf.a/pascal.o .libs/libgsl.lax/lt53-pascal.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/nbinomial.o .libs/libgsl.lax/lt54-nbinomial.o || cp .libs/libgsl.lax/libgslcdf.a/nbinomial.o .libs/libgsl.lax/lt54-nbinomial.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/geometric.o .libs/libgsl.lax/lt55-geometric.o || cp .libs/libgsl.lax/libgslcdf.a/geometric.o .libs/libgsl.lax/lt55-geometric.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/poisson.o .libs/libgsl.lax/lt56-poisson.o || cp .libs/libgsl.lax/libgslcdf.a/poisson.o .libs/libgsl.lax/lt56-poisson.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/binomial.o .libs/libgsl.lax/lt57-binomial.o || cp .libs/libgsl.lax/libgslcdf.a/binomial.o .libs/libgsl.lax/lt57-binomial.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/weibull.o .libs/libgsl.lax/lt58-weibull.o || cp .libs/libgsl.lax/libgslcdf.a/weibull.o .libs/libgsl.lax/lt58-weibull.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/tdist.o .libs/libgsl.lax/lt59-tdist.o || cp .libs/libgsl.lax/libgslcdf.a/tdist.o .libs/libgsl.lax/lt59-tdist.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/rayleigh.o .libs/libgsl.lax/lt60-rayleigh.o || cp .libs/libgsl.lax/libgslcdf.a/rayleigh.o .libs/libgsl.lax/lt60-rayleigh.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/pareto.o .libs/libgsl.lax/lt61-pareto.o || cp .libs/libgsl.lax/libgslcdf.a/pareto.o .libs/libgsl.lax/lt61-pareto.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/lognormal.o .libs/libgsl.lax/lt62-lognormal.o || cp .libs/libgsl.lax/libgslcdf.a/lognormal.o .libs/libgsl.lax/lt62-lognormal.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/logistic.o .libs/libgsl.lax/lt63-logistic.o || cp .libs/libgsl.lax/libgslcdf.a/logistic.o .libs/libgsl.lax/lt63-logistic.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/laplace.o .libs/libgsl.lax/lt64-laplace.o || cp .libs/libgsl.lax/libgslcdf.a/laplace.o .libs/libgsl.lax/lt64-laplace.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/gauss.o .libs/libgsl.lax/lt65-gauss.o || cp .libs/libgsl.lax/libgslcdf.a/gauss.o .libs/libgsl.lax/lt65-gauss.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/gamma.o .libs/libgsl.lax/lt66-gamma.o || cp .libs/libgsl.lax/libgslcdf.a/gamma.o .libs/libgsl.lax/lt66-gamma.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/flat.o .libs/libgsl.lax/lt67-flat.o || cp .libs/libgsl.lax/libgslcdf.a/flat.o .libs/libgsl.lax/lt67-flat.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/fdist.o .libs/libgsl.lax/lt68-fdist.o || cp .libs/libgsl.lax/libgslcdf.a/fdist.o .libs/libgsl.lax/lt68-fdist.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/exppow.o .libs/libgsl.lax/lt69-exppow.o || cp .libs/libgsl.lax/libgslcdf.a/exppow.o .libs/libgsl.lax/lt69-exppow.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/exponential.o .libs/libgsl.lax/lt70-exponential.o || cp .libs/libgsl.lax/libgslcdf.a/exponential.o .libs/libgsl.lax/lt70-exponential.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/chisq.o .libs/libgsl.lax/lt71-chisq.o || cp .libs/libgsl.lax/libgslcdf.a/chisq.o .libs/libgsl.lax/lt71-chisq.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/cauchy.o .libs/libgsl.lax/lt72-cauchy.o || cp .libs/libgsl.lax/libgslcdf.a/cauchy.o .libs/libgsl.lax/lt72-cauchy.o libtool: link: ln .libs/libgsl.lax/libgslcdf.a/beta.o .libs/libgsl.lax/lt73-beta.o || cp .libs/libgsl.lax/libgslcdf.a/beta.o .libs/libgsl.lax/lt73-beta.o libtool: link: ln .libs/libgsl.lax/libgslwavelet.a/bspline.o .libs/libgsl.lax/lt74-bspline.o || cp .libs/libgsl.lax/libgslwavelet.a/bspline.o .libs/libgsl.lax/lt74-bspline.o libtool: link: ar cru .libs/libgsl.a version.o .libs/libgsl.lax/libgslblock.a/block.o .libs/libgsl.lax/libgslblock.a/file.o .libs/libgsl.lax/libgslblock.a/init.o 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.libs/libgsl.lax/libgsllinalg.a/symmtd.o .libs/libgsl.lax/libgsllinalg.a/choleskyc.o .libs/libgsl.lax/libgsllinalg.a/cholesky.o .libs/libgsl.lax/libgsllinalg.a/hesstri.o .libs/libgsl.lax/libgsllinalg.a/hessenberg.o .libs/libgsl.lax/libgsllinalg.a/householdercomplex.o .libs/libgsl.lax/libgsllinalg.a/householder.o .libs/libgsl.lax/libgsllinalg.a/svd.o .libs/libgsl.lax/libgsllinalg.a/ptlq.o .libs/libgsl.lax/libgsllinalg.a/lq.o .libs/libgsl.lax/libgsllinalg.a/qrpt.o .libs/libgsl.lax/libgsllinalg.a/qr.o .libs/libgsl.lax/libgsllinalg.a/hh.o .libs/libgsl.lax/libgsllinalg.a/luc.o .libs/libgsl.lax/libgsllinalg.a/lu.o .libs/libgsl.lax/libgsllinalg.a/tridiag.o .libs/libgsl.lax/libgsllinalg.a/exponential.o .libs/libgsl.lax/libgsllinalg.a/multiply.o .libs/libgsl.lax/libgslmatrix.a/submatrix.o .libs/libgsl.lax/libgslmatrix.a/view.o .libs/libgsl.lax/libgslmatrix.a/getset.o .libs/libgsl.lax/lt7-oper.o .libs/libgsl.lax/libgslmatrix.a/prop.o .libs/libgsl.lax/libgslmatrix.a/minmax.o .libs/libgsl.lax/lt8-copy.o .libs/libgsl.lax/libgslmatrix.a/swap.o .libs/libgsl.lax/libgslmatrix.a/rowcol.o .libs/libgsl.lax/lt9-file.o .libs/libgsl.lax/libgslmatrix.a/matrix.o .libs/libgsl.lax/lt10-init.o .libs/libgsl.lax/libgslmin.a/quad_golden.o .libs/libgsl.lax/libgslmin.a/bracketing.o .libs/libgsl.lax/libgslmin.a/convergence.o .libs/libgsl.lax/libgslmin.a/brent.o .libs/libgsl.lax/libgslmin.a/golden.o .libs/libgsl.lax/libgslmin.a/fsolver.o .libs/libgsl.lax/libgslmonte.a/vegas.o .libs/libgsl.lax/libgslmonte.a/plain.o .libs/libgsl.lax/libgslmonte.a/miser.o .libs/libgsl.lax/libgslmultifit.a/covar.o .libs/libgsl.lax/libgslmultifit.a/gradient.o .libs/libgsl.lax/lt11-convergence.o .libs/libgsl.lax/libgslmultifit.a/fdfsolver.o .libs/libgsl.lax/lt12-fsolver.o .libs/libgsl.lax/libgslmultifit.a/lmder.o .libs/libgsl.lax/libgslmultifit.a/work.o .libs/libgsl.lax/libgslmultifit.a/multilinear.o .libs/libgsl.lax/libgslmultimin.a/simplex2.o .libs/libgsl.lax/libgslmultimin.a/simplex.o 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.libs/libgsl.lax/libgslrng.a/rand.o .libs/libgsl.lax/libgslrng.a/rand48.o .libs/libgsl.lax/libgslrng.a/ran3.o .libs/libgsl.lax/libgslrng.a/ran2.o .libs/libgsl.lax/libgslrng.a/ran1.o .libs/libgsl.lax/libgslrng.a/ran0.o .libs/libgsl.lax/libgslrng.a/r250.o .libs/libgsl.lax/libgslrng.a/mt.o .libs/libgsl.lax/libgslrng.a/mrg.o .libs/libgsl.lax/libgslrng.a/minstd.o .libs/libgsl.lax/libgslrng.a/lecuyer21.o .libs/libgsl.lax/libgslrng.a/knuthran2002.o .libs/libgsl.lax/libgslrng.a/knuthran.o .libs/libgsl.lax/libgslrng.a/knuthran2.o .libs/libgsl.lax/libgslrng.a/gfsr4.o .libs/libgsl.lax/libgslrng.a/fishman2x.o .libs/libgsl.lax/libgslrng.a/fishman20.o .libs/libgsl.lax/libgslrng.a/fishman18.o .libs/libgsl.lax/lt32-file.o .libs/libgsl.lax/libgslrng.a/default.o .libs/libgsl.lax/libgslrng.a/coveyou.o .libs/libgsl.lax/libgslrng.a/cmrg.o .libs/libgsl.lax/libgslrng.a/borosh13.o .libs/libgsl.lax/lt33-fdfsolver.o .libs/libgsl.lax/lt34-fsolver.o .libs/libgsl.lax/lt35-convergence.o .libs/libgsl.lax/libgslroots.a/steffenson.o .libs/libgsl.lax/libgslroots.a/secant.o .libs/libgsl.lax/lt36-newton.o .libs/libgsl.lax/libgslroots.a/falsepos.o .libs/libgsl.lax/lt37-brent.o .libs/libgsl.lax/libgslroots.a/bisection.o .libs/libgsl.lax/libgslsiman.a/siman.o .libs/libgsl.lax/libgslsort.a/subsetind.o .libs/libgsl.lax/libgslsort.a/subset.o .libs/libgsl.lax/libgslsort.a/sortvecind.o .libs/libgsl.lax/libgslsort.a/sortvec.o .libs/libgsl.lax/libgslsort.a/sortind.o .libs/libgsl.lax/lt38-sort.o .libs/libgsl.lax/libgslspecfunc.a/zeta.o .libs/libgsl.lax/libgslspecfunc.a/trig.o .libs/libgsl.lax/libgslspecfunc.a/transport.o .libs/libgsl.lax/libgslspecfunc.a/synchrotron.o .libs/libgsl.lax/libgslspecfunc.a/sinint.o .libs/libgsl.lax/libgslspecfunc.a/shint.o .libs/libgsl.lax/libgslspecfunc.a/result.o .libs/libgsl.lax/libgslspecfunc.a/psi.o .libs/libgsl.lax/libgslspecfunc.a/pow_int.o .libs/libgsl.lax/libgslspecfunc.a/poch.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_workspace.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_radfunc.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_coeff.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_charv.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_angfunc.o .libs/libgsl.lax/libgslspecfunc.a/log.o .libs/libgsl.lax/libgslspecfunc.a/legendre_poly.o .libs/libgsl.lax/libgslspecfunc.a/legendre_con.o .libs/libgsl.lax/libgslspecfunc.a/legendre_Qn.o .libs/libgsl.lax/libgslspecfunc.a/legendre_H3d.o .libs/libgsl.lax/libgslspecfunc.a/lambert.o .libs/libgsl.lax/libgslspecfunc.a/laguerre.o .libs/libgsl.lax/lt39-hyperg.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_U.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_2F1.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_1F1.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_2F0.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_0F1.o .libs/libgsl.lax/libgslspecfunc.a/gamma_inc.o .libs/libgsl.lax/lt40-gamma.o .libs/libgsl.lax/libgslspecfunc.a/gegenbauer.o .libs/libgsl.lax/libgslspecfunc.a/fermi_dirac.o .libs/libgsl.lax/libgslspecfunc.a/expint3.o .libs/libgsl.lax/libgslspecfunc.a/expint.o .libs/libgsl.lax/libgslspecfunc.a/exp.o .libs/libgsl.lax/libgslspecfunc.a/erfc.o .libs/libgsl.lax/libgslspecfunc.a/elljac.o .libs/libgsl.lax/libgslspecfunc.a/ellint.o .libs/libgsl.lax/libgslspecfunc.a/elementary.o .libs/libgsl.lax/libgslspecfunc.a/dilog.o .libs/libgsl.lax/libgslspecfunc.a/debye.o .libs/libgsl.lax/libgslspecfunc.a/dawson.o .libs/libgsl.lax/libgslspecfunc.a/coulomb_bound.o .libs/libgsl.lax/libgslspecfunc.a/coupling.o .libs/libgsl.lax/libgslspecfunc.a/coulomb.o .libs/libgsl.lax/libgslspecfunc.a/clausen.o .libs/libgsl.lax/libgslspecfunc.a/beta_inc.o .libs/libgsl.lax/lt41-beta.o .libs/libgsl.lax/libgslspecfunc.a/bessel_sequence.o .libs/libgsl.lax/libgslspecfunc.a/bessel_zero.o .libs/libgsl.lax/libgslspecfunc.a/bessel_y.o .libs/libgsl.lax/libgslspecfunc.a/bessel_temme.o .libs/libgsl.lax/libgslspecfunc.a/bessel_olver.o .libs/libgsl.lax/libgslspecfunc.a/bessel_k.o .libs/libgsl.lax/libgslspecfunc.a/bessel_j.o .libs/libgsl.lax/libgslspecfunc.a/bessel_i.o .libs/libgsl.lax/libgslspecfunc.a/bessel_amp_phase.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Ynu.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Yn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Y1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Y0.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Knu.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Kn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_K1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_K0.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Jnu.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Jn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_J1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_J0.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Inu.o .libs/libgsl.lax/libgslspecfunc.a/bessel_In.o .libs/libgsl.lax/libgslspecfunc.a/bessel_I1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_I0.o .libs/libgsl.lax/libgslspecfunc.a/bessel.o .libs/libgsl.lax/libgslspecfunc.a/atanint.o .libs/libgsl.lax/libgslspecfunc.a/airy_zero.o .libs/libgsl.lax/libgslspecfunc.a/airy_der.o .libs/libgsl.lax/libgslspecfunc.a/airy.o .libs/libgsl.lax/libgslstatistics.a/wkurtosis.o .libs/libgsl.lax/libgslstatistics.a/wskew.o .libs/libgsl.lax/libgslstatistics.a/wabsdev.o .libs/libgsl.lax/libgslstatistics.a/wvariance.o .libs/libgsl.lax/libgslstatistics.a/wmean.o .libs/libgsl.lax/libgslstatistics.a/quantiles.o .libs/libgsl.lax/libgslstatistics.a/covariance.o .libs/libgsl.lax/libgslstatistics.a/median.o .libs/libgsl.lax/libgslstatistics.a/ttest.o .libs/libgsl.lax/lt42-minmax.o .libs/libgsl.lax/libgslstatistics.a/p_variance.o .libs/libgsl.lax/libgslstatistics.a/lag1.o .libs/libgsl.lax/libgslstatistics.a/kurtosis.o .libs/libgsl.lax/libgslstatistics.a/skew.o .libs/libgsl.lax/libgslstatistics.a/absdev.o .libs/libgsl.lax/libgslstatistics.a/variance.o .libs/libgsl.lax/libgslstatistics.a/mean.o .libs/libgsl.lax/libgslsum.a/work_utrunc.o .libs/libgsl.lax/libgslsum.a/work_u.o .libs/libgsl.lax/libgslsum.a/levin_utrunc.o .libs/libgsl.lax/libgslsum.a/levin_u.o .libs/libgsl.lax/libgslsys.a/ldfrexp.o .libs/libgsl.lax/libgslsys.a/fcmp.o .libs/libgsl.lax/libgslsys.a/fdiv.o .libs/libgsl.lax/libgslsys.a/infnan.o .libs/libgsl.lax/lt43-pow_int.o .libs/libgsl.lax/libgslsys.a/invhyp.o .libs/libgsl.lax/libgslsys.a/coerce.o .libs/libgsl.lax/libgslsys.a/expm1.o .libs/libgsl.lax/libgslsys.a/log1p.o .libs/libgsl.lax/libgslsys.a/hypot.o .libs/libgsl.lax/libgslsys.a/prec.o .libs/libgsl.lax/lt44-minmax.o .libs/libgsl.lax/libgsltest.a/results.o .libs/libgsl.lax/libutils.a/placeholder.o .libs/libgsl.lax/lt45-view.o .libs/libgsl.lax/libgslvector.a/subvector.o .libs/libgsl.lax/libgslvector.a/reim.o .libs/libgsl.lax/lt46-oper.o .libs/libgsl.lax/lt47-minmax.o .libs/libgsl.lax/lt48-prop.o .libs/libgsl.lax/lt49-swap.o .libs/libgsl.lax/lt50-copy.o .libs/libgsl.lax/libgslvector.a/vector.o .libs/libgsl.lax/lt51-file.o .libs/libgsl.lax/lt52-init.o .libs/libgsl.lax/libgslcdf.a/hypergeometric.o .libs/libgsl.lax/lt53-pascal.o .libs/libgsl.lax/lt54-nbinomial.o .libs/libgsl.lax/lt55-geometric.o .libs/libgsl.lax/lt56-poisson.o .libs/libgsl.lax/lt57-binomial.o .libs/libgsl.lax/libgslcdf.a/weibullinv.o .libs/libgsl.lax/lt58-weibull.o .libs/libgsl.lax/libgslcdf.a/tdistinv.o .libs/libgsl.lax/lt59-tdist.o .libs/libgsl.lax/libgslcdf.a/rayleighinv.o .libs/libgsl.lax/lt60-rayleigh.o .libs/libgsl.lax/libgslcdf.a/paretoinv.o .libs/libgsl.lax/lt61-pareto.o .libs/libgsl.lax/libgslcdf.a/lognormalinv.o .libs/libgsl.lax/lt62-lognormal.o .libs/libgsl.lax/libgslcdf.a/logisticinv.o .libs/libgsl.lax/lt63-logistic.o .libs/libgsl.lax/libgslcdf.a/laplaceinv.o .libs/libgsl.lax/lt64-laplace.o .libs/libgsl.lax/libgslcdf.a/gumbel2inv.o .libs/libgsl.lax/libgslcdf.a/gumbel2.o .libs/libgsl.lax/libgslcdf.a/gumbel1inv.o .libs/libgsl.lax/libgslcdf.a/gumbel1.o .libs/libgsl.lax/libgslcdf.a/gaussinv.o .libs/libgsl.lax/lt65-gauss.o .libs/libgsl.lax/libgslcdf.a/gammainv.o .libs/libgsl.lax/lt66-gamma.o .libs/libgsl.lax/libgslcdf.a/flatinv.o .libs/libgsl.lax/lt67-flat.o .libs/libgsl.lax/libgslcdf.a/fdistinv.o .libs/libgsl.lax/lt68-fdist.o .libs/libgsl.lax/lt69-exppow.o .libs/libgsl.lax/libgslcdf.a/exponentialinv.o .libs/libgsl.lax/lt70-exponential.o .libs/libgsl.lax/libgslcdf.a/chisqinv.o .libs/libgsl.lax/lt71-chisq.o .libs/libgsl.lax/libgslcdf.a/cauchyinv.o .libs/libgsl.lax/lt72-cauchy.o .libs/libgsl.lax/libgslcdf.a/betainv.o .libs/libgsl.lax/lt73-beta.o .libs/libgsl.lax/libgslwavelet.a/haar.o .libs/libgsl.lax/libgslwavelet.a/daubechies.o .libs/libgsl.lax/lt74-bspline.o .libs/libgsl.lax/libgslwavelet.a/wavelet.o .libs/libgsl.lax/libgslwavelet.a/dwt.o libtool: link: ranlib .libs/libgsl.a libtool: link: rm -fr .libs/libgsl.lax .libs/libgsl.lax libtool: link: ( cd ".libs" && rm -f "libgsl.la" && ln -s "../libgsl.la" "libgsl.la" ) gcc -DHAVE_CONFIG_H -I. -g -O2 -MT gsl-randist.o -MD -MP -MF .deps/gsl-randist.Tpo -c -o gsl-randist.o gsl-randist.c mv -f .deps/gsl-randist.Tpo .deps/gsl-randist.Po /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -o gsl-randist gsl-randist.o libgsl.la cblas/libgslcblas.la -lm libtool: link: gcc -g -O2 -o gsl-randist gsl-randist.o ./.libs/libgsl.a cblas/.libs/libgslcblas.a -lm gcc -DHAVE_CONFIG_H -I. -g -O2 -MT gsl-histogram.o -MD -MP -MF .deps/gsl-histogram.Tpo -c -o gsl-histogram.o gsl-histogram.c mv -f .deps/gsl-histogram.Tpo .deps/gsl-histogram.Po /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -o gsl-histogram gsl-histogram.o libgsl.la cblas/libgslcblas.la -lm libtool: link: gcc -g -O2 -o gsl-histogram gsl-histogram.o ./.libs/libgsl.a cblas/.libs/libgslcblas.a -lm creating gsl-config creating gsl.pc make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' Making install in gsl make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/gsl' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/gsl' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/gsl' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/gsl' Making install in utils make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/utils' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/utils' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/utils' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/utils' Making install in sys make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sys' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sys' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_sys.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sys' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sys' Making install in test make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/test' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/test' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_test.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/test' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/test' Making install in err make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/err' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/err' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_errno.h gsl_message.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/err' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/err' Making install in const make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/const' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/const' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_const.h gsl_const_cgs.h gsl_const_mks.h gsl_const_cgsm.h gsl_const_mksa.h gsl_const_num.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/const' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/const' Making install in complex make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/complex' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/complex' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_complex.h gsl_complex_math.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/complex' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/complex' Making install in cheb make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cheb' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cheb' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_chebyshev.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cheb' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cheb' Making install in block make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/block' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/block' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_block.h gsl_block_char.h gsl_block_complex_double.h gsl_block_complex_float.h gsl_block_complex_long_double.h gsl_block_double.h gsl_block_float.h gsl_block_int.h gsl_block_long.h gsl_block_long_double.h gsl_block_short.h gsl_block_uchar.h gsl_block_uint.h gsl_block_ulong.h gsl_block_ushort.h gsl_check_range.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/block' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/block' Making install in vector make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/vector' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/vector' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_vector.h gsl_vector_char.h gsl_vector_complex.h gsl_vector_complex_double.h gsl_vector_complex_float.h gsl_vector_complex_long_double.h gsl_vector_double.h gsl_vector_float.h gsl_vector_int.h gsl_vector_long.h gsl_vector_long_double.h gsl_vector_short.h gsl_vector_uchar.h gsl_vector_uint.h gsl_vector_ulong.h gsl_vector_ushort.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/vector' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/vector' Making install in matrix make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/matrix' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/matrix' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_matrix.h gsl_matrix_char.h gsl_matrix_complex_double.h gsl_matrix_complex_float.h gsl_matrix_complex_long_double.h gsl_matrix_double.h gsl_matrix_float.h gsl_matrix_int.h gsl_matrix_long.h gsl_matrix_long_double.h gsl_matrix_short.h gsl_matrix_uchar.h gsl_matrix_uint.h gsl_matrix_ulong.h gsl_matrix_ushort.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/matrix' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/matrix' Making install in permutation make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/permutation' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/permutation' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_permutation.h gsl_permute.h gsl_permute_char.h gsl_permute_complex_double.h gsl_permute_complex_float.h gsl_permute_complex_long_double.h gsl_permute_double.h gsl_permute_float.h gsl_permute_int.h gsl_permute_long.h gsl_permute_long_double.h gsl_permute_short.h gsl_permute_uchar.h gsl_permute_uint.h gsl_permute_ulong.h gsl_permute_ushort.h gsl_permute_vector.h gsl_permute_vector_char.h gsl_permute_vector_complex_double.h gsl_permute_vector_complex_float.h gsl_permute_vector_complex_long_double.h gsl_permute_vector_double.h gsl_permute_vector_float.h gsl_permute_vector_int.h gsl_permute_vector_long.h gsl_permute_vector_long_double.h gsl_permute_vector_short.h gsl_permute_vector_uchar.h gsl_permute_vector_uint.h gsl_permute_vector_ulong.h gsl_permute_vector_ushort.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/permutation' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/permutation' Making install in combination make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/combination' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/combination' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_combination.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/combination' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/combination' Making install in multiset make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiset' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiset' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_multiset.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiset' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiset' Making install in sort make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sort' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sort' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_heapsort.h gsl_sort.h gsl_sort_char.h gsl_sort_double.h gsl_sort_float.h gsl_sort_int.h gsl_sort_long.h gsl_sort_long_double.h gsl_sort_short.h gsl_sort_uchar.h gsl_sort_uint.h gsl_sort_ulong.h gsl_sort_ushort.h gsl_sort_vector.h gsl_sort_vector_char.h gsl_sort_vector_double.h gsl_sort_vector_float.h gsl_sort_vector_int.h gsl_sort_vector_long.h gsl_sort_vector_long_double.h gsl_sort_vector_short.h gsl_sort_vector_uchar.h gsl_sort_vector_uint.h gsl_sort_vector_ulong.h gsl_sort_vector_ushort.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sort' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sort' Making install in ieee-utils make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ieee-utils' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ieee-utils' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_ieee_utils.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ieee-utils' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ieee-utils' Making install in cblas make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cblas' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cblas' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c libgslcblas.la '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib' libtool: install: /usr/bin/install -c .libs/libgslcblas.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgslcblas.la libtool: install: /usr/bin/install -c .libs/libgslcblas.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgslcblas.a libtool: install: chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgslcblas.a libtool: install: ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgslcblas.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_cblas.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cblas' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cblas' Making install in blas make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/blas' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/blas' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_blas.h gsl_blas_types.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/blas' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/blas' Making install in linalg make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/linalg' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/linalg' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_linalg.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/linalg' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/linalg' Making install in eigen make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/eigen' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/eigen' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_eigen.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/eigen' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/eigen' Making install in specfunc make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/specfunc' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/specfunc' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_sf.h gsl_sf_airy.h gsl_sf_bessel.h gsl_sf_clausen.h gsl_sf_coulomb.h gsl_sf_coupling.h gsl_sf_dawson.h gsl_sf_debye.h gsl_sf_dilog.h gsl_sf_elementary.h gsl_sf_ellint.h gsl_sf_elljac.h gsl_sf_erf.h gsl_sf_exp.h gsl_sf_expint.h gsl_sf_fermi_dirac.h gsl_sf_gamma.h gsl_sf_gegenbauer.h gsl_sf_hyperg.h gsl_sf_laguerre.h gsl_sf_lambert.h gsl_sf_legendre.h gsl_sf_log.h gsl_sf_mathieu.h gsl_sf_pow_int.h gsl_sf_psi.h gsl_sf_result.h gsl_sf_synchrotron.h gsl_sf_transport.h gsl_sf_trig.h gsl_sf_zeta.h gsl_specfunc.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/specfunc' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/specfunc' Making install in dht make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/dht' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/dht' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_dht.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/dht' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/dht' Making install in qrng make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/qrng' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/qrng' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_qrng.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/qrng' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/qrng' Making install in rng make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/rng' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/rng' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_rng.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/rng' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/rng' Making install in randist make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/randist' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/randist' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_randist.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/randist' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/randist' Making install in fft make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fft' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fft' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_fft.h gsl_fft_complex.h gsl_fft_halfcomplex.h gsl_fft_real.h gsl_dft_complex.h gsl_dft_complex_float.h gsl_fft_complex_float.h gsl_fft_halfcomplex_float.h gsl_fft_real_float.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fft' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fft' Making install in poly make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/poly' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/poly' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_poly.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/poly' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/poly' Making install in fit make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fit' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fit' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_fit.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fit' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/fit' Making install in multifit make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multifit' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multifit' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_multifit.h gsl_multifit_nlin.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multifit' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multifit' Making install in statistics make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/statistics' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/statistics' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_statistics.h gsl_statistics_char.h gsl_statistics_double.h gsl_statistics_float.h gsl_statistics_int.h gsl_statistics_long.h gsl_statistics_long_double.h gsl_statistics_short.h gsl_statistics_uchar.h gsl_statistics_uint.h gsl_statistics_ulong.h gsl_statistics_ushort.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/statistics' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/statistics' Making install in siman make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/siman' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/siman' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_siman.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/siman' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/siman' Making install in sum make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sum' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sum' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_sum.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sum' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/sum' Making install in integration make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/integration' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/integration' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_integration.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/integration' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/integration' Making install in interpolation make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/interpolation' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/interpolation' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_interp.h gsl_spline.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/interpolation' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/interpolation' Making install in histogram make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/histogram' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/histogram' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_histogram.h gsl_histogram2d.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/histogram' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/histogram' Making install in ode-initval make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ode-initval' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ode-initval' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_odeiv.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ode-initval' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ode-initval' Making install in roots make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/roots' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/roots' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_roots.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/roots' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/roots' Making install in multiroots make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiroots' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiroots' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_multiroots.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiroots' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multiroots' Making install in min make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/min' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/min' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_min.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/min' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/min' Making install in multimin make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multimin' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multimin' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_multimin.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multimin' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/multimin' Making install in monte make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/monte' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/monte' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_monte.h gsl_monte_vegas.h gsl_monte_miser.h gsl_monte_plain.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/monte' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/monte' Making install in ntuple make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ntuple' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ntuple' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_ntuple.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ntuple' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/ntuple' Making install in diff make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/diff' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/diff' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_diff.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/diff' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/diff' Making install in deriv make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/deriv' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/deriv' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_deriv.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/deriv' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/deriv' Making install in cdf make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cdf' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cdf' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_cdf.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cdf' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/cdf' Making install in wavelet make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/wavelet' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/wavelet' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_wavelet.h gsl_wavelet2d.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/wavelet' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/wavelet' Making install in bspline make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/bspline' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/bspline' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_bspline.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/bspline' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/bspline' Making install in doc make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/doc' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/doc' make[3]: Nothing to be done for 'install-exec-am'. test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/info" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/info" /usr/bin/install -c -m 644 ./gsl-ref.info ./gsl-ref.info-1 ./gsl-ref.info-2 ./gsl-ref.info-3 ./gsl-ref.info-4 ./gsl-ref.info-5 ./gsl-ref.info-6 '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/info' install-info --info-dir='/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/info' '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/info/gsl-ref.info' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man1" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man1" /usr/bin/install -c -m 644 gsl-config.1 gsl-randist.1 gsl-histogram.1 '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man1' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man3" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man3" /usr/bin/install -c -m 644 gsl.3 '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man3' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/doc' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/doc' make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib" /bin/sh ./libtool --mode=install /usr/bin/install -c libgsl.la '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib' libtool: install: /usr/bin/install -c .libs/libgsl.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgsl.la libtool: install: /usr/bin/install -c .libs/libgsl.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgsl.a libtool: install: chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgsl.a libtool: install: ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgsl.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" /bin/sh ./libtool --mode=install /usr/bin/install -c gsl-randist gsl-histogram '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin' libtool: install: /usr/bin/install -c gsl-randist /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/gsl-randist libtool: install: /usr/bin/install -c gsl-histogram /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/gsl-histogram test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" /usr/bin/install -c gsl-config '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/aclocal" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/aclocal" /usr/bin/install -c -m 644 gsl.m4 '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/aclocal' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig" /usr/bin/install -c -m 644 gsl.pc '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl" /usr/bin/install -c -m 644 gsl_math.h gsl_pow_int.h gsl_nan.h gsl_machine.h gsl_mode.h gsl_precision.h gsl_types.h gsl_version.h gsl_minmax.h gsl_inline.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/gsl' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14' mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/gsl touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/gsl/.d cp /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gsl-1.14/COPYING /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/gsl/COPYING tar xzf /builddir/build/BUILD/release_6-0-0/extern/gzstream.tgz -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ ### ...applying gzstream patch gzstream.patch patch -s -p0 -d /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ < /builddir/build/BUILD/release_6-0-0/extern/gzstream.patch mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/.d make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gzstream \ BUILD_DIR=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gzstream \ ZLIB_INCL= ZLIB_LIB=-lz make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gzstream' g++ -I. -O -c -o gzstream.o gzstream.cpp ar cr /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gzstream/libgzstream.a gzstream.o make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gzstream' mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include cp /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gzstream/gzstream.h /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include cp /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gzstream/libgzstream.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgzstream.a mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/gzstream touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/gzstream/.d cp /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/gzstream/COPYING.LIB /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/gzstream/COPYING.LIB mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ tar xzf /builddir/build/BUILD/release_6-0-0/extern/libarchive-3.1.2.tar.gz -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2; ./configure --build=x86_64-redhat-linux \ --enable-shared=no --disable-shared \ --enable-static=yes --enable-static=yes \ --disable-bsdtar --disable-bsdcpio \ --without-lzma --without-lzmadec --without-iconv \ --without-xml2 --without-expat --without-openssl --without-nettle \ --enable-largefile \ --prefix=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28 \ --includedir=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include \ --libdir=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for strip... (cached) strip checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking acl/libacl.h usability... no checking acl/libacl.h presence... no checking for acl/libacl.h... no checking attr/xattr.h usability... no checking attr/xattr.h presence... no checking for attr/xattr.h... no checking copyfile.h usability... no checking copyfile.h presence... no checking for copyfile.h... no checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking ext2fs/ext2_fs.h usability... no checking ext2fs/ext2_fs.h presence... no checking for ext2fs/ext2_fs.h... no checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking whether EXT2_IOC_GETFLAGS is usable... no checking for inttypes.h... (cached) yes checking io.h usability... no checking io.h presence... no checking for io.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking linux/fiemap.h usability... yes checking linux/fiemap.h presence... yes checking for linux/fiemap.h... yes checking linux/fs.h usability... yes checking linux/fs.h presence... yes checking for linux/fs.h... yes checking linux/magic.h usability... yes checking linux/magic.h presence... yes checking for linux/magic.h... yes checking linux/types.h usability... yes checking linux/types.h presence... yes checking for linux/types.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking paths.h usability... yes checking paths.h presence... yes checking for paths.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking spawn.h usability... yes checking spawn.h presence... yes checking for spawn.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... 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(cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for wincrypt.h... no checking for winioctl.h... no checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for inflate in -lz... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for BZ2_bzDecompressInit in -lbz2... yes checking lzo/lzoconf.h usability... no checking lzo/lzoconf.h presence... no checking for lzo/lzoconf.h... no checking lzo/lzo1x.h usability... no checking lzo/lzo1x.h presence... no checking for lzo/lzo1x.h... no checking for lzo1x_decompress_safe in -llzo2... no checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking for regcomp... yes checking for an ANSI C-conforming const... yes checking for uid_t in sys/types.h... yes checking for mode_t... yes checking for off_t... yes checking for size_t... yes checking for id_t... yes checking for uintptr_t... yes checking for struct tm.tm_gmtoff... yes checking for struct tm.__tm_gmtoff... no checking for struct statfs.f_namemax... no checking for struct statvfs.f_iosize... no checking for struct stat.st_birthtime... no checking for struct stat.st_birthtimespec.tv_nsec... no checking for struct stat.st_mtimespec.tv_nsec... no checking for struct stat.st_mtim.tv_nsec... yes checking for struct stat.st_mtime_n... no checking for struct stat.st_umtime... no checking for struct stat.st_mtime_usec... no checking for struct stat.st_blksize... yes checking for struct stat.st_flags... no checking for uintmax_t... yes checking for unsigned long long... yes checking for unsigned long long int... yes checking for long long int... yes checking for intmax_t... yes checking for uintmax_t... 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(cached) no checking sys/sysmacros.h usability... yes checking sys/sysmacros.h presence... yes checking for sys/sysmacros.h... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether lstat accepts an empty string... no checking whether stat accepts an empty string... no checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... yes checking for strftime... yes checking for vprintf... yes checking for _doprnt... no checking for CreateHardLinkA... no checking for chflags... no checking for chown... yes checking for chroot... yes checking for ctime_r... yes checking for dirfd... yes checking for fchdir... yes checking for fchflags... no checking for fchmod... yes checking for fchown... yes checking for fcntl... yes checking for fdopendir... yes checking for fork... yes checking for fstat... yes checking for fstatat... yes checking for fstatfs... yes checking for fstatvfs... yes checking for ftruncate... yes checking for futimens... yes checking for futimes... yes checking for futimesat... yes checking for geteuid... yes checking for getpid... yes checking for getgrgid_r... yes checking for getgrnam_r... yes checking for getpwnam_r... yes checking for getpwuid_r... yes checking for getvfsbyname... no checking for gmtime_r... yes checking for lchflags... no checking for lchmod... yes checking for lchown... yes checking for link... yes checking for localtime_r... yes checking for lstat... yes checking for lutimes... yes checking for mbrtowc... yes checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for mkfifo... yes checking for mknod... yes checking for mkstemp... yes checking for nl_langinfo... yes checking for openat... yes checking for pipe... yes checking for poll... yes checking for posix_spawnp... yes checking for readlink... yes checking for readlinkat... yes checking for select... yes checking for setenv... yes checking for setlocale... yes checking for sigaction... yes checking for statfs... yes checking for statvfs... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strncpy_s... no checking for strrchr... yes checking for symlink... yes checking for timegm... yes checking for tzset... yes checking for unsetenv... yes checking for utime... yes checking for utimensat... yes checking for utimes... yes checking for vfork... yes checking for wcrtomb... yes checking for wcscmp... yes checking for wcscpy... yes checking for wcslen... yes checking for wctomb... yes checking for wmemcmp... yes checking for wmemcpy... yes checking for _ctime64_s... no checking for _fseeki64... no checking for _get_timezone... no checking for _localtime64_s... no checking for _mkgmtime64... no checking for cygwin_conv_path... no checking whether D_MD_ORDER is declared... no checking for struct dirent.d_namlen... no checking for attr/xattr.h... (cached) no checking sys/xattr.h usability... yes checking sys/xattr.h presence... yes checking for sys/xattr.h... yes checking sys/ea.h usability... no checking sys/ea.h presence... no checking for sys/ea.h... no checking for setxattr in -lattr... no checking for extattr_get_file... no checking for extattr_list_file... no checking for extattr_set_fd... no checking for extattr_set_file... no checking for fgetxattr... yes checking for flistxattr... yes checking for fsetxattr... yes checking for getxattr... yes checking for lgetxattr... yes checking for listxattr... yes checking for llistxattr... yes checking for lsetxattr... yes checking for fgetea... no checking for flistea... no checking for fsetea... no checking for getea... no checking for lgetea... no checking for listea... no checking for llistea... no checking for lsetea... no checking whether EXTATTR_NAMESPACE_USER is declared... no checking for sys/acl.h... (cached) no checking for acl_get_file in -lacl... no checking for acl_create_entry... no checking for acl_init... no checking for acl_set_fd... no checking for acl_set_fd_np... no checking for acl_set_file... no checking for acl_permset_t... no checking for acl_get_perm_np... no checking for acl_get_perm... no checking for acl_get_link... no checking for acl_get_link_np... no checking whether ACL_USER is declared... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking support for ARCHIVE_CRYPTO_MD5_LIBC... no checking support for ARCHIVE_CRYPTO_MD5_LIBSYSTEM... no checking support for ARCHIVE_CRYPTO_RMD160_LIBC... no checking support for ARCHIVE_CRYPTO_SHA1_LIBC... no checking support for ARCHIVE_CRYPTO_SHA1_LIBSYSTEM... no checking support for ARCHIVE_CRYPTO_SHA256_LIBC... no checking support for ARCHIVE_CRYPTO_SHA256_LIBC2... no checking support for ARCHIVE_CRYPTO_SHA256_LIBC3... no checking support for ARCHIVE_CRYPTO_SHA256_LIBSYSTEM... no checking support for ARCHIVE_CRYPTO_SHA384_LIBC... no checking support for ARCHIVE_CRYPTO_SHA384_LIBC2... no checking support for ARCHIVE_CRYPTO_SHA384_LIBC3... no checking support for ARCHIVE_CRYPTO_SHA384_LIBSYSTEM... no checking support for ARCHIVE_CRYPTO_SHA512_LIBC... no checking support for ARCHIVE_CRYPTO_SHA512_LIBC2... no checking support for ARCHIVE_CRYPTO_SHA512_LIBC3... no checking support for ARCHIVE_CRYPTO_SHA512_LIBSYSTEM... no checking md5.h usability... no checking md5.h presence... no checking for md5.h... no checking ripemd.h usability... no checking ripemd.h presence... no checking for ripemd.h... no checking sha.h usability... no checking sha.h presence... no checking for sha.h... no checking sha256.h usability... no checking sha256.h presence... no checking for sha256.h... no checking sha512.h usability... no checking sha512.h presence... no checking for sha512.h... no checking for main in -lmd... no checking support for ARCHIVE_CRYPTO_MD5_LIBMD... no checking support for ARCHIVE_CRYPTO_RMD160_LIBMD... no checking support for ARCHIVE_CRYPTO_SHA1_LIBMD... no checking support for ARCHIVE_CRYPTO_SHA256_LIBMD... no checking support for ARCHIVE_CRYPTO_SHA512_LIBMD... no configure: creating ./config.status config.status: creating Makefile config.status: creating build/pkgconfig/libarchive.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2 all make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2' cat ./libarchive/test/test_*.c | grep DEFINE_TEST > libarchive/test/list.h cat ./tar/test/test_*.c | grep DEFINE_TEST > tar/test/list.h cat ./cpio/test/test_*.c | grep DEFINE_TEST > cpio/test/list.h make all-am make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2' CC libarchive/archive_acl.lo CC libarchive/archive_check_magic.lo CC libarchive/archive_cmdline.lo CC libarchive/archive_crypto.lo CC libarchive/archive_entry.lo CC libarchive/archive_entry_copy_stat.lo CC libarchive/archive_entry_link_resolver.lo CC libarchive/archive_entry_sparse.lo CC libarchive/archive_entry_stat.lo CC libarchive/archive_entry_strmode.lo CC libarchive/archive_entry_xattr.lo CC libarchive/archive_getdate.lo CC libarchive/archive_match.lo CC libarchive/archive_options.lo CC libarchive/archive_pathmatch.lo CC libarchive/archive_ppmd7.lo CC libarchive/archive_rb.lo CC libarchive/archive_read.lo CC libarchive/archive_read_append_filter.lo CC libarchive/archive_read_data_into_fd.lo CC libarchive/archive_read_disk_entry_from_file.lo CC libarchive/archive_read_disk_posix.lo libarchive/archive_read_disk_posix.c: In function 'tree_dir_next_posix': libarchive/archive_read_disk_posix.c:2345:17: warning: 'readdir_r' is deprecated [-Wdeprecated-declarations] 2345 | r = readdir_r(t->d, t->dirent, &t->de); | ^ In file included from libarchive/archive_read_disk_posix.c:72: /usr/include/dirent.h:183:12: note: declared here 183 | extern int readdir_r (DIR *__restrict __dirp, | ^~~~~~~~~ CC libarchive/archive_read_disk_set_standard_lookup.lo CC libarchive/archive_read_extract.lo CC libarchive/archive_read_open_fd.lo CC libarchive/archive_read_open_file.lo CC libarchive/archive_read_open_filename.lo libarchive/archive_read_open_filename.c: In function 'file_open': libarchive/archive_read_open_filename.c:283:25: warning: '%S' directive argument is null [-Wformat-overflow=] 283 | archive_set_error(a, errno, "Can't stat '%S'", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 | wfilename); | ~~~~~~~~~~ CC libarchive/archive_read_open_memory.lo CC libarchive/archive_read_set_format.lo CC libarchive/archive_read_set_options.lo CC libarchive/archive_read_support_filter_all.lo CC libarchive/archive_read_support_filter_bzip2.lo CC libarchive/archive_read_support_filter_compress.lo CC libarchive/archive_read_support_filter_grzip.lo CC libarchive/archive_read_support_filter_gzip.lo CC libarchive/archive_read_support_filter_lrzip.lo CC libarchive/archive_read_support_filter_lzop.lo CC libarchive/archive_read_support_filter_none.lo CC libarchive/archive_read_support_filter_program.lo CC libarchive/archive_read_support_filter_rpm.lo CC libarchive/archive_read_support_filter_uu.lo CC libarchive/archive_read_support_filter_xz.lo CC libarchive/archive_read_support_format_7zip.lo CC libarchive/archive_read_support_format_all.lo CC libarchive/archive_read_support_format_ar.lo CC libarchive/archive_read_support_format_by_code.lo CC libarchive/archive_read_support_format_cab.lo CC libarchive/archive_read_support_format_cpio.lo CC libarchive/archive_read_support_format_empty.lo CC libarchive/archive_read_support_format_iso9660.lo CC libarchive/archive_read_support_format_lha.lo CC libarchive/archive_read_support_format_mtree.lo CC libarchive/archive_read_support_format_rar.lo CC libarchive/archive_read_support_format_raw.lo CC libarchive/archive_read_support_format_tar.lo CC libarchive/archive_read_support_format_xar.lo CC libarchive/archive_read_support_format_zip.lo CC libarchive/archive_string.lo CC libarchive/archive_string_sprintf.lo CC libarchive/archive_util.lo CC libarchive/archive_virtual.lo CC libarchive/archive_write.lo CC libarchive/archive_write_disk_acl.lo CC libarchive/archive_write_disk_posix.lo CC libarchive/archive_write_disk_set_standard_lookup.lo CC libarchive/archive_write_open_fd.lo CC libarchive/archive_write_open_file.lo CC libarchive/archive_write_open_filename.lo CC libarchive/archive_write_open_memory.lo CC libarchive/archive_write_add_filter.lo CC libarchive/archive_write_add_filter_b64encode.lo CC libarchive/archive_write_add_filter_by_name.lo CC libarchive/archive_write_add_filter_bzip2.lo CC libarchive/archive_write_add_filter_compress.lo CC libarchive/archive_write_add_filter_grzip.lo CC libarchive/archive_write_add_filter_gzip.lo CC libarchive/archive_write_add_filter_lrzip.lo CC libarchive/archive_write_add_filter_lzop.lo CC libarchive/archive_write_add_filter_none.lo CC libarchive/archive_write_add_filter_program.lo CC libarchive/archive_write_add_filter_uuencode.lo CC libarchive/archive_write_add_filter_xz.lo CC libarchive/archive_write_set_format.lo CC libarchive/archive_write_set_format_7zip.lo CC libarchive/archive_write_set_format_ar.lo libarchive/archive_write_set_format_ar.c: In function 'archive_write_ar_header': libarchive/archive_write_set_format_ar.c:184:9: warning: 'strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 184 | strncpy(&buff[AR_fmag_offset], "`\n", 2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libarchive/archive_write_set_format_ar.c:193:17: warning: 'strncpy' output truncated before terminating nul copying 9 bytes from a string of the same length [-Wstringop-truncation] 193 | strncpy(buff + AR_name_offset, "__.SYMDEF", 9); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libarchive/archive_write_set_format_ar.c:293:25: warning: 'strncpy' output truncated before terminating nul copying 3 bytes from a string of the same length [-Wstringop-truncation] 293 | strncpy(buff + AR_name_offset, "#1/", 3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libarchive/archive_write_set_format_ar.c:289:25: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 289 | strncpy(&buff[AR_name_offset], filename, strlen(filename)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libarchive/archive_write_set_format_ar.c:288:21: note: length computed here 288 | if (strlen(filename) <= 16 && strchr(filename, ' ') == NULL) { | ^~~~~~~~~~~~~~~~ libarchive/archive_write_set_format_ar.c:229:25: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 229 | strncpy(&buff[AR_name_offset], | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 | filename, strlen(filename)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ libarchive/archive_write_set_format_ar.c:228:21: note: length computed here 228 | if (strlen(filename) <= 15) { | ^~~~~~~~~~~~~~~~ CC libarchive/archive_write_set_format_by_name.lo CC libarchive/archive_write_set_format_cpio.lo CC libarchive/archive_write_set_format_cpio_newc.lo CC libarchive/archive_write_set_format_iso9660.lo CC libarchive/archive_write_set_format_mtree.lo CC libarchive/archive_write_set_format_pax.lo CC libarchive/archive_write_set_format_shar.lo CC libarchive/archive_write_set_format_ustar.lo CC libarchive/archive_write_set_format_v7tar.lo CC libarchive/archive_write_set_format_gnutar.lo CC libarchive/archive_write_set_format_xar.lo CC libarchive/archive_write_set_format_zip.lo CC libarchive/archive_write_set_options.lo CC libarchive/filter_fork_posix.lo CCLD libarchive.la CC libarchive_fe/libarchive_fe_la-err.lo CC libarchive_fe/libarchive_fe_la-line_reader.lo CCLD libarchive_fe.la make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2' make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2' make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2 install-includeHEADERS install-libLTLIBRARIES make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2' /usr/bin/mkdir -p '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include' /usr/bin/install -c -m 644 libarchive/archive.h libarchive/archive_entry.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include' /usr/bin/mkdir -p '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c libarchive.la '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib' libtool: install: /usr/bin/install -c .libs/libarchive.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libarchive.la libtool: install: /usr/bin/install -c .libs/libarchive.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libarchive.a libtool: install: chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libarchive.a libtool: install: ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libarchive.a libtool: finish: PATH="/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/sbin" ldconfig -n /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2' mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/libarchive touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/libarchive/.d cp /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libarchive-3.1.2/COPYING /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/libarchive/COPYING mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ tar xzf /builddir/build/BUILD/release_6-0-0/extern/libpng-1.5.19.tar.gz -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19; ./configure --build=x86_64 \ --enable-shared=no --disable-shared \ --enable-static=yes --enable-static=yes \ --prefix=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28 \ --includedir=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include \ --libdir=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking dependency style of gcc... gcc3 checking build system type... x86_64-pc-none checking host system type... x86_64-pc-none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking how to print strings... printf checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking how to run the C preprocessor... gcc -E checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for gawk... (cached) gawk checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-none file names to x86_64-pc-none format... func_convert_file_noop checking how to convert x86_64-pc-none file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... unknown checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking for ANSI C header files... (cached) yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for C/C++ restrict keyword... __restrict checking for working strtod... yes checking for memset... yes checking for pow... no checking for pow in -lm... yes checking for zlibVersion in -lz... yes checking for feenableexcept in -lm... yes checking for feenableexcept... yes checking if using Solaris linker... no checking if libraries can be versioned... yes checking for symbol prefix... configure: pkgconfig directory is ${libdir}/pkgconfig configure: Extra options for compiler: checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libpng.pc config.status: creating libpng-config config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19 install make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19' rm -f pnglibconf.dfn pnglibconf.pre pnglibconf.dfn.? gawk -f ./scripts/options.awk out="pnglibconf.pre"\ version=search ./pngconf.h ./scripts/pnglibconf.dfa\ ./pngusr.dfa 1>&2 gawk -f ./scripts/options.awk out="pnglibconf.dfn.1" pnglibconf.pre 1>&2 mv pnglibconf.dfn.1 pnglibconf.dfn rm -f pnglibconf.out pnglibconf.out.c pnglibconf.out.? test -d scripts || mkdir scripts || test -d scripts echo '#include "pnglibconf.dfn"' >pnglibconf.out.c gcc -E -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG\ -DPNGLIB_LIBNAME='PNG15_0' -DPNGLIB_VERSION='1.5.19' -DSYMBOL_PREFIX='' -DPNG_NO_USE_READ_MACROS -DPNG_BUILDING_SYMBOL_TABLE pnglibconf.out.c > pnglibconf.out.1 gawk -f "./scripts/dfn.awk" out="pnglibconf.out.2" pnglibconf.out.1 1>&2 mv pnglibconf.out.2 pnglibconf.out rm -f pnglibconf.h cp pnglibconf.out pnglibconf.h /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c -o libpng15_la-png.lo `test -f 'png.c' || echo './'`png.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c png.c -o libpng15_la-png.o mv -f .deps/libpng15_la-png.Tpo .deps/libpng15_la-png.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c -o libpng15_la-pngerror.lo `test -f 'pngerror.c' || echo './'`pngerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c pngerror.c -o libpng15_la-pngerror.o mv -f .deps/libpng15_la-pngerror.Tpo .deps/libpng15_la-pngerror.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngget.lo -MD -MP -MF .deps/libpng15_la-pngget.Tpo -c -o libpng15_la-pngget.lo `test -f 'pngget.c' || echo './'`pngget.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngget.lo -MD -MP -MF .deps/libpng15_la-pngget.Tpo -c pngget.c -o libpng15_la-pngget.o mv -f .deps/libpng15_la-pngget.Tpo .deps/libpng15_la-pngget.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c -o libpng15_la-pngmem.lo `test -f 'pngmem.c' || echo './'`pngmem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c pngmem.c -o libpng15_la-pngmem.o mv -f .deps/libpng15_la-pngmem.Tpo .deps/libpng15_la-pngmem.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c -o libpng15_la-pngpread.lo `test -f 'pngpread.c' || echo './'`pngpread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c pngpread.c -o libpng15_la-pngpread.o mv -f .deps/libpng15_la-pngpread.Tpo .deps/libpng15_la-pngpread.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c -o libpng15_la-pngread.lo `test -f 'pngread.c' || echo './'`pngread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c pngread.c -o libpng15_la-pngread.o mv -f .deps/libpng15_la-pngread.Tpo .deps/libpng15_la-pngread.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c -o libpng15_la-pngrio.lo `test -f 'pngrio.c' || echo './'`pngrio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c pngrio.c -o libpng15_la-pngrio.o mv -f .deps/libpng15_la-pngrio.Tpo .deps/libpng15_la-pngrio.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c -o libpng15_la-pngrtran.lo `test -f 'pngrtran.c' || echo './'`pngrtran.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c pngrtran.c -o libpng15_la-pngrtran.o mv -f .deps/libpng15_la-pngrtran.Tpo .deps/libpng15_la-pngrtran.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c -o libpng15_la-pngrutil.lo `test -f 'pngrutil.c' || echo './'`pngrutil.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c pngrutil.c -o libpng15_la-pngrutil.o mv -f .deps/libpng15_la-pngrutil.Tpo .deps/libpng15_la-pngrutil.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c -o libpng15_la-pngset.lo `test -f 'pngset.c' || echo './'`pngset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c pngset.c -o libpng15_la-pngset.o mv -f .deps/libpng15_la-pngset.Tpo .deps/libpng15_la-pngset.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c -o libpng15_la-pngtrans.lo `test -f 'pngtrans.c' || echo './'`pngtrans.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c pngtrans.c -o libpng15_la-pngtrans.o mv -f .deps/libpng15_la-pngtrans.Tpo .deps/libpng15_la-pngtrans.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c -o libpng15_la-pngwio.lo `test -f 'pngwio.c' || echo './'`pngwio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c pngwio.c -o libpng15_la-pngwio.o mv -f .deps/libpng15_la-pngwio.Tpo .deps/libpng15_la-pngwio.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c -o libpng15_la-pngwrite.lo `test -f 'pngwrite.c' || echo './'`pngwrite.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c pngwrite.c -o libpng15_la-pngwrite.o mv -f .deps/libpng15_la-pngwrite.Tpo .deps/libpng15_la-pngwrite.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c -o libpng15_la-pngwtran.lo `test -f 'pngwtran.c' || echo './'`pngwtran.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c pngwtran.c -o libpng15_la-pngwtran.o mv -f .deps/libpng15_la-pngwtran.Tpo .deps/libpng15_la-pngwtran.Plo /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c -o libpng15_la-pngwutil.lo `test -f 'pngwutil.c' || echo './'`pngwutil.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -g -O2 -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c pngwutil.c -o libpng15_la-pngwutil.o mv -f .deps/libpng15_la-pngwutil.Tpo .deps/libpng15_la-pngwutil.Plo rm -f scripts/vers.out scripts/vers.out.c scripts/vers.out.? test -d scripts || mkdir scripts || test -d scripts echo '#include "scripts/vers.dfn"' >scripts/vers.out.c gcc -E -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG\ -DPNGLIB_LIBNAME='PNG15_0' -DPNGLIB_VERSION='1.5.19' -DSYMBOL_PREFIX='' -DPNG_NO_USE_READ_MACROS -DPNG_BUILDING_SYMBOL_TABLE scripts/vers.out.c > scripts/vers.out.1 gawk -f "./scripts/dfn.awk" out="scripts/vers.out.2" scripts/vers.out.1 1>&2 mv scripts/vers.out.2 scripts/vers.out rm -f libpng.vers cp scripts/vers.out libpng.vers /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -no-undefined -export-dynamic -version-number 15:19:0 -Wl,--version-script=libpng.vers -o libpng15.la -rpath /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib libpng15_la-png.lo libpng15_la-pngerror.lo libpng15_la-pngget.lo libpng15_la-pngmem.lo libpng15_la-pngpread.lo libpng15_la-pngread.lo libpng15_la-pngrio.lo libpng15_la-pngrtran.lo libpng15_la-pngrutil.lo libpng15_la-pngset.lo libpng15_la-pngtrans.lo libpng15_la-pngwio.lo libpng15_la-pngwrite.lo libpng15_la-pngwtran.lo libpng15_la-pngwutil.lo -lm -lz -lm libtool: link: ar cru .libs/libpng15.a libpng15_la-png.o libpng15_la-pngerror.o libpng15_la-pngget.o libpng15_la-pngmem.o libpng15_la-pngpread.o libpng15_la-pngread.o libpng15_la-pngrio.o libpng15_la-pngrtran.o libpng15_la-pngrutil.o libpng15_la-pngset.o libpng15_la-pngtrans.o libpng15_la-pngwio.o libpng15_la-pngwrite.o libpng15_la-pngwtran.o libpng15_la-pngwutil.o libtool: link: ranlib .libs/libpng15.a libtool: link: ( cd ".libs" && rm -f "libpng15.la" && ln -s "../libpng15.la" "libpng15.la" ) cp libpng-config libpng15-config cp libpng.pc libpng15.pc depbase=`echo pngtest.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -g -O2 -MT pngtest.o -MD -MP -MF $depbase.Tpo -c -o pngtest.o pngtest.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -o pngtest pngtest.o libpng15.la -lm -lz -lm libtool: link: gcc -g -O2 -o pngtest pngtest.o ./.libs/libpng15.a -lz -lm depbase=`echo contrib/libtests/pngvalid.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ gcc -DHAVE_CONFIG_H -I. -g -O2 -MT contrib/libtests/pngvalid.o -MD -MP -MF $depbase.Tpo -c -o contrib/libtests/pngvalid.o contrib/libtests/pngvalid.c &&\ mv -f $depbase.Tpo $depbase.Po /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -o pngvalid contrib/libtests/pngvalid.o libpng15.la -lm -lz -lm libtool: link: gcc -g -O2 -o pngvalid contrib/libtests/pngvalid.o ./.libs/libpng15.a -lz -lm make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19' /usr/bin/mkdir -p '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin' /usr/bin/install -c libpng15-config '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin' /usr/bin/mkdir -p '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib' /bin/sh ./libtool --mode=install /usr/bin/install -c libpng15.la '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib' libtool: install: /usr/bin/install -c .libs/libpng15.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.la libtool: install: /usr/bin/install -c .libs/libpng15.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a libtool: install: chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a libtool: install: ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a make install-exec-hook make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19' + cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib + for ext in a dll.a so so.15.19 la sl dylib + rm -f libpng.a + test -f libpng15.a + ln -s libpng15.a libpng.a + for ext in a dll.a so so.15.19 la sl dylib + rm -f libpng.dll.a + test -f libpng15.dll.a + for ext in a dll.a so so.15.19 la sl dylib + rm -f libpng.so + test -f libpng15.so + for ext in a dll.a so so.15.19 la sl dylib + rm -f libpng.so.15.19 + test -f libpng15.so.15.19 + for ext in a dll.a so so.15.19 la sl dylib + rm -f libpng.la + test -f libpng15.la + ln -s libpng15.la libpng.la + for ext in a dll.a so so.15.19 la sl dylib + rm -f libpng.sl + test -f libpng15.sl + for ext in a dll.a so so.15.19 la sl dylib + rm -f libpng.dylib + test -f libpng15.dylib + cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin + rm -f libpng-config + ln -s libpng15-config libpng-config make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19' /usr/bin/mkdir -p '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man3' /usr/bin/install -c -m 644 libpng.3 libpngpf.3 '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man3' /usr/bin/mkdir -p '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man5' /usr/bin/install -c -m 644 png.5 '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/share/man/man5' /usr/bin/mkdir -p '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15' /usr/bin/install -c -m 644 pnglibconf.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15' /usr/bin/mkdir -p '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig' /usr/bin/install -c -m 644 libpng15.pc '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig' /usr/bin/mkdir -p '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15' /usr/bin/install -c -m 644 png.h pngconf.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15' make install-data-hook make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19' + cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include + for f in pnglibconf.h png.h pngconf.h + rm -f pnglibconf.h + ln -s libpng15/pnglibconf.h pnglibconf.h + for f in pnglibconf.h png.h pngconf.h + rm -f png.h + ln -s libpng15/png.h png.h + for f in pnglibconf.h png.h pngconf.h + rm -f pngconf.h + ln -s libpng15/pngconf.h pngconf.h + cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig + rm -f libpng.pc + ln -s libpng15.pc libpng.pc make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19' make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libpng-1.5.19' mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ tar xzf /builddir/build/BUILD/release_6-0-0/extern/libgd-2.1.0.tar.gz -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/ cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0; ./configure --build=x86_64 \ --enable-shared=no --disable-shared \ --enable-static=yes --enable-static=yes \ --prefix=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28 \ --includedir=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include \ --libdir=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib \ --with-png=/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28 \ --without-x checking build system type... x86_64-pc-none checking host system type... x86_64-pc-none checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking whether gcc and cc understand -c and -o together... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... unknown checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... disabled checking for ANSI C header files... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for ld used by GCC... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking for iconv... yes checking for working iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking whether iconv.h defines iconv_t... yes checking for sin... no checking for sin in -lm... yes checking for deflate in -lz... yes checking libpng-config script... /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/libpng-config, cflags: -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15, libs: -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -lpng15 checking for LIBFREETYPE... no checking for LIBFONTCONFIG... no checking for jpeg_set_defaults in -ljpeg... no checking for LIBXPM... no checking for LIBVPX... no checking for LIBVPX... no checking for LIBTIFF... no checking for simple visibility declarations... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether we are building for a Win32 host... no ** Configuration summary for libgd 2.1.0: Support for Zlib: yes Support for PNG library: yes Support for JPEG library: no Support for VPX library: no Support for TIFF library: no Support for Freetype 2.x library: no Support for Fontconfig library: no Support for Xpm library: no Support for pthreads: yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating tests/test_config.h config.status: creating config/Makefile config.status: creating config/gdlib-config config.status: creating config/gdlib.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands ### ...applying GD patch libgd-2.1.0.mingwpatch patch -s -p0 -d 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mv -f .deps/webpng.Tpo .deps/webpng.Po /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -fvisibility=hidden -o webpng webpng.o libgd.la -lz -lm -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -lpng15 libtool: link: gcc -g -O2 -fvisibility=hidden -o webpng webpng.o ./.libs/libgd.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a -lz -lm gcc -DHAVE_CONFIG_H -I. -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15 -g -O2 -fvisibility=hidden -MT gdparttopng.o -MD -MP -MF .deps/gdparttopng.Tpo -c -o gdparttopng.o gdparttopng.c mv -f .deps/gdparttopng.Tpo .deps/gdparttopng.Po /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -fvisibility=hidden -o gdparttopng gdparttopng.o libgd.la -lz -lm -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -lpng15 libtool: link: gcc -g -O2 -fvisibility=hidden -o gdparttopng gdparttopng.o ./.libs/libgd.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a -lz -lm gcc -DHAVE_CONFIG_H -I. -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15 -g -O2 -fvisibility=hidden -MT gd2topng.o -MD -MP -MF .deps/gd2topng.Tpo -c -o gd2topng.o gd2topng.c mv -f .deps/gd2topng.Tpo .deps/gd2topng.Po /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -fvisibility=hidden -o gd2topng gd2topng.o libgd.la -lz -lm -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -lpng15 libtool: link: gcc -g -O2 -fvisibility=hidden -o gd2topng gd2topng.o ./.libs/libgd.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a -lz -lm gcc -DHAVE_CONFIG_H -I. -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15 -g -O2 -fvisibility=hidden -MT pngtogd2.o -MD -MP -MF .deps/pngtogd2.Tpo -c -o pngtogd2.o pngtogd2.c mv -f .deps/pngtogd2.Tpo .deps/pngtogd2.Po /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -fvisibility=hidden -o pngtogd2 pngtogd2.o libgd.la -lz -lm -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -lpng15 libtool: link: gcc -g -O2 -fvisibility=hidden -o pngtogd2 pngtogd2.o ./.libs/libgd.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a -lz -lm gcc -DHAVE_CONFIG_H -I. -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15 -g -O2 -fvisibility=hidden -MT gd2copypal.o -MD -MP -MF .deps/gd2copypal.Tpo -c -o gd2copypal.o gd2copypal.c mv -f .deps/gd2copypal.Tpo .deps/gd2copypal.Po /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -fvisibility=hidden -o gd2copypal gd2copypal.o libgd.la -lz -lm -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -lpng15 libtool: link: gcc -g -O2 -fvisibility=hidden -o gd2copypal gd2copypal.o ./.libs/libgd.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a -lz -lm gcc -DHAVE_CONFIG_H -I. -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15 -g -O2 -fvisibility=hidden -MT gd2togif.o -MD -MP -MF .deps/gd2togif.Tpo -c -o gd2togif.o gd2togif.c mv -f .deps/gd2togif.Tpo .deps/gd2togif.Po /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -fvisibility=hidden -o gd2togif gd2togif.o libgd.la -lz -lm -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -lpng15 libtool: link: gcc -g -O2 -fvisibility=hidden -o gd2togif gd2togif.o ./.libs/libgd.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a -lz -lm gcc -DHAVE_CONFIG_H -I. -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15 -g -O2 -fvisibility=hidden -MT giftogd2.o -MD -MP -MF .deps/giftogd2.Tpo -c -o giftogd2.o giftogd2.c mv -f .deps/giftogd2.Tpo .deps/giftogd2.Po /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -fvisibility=hidden -o giftogd2 giftogd2.o libgd.la -lz -lm -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -lpng15 libtool: link: gcc -g -O2 -fvisibility=hidden -o giftogd2 giftogd2.o ./.libs/libgd.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpng15.a -lz -lm make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/src' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/src' Making all in config make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/config' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/config' Making all in tests make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/tests' gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I ../tests/gdtest -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15 -g -O2 -fvisibility=hidden -MT gdtest.o -MD -MP -MF .deps/gdtest.Tpo -c -o gdtest.o `test -f 'gdtest/gdtest.c' || echo './'`gdtest/gdtest.c mv -f .deps/gdtest.Tpo .deps/gdtest.Po gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I ../tests/gdtest -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/libpng15 -g -O2 -fvisibility=hidden -MT gdhelpers.o -MD -MP -MF .deps/gdhelpers.Tpo -c -o gdhelpers.o `test -f '../src/gdhelpers.c' || echo './'`../src/gdhelpers.c mv -f .deps/gdhelpers.Tpo .deps/gdhelpers.Po rm -f libgdtest.a ar cru libgdtest.a gdtest.o gdhelpers.o ranlib libgdtest.a make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/tests' make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0' make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0' make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0 install make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0' Making install in src make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/src' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/src' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c libgd.la '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib' libtool: install: /usr/bin/install -c .libs/libgd.lai /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgd.la libtool: install: /usr/bin/install -c .libs/libgd.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgd.a libtool: install: chmod 644 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgd.a libtool: install: ranlib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgd.a ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c gdcmpgif gdtopng pngtogd webpng gdparttopng gd2topng pngtogd2 gd2copypal gd2togif giftogd2 '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin' libtool: install: /usr/bin/install -c gdcmpgif /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/gdcmpgif libtool: install: /usr/bin/install -c gdtopng /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/gdtopng libtool: install: /usr/bin/install -c pngtogd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/pngtogd libtool: install: /usr/bin/install -c webpng /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/webpng libtool: install: /usr/bin/install -c gdparttopng /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/gdparttopng libtool: install: /usr/bin/install -c gd2topng /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/gd2topng libtool: install: /usr/bin/install -c pngtogd2 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/pngtogd2 libtool: install: /usr/bin/install -c gd2copypal /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/gd2copypal libtool: install: /usr/bin/install -c gd2togif /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/gd2togif libtool: install: /usr/bin/install -c giftogd2 /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/giftogd2 test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" /usr/bin/install -c bdftogd '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include" /usr/bin/install -c -m 644 gd.h gdfx.h gd_io.h gdcache.h gdfontg.h gdfontl.h gdfontmb.h gdfonts.h gdfontt.h entities.h gd_color_map.h gd_errors.h gdpp.h '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/src' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/src' Making install in config make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/config' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/config' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin" /usr/bin/install -c gdlib-config '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin' test -z "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig" || /usr/bin/mkdir -p "/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig" /usr/bin/install -c -m 644 gdlib.pc '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/pkgconfig' make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/config' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/config' Making install in tests make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/tests' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/tests' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/tests' make[2]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0' make[3]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0' make[2]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0' make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0' mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/libgd touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/libgd/.d cp /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/libgd-2.1.0/COPYING /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/libgd/COPYING cp /builddir/build/BUILD/release_6-0-0/extern/Mayu/Mayu.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/Mayu.pl perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/Mayu.pl mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/Mayu/R cp /builddir/build/BUILD/release_6-0-0/extern/Mayu/r_lib/* /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/Mayu/R cp /builddir/build/BUILD/release_6-0-0/extern/Mayu/lib/* /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/Mayu mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/libraries/libsvm-3.0 touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/libraries/libsvm-3.0/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/libraries/libsvm-3.0/svm.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0/svm.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/common touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/common/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/common/ExtraZeroSamplesFilter.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/common/ExtraZeroSamplesFilter.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/common/LocalMaximumPeakDetector.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/common/LocalMaximumPeakDetector.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/common/ZeroSampleFiller.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/common/ZeroSampleFiller.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/frequency/FrequencyEstimatorPhysicalModel.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline 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(Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/frequency/MagnitudeLorentzian.o 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-DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/frequency/TruncatedLorentzian.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/frequency/TruncatedLorentzian.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/frequency/TruncatedLorentzianEstimator.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/frequency/TruncatedLorentzianEstimator.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/frequency/TruncatedLorentzianParameters.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/frequency/TruncatedLorentzianParameters.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/passive touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/passive/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/passive/MSDataCache.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/passive/MSDataCache.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/peakdetect touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/peakdetect/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline 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-D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/peakdetect/PeakFamilyDetectorFT.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline 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-D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/MS2NoiseFilter.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/MS2NoiseFilter.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/chromatogram_processing/ChromatogramList_XICGenerator.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/chromatogram_processing/ChromatogramList_LockmassRefiner.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/chromatogram_processing/ChromatogramList_SavitzkyGolaySmoother.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/SpectrumPeakExtractor.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:26, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:26, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:26, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.hpp:26, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:67:10: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 1, -1, false>, double, double, Eigen::DenseCoeffsBase, 1, -1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, 1, -1, false>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:172:34: required from 'class Eigen::MapBase, 1, -1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: required from 'class Eigen::internal::BlockImpl_dense, 1, -1, false, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, 1, -1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:67:14: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:175:109: required from 'Derived& Eigen::DenseBase::operator*=(const Scalar&) [with Derived = Eigen::Block, 1, -1, false>; Eigen::DenseBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:95:26: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Matrix >, double, double, Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:49:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:58:28: required from 'struct Eigen::internal::traits, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:32:8: required from 'struct Eigen::internal::traits, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: required from 'class Eigen::SelfCwiseBinaryOp, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:175:109: required from 'Derived& Eigen::DenseBase::operator*=(const Scalar&) [with Derived = Eigen::Block, 1, -1, false>; Eigen::DenseBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:95:26: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: required from 'class Eigen::SelfCwiseBinaryOp, Eigen::Block, 1, -1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:175:109: required from 'Derived& Eigen::DenseBase::operator*=(const Scalar&) [with Derived = Eigen::Block, 1, -1, false>; Eigen::DenseBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:95:26: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, 1, -1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, 1, -1, false> >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, 1, -1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, 1, -1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Block, 1, -1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:49:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Block, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:334:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Block, 1, -1, false>; Eigen::DenseBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Block, 1, -1, false>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/SpectrumPeakExtractor.cpp:67:30: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/OverlapDemultiplexer.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.hpp:84:45: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.hpp:85:45: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 1, -1, false>, double, double, Eigen::DenseCoeffsBase, 1, -1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, 1, -1, false>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:172:34: required from 'class Eigen::MapBase, 1, -1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: required from 'class Eigen::internal::BlockImpl_dense, 1, -1, false, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, 1, -1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:130:23: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, 1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:172:34: required from 'class Eigen::MapBase, -1, 1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, false, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl, -1, 1, false, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/VectorBlock.h:57:47: required from 'class Eigen::VectorBlock, -1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:130:56: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<-1, -1> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<-1, -1> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<-1, -1> >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 0, Eigen::Stride<-1, -1> >, double, double, Eigen::DenseCoeffsBase, 0, Eigen::Stride<-1, -1> >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<-1, -1> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<-1, -1> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<-1, -1> >, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:172:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<-1, -1> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Ref.h:124:34: required from 'class Eigen::RefBase, 0, Eigen::Stride<-1, -1> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Ref.h:188:76: required from 'class Eigen::Ref, 0, Eigen::Stride<-1, -1> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:176:33: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base >, double, double, Eigen::DenseCoeffsBase >, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase >, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Ref.h:124:34: required from 'class Eigen::RefBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Ref.h:229:77: required from 'class Eigen::Ref >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:176:33: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base >, double, double, Eigen::DenseCoeffsBase >, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase >, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Ref.h:124:34: required from 'class Eigen::RefBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Ref.h:229:77: required from 'class Eigen::Ref >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:176:33: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase >, -1, 1, true>, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base >, -1, 1, true>, double, double, Eigen::DenseCoeffsBase >, -1, 1, true>, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase >, -1, 1, true>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: required from 'class Eigen::internal::BlockImpl_dense >, -1, 1, true, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl >, -1, 1, true, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block >, -1, 1, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:226:52: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false> >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, -1, 1, false> >, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:100:37: required from 'class Eigen::TransposeImpl, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:57:37: required from 'class Eigen::Transpose, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Assign.h:537:123: required from 'static Derived& Eigen::internal::assign_selector::run(Derived&, const OtherDerived&) [with Derived = Eigen::Block, 1, -1, false>; OtherDerived = Eigen::Block, -1, 1, false>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Assign.h:571:62: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, -1, 1, false>; Derived = Eigen::Block, 1, -1, false>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.cpp:130:86: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/CubicHermiteSpline.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.hpp:25, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.hpp:25, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.hpp:25, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.hpp:25, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/CubicHermiteSpline.cpp:40:35: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/MSXDemultiplexer.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MSXDemultiplexer.cpp:62:80: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/MatrixIO.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.cpp:37:19: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Map.h:73:43: required from 'struct Eigen::internal::traits > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from 'struct Eigen::internal::accessors_level > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/ForwardDeclarations.h:108:75: required from 'class Eigen::Map >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.cpp:86:83: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base >, double, double, Eigen::DenseCoeffsBase >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase >, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:172:34: required from 'class Eigen::MapBase >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Map.h:104:79: required from 'class Eigen::Map >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/MatrixIO.cpp:86:83: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/DemuxDebugReader.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugReader.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugReader.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugReader.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugReader.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugReader.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugReader.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugReader.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugReader.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugReader.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/PrecursorMaskCodec.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp:74:90: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Matrix >, double, double, Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:49:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp:76:45: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp:83:10: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 1, -1, false>, double, double, Eigen::DenseCoeffsBase, 1, -1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, 1, -1, false>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:172:34: required from 'class Eigen::MapBase, 1, -1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: required from 'class Eigen::internal::BlockImpl_dense, 1, -1, false, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, 1, -1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp:83:14: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, 1, -1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, 1, -1, false> >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, 1, -1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, 1, -1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Block, 1, -1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:49:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Block, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:334:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Block, 1, -1, false>; Eigen::DenseBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Block, 1, -1, false>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.cpp:83:30: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/DemuxHelpers.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxHelpers.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxHelpers.hpp:29, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxHelpers.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxHelpers.hpp:29, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxHelpers.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxHelpers.hpp:29, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxHelpers.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxHelpers.hpp:29, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxHelpers.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/DemuxDebugWriter.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugWriter.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugWriter.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugWriter.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugWriter.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugWriter.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugWriter.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugWriter.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugWriter.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxDebugWriter.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/demux/DemuxSolver.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:55:36: required from 'class Eigen::NNLS >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:30:24: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:219:17: required from 'class Eigen::NNLS >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:30:24: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, true>, double, double, Eigen::DenseCoeffsBase, -1, 1, true>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, -1, 1, true>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:172:34: required from 'class Eigen::MapBase, -1, 1, true>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, true, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:37: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base >, double, double, Eigen::DenseCoeffsBase >, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:100:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:57:37: required from 'class Eigen::Transpose >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:103:24: required from 'Eigen::NNLS<_MatrixType>::NNLS(const MatrixType&, int, Eigen::NNLS<_MatrixType>::Scalar, Eigen::NNLS<_MatrixType>::MatrixAtAPtr) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Scalar = double; Eigen::NNLS<_MatrixType>::MatrixAtAPtr = boost::shared_ptr >]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:30:48: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, Eigen::Matrix, 5>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base >, Eigen::Matrix, 5>, double, double, Eigen::DenseCoeffsBase >, Eigen::Matrix, 5>, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, Eigen::Matrix, 5> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, Eigen::Matrix, 5> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:63:7: required from 'class Eigen::ProductBase >, Eigen::Matrix, 5>, Eigen::Transpose >, Eigen::Matrix >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixMatrix.h:380:7: required from 'class Eigen::GeneralProduct >, Eigen::Matrix, 5>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:103:27: required from 'Eigen::NNLS<_MatrixType>::NNLS(const MatrixType&, int, Eigen::NNLS<_MatrixType>::Scalar, Eigen::NNLS<_MatrixType>::MatrixAtAPtr) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Scalar = double; Eigen::NNLS<_MatrixType>::MatrixAtAPtr = boost::shared_ptr >]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:30:48: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base >, double, double, Eigen::DenseCoeffsBase >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:100:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:57:37: required from 'class Eigen::Transpose >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:327:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, Eigen::Matrix, 4>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base >, Eigen::Matrix, 4>, double, double, Eigen::DenseCoeffsBase >, Eigen::Matrix, 4>, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, Eigen::Matrix, 4> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, Eigen::Matrix, 4> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:63:7: required from 'class Eigen::ProductBase >, Eigen::Matrix, 4>, Eigen::Transpose >, Eigen::Matrix >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:327:7: required from 'class Eigen::GeneralProduct >, Eigen::Matrix, 4>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:327:25: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix, 4>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Matrix, 4>, double, double, Eigen::DenseCoeffsBase, Eigen::Matrix, 4>, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix, 4> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix, 4> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:63:7: required from 'class Eigen::ProductBase, Eigen::Matrix, 4>, Eigen::Matrix, Eigen::Matrix >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:327:7: required from 'class Eigen::GeneralProduct, Eigen::Matrix, 4>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:196:21: required from 'void Eigen::NNLS<_MatrixType>::_updateGradient() [with _MatrixType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:333:4: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::GeneralProduct, Eigen::Matrix, 4> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Matrix, const Eigen::GeneralProduct, Eigen::Matrix, 4> >, double, double, Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::GeneralProduct, Eigen::Matrix, 4> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix, const Eigen::GeneralProduct, Eigen::Matrix, 4> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::GeneralProduct, Eigen::Matrix, 4> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:164:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::GeneralProduct, Eigen::Matrix, 4>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:107:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::GeneralProduct, Eigen::Matrix, 4> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:196:14: required from 'void Eigen::NNLS<_MatrixType>::_updateGradient() [with _MatrixType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:333:4: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, 1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl, -1, 1, false, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/VectorBlock.h:57:47: required from 'class Eigen::VectorBlock, -1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:458:24: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Matrix, 1, false> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Matrix, 1, false> >, double, double, Eigen::DenseCoeffsBase, Eigen::Matrix, 1, false> >, 1>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ReturnByValue.h:50:34: required from 'class Eigen::ReturnByValue, Eigen::Matrix, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PermutationMatrix.h:569:8: required from 'struct Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:467:11: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Matrix >, double, double, Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:49:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:334:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:319:26: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, true>, -1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, true>, -1, 1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/VectorBlock.h:57:47: required from 'class Eigen::VectorBlock, -1, 1, true>, -1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, -1, true>, double, double, Eigen::DenseCoeffsBase, -1, -1, true>, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl, -1, -1, true, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, -1, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:300:17: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, 1, false>, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, -1, 1, false>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/VectorBlock.h:57:47: required from 'class Eigen::VectorBlock, -1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:301:17: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, -1, false>, double, double, Eigen::DenseCoeffsBase, -1, -1, false>, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, -1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:303:21: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/ForwardDeclarations.h:108:75: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:123:63: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 0, Eigen::Stride<0, 0> >, double, double, Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Map.h:104:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:123:63: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, true>, -1, 1, false>, -1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:124:82: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, true>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> >, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:100:37: required from 'class Eigen::TransposeImpl, -1, 1, true>, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:57:37: required from 'class Eigen::Transpose, -1, 1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:125:38: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:200:7: required from 'class Eigen::GeneralProduct, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:125:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1, 1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1, 1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, true>, -1, 1, false>, 1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, 1, 1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, 1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, 1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:126:21: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, double, double, Eigen::DenseCoeffsBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:92:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:59:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:127:25: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Block, -1, 1, true>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:92:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:59:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:128:29: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, double, double, Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:63:7: required from 'class Eigen::ProductBase, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:257:7: required from 'class Eigen::GeneralProduct, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:128:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, -1, 1, true>, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:175:109: required from 'Derived& Eigen::DenseBase::operator*=(const Scalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::DenseBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:119:11: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false> >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false> >, double, double, Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false> >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:223:77: required from 'Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false>; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:126:9: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:209:84: required from 'Derived& Eigen::MatrixBase::operator-=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > >; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>, 1, 1, false>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:127:18: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, true>, -1, 1, false>, -1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:74:64: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:45:18: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:284:52: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:92:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:59:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:90:22: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:45:18: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:284:52: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> > >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, true>, -1, 1, false> > >, double, double, Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false> > >, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:100:37: required from 'class Eigen::TransposeImpl, -1, 1, true>, -1, 1, false> >, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:57:37: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:598:60: required from 'const typename Eigen::ProductReturnType::Type Eigen::MatrixBase::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Derived = Eigen::Transpose, -1, 1, true>, -1, 1, false> >; typename Eigen::ProductReturnType::Type = Eigen::GeneralProduct, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:125:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, 1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Transpose, -1, 1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, 1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, -1, 1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, -1, 1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:164:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, 1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:107:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:598:60: required from 'const typename Eigen::ProductReturnType::Type Eigen::MatrixBase::operator*(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; Derived = Eigen::Transpose, -1, 1, true>, -1, 1, false> >; typename Eigen::ProductReturnType::Type = Eigen::GeneralProduct, -1, 1, true>, -1, 1, false> >, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, 3>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:125:41: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:92:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:59:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:76:71: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:45:18: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:284:52: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false>, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, -1, true>, -1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false>, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, -1, -1, true>, -1, 1, false>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, Eigen::Stride<0, 0> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1, Eigen::Stride<0, 0> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 1, Eigen::Stride<0, 0> >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 1, Eigen::Stride<0, 0> >, double, double, Eigen::DenseCoeffsBase, 1, Eigen::Stride<0, 0> >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:186:21: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/TriangularMatrix.h:342:37: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:305:18: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, double, double, Eigen::DenseCoeffsBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/NoAlias.h:74:28: required from 'ExpressionType& Eigen::NoAlias::operator-=(const Eigen::ProductBase&) [with ProductDerived = Eigen::GeneralProduct, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>; Lhs = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; ExpressionType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:128:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > >, double, double, Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:92:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:59:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:235:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/NoAlias.h:74:28: required from 'ExpressionType& Eigen::NoAlias::operator-=(const Eigen::ProductBase&) [with ProductDerived = Eigen::GeneralProduct, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>; Lhs = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; ExpressionType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:128:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:49:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:334:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:83:22: required from 'void Eigen::MatrixBase::makeHouseholder(EssentialPart&, Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) const [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1, 1, false>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:45:18: required from 'void Eigen::MatrixBase::makeHouseholderInPlace(Eigen::MatrixBase::Scalar&, Eigen::MatrixBase::RealScalar&) [with Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double; Eigen::MatrixBase::RealScalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:284:52: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, false>, -1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, -1, true>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> >, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:100:37: required from 'class Eigen::TransposeImpl, -1, -1, true>, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:57:37: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1, 1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1, 1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, false>, 1, 1, false>, double, double, Eigen::DenseCoeffsBase, -1, 1, false>, 1, 1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false>, 1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false>, 1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Block, -1, -1, true>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, true>, -1, 1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, -1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, -1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:92:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, -1, true>, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:59:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:128:29: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, double, double, Eigen::DenseCoeffsBase, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:63:7: required from 'class Eigen::ProductBase, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>, Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:257:7: required from 'class Eigen::GeneralProduct, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:128:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 0, Eigen::OuterStride<> >, double, double, Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, 0, Eigen::OuterStride<> >, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Map.h:104:79: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:186:21: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/TriangularMatrix.h:342:37: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:305:18: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 0, Eigen::Stride<0, 0> >, double, double, Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:186:21: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/TriangularMatrix.h:342:37: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:305:18: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 0, Eigen::OuterStride<> >, -1, 1, true>, double, double, Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:186:21: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/TriangularMatrix.h:342:37: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:305:18: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, double, double, Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:186:21: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/TriangularMatrix.h:342:37: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:305:18: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:92:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:59:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/TriangularSolverVector.h:117:64: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:186:21: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/TriangularMatrix.h:342:37: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:305:18: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:329, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'struct Eigen::internal::general_matrix_vector_product': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/TriangularSolverVector.h:125:95: required from 'static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:73:12: required from 'static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Side = 1; int Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:186:21: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/TriangularMatrix.h:342:37: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:305:18: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:47:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:48:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 48 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:49:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 49 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Block, -1, 1, false>, Eigen::CwiseNullaryOp, Eigen::Matrix > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, false>, 1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, false>, 1, 1, false> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, false>, 1, 1, false> >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, false>, 1, 1, false> >, double, double, Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, false>, 1, 1, false> >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, false>, 1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::Block, -1, 1, false>, 1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Block, -1, 1, false>, 1, 1, false>, Eigen::CwiseUnaryOp, const Eigen::Map, 0, Eigen::Stride<0, 0> > > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >, double, double, Eigen::DenseCoeffsBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Map, 0, Eigen::Stride<0, 0> >, Eigen::CwiseUnaryOp, const Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:186:21: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/TriangularMatrix.h:342:37: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:305:18: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:329, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, RhsScalar) [with Index = long int; LhsScalar = double; bool ConjugateLhs = false; RhsScalar = double; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/TriangularSolverVector.h:125:95: required from 'static void Eigen::internal::triangular_solve_vector::run(Index, const LhsScalar*, Index, RhsScalar*) [with LhsScalar = double; RhsScalar = double; Index = long int; int Mode = 2; bool Conjugate = false]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:73:12: required from 'static void Eigen::internal::triangular_solver_selector::run(const Lhs&, Rhs&) [with Lhs = const Eigen::Block, -1, -1, false>; Rhs = Eigen::Block, -1, 1, false>; int Side = 1; int Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SolveTriangular.h:186:21: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with int Side = 1; OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/TriangularMatrix.h:342:37: required from 'void Eigen::TriangularView::solveInPlace(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Block, -1, 1, false>; _MatrixType = const Eigen::Block, -1, -1, false>; unsigned int _Mode = 2]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:305:18: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:80:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 80 | conj_helper pcj; | ^~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:80:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 1, 1, false>, double, double, Eigen::DenseCoeffsBase, 1, 1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Assign.h:585:71: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::ReturnByValue&) [with OtherDerived = Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:421:29: required from 'Derived& Eigen::PlainObjectBase::operator=(const Eigen::ReturnByValue&) [with OtherDerived = Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:190:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::ReturnByValue&) [with OtherDerived = Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:467:6: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, 1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false>, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 1, 1, false>, double, double, Eigen::DenseCoeffsBase, 1, 1, false>, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, 1, 1, false>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Assign.h:585:71: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::ReturnByValue&) [with OtherDerived = Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:421:29: required from 'Derived& Eigen::PlainObjectBase::operator=(const Eigen::ReturnByValue&) [with OtherDerived = Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:190:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::ReturnByValue&) [with OtherDerived = Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:467:6: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Map, 1, Eigen::Stride<0, 0> > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Map, 1, Eigen::Stride<0, 0> > >, double, double, Eigen::DenseCoeffsBase, const Eigen::Map, 1, Eigen::Stride<0, 0> > >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Map, 1, Eigen::Stride<0, 0> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Map, 1, Eigen::Stride<0, 0> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:92:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Map, 1, Eigen::Stride<0, 0> >, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:59:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Map, 1, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:475:29: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:127:23: required from 'Eigen::ProductBase::operator const PlainObject&() const [with Derived = Eigen::GeneralProduct, Eigen::Matrix, 4>; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; Eigen::ProductBase::PlainObject = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:127:22: required from 'Eigen::CwiseBinaryOp::CwiseBinaryOp(const Lhs&, const Rhs&, const BinaryOp&) [with BinaryOp = Eigen::internal::scalar_difference_op; Lhs = const Eigen::Matrix; Rhs = const Eigen::GeneralProduct, Eigen::Matrix, 4>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/../plugins/CommonCwiseBinaryOps.h:19:1: required from 'const Eigen::CwiseBinaryOp::Scalar>, const Derived, const OtherDerived> Eigen::MatrixBase::operator-(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::GeneralProduct, Eigen::Matrix, 4>; Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:196:14: required from 'void Eigen::NNLS<_MatrixType>::_updateGradient() [with _MatrixType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:333:4: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > > >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > > >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > > >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > > >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> > > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/NoAlias.h:74:28: required from 'ExpressionType& Eigen::NoAlias::operator-=(const Eigen::ProductBase&) [with ProductDerived = Eigen::GeneralProduct, const Eigen::Block, -1, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 2>; Lhs = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; ExpressionType = Eigen::Block, -1, 1, true>, -1, 1, false>, -1, 1, false>; StorageBase = Eigen::MatrixBase]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/Householder.h:128:22: required from 'void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Eigen::MatrixBase::Scalar*) [with EssentialPart = Eigen::VectorBlock, -1, 1, true>, -1>; Derived = Eigen::Block, -1, 1, true>, -1, 1, false>; Eigen::MatrixBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:279:61: required from 'void Eigen::internal::nnls_householder_qr_inplace_update(MatrixQR&, HCoeffs&, const VectorQR&, typename MatrixQR::Index, typename MatrixQR::Scalar*) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; VectorQR = Eigen::Block, -1, 1, true>; typename MatrixQR::Index = long int; typename MatrixQR::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:429:47: required from 'void Eigen::NNLS<_MatrixType>::_addToP(Eigen::NNLS<_MatrixType>::Index) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:340:22: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:566:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> > >, 2>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, -1, true>, -1, 1, false> > >, double, double, Eigen::DenseCoeffsBase, -1, -1, true>, -1, 1, false> > >, 2>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:100:37: required from 'class Eigen::TransposeImpl, -1, -1, true>, -1, 1, false> >, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Transpose.h:57:37: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, double, double, Eigen::DenseCoeffsBase, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:164:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false>, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:107:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Transpose, -1, -1, true>, -1, 1, false> > >, const Eigen::Block, -1, 1, false>, -1, 1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:211:58: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, 1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false> >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 1, 1, false> >, double, double, Eigen::DenseCoeffsBase, 1, 1, false> >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Swap.h:27:41: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Assign.h:585:71: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::ReturnByValue&) [with OtherDerived = Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:421:29: required from 'Derived& Eigen::PlainObjectBase::operator=(const Eigen::ReturnByValue&) [with OtherDerived = Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:190:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::ReturnByValue&) [with OtherDerived = Eigen::internal::permut_matrix_product_retval, Eigen::Matrix, 1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:467:6: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix, Eigen::CwiseUnaryOp, const Eigen::Map, 1, Eigen::Stride<0, 0> > > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Matrix, Eigen::CwiseUnaryOp, const Eigen::Map, 1, Eigen::Stride<0, 0> > > >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Matrix, Eigen::CwiseUnaryOp, const Eigen::Map, 1, Eigen::Stride<0, 0> > > >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Matrix, Eigen::CwiseUnaryOp, const Eigen::Map, 1, Eigen::Stride<0, 0> > > >, double, double, Eigen::DenseCoeffsBase, Eigen::Matrix, Eigen::CwiseUnaryOp, const Eigen::Map, 1, Eigen::Stride<0, 0> > > >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix, Eigen::CwiseUnaryOp, const Eigen::Map, 1, Eigen::Stride<0, 0> > > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix, Eigen::CwiseUnaryOp, const Eigen::Map, 1, Eigen::Stride<0, 0> > > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:127:23: required from 'Eigen::ProductBase::operator const PlainObject&() const [with Derived = Eigen::GeneralProduct, Eigen::Matrix, 4>; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; Eigen::ProductBase::PlainObject = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:127:22: required from 'Eigen::CwiseBinaryOp::CwiseBinaryOp(const Lhs&, const Rhs&, const BinaryOp&) [with BinaryOp = Eigen::internal::scalar_difference_op; Lhs = const Eigen::Matrix; Rhs = const Eigen::GeneralProduct, Eigen::Matrix, 4>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/../plugins/CommonCwiseBinaryOps.h:19:1: required from 'const Eigen::CwiseBinaryOp::Scalar>, const Derived, const OtherDerived> Eigen::MatrixBase::operator-(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::GeneralProduct, Eigen::Matrix, 4>; Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:196:14: required from 'void Eigen::NNLS<_MatrixType>::_updateGradient() [with _MatrixType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:333:4: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, -1, 1, true>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, -1, 1, true>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, -1, 1, true>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, false>, -1, 1, false>, -1, 1, true>, double, double, Eigen::DenseCoeffsBase, -1, 1, false>, -1, 1, false>, -1, 1, true>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false>, -1, 1, false>, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false>, -1, 1, false>, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > >, double, double, Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:92:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> >, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseUnaryOp.h:59:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:235:45: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Map, 1, Eigen::Stride<0, 0> > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Map, 1, Eigen::Stride<0, 0> > >, double, double, Eigen::DenseCoeffsBase, Eigen::Map, 1, Eigen::Stride<0, 0> > >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Map, 1, Eigen::Stride<0, 0> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Map, 1, Eigen::Stride<0, 0> > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:49:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Map, 1, Eigen::Stride<0, 0> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:334:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 1, Eigen::Stride<0, 0> >; Eigen::DenseBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:501:10: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:127:23: required from 'Eigen::ProductBase::operator const PlainObject&() const [with Derived = Eigen::GeneralProduct, Eigen::Matrix, 4>; Lhs = Eigen::Matrix; Rhs = Eigen::Matrix; Eigen::ProductBase::PlainObject = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:127:22: required from 'Eigen::CwiseBinaryOp::CwiseBinaryOp(const Lhs&, const Rhs&, const BinaryOp&) [with BinaryOp = Eigen::internal::scalar_difference_op; Lhs = const Eigen::Matrix; Rhs = const Eigen::GeneralProduct, Eigen::Matrix, 4>]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/../plugins/CommonCwiseBinaryOps.h:19:1: required from 'const Eigen::CwiseBinaryOp::Scalar>, const Derived, const OtherDerived> Eigen::MatrixBase::operator-(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::GeneralProduct, Eigen::Matrix, 4>; Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:196:14: required from 'void Eigen::NNLS<_MatrixType>::_updateGradient() [with _MatrixType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:333:4: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > > >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > > >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > > >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Block, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > > >, double, double, Eigen::DenseCoeffsBase, Eigen::Block, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > > >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Block, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Block, -1, 1, false>, -1, 1, false>, -1, 1, true>, Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Block, -1, -1, true>, -1, 1, false> > > > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Householder/HouseholderSequence.h:303:25: required from 'void Eigen::HouseholderSequence::applyThisOnTheLeft(Dest&) const [with Dest = Eigen::Matrix; VectorsType = Eigen::Block, -1, -1, true>; CoeffsType = Eigen::VectorBlock, -1>; int Side = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:558:37: required from 'void Eigen::MatrixBase::applyOnTheLeft(const Eigen::EigenBase&) [with OtherDerived = Eigen::HouseholderSequence, -1, -1, true>, Eigen::VectorBlock, -1>, 1>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:299:20: required from 'void Eigen::internal::nnls_householder_qr_inplace_solve(const MatrixQR&, const HCoeffs&, Dest&, typename MatrixQR::Index&) [with MatrixQR = Eigen::Matrix; HCoeffs = Eigen::Matrix; Dest = Eigen::Matrix; typename MatrixQR::Index = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:457:46: required from 'void Eigen::NNLS<_MatrixType>::_solveLS_P(const ColVectorType&) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:353:5: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Matrix >, double, double, Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:49:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:334:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseNullaryOp.h:501:10: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:365:48: required from 'Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:635:124: required from 'void Eigen::PlainObjectBase::_set_selector(const OtherDerived&, const Eigen::internal::true_type&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:630:20: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:172:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:103:11: required from 'Eigen::NNLS<_MatrixType>::NNLS(const MatrixType&, int, Eigen::NNLS<_MatrixType>::Scalar, Eigen::NNLS<_MatrixType>::MatrixAtAPtr) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Scalar = double; Eigen::NNLS<_MatrixType>::MatrixAtAPtr = boost::shared_ptr >]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:30:48: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:326, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of 'class Eigen::internal::gebp_traits': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixMatrix.h:341:36: required from 'Eigen::internal::gemm_blocking_space::gemm_blocking_space(Eigen::DenseIndex, Eigen::DenseIndex, Eigen::DenseIndex) [with int StorageOrder = 0; _LhsScalar = double; _RhsScalar = double; int MaxRows = -1; int MaxCols = -1; int MaxDepth = -1; int KcFactor = 1; Eigen::DenseIndex = long int]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixMatrix.h:425:20: required from 'void Eigen::GeneralProduct::scaleAndAddTo(Dest&, const Scalar&) const [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::GeneralProduct::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:118:94: required from 'void Eigen::ProductBase::scaleAndAddTo(Dest&, const Scalar&) const [with Dest = Eigen::Matrix; Derived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::ProductBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:109:71: required from 'void Eigen::ProductBase::evalTo(Dest&) const [with Dest = Eigen::Matrix; Derived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:284:25: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::ProductBase&) [with ProductDerived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:414:30: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:365:48: required from 'Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:635:124: required from 'void Eigen::PlainObjectBase::_set_selector(const OtherDerived&, const Eigen::internal::true_type&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:630:20: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:172:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 5>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:103:11: required from 'Eigen::NNLS<_MatrixType>::NNLS(const MatrixType&, int, Eigen::NNLS<_MatrixType>::Scalar, Eigen::NNLS<_MatrixType>::MatrixAtAPtr) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::Scalar = double; Eigen::NNLS<_MatrixType>::MatrixAtAPtr = boost::shared_ptr >]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:30:48: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralBlockPanelKernel.h:179:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 179 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralBlockPanelKernel.h:180:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 180 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralBlockPanelKernel.h:181:73: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 181 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:329, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'struct Eigen::internal::general_matrix_vector_product': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:524:110: required from 'static void Eigen::internal::gemv_selector<2, 1, true>::run(const ProductType&, Dest&, const typename ProductType::Scalar&) [with ProductType = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Dest = Eigen::Matrix; typename ProductType::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:349:92: required from 'void Eigen::GeneralProduct::scaleAndAddTo(Dest&, const Scalar&) const [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::GeneralProduct::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:118:94: required from 'void Eigen::ProductBase::scaleAndAddTo(Dest&, const Scalar&) const [with Dest = Eigen::Matrix; Derived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::ProductBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:109:71: required from 'void Eigen::ProductBase::evalTo(Dest&) const [with Dest = Eigen::Matrix; Derived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:284:25: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::ProductBase&) [with ProductDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:414:30: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:365:48: required from 'Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:635:124: required from 'void Eigen::PlainObjectBase::_set_selector(const OtherDerived&, const Eigen::internal::true_type&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:630:20: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:172:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:327:8: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:310:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 310 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:311:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 311 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:312:71: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 312 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, -1, 1, true>, double, double, Eigen::DenseCoeffsBase, -1, 1, true>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:365:48: required from 'Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:635:124: required from 'void Eigen::PlainObjectBase::_set_selector(const OtherDerived&, const Eigen::internal::true_type&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:630:20: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:172:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:327:8: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:329, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:22: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of 'static void Eigen::internal::general_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, Eigen::internal::general_matrix_vector_product::ResScalar*, Index, Eigen::internal::general_matrix_vector_product::ResScalar) [with Index = long int; LhsScalar = double; bool ConjugateLhs = false; RhsScalar = double; bool ConjugateRhs = false; int Version = 0; Eigen::internal::general_matrix_vector_product::ResScalar = double]': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:524:110: required from 'static void Eigen::internal::gemv_selector<2, 1, true>::run(const ProductType&, Dest&, const typename ProductType::Scalar&) [with ProductType = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Dest = Eigen::Matrix; typename ProductType::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/GeneralProduct.h:349:92: required from 'void Eigen::GeneralProduct::scaleAndAddTo(Dest&, const Scalar&) const [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::GeneralProduct::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:118:94: required from 'void Eigen::ProductBase::scaleAndAddTo(Dest&, const Scalar&) const [with Dest = Eigen::Matrix; Derived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Eigen::ProductBase::Scalar = double]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:109:71: required from 'void Eigen::ProductBase::evalTo(Dest&) const [with Dest = Eigen::Matrix; Derived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/ProductBase.h:284:25: required from 'Derived& Eigen::MatrixBase::lazyAssign(const Eigen::ProductBase&) [with ProductDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:414:30: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:365:48: required from 'Eigen::DenseBase::EvalReturnType Eigen::DenseBase::eval() const [with Derived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Eigen::DenseBase::EvalReturnType = const Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:635:124: required from 'void Eigen::PlainObjectBase::_set_selector(const OtherDerived&, const Eigen::internal::true_type&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:630:20: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:172:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::GeneralProduct >, Eigen::Matrix, 4>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/nnls.h:327:8: required from 'bool Eigen::NNLS<_MatrixType>::solve(const ColVectorType&, Eigen::NNLS<_MatrixType>::Heuristic) [with _MatrixType = Eigen::Matrix; Eigen::NNLS<_MatrixType>::ColVectorType = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxSolver.cpp:35:25: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:344:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 344 | conj_helper pcj; | ^~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/products/GeneralMatrixVector.h:344:62: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/libraries/CSpline touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/libraries/CSpline/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/libraries/CSpline/CSpline.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline/CSpline.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_Demux.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:24: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:29:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 29 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:30:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 30 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:31:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 31 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:101:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 101 | template<> struct unpacket_traits { typedef float type; enum {size=4}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:102:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 102 | template<> struct unpacket_traits { typedef double type; enum {size=2}; }; | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:103:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 103 | template<> struct unpacket_traits { typedef int type; enum {size=4}; }; | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:263, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:24: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:550:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 550 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:573:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 573 | struct palign_impl | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/PacketMath.h:596:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 596 | struct palign_impl | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:265, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:24: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:211:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 211 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:220:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 220 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:407:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 407 | template<> struct conj_helper | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/arch/SSE/Complex.h:416:63: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 416 | template<> struct conj_helper | ^ In file included from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Core:277, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Dense:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/Eigen:1, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/DemuxTypes.hpp:24, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/IPrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/PrecursorMaskCodec.hpp:23, from /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:24: /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, float, float, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.hpp:84:45: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/demux/OverlapDemultiplexer.hpp:85:45: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, -1, false>, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 1, -1, false>, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, 1, -1, false>, double, double, Eigen::DenseCoeffsBase, 1, -1, false>, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:27:34: required from 'class Eigen::MapBase, 1, -1, false>, 0>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MapBase.h:172:34: required from 'class Eigen::MapBase, 1, -1, false>, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:314:7: required from 'class Eigen::internal::BlockImpl_dense, 1, -1, false, true>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:149:7: required from 'class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, 1, -1, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:471:47: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, double, double, Eigen::DenseCoeffsBase, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:471:78: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix, Eigen::Block, 1, -1, false> >, 0>': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Matrix, Eigen::Block, 1, -1, false> >, 1>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase, Eigen::Matrix, Eigen::Block, 1, -1, false> >, 3>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base, Eigen::Matrix, Eigen::Block, 1, -1, false> >, double, double, Eigen::DenseCoeffsBase, Eigen::Matrix, Eigen::Block, 1, -1, false> >, 3>, false>' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix, Eigen::Block, 1, -1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix, Eigen::Block, 1, -1, false> > >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/SelfCwiseBinaryOp.h:45:63: required from 'class Eigen::SelfCwiseBinaryOp, Eigen::Matrix, Eigen::Block, 1, -1, false> >' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/CwiseBinaryOp.h:223:77: required from 'Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]' /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:474:72: required from here /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp: In static member function 'static const string& pwiz::analysis::SpectrumList_Demux::Params::optimizationToString(pwiz::analysis::SpectrumList_Demux::Params::Optimization)': /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:199:96: warning: function may return address of local variable [-Wreturn-local-addr] 199 | return enumToString(opt, kOptimizationStrings); | ^ /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Demux.cpp:199:70: note: declared here 199 | return enumToString(opt, kOptimizationStrings); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_ChargeStateCalculator.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumListFactory.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumListFactory.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_Filter.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_Filter.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_MetadataFixer.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_MZWindow.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_MZRefiner.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_LockmassRefiner.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_PeakFilter.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_PeakPicker.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRecalculator.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_PrecursorRefine.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_TitleMaker.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_ZeroSamplesFilter.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/ThresholdFilter.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/ThresholdFilter.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_ScanSummer.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/spectrum_processing/SpectrumList_ChargeFromIsotope.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz_aux/msrc/utility/vendor_api/thermo touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz_aux/msrc/utility/vendor_api/thermo/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz_aux/msrc/utility/vendor_api/thermo/ScanFilter.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz_aux/msrc/utility/vendor_api/thermo/ScanFilter.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/common touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/common/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/common/cv.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/common/cv.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/common/CVTranslator.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/common/CVTranslator.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/common/diff_std.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/common/diff_std.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/common/obo.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/common/obo.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/common/ParamTypes.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/common/ParamTypes.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/DefaultReaderList.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/identdata/DefaultReaderList.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src 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-I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/IO.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/identdata/IO.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/Reader.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/identdata/Reader.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/References.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/identdata/References.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/misc touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/misc/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/misc/FrequencyData.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/misc/FrequencyData.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/misc/PeakData.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/misc/PeakData.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/SpectrumWorkerThreads.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/SpectrumWorkerThreads.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/BinaryDataEncoder.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/BinaryDataEncoder.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o 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/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/Reader.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/Serializer_MGF.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/Serializer_MGF.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/Serializer_MSn.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/Serializer_MSn.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/Serializer_mzML.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/Serializer_mzML.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/SpectrumInfo.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/SpectrumInfo.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/SpectrumList_BTDX.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/SpectrumList_BTDX.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/SpectrumListCache.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/SpectrumListCache.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/SpectrumList_MGF.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/SpectrumList_MGF.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/SpectrumList_MSn.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/SpectrumList_MSn.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/SpectrumList_mzML.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/SpectrumList_mzML.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/SpectrumList_mzXML.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/SpectrumList_mzXML.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome/AminoAcid.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/proteome/AminoAcid.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome/DefaultReaderList.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/proteome/DefaultReaderList.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome/Diff.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/proteome/Diff.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome/Reader.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/proteome/Reader.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/tradata touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/tradata/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/tradata/DefaultReaderList.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/tradata/DefaultReaderList.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/tradata/Diff.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/tradata/Diff.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/tradata/IO.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/tradata/IO.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/tradata/Reader.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/tradata/Reader.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/tradata/References.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/tradata/References.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ABI touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ABI/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ABI/Reader_ABI.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/ABI/Reader_ABI.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/ABI/Reader_ABI_Detail.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/ABI/SpectrumList_ABI.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ABI/T2D touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ABI/T2D/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/ABI/T2D/Reader_ABI_T2D.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/ABI/T2D/SpectrumList_ABI_T2D.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Agilent touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Agilent/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Agilent/SpectrumList_Agilent.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Bruker touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Bruker/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Bruker/Reader_Bruker.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Bruker/Reader_Bruker.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Bruker/Reader_Bruker_Detail.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Bruker/SpectrumList_Bruker.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/ExtendedReaderList.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/ExtendedReaderList.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Shimadzu touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Shimadzu/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Shimadzu/Reader_Shimadzu.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Shimadzu/ChromatogramList_Shimadzu.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Thermo touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Thermo/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Thermo/ChromatogramList_Thermo.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Thermo/Reader_Thermo.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Thermo/Reader_Thermo.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Thermo/Reader_Thermo_Detail.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Thermo/SpectrumList_Thermo.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Waters touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Waters/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Waters/Reader_Waters.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Waters/Reader_Waters.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Waters/SpectrumList_Waters.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/Waters/ChromatogramList_Waters.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/UIMF touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/UIMF/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/UIMF/Reader_UIMF.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/UIMF/Reader_UIMF.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/UNIFI touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/UNIFI/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/UNIFI/Reader_UNIFI.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/vendor_readers/UNIFI/SpectrumList_UNIFI.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/chemistry touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/chemistry/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/chemistry/Chemistry.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/chemistry/Chemistry.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/chemistry/ChemistryData.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/chemistry/ChemistryData.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/chemistry/IsotopeCalculator.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/chemistry/IsotopeCalculator.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/chemistry/IsotopeEnvelopeEstimator.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/chemistry/IsotopeTable.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/chemistry/IsotopeTable.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen 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-Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/math/Parabola.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/math/Parabola.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/minimxml touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/minimxml/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/minimxml/XMLWriter.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/minimxml/XMLWriter.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/misc touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/misc/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/misc/Filesystem.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/misc/Filesystem.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/misc/IntegerSet.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/misc/IntegerSet.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/misc/IterationListener.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/misc/IterationListener.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/misc/random_access_compressed_ifstream.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/misc/random_access_compressed_ifstream.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/misc/SHA1Calculator.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/misc/SHA1Calculator.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/utility/misc/SHA1.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/utility/misc/SHA1.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/Version.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/Version.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/analysis/Version.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/analysis/Version.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/Version.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/identdata/Version.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/tradata/Version.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/tradata/Version.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome/Version.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/proteome/Version.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/msdata/Version.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/msdata/Version.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/common/Unimod.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/common/Unimod.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/IdentData.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/identdata/IdentData.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/IdentDataFile.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/identdata/IdentDataFile.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/MascotReader.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/identdata/MascotReader.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/Serializer_mzid.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz/data/identdata/Serializer_mzid.cpp g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 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/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/MascotReader.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/Serializer_mzid.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/Serializer_pepXML.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/identdata/Serializer_protXML.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome/Digestion.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome/Modification.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz/data/proteome/Peptide.o ar: creating /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpwiz.a mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/ProteoWizard touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/ProteoWizard/.d cp /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/LICENSE /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lic/ProteoWizard/LICENSE mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz_tools/commandline touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz_tools/commandline/.d g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen 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-I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz_tools/commandline/idconvert.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz_tools/commandline/idconvert.cpp g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/idconvert /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz_tools/commandline/idconvert.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpwiz.a \ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib \ -lboost_system -lboost_program_options \ -lboost_filesystem -lboost_iostreams -lboost_regex -lboost_thread -lboost_chrono \ -lm -lrt -lz -lpthread g++ -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz_tools/commandline/qtofpeakpicker.o /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/pwiz_tools/commandline/qtofpeakpicker.cpp g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/qtofpeakpicker /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/pwiz/pwiz_tools/commandline/qtofpeakpicker.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpwiz.a \ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib \ -lboost_system -lboost_program_options \ -lboost_filesystem -lboost_iostreams -lboost_regex -lboost_thread -lboost_chrono \ -lm -lrt -lz -lpthread cp /builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-msi/pwiz-setup-3.0.1908-x86_64.msi /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/pwiz-setup-3.0.1908-x86_64.msi mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/adler32.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/adler32.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/compress.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/compress.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/crc32.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/crc32.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/deflate.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/deflate.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/inffast.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/inffast.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/inflate.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/inflate.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/infback.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/infback.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/inftrees.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/inftrees.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/trees.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/trees.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/uncompr.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/uncompr.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/zlib-1.2.8/zutil.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/zutil.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/expat-2.2.0/xmlparse.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/xmlparse.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/expat-2.2.0/xmlrole.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/xmlrole.o gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/expat-2.2.0/xmltok.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/xmltok.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/MSNumpress.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.MSNumpress.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzp_base64.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzp_base64_lite.o /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzp_base64.cpp: In function 'int mzParser::b64_decode_mio(char*, char*, size_t)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzp_base64.cpp:121:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 121 | int register a; | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzp_base64.cpp:122:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 122 | int register b; | ^ g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/BasicSpectrum.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.BasicSpectrum_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzParser.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzParser_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/RAMPface.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.RAMPface_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/saxhandler.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxhandler_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/saxmzmlhandler.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxmzmlhandler_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/saxmzxmlhandler.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxmzxmlhandler_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/Czran.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.Czran_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mz5handler.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mz5handler_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzpMz5Config.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzpMz5Config_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzpMz5Structs.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzpMz5Structs_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/BasicChromatogram.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.BasicChromatogram_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/PWIZface.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.PWIZface_lite.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/Spectrum.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/Spectrum.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/Spectrum.cpp:16: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/Spectrum.cpp: In member function 'MSToolkit::Spectrum& MSToolkit::Spectrum::copyMetaData(const MSToolkit::Spectrum&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/Spectrum.cpp:291:1: warning: no return statement in function returning non-void [-Wreturn-type] 291 | } | ^ g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/MSObject.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/MSObject.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSObject.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/MSObject.cpp:16: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/mzMLWriter.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzMLWriter.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSObject.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/mzMLWriter.h:21, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/mzMLWriter.cpp:16: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/pepXMLWriter.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/pepXMLWriter.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H -D_NOSQLITE /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/MSReader.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/MSReaderLite.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSReader.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/MSReader.cpp:16: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ ar rcs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmstoolkitlite.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/adler32.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/compress.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/crc32.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/deflate.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/inffast.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/inflate.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/infback.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/inftrees.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/trees.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/uncompr.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/zutil.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/xmlparse.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/xmlrole.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/xmltok.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.MSNumpress.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzp_base64_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.BasicSpectrum_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzParser_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.RAMPface_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxhandler_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxmzmlhandler_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxmzxmlhandler_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.Czran_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mz5handler_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzpMz5Config_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzpMz5Structs_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.BasicChromatogram_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.PWIZface_lite.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/Spectrum.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/MSObject.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzMLWriter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/pepXMLWriter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/MSReaderLite.o mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklor.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklor.o In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklor.h:25, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklor.cpp:43: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CAveragine.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CAveragine.o In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorVariant.h:22, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CAveragine.h:21, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CAveragine.cpp:19: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CPeriodicTable.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CPeriodicTable.o g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorVariant.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklorVariant.o In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorVariant.h:22, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorVariant.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorSetting.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklorSetting.o In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorSetting.h:25, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorSetting.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorParser.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklorParser.o In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorSetting.h:25, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorParser.h:24, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorParser.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CNoiseReduction.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CNoiseReduction.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSReader.h:19, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CNoiseReduction.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CNoiseReduction.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CSplitSpectrum.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CSplitSpectrum.o In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorSetting.h:25, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CSplitSpectrum.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CSplitSpectrum.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CMercury8.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CMercury8.o g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CSpecAnalyze.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CSpecAnalyze.o In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorVariant.h:22, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CAveragine.h:21, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CSpecAnalyze.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CSpecAnalyze.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/SpecAnalyzeSupport.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/SpecAnalyzeSupport.o In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklorVariant.h:22, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CAveragine.h:21, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/SpecAnalyzeSupport.h:21, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/SpecAnalyzeSupport.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/FFT-HK.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/FFT-HK.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSReader.h:19, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/FFT-HK.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/FFT-HK.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CModelLibrary.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CModelLibrary.o In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CModelLibrary.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CModelLibrary.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklor2.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklor2.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSObject.h:19, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklor2.h:26, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklor2.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/S2N.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/S2N.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/S2N.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/S2N.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/Smooth.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/Smooth.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/Smooth.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/Smooth.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/extern/Hardklor/FFT.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/FFT.o ar rcs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libhardklor.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklor.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CAveragine.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CPeriodicTable.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklorVariant.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklorSetting.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklorParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CNoiseReduction.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CSplitSpectrum.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CMercury8.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CSpecAnalyze.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/SpecAnalyzeSupport.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/FFT-HK.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CModelLibrary.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklor2.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/S2N.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/Smooth.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/FFT.o g++ -g -DDEBUG -static -D_NOSQLITE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/S2N.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/Smooth.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/FFT.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklor.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CAveragine.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CPeriodicTable.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklorVariant.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklorSetting.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklorParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CNoiseReduction.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CSplitSpectrum.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CMercury8.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CSpecAnalyze.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/SpecAnalyzeSupport.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/FFT-HK.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CModelLibrary.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Hardklor/CHardklor2.o /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorApp.cpp -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib -lmstoolkitlite -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/hardklor In file included from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorTypes.h:20, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/CHardklor.h:25, from /builddir/build/BUILD/release_6-0-0/extern/Hardklor/HardklorApp.cpp:20: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ cp -r /builddir/build/BUILD/release_6-0-0/extern/fastar /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fastar make -C /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fastar all make[1]: Entering directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fastar' g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o common/stravfwd.o common/stravfwd.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o aceftrie.o spare/ac/aceftrie.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o acgamma.o spare/ac/acgamma.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o acmfail.o spare/ac/acmfail.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o acmkmpfl.o spare/ac/acmkmpfl.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o acmopt.o spare/ac/acmopt.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o acout.o spare/ac/acout.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -o acgrep common/stravfwd.o aceftrie.o acgamma.o acmfail.o acmkmpfl.o acmopt.o acout.o spare/acgrep.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o common/stravrev.o common/stravrev.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o bmslfst1.o spare/bm/bmslfst1.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o bmslfst2.o spare/bm/bmslfst2.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o bmslnone.o spare/bm/bmslnone.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o bmslsfc.o spare/bm/bmslsfc.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -o bmgrep common/stravfwd.o common/stravrev.o bmslfst1.o bmslfst2.o bmslnone.o bmslsfc.o spare/bmgrep.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwchar.o spare/cw/cwchar.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwcharbm.o spare/cw/cwcharbm.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwcharrl.o spare/cw/cwcharrl.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwd1.o spare/cw/cwd1.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwd2.o spare/cw/cwd2.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwdopt.o spare/cw/cwdopt.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwout.o spare/cw/cwout.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwshnaiv.o spare/cw/cwshnaiv.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwshnla.o spare/cw/cwshnla.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwshnorm.o spare/cw/cwshnorm.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwshopt.o spare/cw/cwshopt.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwshrla.o spare/cw/cwshrla.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o cwshwbm.o spare/cw/cwshwbm.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -o cwgrep common/stravfwd.o common/stravrev.o cwchar.o cwcharbm.o cwcharrl.o cwd1.o cwd2.o cwdopt.o cwout.o cwshnaiv.o cwshnla.o cwshnorm.o cwshopt.o cwshrla.o cwshwbm.o spare/cwgrep.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o common/failidx.o common/failidx.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -c -o pm-kmp.o spare/kmp/pm-kmp.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -o kmpgrep common/stravfwd.o common/failidx.o pm-kmp.o spare/kmpgrep.cpp g++ -O3 -DINLINING -Wno-deprecated -Icommon -I./ -I../ -I../common -Ispare -Ispare/ac -Ispare/bf -Ispare/bm -Ispare/cw -Ispare/kmp -o test aceftrie.o acgamma.o acmfail.o acmkmpfl.o acmopt.o acout.o bmslfst1.o bmslfst2.o bmslnone.o bmslsfc.o cwchar.o cwcharbm.o cwcharrl.o cwd1.o cwd2.o cwdopt.o cwout.o cwshnaiv.o cwshnla.o cwshnorm.o cwshopt.o cwshrla.o cwshwbm.o pm-kmp.o common/stravfwd.o common/stravrev.o common/failidx.o spare/test.cpp make[1]: Leaving directory '/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fastar' ar -rs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libspareparts.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fastar/*.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/fastar/common/*.o ar: creating /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libspareparts.a ### Generating BUILD.mk for identifying the build cp /builddir/build/BUILD/release_6-0-0/VERSION.mk /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/BUILD.mk echo "BUILD_DATE = 202201041302" >> /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/BUILD.mk echo -n "BUILD_SVNVER = exported" >> /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/BUILD.mk ### Generating TPPVersion.o for TPP build g++ -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/TPPVersionInfo.o \ -DTPP_VERSIONINFO="\"TPP v6.0.0 OmegaBlock, Build 202201041302-exported (Linux-x86_64)\"" \ /builddir/build/BUILD/release_6-0-0/src/Common/TPPVersionInfo.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ModificationInfo touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ModificationInfo/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ModificationInfo/ModificationInfo.o /builddir/build/BUILD/release_6-0-0/src/Common/ModificationInfo/ModificationInfo.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ModifiedResidueMass touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ModifiedResidueMass/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ModifiedResidueMass/ModifiedResidueMass.o /builddir/build/BUILD/release_6-0-0/src/Common/ModifiedResidueMass/ModifiedResidueMass.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ResidueMass touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ResidueMass/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ResidueMass/ResidueMass.o /builddir/build/BUILD/release_6-0-0/src/Common/ResidueMass/ResidueMass.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/hooks_tpp.o /builddir/build/BUILD/release_6-0-0/src/Common/hooks_tpp.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/spectStrct.o /builddir/build/BUILD/release_6-0-0/src/Common/spectStrct.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -Wno-error=deprecated-declarations -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/tpp_tarball.o /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp: In constructor 'tpp_tarball::tpp_tarball(const char*, const char*)': /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:85:51: warning: 'int archive_write_set_compression_gzip(archive*)' is deprecated [-Wdeprecated-declarations] 85 | archive_write_set_compression_gzip(tarball_->tgz_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:33: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/archive.h:622:15: note: declared here 622 | __LA_DECL int archive_write_set_compression_gzip(struct archive *) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:87:44: warning: 'int archive_write_open_file(archive*, const char*)' is deprecated [-Wdeprecated-declarations] 87 | if (archive_write_open_file(tarball_->tgz_,tarfilename)) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:33: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/archive.h:689:15: note: declared here 689 | __LA_DECL int archive_write_open_file(struct archive *, const char *_file) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp: In member function 'void tpp_tarball::commit(const char*, const char*)': /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:132:29: warning: 'int archive_write_finish(archive*)' is deprecated [-Wdeprecated-declarations] 132 | archive_write_finish(tarball_->tgz_); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:33: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/archive.h:721:26: note: declared here 721 | __LA_DECL int archive_write_finish(struct archive *) __LA_DEPRECATED; | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp: In function 'FILE* read_dta_or_out_from_tgz_file(char*, char*, char*, int)': /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:302:43: warning: 'int archive_read_support_compression_all(archive*)' is deprecated [-Wdeprecated-declarations] 302 | archive_read_support_compression_all(a); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:33: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/archive.h:311:15: note: declared here 311 | __LA_DECL int archive_read_support_compression_all(struct archive *) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:306:34: warning: 'int archive_read_open_file(archive*, const char*, size_t)' is deprecated [-Wdeprecated-declarations] 306 | if (!archive_read_open_file(a,szTarFile,0xfff)) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:33: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/archive.h:440:15: note: declared here 440 | __LA_DECL int archive_read_open_file(struct archive *, | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:331:29: warning: 'int archive_read_finish(archive*)' is deprecated [-Wdeprecated-declarations] 331 | archive_read_finish(a); | ~~~~~~~~~~~~~~~~~~~^~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:33: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/archive.h:585:26: note: declared here 585 | __LA_DECL int archive_read_finish(struct archive *) __LA_DEPRECATED; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp: In destructor 'tarinfo::~tarinfo()': /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:352:26: warning: 'int archive_read_finish(archive*)' is deprecated [-Wdeprecated-declarations] 352 | archive_read_finish(m_a); | ~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:33: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/archive.h:585:26: note: declared here 585 | __LA_DECL int archive_read_finish(struct archive *) __LA_DEPRECATED; | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp: In function 'tarinfo* tarball_read_open(const char*, const char*)': /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:362:40: warning: 'int archive_read_support_compression_all(archive*)' is deprecated [-Wdeprecated-declarations] 362 | archive_read_support_compression_all(a); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:33: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/archive.h:311:15: note: declared here 311 | __LA_DECL int archive_read_support_compression_all(struct archive *) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:364:31: warning: 'int archive_read_open_file(archive*, const char*, size_t)' is deprecated [-Wdeprecated-declarations] 364 | if (!archive_read_open_file(a,tarfilename,0xfff)) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_tarball.cpp:33: /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include/archive.h:440:15: note: declared here 440 | __LA_DECL int archive_read_open_file(struct archive *, | ^~~~~~~~~~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -DTPP_HOME=\"/usr/local/tpp/\" -DTPP_DATADIR=\"/usr/local/tpp/data/\" -DTPP_BASEURL=\"tpp/\" -DTPP_DATAURL=\"tpp/data/\" -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/util.o /builddir/build/BUILD/release_6-0-0/src/Common/util.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/wglob.o /builddir/build/BUILD/release_6-0-0/src/Common/wglob.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/win32_system.o /builddir/build/BUILD/release_6-0-0/src/Common/win32_system.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzyme.o /builddir/build/BUILD/release_6-0-0/src/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzyme.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzymeFactory touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzymeFactory/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzymeFactory/ProteolyticEnzymeFactory.o /builddir/build/BUILD/release_6-0-0/src/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzymeFactory/ProteolyticEnzymeFactory.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/GradientProgram.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/GradientProgram.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/pICalculator.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.cpp:20: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:21, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.cpp:20: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.cpp:20: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:21, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.cpp:20: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/RTCalculator.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.cpp:38: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/time.h:25, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.cpp:38: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/time.h:25, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/RTCalculatorMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculatorMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculatorMain.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.h:35, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculatorMain.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculatorMain.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculator.h:35, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalculatorMain.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/RTCatalog.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:37, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.cpp:33: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:37, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.cpp:33: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/RTCatalogParser.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.h:45, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.h:45, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/RTCatalogParserMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParserMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.h:45, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParserMain.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParserMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalog.h:53, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParser.h:45, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParserMain.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCatalogParserMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchParams touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchParams/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchParams/SearchParams.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchParams/SearchParams.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/CometResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/CometResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/CruxResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/CruxResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/InspectResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/InspectResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/KojakResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/KojakResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/MagnumResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/MagnumResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/MorpheusResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/MorpheusResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/MascotResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/MascotResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/MSGFDBResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/MSGFDBResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/MSGFPLResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/MSGFPLResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/PPILOTResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/PPILOTResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/SIPROS_XCORR_Result.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SIPROS_XCORR_Result.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/SIPROS_MVH_Result.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SIPROS_MVH_Result.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/SIPROS_WDP_Result.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SIPROS_WDP_Result.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/MyrimatchResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/MyrimatchResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/OMSSAResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/OMSSAResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/PhenyxResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/PhenyxResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/SearchResult/ProbIDResult.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/ProbIDResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o 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g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatio_Fns/ASAPRatio_numFns.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatio_Fns/ASAPRatio_numFns.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatio_Fns/ASAPRatio_pepFns.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatio_Fns/ASAPRatio_pepFns.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatio_Fns/ASAPRatio_txtFns.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatio_Fns/ASAPRatio_txtFns.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideParser/ASAPRatioPeptideParserTagListComparator.o 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-I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/PvalueModel/PvalueModel.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/PvalueModel/PvalueModel.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/UniquePeptide touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/UniquePeptide/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/UniquePeptide/UniquePeptide.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/UniquePeptide/UniquePeptide.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Option.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Option.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Q3/Q3ProteinRatioParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Q3/Q3ProteinRatioParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.h:11, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.h:4, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.h:11, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.h:4, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.h:11, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.h:45, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.cpp:35: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.h:39, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.cpp:35: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.h:11, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.h:45, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.cpp:35: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.h:39, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.cpp:35: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressPeptideParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressPeptideParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressPeptideParser/XPressPeptideParserTagListComparator.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParserTagListComparator.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/RACI touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/RACI/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/RACI/chunky_streambuf.o /builddir/build/BUILD/release_6-0-0/src/Util/RACI/chunky_streambuf.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/RACI/RACI.o /builddir/build/BUILD/release_6-0-0/src/Util/RACI/RACI.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/RACI/random_access_compressed_streambuf.o /builddir/build/BUILD/release_6-0-0/src/Util/RACI/random_access_compressed_streambuf.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Comet touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Comet/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Comet/CometDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Comet/CometDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Crux touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Crux/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Crux/CruxDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Crux/CruxDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/DiscriminantFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscriminantFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/DiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Inspect touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Inspect/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Inspect/InspectDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Inspect/InspectFscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectFscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectFscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectFscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectFscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectFscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Inspect/InspectMQscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectMQscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectMQscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectMQscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectMQscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Inspect/InspectMQscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Kojak touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Kojak/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Kojak/KojakDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Kojak/KojakDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Magnum touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Magnum/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Magnum/MagnumDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Magnum/MagnumDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Morpheus touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Morpheus/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Morpheus/MorpheusScoreDF.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusScoreDF.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusScoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusScoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusScoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Morpheus/MorpheusScoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Mascot touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Mascot/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Mascot/MascotDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Mascot/MascotScoreParser.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Mascot/MascotScoreParser.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/PPILOT touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/PPILOT/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/PPILOT/PPILOT_Pscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOT_Pscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOT_Pscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOT_Pscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOT_Pscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOTDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/PPILOT/PPILOT_Pscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/SIPROS_Wdp.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Wdp.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Wdp.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Wdp.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Wdp.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_WDP_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Wdp.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/SIPROS_Mvh.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Mvh.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Mvh.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Mvh.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Mvh.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_MVH_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Mvh.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SIPROS/SIPROS_Xcorr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Xcorr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Xcorr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Xcorr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Xcorr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_XCORR_DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SIPROS/SIPROS_Xcorr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFDB touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFDB/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFDB/MSGFDB_MSGFscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDB_MSGFscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDB_MSGFscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDB_MSGFscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDB_MSGFscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDBDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFDB/MSGFDB_MSGFscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFPL touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFPL/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSGFPL/MSGFPL_MSGFscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPL_MSGFscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPL_MSGFscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPL_MSGFscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPL_MSGFscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPLDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSGFPL/MSGFPL_MSGFscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Myrimatch touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Myrimatch/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Myrimatch/MyrimatchMVHscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchMVHscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchMVHscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchMVHscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchMVHscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Myrimatch/MyrimatchMVHscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/OMSSA touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/OMSSA/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/OMSSA/OMSSAEscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAEscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAEscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAEscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAEscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAEscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/OMSSA/OMSSAPscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAPscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAPscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAPscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAPscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSADiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/OMSSA/OMSSAPscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Phenyx touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Phenyx/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Phenyx/PhenyxZscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxZscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxZscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxZscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxZscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Phenyx/PhenyxZscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/ProbID touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/ProbID/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ProbID/ProbIDDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Prospector touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Prospector/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Prospector/ProspectorDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Sequest touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Sequest/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Sequest/AbbrevSequestDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Sequest/AbbrevSequestDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Sequest/SequestDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Sequest/SequestDiscrimFunction.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SpectraST touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SpectraST/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/SpectraST/SpectraSTDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Tandem touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Tandem/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Tandem/TandemDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Tandem/TandemHRKscoreDF.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemHRKscoreDF.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemHRKscoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemHRKscoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemHRKscoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemHRKscoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Tandem/TandemKscoreDF.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemKscoreDF.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemKscoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemKscoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemKscoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemKscoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/Tandem/TandemNativeDF.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemNativeDF.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemNativeDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemNativeDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemNativeDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/Tandem/TandemNativeDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSFragger touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSFragger/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSFragger/MSFraggerHRKscoreDF.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerHRKscoreDF.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerHRKscoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerHRKscoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerHRKscoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerHRKscoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSFragger/MSFraggerKscoreDF.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerKscoreDF.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerKscoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerKscoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerKscoreDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerKscoreDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/MSFragger/MSFraggerNativeDF.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerNativeDF.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerNativeDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerNativeDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerNativeDF.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/MSFragger/MSFraggerNativeDF.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/ToftofAbbrevSequestDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/ToftofAbbrevSequestDiscrimFunction.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/YABSE touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/YABSE/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/YABSE/YABSEDiscrimFunction.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimFunction.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/DiscriminateFunction/YABSE/YABSELDAscore.o /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSELDAscore.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSELDAscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSELDAscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.h:7, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSELDAscore.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/string:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSEDiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/YABSE/YABSELDAscore.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/ContinuousDistribution.o /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/ContinuousDistribution.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/DiscreteDistribution.o /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/DiscreteDistribution.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/Distribution.o /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/Distribution.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/ExtremeValueDistribution.o /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/ExtremeValueDistribution.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/Fit.o /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/Fit.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/GammaDistribution.o /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/GammaDistribution.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/GaussianDistribution.o /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/GaussianDistribution.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/GeneralizedGaussianDistribution.o /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/GeneralizedGaussianDistribution.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Distribution/NonParametricDistribution.o /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/Distribution.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/ContinuousDistribution.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/Distribution.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/ContinuousDistribution.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/BoolModel.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/BoolModel.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/InterProphet.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.cpp:33: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.cpp:33: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/InterProphetParser.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.h:44, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.h:44, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/KDModel.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iosfwd:38, from /usr/include/c++/11/ios:38, from /usr/include/c++/11/ostream:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.cpp:33: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iosfwd:38, from /usr/include/c++/11/ios:38, from /usr/include/c++/11/ostream:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.cpp:33: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/SearchHit.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:39, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/SearchHit.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/AccurateMassDiffDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/MatchedIonsMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MatchedIonsMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MatchedIonsMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MatchedIonsMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MatchedIonsMixtureDistr.h:3, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MatchedIonsMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MatchedIonsMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MatchedIonsMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MatchedIonsMixtureDistr.h:3, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MatchedIonsMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLSecondScoreFractionMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/XLTopExpectMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLTopExpectMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLTopExpectMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLTopExpectMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLTopExpectMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLTopExpectMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLTopExpectMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLTopExpectMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLTopExpectMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLTopExpectMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/XLBottomExpectMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/ContinuousMultimixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ContinuousMultimixtureDistr.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ContinuousMultimixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ContinuousMultimixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DecayContinuousMultimixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/DiscreteMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/GlycMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/GlycMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/GlycMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/GlycMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/GlycMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/GlycMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/GlycMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/GlycMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/GlycMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/GlycMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/ICATMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/IsoMassDiffDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityPIMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityAccMassMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/KernelDensityRTMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/MixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.cpp:33: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.cpp:33: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.cpp:33: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.cpp: In member function 'virtual double MixtureDistr::get_AccMassMean(int)': /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.cpp:246:1: warning: no return statement in function returning non-void [-Wreturn-type] 246 | } | ^ /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.cpp: In member function 'virtual double MixtureDistr::get_AccMassStdev(int)': /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.cpp:250:1: warning: no return statement in function returning non-void [-Wreturn-type] 250 | } | ^ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/MixtureDistrFactory.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.cpp:34: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.cpp:34: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.cpp:34: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:5, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.cpp:34: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MzDifferenceDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/NMCMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/NTTMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NTTMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/PhosphoMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/PhosphoMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/PhosphoMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/PhosphoMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/PhosphoMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/PhosphoMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/PhosphoMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/PhosphoMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/PhosphoMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/PhosphoMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/pIMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/RTMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.cpp:2: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/RTMixtureDistr.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MassDifferenceDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetMassDiffDiscrMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/pIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.h:6, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/assert.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/VariableOffsetpIMixtureDistr.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureModel touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureModel/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureModel/MixtureModel.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.cpp: In member function 'double MixtureModel::get_AccMassMean(int)': /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.cpp:1945:1: warning: control reaches end of non-void function [-Wreturn-type] 1945 | } | ^ /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.cpp: In member function 'double MixtureModel::get_AccMassStdev(int)': /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.cpp:1949:1: warning: control reaches end of non-void function [-Wreturn-type] 1949 | } | ^ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureModel/OrderedResult.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/OrderedResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/MixtureModel/Spectrum.o /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/Spectrum.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PeptideProphet/PeptideProphetOptions touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PeptideProphet/PeptideProphetOptions/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PeptideProphet/PeptideProphetOptions/PeptideProphetOptions.o /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetOptions/PeptideProphetOptions.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PeptideProphet/PeptideProphetParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PeptideProphet/PeptideProphetParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.o /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.h:47, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.h:39, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.h:47, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.h:39, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PTMProphetParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PTMProphetParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PTMProphetParser/PTMProphetMain.o /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMain.cpp:31: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:33, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMain.cpp:31: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMain.cpp:31: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:33, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMain.cpp:31: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PTMProphetParser/PTMProphetMpx.o /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:33, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:33, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PTMProphetParser/PTMProphetParser.o /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:33, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetMpx.h:33, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/PTMProphetParser/PTMProphetParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Respect touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Respect/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Respect/RespectFilter.o /builddir/build/BUILD/release_6-0-0/src/Validation/Respect/RespectFilter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Respect/RespectMain.o /builddir/build/BUILD/release_6-0-0/src/Validation/Respect/RespectMain.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Respect/RespectParser.o /builddir/build/BUILD/release_6-0-0/src/Validation/Respect/RespectParser.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/mzParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/mzParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/mzParser/BasicChromatogram.o /builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser/BasicChromatogram.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/mzParser/BasicSpectrum.o /builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser/BasicSpectrum.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/mzParser/Czran.o /builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser/Czran.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB 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/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprStPeterQuantPeptide.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoProtXMLParser/CnprStPeterQuantPeptide.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/NeoProtXMLParser.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoProtXMLParser/NeoProtXMLParser.cpp ar -r /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libprotxml.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/ProtXMLParser/cpxIndPeptide.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/ProtXMLParser/cpxModInfo.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/ProtXMLParser/cpxPeptide.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/ProtXMLParser/cpxProtein.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/ProtXMLParser/cpxProteinGroup.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/ProtXMLParser/cpxStPeter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/ProtXMLParser/ProtXMLParser2.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprAnalysisResult.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprAnalysisSummary.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprAnnotation.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprDatasetDerivation.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprDecoyAnalysis.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprDecoyAnalysisSummary.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprErrorPoint.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprIndistinguishablePeptide.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprIndistinguishableProtein.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprModAminoacidMass.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprModificationInfo.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprNameValueType.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprNSPDistribution.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprNSPInformation.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprParameter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprPeptide.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprPeptideParentProtein.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprPoint.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprProgramDetails.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprProtein.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprProteinGroup.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprProteinProphetDetails.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprProteinSummary.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprProteinSummaryDataFilter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprProteinSummaryHeader.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprStPeterAnalysisSummary.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprStPeterQuant.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/CnprStPeterQuantPeptide.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoProtXMLParser/NeoProtXMLParser.o ar: creating /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libprotxml.a ar -r /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libraci.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/RACI/chunky_streambuf.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/RACI/RACI.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/RACI/random_access_compressed_streambuf.o ar: creating /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libraci.a ar -r /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libcommon.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgzstream.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libarchive.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/TPPVersionInfo.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ModificationInfo/ModificationInfo.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ModifiedResidueMass/ModifiedResidueMass.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/ResidueMass/ResidueMass.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/hooks_tpp.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/spectStrct.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/tpp_tarball.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/util.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/wglob.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/win32_system.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzyme.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzymeFactory/ProteolyticEnzymeFactory.o ar: creating /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libcommon.a ar -r /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libparser.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Parser/OuterTag.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Parser/Parser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Parser/Tag.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Parser/TagFilter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Parser/TagListComparator.o ar: creating /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libparser.a g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/crypt.o /builddir/build/BUILD/release_6-0-0/src/Common/crypt.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/get_random_number.o /builddir/build/BUILD/release_6-0-0/src/Common/get_random_number.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/kwset.o /builddir/build/BUILD/release_6-0-0/src/Common/kwset.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/obstack.o /builddir/build/BUILD/release_6-0-0/src/Common/obstack.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/EnzymeDigestionParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/EnzymeDigestionParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DXML_LARGE_SIZE -Wdeprecated -Wno-error -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/EnzymeDigestionParser/EnzymeDigestionParser.o /builddir/build/BUILD/release_6-0-0/src/Common/Enzyme/EnzymeDigestionParser/EnzymeDigestionParser.cpp In file included from /usr/include/c++/11/ext/hash_set:60, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Parser/Tag.h:70, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Parser/Parser.h:49, from /builddir/build/BUILD/release_6-0-0/src/Common/Enzyme/EnzymeDigestionParser/EnzymeDigestionParser.h:39, from /builddir/build/BUILD/release_6-0-0/src/Common/Enzyme/EnzymeDigestionParser/EnzymeDigestionParser.cpp:31: /usr/include/c++/11/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/EnzymeDigestionParser/EnzymeDigestionParserMain.o /builddir/build/BUILD/release_6-0-0/src/Common/Enzyme/EnzymeDigestionParser/EnzymeDigestionParserMain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/.d g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/crypt.o -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/crypt g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/EnzymeDigestionParser/EnzymeDigestionParserMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/EnzymeDigestionParser/EnzymeDigestionParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzyme.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/Enzyme/ProteolyticEnzyme/ProteolyticEnzymeFactory/ProteolyticEnzymeFactory.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lgzstream \ -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lfann -lgsl -lgslcblas -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/EnzymeDigestionParser g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/masscalc.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/masscalc.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/saxhandler.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/saxhandler.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/saxtandemhandler.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/saxtandemhandler.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Mascot2XML touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Mascot2XML/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.h:25, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cpp:30: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cpp:30: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.h:25, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cpp:30: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.cpp:30: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Mascot2XML/MascotConverterMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverterMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.h:25, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverterMain.cpp:32: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverterMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.h:25, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverterMain.cpp:32: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotConverterMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Mascot2XML/MascotModification.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Mascot2XML/MascotModification.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/CombineOut.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.h:23, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.h:23, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/CombineOutMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOutMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.h:23, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOutMain.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOutMain.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.h:23, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOutMain.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOut.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/CombineOutMain.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/Out2XML.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.h:57, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.h:57, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/Out2XMLMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XMLMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.h:57, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XMLMain.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XMLMain.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.h:57, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XMLMain.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XML.h:36, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Out2XMLMain.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/Sequest2XML.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Sequest2XML.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Sequest2XML.cpp:15: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Sequest2XML.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Sequest2XML.cpp:15: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sequest2XML/Sequest2XML.cpp:2: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Tandem2XML touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Tandem2XML/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Tandem2XML/Tandem2xml.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Tandem2XML/Tandem2xml.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Tandem2XML/TandemParamsParser.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Tandem2XML/TandemParamsParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Tandem2XML/TandemResultsParser.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Tandem2XML/TandemResultsParser.cpp /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Tandem2XML/TandemResultsParser.cpp: In function 'bool compare_mods(const TandemResultsParser::ModData&, const TandemResultsParser::ModData&)': /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Tandem2XML/TandemResultsParser.cpp:66:1: warning: control reaches end of non-void function [-Wreturn-type] 66 | } | ^ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/tpp2mzid touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/tpp2mzid/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/src/Parsers/PepXMLParser -DXML_LARGE_SIZE -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ProtXMLParser -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/tpp2mzid/tpp2mzid.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/tpp2mzid/tpp2mzid.cpp /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/tpp2mzid/tpp2mzid.cpp: In function 'CSpectrumIdentificationItem createSII()': /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/tpp2mzid/tpp2mzid.cpp:829:1: warning: no return statement in function returning non-void [-Wreturn-type] 829 | } | ^ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/AnalysisSummaryParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/AnalysisSummaryParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/AnalysisSummaryParser/AnalysisSummaryParser.o /builddir/build/BUILD/release_6-0-0/src/Parsers/AnalysisSummaryParser/AnalysisSummaryParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/AnalysisSummaryParser/AnalysisSummaryParserMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/AnalysisSummaryParser/AnalysisSummaryParserMain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/DatabaseParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/DatabaseParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/DatabaseParser/DatabaseParser.o /builddir/build/BUILD/release_6-0-0/src/Parsers/DatabaseParser/DatabaseParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/DatabaseParser/DatabaseParserMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/DatabaseParser/DatabaseParserMain.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/mzIMLTools/CBibliographicReference.o /builddir/build/BUILD/release_6-0-0/src/Parsers/mzIMLTools/CBibliographicReference.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/mzIMLTools/CMassTable.o /builddir/build/BUILD/release_6-0-0/src/Parsers/mzIMLTools/CMassTable.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/MzXML2Search touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/MzXML2Search/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/MzXML2Search/MzXML2Search.o /builddir/build/BUILD/release_6-0-0/src/Parsers/MzXML2Search/MzXML2Search.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/RefreshParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/RefreshParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/RefreshParser/RefreshParser.o /builddir/build/BUILD/release_6-0-0/src/Parsers/RefreshParser/RefreshParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/RefreshParser/RefreshParserMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/RefreshParser/RefreshParserMain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/PeptideMapper touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/PeptideMapper/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/PeptideMapper/PeptideMapper.o /builddir/build/BUILD/release_6-0-0/src/Parsers/PeptideMapper/PeptideMapper.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/PeptideMapper/PeptideMapperMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/PeptideMapper/PeptideMapperMain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/.d g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/AnalysisSummaryParser/AnalysisSummaryParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/AnalysisSummaryParser/AnalysisSummaryParserMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lgzstream -lpwiz -lfann -lgsl -lgslcblas -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/AnalysisSummaryParser.cgi g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/CombineOutMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/CombineOut.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/Out2XML.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/SequestOut.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lgsl -lgslcblas -lfann -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/CombineOut mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/CompactParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/CompactParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/CompactParser/CompactParserMain.o /builddir/build/BUILD/release_6-0-0/src/Parsers/CompactParser/CompactParserMain.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/CompactParser/CompactParser.o /builddir/build/BUILD/release_6-0-0/src/Parsers/CompactParser/CompactParser.cpp g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/CompactParser/CompactParserMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/CompactParser/CompactParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a \ -lgzstream -lpwiz \ -lgsl -lgslcblas -lfann -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/CompactParser g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/DatabaseParser/DatabaseParserMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/DatabaseParser/DatabaseParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lgzstream -lpwiz -lgsl -lgslcblas -lfann -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/DatabaseParser g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Mascot2XML/MascotConverterMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Mascot2XML/MascotConverter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Mascot2XML/MascotModification.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lpwiz \ -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lgzstream -larchive \ -lbz2 -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/Mascot2XML g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/MzXML2Search/MzXML2Search.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a \ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lpwiz \ -lgsl -lgslcblas -lfann -lgzstream -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/MzXML2Search g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/Out2XMLMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/Out2XML.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lgsl -lgslcblas -lfann -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/Out2XML g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/RefreshParser/RefreshParserMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/RefreshParser/RefreshParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/kwset.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/obstack.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lgzstream /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/RefreshParser g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/PeptideMapper/PeptideMapperMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/PeptideMapper/PeptideMapper.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/kwset.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Common/obstack.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/PeptideMapper g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/RTCalculatorMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lgsl -lgslcblas -lfann -lgzstream \ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/RTCalc mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/.d cp /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalc.coeff /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/RTCalc.coeff chmod 444 /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/RTCalc.coeff g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/RTCatalogParserMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/GradientProgram.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lgsl -lgslcblas -lfann -lgzstream \ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/RTCatalogParser g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sequest2XML/Sequest2XML.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/Sequest2XML mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sqt2XML touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sqt2XML/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sqt2XML/Sqt2XML.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sqt2XML/Sqt2XML.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sqt2XML/SimpleXMLWriter.o /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/Sqt2XML/SimpleXMLWriter.cpp g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib \ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sqt2XML/Sqt2XML.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Sqt2XML/SimpleXMLWriter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lgsl -lgslcblas -lfann \ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/Sqt2XML g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib \ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Tandem2XML/Tandem2xml.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Tandem2XML/TandemParamsParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/Tandem2XML/TandemResultsParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/masscalc.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/saxtandemhandler.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lgsl -lgslcblas -lfann -lpwiz \ -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/Tandem2XML g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/Algorithm2XML/tpp2mzid/tpp2mzid.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpepxml.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libprotxml.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzimltools.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libpepxml.a -lexpat /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libprotxml.a -lexpat /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzimltools.a -lexpat -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/tpp2mzid mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplay2Main.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplay2Main.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.h:52, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplay2Main.cpp:44: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cstdlib:41, from /usr/include/c++/11/stdlib.h:36, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplay2Main.cpp:35: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.h:52, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplay2Main.cpp:44: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cstdlib:41, from /usr/include/c++/11/stdlib.h:36, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplay2Main.cpp:35: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplayParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplayParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.h:52, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.cpp:31: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.h:35, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.cpp:31: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.h:52, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.cpp:31: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.h:35, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.cpp:31: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/ASAPRatioPeptideCGIDisplayParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/ASAPRatioPeptideCGIDisplayParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/ASAPRatioPeptideCGIDisplayParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/ASAPRatioPeptideCGIDisplayParserMain.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/ASAPRatioPeptideUpdateParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/ASAPRatioPeptideUpdateParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideParser/ASAPRatioPeptideParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPeptideParser/ASAPRatioPeptideParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideParser/ASAPRatioPeptideParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPeptideParser/ASAPRatioPeptideParserMain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPProteinRatio.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPProteinRatio.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPRatioGroupPeptideParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPRatioGroupPeptideParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPRatioMSMSSeqData.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPRatioMSMSSeqData.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPRatioProteinRatioParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPRatioProteinRatioParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPRatioProteinRatioParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioProteinRatioParser/ASAPRatioProteinRatioParserMain.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPvalueParser/ASAPRatioPvalueParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPvalueParser/ASAPRatioPvalueParser.cpp /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPvalueParser/ASAPRatioPvalueParser.cpp: In member function 'char* ASAPRatioPvalueParser::getModelFile(const char*)': /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPvalueParser/ASAPRatioPvalueParser.cpp:476:14: warning: 'char* strncat(char*, const char*, size_t)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 476 | strncat(output, xmlfile, strlen(xmlfile)-strlen(result)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPvalueParser/ASAPRatioPvalueParser.cpp:476:38: note: length computed here 476 | strncat(output, xmlfile, strlen(xmlfile)-strlen(result)); | ~~~~~~^~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPvalueParser/ASAPRatioPvalueParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/ASAPRatio/ASAPRatioPvalueParser/ASAPRatioPvalueParserMain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/SPACEPro touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/SPACEPro/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/SPACEPro/SPACEPro.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/SPACEPro/SPACEPro.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/SPACEPro/deep_class.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/SPACEPro/deep_class.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/SPACEPro/scan_reader.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/SPACEPro/scan_reader.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser/Intensity.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraPeptideParser/Intensity.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser/LibraConditionHandler.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraPeptideParser/LibraConditionHandler.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser/LibraPeptideParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraPeptideParser/LibraPeptideParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser/LibraPeptideParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraPeptideParser/LibraPeptideParserMain.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser/LibraResult.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraPeptideParser/LibraResult.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser/LibraSummary.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraPeptideParser/LibraSummary.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser/LibraWrapper.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraPeptideParser/LibraWrapper.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraPeptideParser/Quantitation.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraPeptideParser/Quantitation.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraProteinRatioParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraProteinRatioParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraProteinRatioParser/LibraConditionHandler2.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraProteinRatioParser/LibraConditionHandler2.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraProteinRatioParser/LibraGroupPeptideParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraProteinRatioParser/LibraGroupPeptideParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraProteinRatioParser/LibraProteinRatioParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraProteinRatioParser/LibraProteinRatioParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraProteinRatioParser/LibraProteinRatioParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraProteinRatioParser/LibraProteinRatioParserMain.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraProteinRatioParser/QuantitationFile.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraProteinRatioParser/QuantitationFile.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Libra/LibraProteinRatioParser/StringConvertor.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Libra/LibraProteinRatioParser/StringConvertor.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParserMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.h:11, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.h:45, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParserMain.cpp:34: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.h:39, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParserMain.cpp:34: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3GroupPeptideParser.h:11, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.h:45, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParserMain.cpp:34: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParser.h:39, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Q3/Q3ProteinRatioParser/Q3ProteinRatioParserMain.cpp:34: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/PepXMLParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/StPeter/PepXMLParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/ProtXMLParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/StPeter/ProtXMLParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/StPeter.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/StPeter/StPeter.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/StPeter2Matrix touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/StPeter2Matrix/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/StPeter2Matrix/CProteinGroup.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/StPeter/StPeter2Matrix/CProteinGroup.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/StPeter2Matrix/CProteinMasterList.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/StPeter/StPeter2Matrix/CProteinMasterList.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/StPeter2Matrix/CStPeterMatrix.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/StPeter/StPeter2Matrix/CStPeterMatrix.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/StPeter/StPeter2Matrix/StPeter2Matrix.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/StPeter/StPeter2Matrix/StPeter2Matrix.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/Quantic.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:33, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:33, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/QuanticMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticMain.cpp:31: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:33, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticMain.cpp:31: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticMain.cpp:31: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:33, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticMain.cpp:31: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/QuanticParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:33, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/ext/hash_map:63, from /builddir/build/BUILD/release_6-0-0/src/Common/tpp_hashmap.h:78, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:33, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/QuanticProteinParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/QuanticProteinParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/QuanticProteinParser/QuanticGroupPeptideParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticProteinParser/QuanticGroupPeptideParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/QuanticProteinParser/QuanticMSMSSeqData.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticProteinParser/QuanticMSMSSeqData.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/QuanticProteinParser/QuanticProteinRatio.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticProteinParser/QuanticProteinRatio.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/QuanticProteinParser/QuanticProteinRatioParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticProteinParser/QuanticProteinRatioParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/Quantic/QuanticProteinParser/QuanticProteinRatioParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/QuanticProteinParser/QuanticProteinRatioParserMain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressGroupPeptideParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressGroupPeptideParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressGroupPeptideParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressGroupPeptideParser.h:4, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressGroupPeptideParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressGroupPeptideParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressGroupPeptideParser.h:4, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressGroupPeptideParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressCGIParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressCGIParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressCGIParser/XPressCGIParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIParser/XPressCGIParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressCGIParser/xpresscgimain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIParser/xpresscgimain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressCGIProteinDisplayParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressCGIProteinDisplayParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/../XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:46, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.h:38, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.cpp:32: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Common/constants.h:4, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/../XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:46, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.h:38, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.cpp:32: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Common/constants.h:4, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplayMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplayMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/../XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:46, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.h:38, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplayMain.cpp:37: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplayMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/../XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:46, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplay.h:38, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplayMain.cpp:37: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressCGIProteinDisplayParser/XPressCGIProteinDisplayMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressPeptideParser/XPressPeptideParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressPeptideParser/XPressPeptideParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideParser/XPressPeptideParserMain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressPeptideUpdateParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressPeptideUpdateParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.h:44, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.cpp:34: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.cpp:34: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.h:44, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.cpp:34: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.h:37, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.cpp:34: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.h:44, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cpp:47: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParser.h:44, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cpp:47: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressPeptideUpdateParser/XPressPeptideUpdateParserMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressProteinRatioParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressProteinRatioParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/../XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:46, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.cpp:36: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:40, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.cpp:36: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/../XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:46, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.cpp:36: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:40, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.cpp:36: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParserMain.o /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParserMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/../XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:46, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParserMain.cpp:34: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:40, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParserMain.cpp:34: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/../XPressGroupPeptideParser.h:12, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:46, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParserMain.cpp:34: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParser.h:40, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/XPress/XPressProteinRatioParser/XPressProteinRatioParserMain.cpp:34: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplay2Main.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPRatioProteinCGIDisplayParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIDisplayParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPCGIDisplay/ASAPCGIParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lgsl -lgslcblas -lfann \ -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/ASAPCGIDisplay.cgi g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/ASAPRatioPeptideCGIDisplayParserMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/ASAPRatioPeptideCGIDisplayParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Quantitation/ASAPRatio/ASAPRatioPeptideCGIDisplayParser/ASAPRatioPeptideUpdateParser.o 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/builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTMAPredictionLibImporter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTMgfSearchTask.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTMgfSearchTask.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTMs2LibImporter.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTMs2LibImporter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTMspLibImporter.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTMspLibImporter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTMspSearchTask.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTMspSearchTask.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTMzLibIndex.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTMzLibIndex.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTMzXMLLibImporter.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTMzXMLLibImporter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTMzXMLSearchTask.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTMzXMLSearchTask.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTPeakList.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTPeakList.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTPepXMLLibImporter.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTPepXMLLibImporter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTPepXMLSearchOutput.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTPepXMLSearchOutput.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTPeptideLibIndex.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTPeptideLibIndex.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTQuery.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTQuery.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTReplicates.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTReplicates.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTSearch.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearch.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTSearchOutput.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchOutput.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTSearchParams.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchParams.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchParams.cpp:13: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/bits/stl_algobase.h:59, from /usr/include/c++/11/vector:60, from /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchParams.hpp:4, from /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchParams.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/ICATMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/pICalculator.h:30, from /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchParams.cpp:13: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/bits/stl_algobase.h:59, from /usr/include/c++/11/vector:60, from /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchParams.hpp:4, from /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchParams.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTSearchTask.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchTask.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTSearchTaskStats.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSearchTaskStats.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTSimScores.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSimScores.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTSpLibImporter.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTSpLibImporter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTTsvLibImporter.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTTsvLibImporter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTTxtSearchOutput.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTTxtSearchOutput.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTXHunterLibImporter.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTXHunterLibImporter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTXlsSearchOutput.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraSTXlsSearchOutput.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraST_kwset.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraST_kwset.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraST_obstack.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/SpectraST_obstack.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/XMLWalker.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/XMLWalker.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -DLIB_BUILD -c -o 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/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/tandem sed 's?_DEFAULT_INPUT_LOCATION_?/usr/local/tpp/conf?g' /builddir/build/BUILD/release_6-0-0/src/Search/XTandem/bin/tandem_params.xml > /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/tandem_params.xml sed 's?_DEFAULT_INPUT_LOCATION_?/usr/local/tpp/conf?g' /builddir/build/BUILD/release_6-0-0/src/Search/XTandem/bin/isb_default_input_kscore.xml > /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/isb_default_input_kscore.xml sed 's?_DEFAULT_INPUT_LOCATION_?/usr/local/tpp/conf?g' /builddir/build/BUILD/release_6-0-0/src/Search/XTandem/bin/isb_default_input_native.xml > /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/isb_default_input_native.xml sed 's?_DEFAULT_INPUT_LOCATION_?/usr/local/tpp/conf?g' /builddir/build/BUILD/release_6-0-0/src/Search/XTandem/bin/taxonomy.xml > /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/taxonomy.xml g++ 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/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgsl -lgslcblas \ -lpwiz -lfann -lgzstream -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/plotspectrast.cgi g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/plotspectrast.o /builddir/build/BUILD/release_6-0-0/src/Search/SpectraST/plotspectrast.cpp g++ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/plotspectrast.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Search/SpectraST/SpectraSTLibEntry.o 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-I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/calculate_pi.o /builddir/build/BUILD/release_6-0-0/src/Util/calculate_pi.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/checkdb1.o /builddir/build/BUILD/release_6-0-0/src/Util/checkdb1.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/compute_p.o /builddir/build/BUILD/release_6-0-0/src/Util/compute_p.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/decoyFASTA.o /builddir/build/BUILD/release_6-0-0/src/Util/decoyFASTA.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/digestdb1.o /builddir/build/BUILD/release_6-0-0/src/Util/digestdb1.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/dta-xml.o /builddir/build/BUILD/release_6-0-0/src/Util/dta-xml.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/dtafilter1.o /builddir/build/BUILD/release_6-0-0/src/Util/dtafilter1.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/out2summary.o /builddir/build/BUILD/release_6-0-0/src/Util/out2summary.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/pep_dbcount.o /builddir/build/BUILD/release_6-0-0/src/Util/pep_dbcount.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/runsearch1.o /builddir/build/BUILD/release_6-0-0/src/Util/runsearch1.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/seeker.o /builddir/build/BUILD/release_6-0-0/src/Util/seeker.cpp /builddir/build/BUILD/release_6-0-0/src/Util/seeker.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/release_6-0-0/src/Util/seeker.cpp:57:22: warning: 'char* gets(char*)' is deprecated [-Wdeprecated-declarations] 57 | errCheckMe = gets(buf); | ~~~~^~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Util/seeker.cpp:31: /usr/include/stdio.h:605:14: note: declared here 605 | extern char *gets (char *__s) __wur __attribute_deprecated__; | ^~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/setWin32Permissions.o /builddir/build/BUILD/release_6-0-0/src/Util/setWin32Permissions.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/subsetdb1.o /builddir/build/BUILD/release_6-0-0/src/Util/subsetdb1.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/tpp_hostname.o /builddir/build/BUILD/release_6-0-0/src/Util/tpp_hostname.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/translateDNA2AA-FASTA.o /builddir/build/BUILD/release_6-0-0/src/Util/translateDNA2AA-FASTA.cpp /builddir/build/BUILD/release_6-0-0/src/Util/translateDNA2AA-FASTA.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/release_6-0-0/src/Util/translateDNA2AA-FASTA.cpp:145:13: warning: 'void* memcpy(void*, const void*, size_t)' reading 4096 bytes from a region of size 4095 [-Wstringop-overread] 145 | memcpy(pDB.szProt, szBuf+1, SIZE_DESCR); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Util/translateDNA2AA-FASTA.cpp:61:9: note: at offset 1 into source object 'szBuf' of size 4096 61 | char szBuf[SIZE_DESCR], | ^~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/batchcoverage touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/batchcoverage/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/batchcoverage/Coverage.o /builddir/build/BUILD/release_6-0-0/src/Util/batchcoverage/Coverage.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/batchcoverage/main.o /builddir/build/BUILD/release_6-0-0/src/Util/batchcoverage/main.cpp g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/add_mz.o -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/add_mz g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/checkdb1.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/SHA1_TPP.o -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/checkdb g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/calculate_pi.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/calc_pI.o -lm -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/calculate_pi g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/decoyFASTA.o -lm -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/decoyFASTA g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/digestdb1.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/calc_pI.o -lm -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/digestdb g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/dta-xml.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lfann -lgsl -lgslcblas -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/dta-xml.cgi g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/compute_p.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lgsl -lgslcblas -lm -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/compute_p g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/out2summary.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lm -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/out2summary g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/pep_dbcount.o -lm -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/pep_dbcount g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/subsetdb1.o -lm -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/subsetdb g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/tpp_hostname.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lgsl -lgslcblas -lfann -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/tpp_hostname g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/translateDNA2AA-FASTA.o -lm -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/translateDNA2AA-FASTA g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/batchcoverage/main.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/batchcoverage/Coverage.o -lm -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/batchcoverage mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/fixPepXMLScan touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/fixPepXMLScan/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/fixPepXMLScan/fixPepXMLScan.o /builddir/build/BUILD/release_6-0-0/src/Util/fixPepXMLScan/fixPepXMLScan.cpp g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Util/fixPepXMLScan/fixPepXMLScan.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/fixPepXMLScan mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/msnExtract touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/msnExtract/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/msnExtract/MsnExtract.o /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnExtract.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSReader.h:19, from /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnExtract.h:31, from /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnExtract.cpp:19: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnExtract.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnExtract.cpp:19: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iosfwd:38, from /usr/include/c++/11/ios:38, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnExtract.cpp:16: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Quantitation/Quantic/Quantic.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnExtract.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnExtract.cpp:19: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iosfwd:38, from /usr/include/c++/11/ios:38, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnExtract.cpp:16: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/msnExtract/MsnSelect.o /builddir/build/BUILD/release_6-0-0/src/Validation/msnExtract/MsnSelect.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/rtExtract touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/rtExtract/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/rtExtract/RtExtract.o /builddir/build/BUILD/release_6-0-0/src/Validation/rtExtract/RtExtract.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSReader.h:19, from /builddir/build/BUILD/release_6-0-0/src/Validation/rtExtract/RtExtract.h:27, from /builddir/build/BUILD/release_6-0-0/src/Validation/rtExtract/RtExtract.cpp:17: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/rtExtract/RtSelect.o /builddir/build/BUILD/release_6-0-0/src/Validation/rtExtract/RtSelect.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/mzTrace touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/mzTrace/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/mzTrace/MzTrace.o /builddir/build/BUILD/release_6-0-0/src/Validation/mzTrace/MzTrace.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/mzTrace/MzWindows.o /builddir/build/BUILD/release_6-0-0/src/Validation/mzTrace/MzWindows.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/DIAScan.o /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DIAScan.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/DIAUmpirePeaks.o /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DIAUmpirePeaks.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/DiscoFilter.o /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSReader.h:19, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:40, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.cpp:1: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:47, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/bits/stl_algobase.h:59, from /usr/include/c++/11/deque:60, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:47, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/bits/stl_algobase.h:59, from /usr/include/c++/11/deque:60, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/DiscoMain.o /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSReader.h:19, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:40, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoMain.cpp:32: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:47, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoMain.cpp:32: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/bits/stl_algobase.h:59, from /usr/include/c++/11/deque:60, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:47, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoMain.cpp:32: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/bits/stl_algobase.h:59, from /usr/include/c++/11/deque:60, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoFilter.h:35, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/DiscoMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/RtMzPeaks.o /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/RtMzPeaks.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/offset_peak.o /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/offset_peak.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/offset_peak_ionmob.o /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/offset_peak_ionmob.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/offset_peak_ionmob.h:3, from /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/offset_peak_ionmob.cpp:1: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -I/builddir/build/BUILD/release_6-0-0/extern/Hardklor -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/rsq_peak.o /builddir/build/BUILD/release_6-0-0/src/Validation/Disco/rsq_peak.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/InterProphetMain.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.h:44, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetMain.cpp:32: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphet.h:37, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.h:44, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetMain.cpp:32: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /builddir/build/BUILD/release_6-0-0/src/Parsers/Algorithm2XML/SearchResult/SearchResult.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetParser.h:34, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/InterProphetMain.cpp:32: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/NRSModel.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/NRSModel.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/NSEModel.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/NSEModel.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/NSIModel.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/NSIModel.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/NSMModel.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/NSMModel.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/NSSModel.o /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/NSSModel.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParserMain.o /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParserMain.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.h:47, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParserMain.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.h:39, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParserMain.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/DiscreteMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/NMCMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureModel/MixtureModel.h:16, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.h:47, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParserMain.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/iostream:38, from /builddir/build/BUILD/release_6-0-0/src/Common/sysdepend.h:17, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.h:39, from /builddir/build/BUILD/release_6-0-0/src/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParserMain.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ProteinProphet.o /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ProteinProphet.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ProteinProphet.cpp:64: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from /usr/include/c++/11/math.h:36, from /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ProteinProphet.cpp:38: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/Distribution/NonParametricDistribution.h:8, from /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/KDModel.h:41, from /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ProteinProphet.cpp:64: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cmath:41, from /usr/include/c++/11/math.h:36, from /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ProteinProphet.cpp:38: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ProteinProphet.cpp: In function 'void findCommonPeps(const std::vector&, std::map, std::__cxx11::basic_string >&)': /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ProteinProphet.cpp:6308:42: warning: narrowing conversion of '(((val % radix) + 97) - (place > 0))' from 'int' to 'char' [-Wnarrowing] 6308 | char c[2] = {((val%radix)+'a'-(place>0)),0}; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ppParentProtein.o /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ppParentProtein.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ppPeptide.o /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ppPeptide.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ppProtein.o /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ppProtein.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ppSpectrum.o /builddir/build/BUILD/release_6-0-0/src/Validation/ProteinProphet/ppSpectrum.cpp g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/msnExtract/MsnExtract.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/msnExtract/MsnSelect.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/../Quantitation/Quantic/Quantic.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libspectrast.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lgsl -lgslcblas -lmstoolkitlite -lhardklor -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/msnExtract g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/rtExtract/RtExtract.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/rtExtract/RtSelect.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libhardklor.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmstoolkitlite.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lmstoolkitlite -lhardklor -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/rtExtract g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/mzTrace/MzTrace.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/mzTrace/MzWindows.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libhardklor.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmstoolkitlite.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lmstoolkitlite -lhardklor -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/mzTrace g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/DiscoMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/DiscoFilter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/DIAUmpirePeaks.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/DIAScan.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/RtMzPeaks.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/offset_peak.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/offset_peak_ionmob.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Disco/rsq_peak.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libhardklor.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmstoolkitlite.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lgsl -lgslcblas -lfann \ -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lmstoolkitlite \ -lhardklor -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/DiscoFilter g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/InterProphetMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lgsl -lgslcblas -lfann -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/InterProphetParser g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParserMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PeptideProphet/PeptideProphetParser/PeptideProphetParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lgsl -lgslcblas -lfann -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/PeptideProphetParser g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ProteinProphet.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ppPeptide.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ppProtein.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ppParentProtein.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/ProteinProphet/ppSpectrum.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/ProteinProphet g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PTMProphetParser/PTMProphetMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/InterProphet/InterProphetParser/KDModel.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PTMProphetParser/PTMProphetMpx.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/PTMProphetParser/PTMProphetParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libspectrast.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lgsl -lgslcblas -lfann -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/PTMProphetParser g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Respect/RespectMain.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Respect/RespectFilter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Validation/Respect/RespectParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libspectrast.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lgsl -lgslcblas -lfann -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/RespectParser mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/cometresult1.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/cometresult1.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/comet-fastadb touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/comet-fastadb/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/comet-fastadb/calc_pI.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/comet-fastadb/calc_pI.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/comet-fastadb/comet-fastadb1.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/comet-fastadb/comet-fastadb1.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/comet-pepxml touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/comet-pepxml/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/comet-pepxml/comet-pepxml.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/comet-pepxml/comet-pepxml.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/plot-msms touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/plot-msms/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/plot-msms/plot-msms-js.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/plot-msms/plot-msms-js.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/sequest-tgz-out touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/sequest-tgz-out/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/sequest-tgz-out/sequest-tgz-out1.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/sequest-tgz-out/sequest-tgz-out1.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/InteractParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/InteractParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/InteractParser/InteractParser.o /builddir/build/BUILD/release_6-0-0/src/Visualization/InteractParser/InteractParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/InteractParser/InteractParserMain.o /builddir/build/BUILD/release_6-0-0/src/Visualization/InteractParser/InteractParserMain.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/BasenameParser.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/BasenameParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/Pep3DParser.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/Pep3DParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/Pep3D_functions.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/Pep3D_functions.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/SpectrumParser.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.h:19, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.h:4, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.h:19, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.cpp:1: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.h:4, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.cpp:1: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/cgi_disCidData.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/cgi_disCidData.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.h:19, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/cgi_disCidData.cpp:47: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In member function 'void ThreadPool::wait_on_threads()': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:139:20: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 139 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cstdlib:41, from /usr/include/c++/11/stdlib.h:36, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/cgi_disCidData.cpp:36: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistr.h:49, from /builddir/build/BUILD/release_6-0-0/src/Validation/DiscriminateFunction/DiscrimValMixtureDistr.h:4, from /builddir/build/BUILD/release_6-0-0/src/Validation/MixtureDistribution/MixtureDistrFactory.h:30, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/SpectrumParser.h:19, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/cgi_disCidData.cpp:47: /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h: In function 'void* threadStart(void*)': /builddir/build/BUILD/release_6-0-0/src/Validation/InterProphet/InterProphetParser/ThreadPool.h:348:54: warning: 'int pthread_yield()' is deprecated: pthread_yield is deprecated, use sched_yield instead [-Wdeprecated-declarations] 348 | pthread_yield(); | ~~~~~~~~~~~~~^~ In file included from /usr/include/features.h:488, from /usr/include/c++/11/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/11/x86_64-redhat-linux/bits/c++config.h:2732, from /usr/include/c++/11/cstdlib:41, from /usr/include/c++/11/stdlib.h:36, from /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/cgi_disCidData.cpp:36: /usr/include/pthread.h:479:12: note: declared here 479 | extern int __REDIRECT_NTH (pthread_yield, (void), sched_yield) | ^~~~~~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/cgi_getCidData.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/cgi_getCidData.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/cgi_Pep3D_xml touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/cgi_Pep3D_xml/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/cgi_Pep3D_xml/cgi_Pep3D_xml.o /builddir/build/BUILD/release_6-0-0/src/Visualization/Pep3D/cgi_Pep3D_xml/cgi_Pep3D_xml.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/HeaderMRSSQ.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/HeaderMRSSQ.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/HeaderOnly.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/HeaderOnly.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/MRSOffsetOnly.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/MRSOffsetOnly.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXField.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXField.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXFilter.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXFilter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXIndexFile.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXIndexFile.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXMain.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXMain.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXNode.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXNode.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXNodeVecBuilder.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXNodeVecBuilder.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXNodeVecSorter.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXNodeVecSorter.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXOptions.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXOptions.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXParser.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXParser.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXSAXHandler.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXSAXHandler.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXUtility.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXUtility.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PepXViewer.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PepXViewer.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/PipelineAnalysis.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/PipelineAnalysis.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/SQOffsetOnly.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/SQOffsetOnly.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/XMLNode.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/XMLNode.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -DBOOST_NO_CXX11_SCOPED_ENUMS -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepXMLViewer/XMLTree.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepXMLViewer/XMLTree.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/ShowXIC touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/ShowXIC/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/ShowXIC/ShowXIC.o /builddir/build/BUILD/release_6-0-0/src/Visualization/ShowXIC/ShowXIC.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/xinteract touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/xinteract/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/xinteract/xinteract.o /builddir/build/BUILD/release_6-0-0/src/Visualization/xinteract/xinteract.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepExtract touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepExtract/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -DPWIZ_USER_VERSION_INFO_H_STR="\"TPP v6.0.0 OmegaBlock, Build 202201041248-exported (Linux-x86_64)\"" -D_USE_MATH_DEFINES -Wno-error=invalid-offsetof -MMD -I/builddir/build/BUILD/release_6-0-0/src/Parsers/ramp -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/Eigen -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/CSpline -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_aux -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0 -I/builddir/build/BUILD/release_6-0-0/extern/ProteoWizard/pwiz-src/libraries/libsvm-3.0 -DWITHOUT_MZ5 -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepExtract/PepExtract.o /builddir/build/BUILD/release_6-0-0/src/Visualization/PepExtract/PepExtract.cpp g++ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/cgi_disCidData.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/Pep3D_functions.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/SpectrumParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lfann -lgsl -lgslcblas -lpwiz -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/disCidData_xml.cgi g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/cgi_getCidData.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/Pep3D_functions.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz \ -lpwiz -lgzstream \ -lgsl -lgslcblas -lfann \ -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/getCidData_xml.cgi g++ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/cgi_Pep3D_xml/cgi_Pep3D_xml.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/BasenameParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/Pep3D_functions.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Pep3D/Pep3DParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lgsl -lgslcblas -lfann \ -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lgd -lpng -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/Pep3D_xml.cgi g++ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/comet-fastadb/comet-fastadb1.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/Comet/comet-fastadb/calc_pI.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lgzstream \ -lpwiz -lgsl -lgslcblas -lfann \ -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lgd -lpng -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/comet-fastadb.cgi cp /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/cometlinks.def /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/cometlinks.def mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/.d cp 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cp /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/plot-msms/js/jquery-ui.min.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery-ui.min.js cp /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/plot-msms/js/jquery.flot.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.js cp /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/plot-msms/js/jquery.flot.selection.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.selection.js cp /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/plot-msms/js/jquery.min.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.min.js cp /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/plot-msms/js/peptide.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/peptide.js cp /builddir/build/BUILD/release_6-0-0/src/Visualization/Comet/plot-msms/js/plot-msms-utils.js 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-L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/ShowXIC/ShowXIC.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lpwiz \ -lgsl -lgslcblas -lfann -lgzstream \ -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/ShowXIC.cgi g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/xinteract/xinteract.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lpwiz \ -lgsl -lgslcblas -lfann -lgzstream \ -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/xinteract g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Visualization/PepExtract/PepExtract.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libtpp.a -lpwiz \ -lgsl -lgslcblas -lfann -lgzstream \ -lboost_iostreams -lboost_regex -lboost_chrono -lboost_filesystem -lboost_system -lboost_thread -lboost_serialization -lpthread -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/pepExtract mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/common touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/common/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/common/Base64.o /builddir/build/BUILD/release_6-0-0/src/mzXML/common/Base64.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/common/SHA1.o /builddir/build/BUILD/release_6-0-0/src/mzXML/common/SHA1.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/converters/dta2mzxml touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/converters/dta2mzxml/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/converters/dta2mzxml/Dta2mzXML.o /builddir/build/BUILD/release_6-0-0/src/mzXML/converters/dta2mzxml/Dta2mzXML.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/converters/dta2mzxml/main.o /builddir/build/BUILD/release_6-0-0/src/mzXML/converters/dta2mzxml/main.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/mzXMLIndexer touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/mzXMLIndexer/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/Parsers/ramp -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/mzXMLIndexer/indexmzXML.o /builddir/build/BUILD/release_6-0-0/src/mzXML/tools/mzXMLIndexer/indexmzXML.cpp In file included from /builddir/build/BUILD/release_6-0-0/src/mzXML/tools/mzXMLIndexer/indexmzXML.cpp:33: In function 'const char* strchr(const char*, int)', inlined from 'RAMPREAL* readPeaks(RAMPFILE*, ramp_fileoffset_t)' at /builddir/build/BUILD/release_6-0-0/src/Parsers/ramp/ramp.cpp:1857:41: /usr/include/string.h:241:27: warning: 'char* __builtin_strchr(const char*, int)' reading 1 or more bytes from a region of size 0 [-Wstringop-overread] 241 | return __builtin_strchr (__s, __c); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In function 'const char* strchr(const char*, int)', inlined from 'RAMPREAL* readPeaks(RAMPFILE*, ramp_fileoffset_t)' at /builddir/build/BUILD/release_6-0-0/src/Parsers/ramp/ramp.cpp:1876:41: /usr/include/string.h:241:27: warning: 'char* __builtin_strchr(const char*, int)' reading 1 or more bytes from a region of size 0 [-Wstringop-overread] 241 | return __builtin_strchr (__s, __c); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/mzXMLIndexer/indexmzXMLSHA1.o /builddir/build/BUILD/release_6-0-0/src/mzXML/tools/mzXMLIndexer/indexmzXMLSHA1.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/mzXMLIndexer/indexmzXMLSHA1Wrapper.o /builddir/build/BUILD/release_6-0-0/src/mzXML/tools/mzXMLIndexer/indexmzXMLSHA1Wrapper.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/readmzXML touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/readmzXML/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/readmzXML/readmzXML.o /builddir/build/BUILD/release_6-0-0/src/mzXML/tools/readmzXML/readmzXML.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/DidIScanThat touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/DidIScanThat/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/DidIScanThat/DidIScanThat.o /builddir/build/BUILD/release_6-0-0/src/mzXML/tools/DidIScanThat/DidIScanThat.cpp mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/MikesMagicalMzMLShrinker touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/MikesMagicalMzMLShrinker/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -I/builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser -DXML_LARGE_SIZE -I/builddir/build/BUILD/release_6-0-0/src/Parsers/mzParser -DXML_LARGE_SIZE -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/MikesMagicalMzMLShrinker/MikesMagicalMzMLShrinker.o /builddir/build/BUILD/release_6-0-0/src/mzXML/tools/MikesMagicalMzMLShrinker/MikesMagicalMzMLShrinker.cpp g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libgzstream.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/converters/dta2mzxml/Dta2mzXML.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/converters/dta2mzxml/main.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/common/Base64.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/common/SHA1.o -lgzstream -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/dta2mzxml g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/mzXMLIndexer/indexmzXML.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/mzXMLIndexer/indexmzXMLSHA1.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/mzXMLIndexer/indexmzXMLSHA1Wrapper.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/indexmzXML g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/readmzXML/readmzXML.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libcommon.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/readmzXML g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/DidIScanThat/DidIScanThat.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/DidIScanThat mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/.d g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzActivation.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzActivation.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzAnalyzer.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzAnalyzer.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzBinary.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzBinary.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzBinaryDataArray.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzBinaryDataArray.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzBinaryDataArrayList.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzBinaryDataArrayList.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzComponentList.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzComponentList.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzContact.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzContact.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzCv.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzCv.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzCvList.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzCvList.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzCvParam.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzCvParam.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzDataProcessing.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzDataProcessing.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzDataProcessingList.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzDataProcessingList.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzDetector.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzDetector.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzFileChecksum.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzFileChecksum.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzFileContent.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzFileContent.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzFileDescription.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzFileDescription.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ 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/builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzIndexList.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzIndexListOffset.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzIndexListOffset.cpp g++ -O3 -std=c++11 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/builddir/build/BUILD/release_6-0-0/src -I/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/include -D__LINUX__ -fPIC -MMD -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzInstrumentConfiguration.o /builddir/build/BUILD/release_6-0-0/src/Parsers/NeoMzMLParser/CnmzInstrumentConfiguration.cpp g++ -O3 -std=c++11 -Wno-deprecated 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/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzSourceFileList.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzSpectrum.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzSpectrumList.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/CnmzUserParam.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/Parsers/NeoMzMLParser/NeoMzMLParser.o ar: creating /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libneomzml.a g++ -L/builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/mzXML/tools/MikesMagicalMzMLShrinker/MikesMagicalMzMLShrinker.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libneomzml.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmzparser.a -lexpat -lz /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libneomzml.a -lexpat -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/MikesMagicalMzMLShrinker cp /builddir/build/BUILD/release_6-0-0/perl/bin/DIALib-QC_RPlot.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/DIALib-QC_RPlot.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/ProphetModels.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/ProphetModels.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/ProtProphModels.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/ProtProphModels.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/SSRCalc3.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/SSRCalc3.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/assess_swathlib.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/assess_swathlib.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/clips.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/clips.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/comparePeps_Categories.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/comparePeps_Categories.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/compareProts.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/compareProts.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/compareProts3.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/compareProts3.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/compareProts_ClusterHM.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/compareProts_ClusterHM.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/createChargeFile.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/createChargeFile.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/decoyFastaGenerator.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/decoyFastaGenerator.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/exporTPP.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/exporTPP.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/fileDownloader.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/fileDownloader.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/get_prots.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/get_prots.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/mergeCharges.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/mergeCharges.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/novor2xml.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/novor2xml.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/promast.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/promast.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/ptm2plot.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/ptm2plot.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/quiddist.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/quiddist.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/renamedat.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/renamedat.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/replaceall.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/replaceall.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/runMzIndex.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/runMzIndex.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/test_tpi.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/test_tpi.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/tpp_models.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/tpp_models.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/updatepaths.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/updatepaths.pl cp /builddir/build/BUILD/release_6-0-0/perl/bin/tpptray.bat /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin cp /builddir/build/BUILD/release_6-0-0/perl/bin/SSRCalc3.par /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/ProtXMLViewer.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/ProtXMLViewer.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/calctppstat.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/calctppstat.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/check_env.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/check_env.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/fetchDataset.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/fetchDataset.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/madcaps.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/madcaps.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/mascotout.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/mascotout.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/plotpp.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/plotpp.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/promastcgi.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/promastcgi.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/protxml2html.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/protxml2html.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/qsir.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/qsir.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/show_pipeline_help.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/show_pipeline_help.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/show_tmp_pngfile.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/show_tmp_pngfile.pl cp /builddir/build/BUILD/release_6-0-0/perl/cgi-bin/tpp_files.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/tpp_files.pl mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/perl touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/perl/.d cp /builddir/build/BUILD/release_6-0-0/perl/lib/TPP.pm /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/perl/TPP.pm cp /builddir/build/BUILD/release_6-0-0/perl/lib/tpplib_perl.pm /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/perl/tpplib_perl.pm mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/perl/TPP touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/perl/TPP/.d cp /builddir/build/BUILD/release_6-0-0/perl/lib/TPP/StatUtilities.pm /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/perl/TPP/StatUtilities.pm mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/man/man1 touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/man/man1/.d Manifying 1 pod document mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/man/man3 touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/man/man3/.d perl "-MExtUtils::Command::MM" -e pod2man "--" --section=3 --perm_rw=644 /builddir/build/BUILD/release_6-0-0/perl/lib/TPP/StatUtilities.pm \ /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/man/man3/TPP.StatUtilities.3 Manifying 1 pod document cp /builddir/build/BUILD/release_6-0-0/perl/tpp_gui/tpp_gui.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/tpp_gui.pl perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/tpp_gui.pl perl -i.bak -pe 's#(=>\s+'"'"')(/usr)?/bin/#$1#' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/tpp_gui.pl rm -f /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/tpp_gui.pl.bak cp /builddir/build/BUILD/release_6-0-0/perl/tpp_gui/tpp_gui_config.pl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/tpp_gui_config.pl perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/cgi-bin/tpp_gui_config.pl cp /builddir/build/BUILD/release_6-0-0/perl/tpp_gui/tpp_gui.css /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tpp_gui.css perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tpp_gui.css cp /builddir/build/BUILD/release_6-0-0/perl/tpp_gui/tpp_gui.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tpp_gui.js perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tpp_gui.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tpp_gui.js cp /builddir/build/BUILD/release_6-0-0/perl/tpp_gui/filterTable.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/filterTable.js perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/filterTable.js mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/.d cp /builddir/build/BUILD/release_6-0-0/perl/tpp_gui/isb_logo.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/isb_logo.png perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/isb_logo.png cp /builddir/build/BUILD/release_6-0-0/perl/tpp_gui/nigms.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/nigms.png perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/nigms.png cp /builddir/build/BUILD/release_6-0-0/perl/tpp_gui/spc_logo.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/spc_logo.png perl -MExtUtils::MY -e 'MY->fixin(shift)' -- /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/spc_logo.png mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/users/guest touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/users/guest/.d cp /builddir/build/BUILD/release_6-0-0/perl/tpp_gui/users/guest/.password /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/users/guest/.password chmod go-wx /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/users/guest/.password chmod g+rwx /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/users/guest/ mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters/.d cd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters; /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/bin/comet -p Created: comet.params.new mv /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters/comet.params.new /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters/comet.params perl -pi -e 's#peff_obo =#peff_obo = /usr/local/tpp/conf/PSI-MOD.obo#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters/comet.params cp /builddir/build/BUILD/release_6-0-0/extern/kojak/Kojak.conf /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters cp /builddir/build/BUILD/release_6-0-0/src/Search/XTandem/bin/isb_default_input_kscore.xml /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters cp /builddir/build/BUILD/release_6-0-0/src/Search/XTandem/bin/isb_default_input_native.xml /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters cp /builddir/build/BUILD/release_6-0-0/src/Search/XTandem/bin/tandem-style.xsl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters cp /builddir/build/BUILD/release_6-0-0/src/Search/XTandem/bin/tandem_params.xml /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters/tandem_params.xml perl -pi -e 's#_DEFAULT_INPUT_LOCATION_#/usr/local/tpp/data/params#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters/tandem_params.xml cp /builddir/build/BUILD/release_6-0-0/src/Search/XTandem/bin/taxonomy.xml /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/parameters g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzp_base64.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzp_base64.o /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzp_base64.cpp: In function 'int mzParser::b64_decode_mio(char*, char*, size_t)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzp_base64.cpp:121:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 121 | int register a; | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzp_base64.cpp:122:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 122 | int register b; | ^ g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/BasicSpectrum.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.BasicSpectrum.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzParser.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzParser.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/RAMPface.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.RAMPface.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/saxhandler.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxhandler.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/saxmzmlhandler.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxmzmlhandler.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/saxmzxmlhandler.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxmzxmlhandler.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/Czran.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.Czran.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mz5handler.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mz5handler.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzpMz5Config.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzpMz5Config.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/mzpMz5Structs.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzpMz5Structs.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/BasicChromatogram.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.BasicChromatogram.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/mzParser/PWIZface.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.PWIZface.o g++ -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/MSReader.cpp -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/MSReader.o In file included from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/Spectrum.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSReader.h:19, from /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/MSToolkit/MSReader.cpp:16: /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::Peak_T& MSToolkit::Peak_T::operator=(const MSToolkit::Peak_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:125:3: warning: no return statement in function returning non-void [-Wreturn-type] 124 | intensity = p.intensity; +++ |+ return *this; 125 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::PeakIonMob_T& MSToolkit::PeakIonMob_T::operator=(const MSToolkit::PeakIonMob_T&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:137:3: warning: no return statement in function returning non-void [-Wreturn-type] 136 | ion_mob = p.ion_mob; +++ |+ return *this; 137 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::ZState& MSToolkit::ZState::operator=(const MSToolkit::ZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:147:3: warning: no return statement in function returning non-void [-Wreturn-type] 146 | mh = p.mh; +++ |+ return *this; 147 | } | ^ /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h: In member function 'MSToolkit::EZState& MSToolkit::EZState::operator=(const MSToolkit::EZState&)': /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include/MSToolkitTypes.h:160:3: warning: no return statement in function returning non-void [-Wreturn-type] 159 | pArea = s.pArea; +++ |+ return *this; 160 | } | ^ gcc -g -DDEBUG -static -I. -I/builddir/build/BUILD/release_6-0-0/extern/MSToolkit/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DGCC -DHAVE_EXPAT_CONFIG_H /builddir/build/BUILD/release_6-0-0/extern/MSToolkit/src/sqlite-3.7.7.1/sqlite3.c -c -o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/sqlite3.o ar rcs /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/lib/libmstoolkit.a /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/adler32.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/compress.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/crc32.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/deflate.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/inffast.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/inflate.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/infback.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/inftrees.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/trees.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/uncompr.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/zutil.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/xmlparse.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/xmlrole.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/xmltok.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.MSNumpress.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzp_base64.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.BasicSpectrum.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzParser.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.RAMPface.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxhandler.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxmzmlhandler.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.saxmzxmlhandler.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.Czran.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mz5handler.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzpMz5Config.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.mzpMz5Structs.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.BasicChromatogram.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzp.PWIZface.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/Spectrum.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/MSObject.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/mzMLWriter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/pepXMLWriter.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/MSReader.o /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/artifacts/MSToolkit/sqlite3.o cp /builddir/build/BUILD/release_6-0-0/conf/httpd-tpp.conf /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-tpp.conf perl -pi -e 's#_INSTALL_DIR_#/usr/local/tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-tpp.conf perl -pi -e 's#_TPP_DATADIR_#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-tpp.conf perl -pi -e 's#_TPP_BASEURL_#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-tpp.conf perl -pi -e 's#_TPP_DATAURL_#tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-tpp.conf perl -pi -e 's#_TPP_PORT_#10401#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-tpp.conf cp /builddir/build/BUILD/release_6-0-0/conf/httpd-2.4-tpp.conf /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-2.4-tpp.conf perl -pi -e 's#_INSTALL_DIR_#/usr/local/tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-2.4-tpp.conf perl -pi -e 's#_TPP_DATADIR_#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-2.4-tpp.conf perl -pi -e 's#_TPP_BASEURL_#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-2.4-tpp.conf perl -pi -e 's#_TPP_DATAURL_#tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-2.4-tpp.conf perl -pi -e 's#_TPP_PORT_#10401#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/httpd-2.4-tpp.conf cp /builddir/build/BUILD/release_6-0-0/conf/PSI-MOD.obo /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/PSI-MOD.obo cp /builddir/build/BUILD/release_6-0-0/conf/residue_modifications.cfg /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/conf/residue_modifications.cfg cp /builddir/build/BUILD/release_6-0-0/html/PG.html /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/PG.html sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/PG.html sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/PG.html sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/PG.html cp /builddir/build/BUILD/release_6-0-0/html/PPSX.html /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/PPSX.html sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/PPSX.html sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/PPSX.html sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/PPSX.html cp /builddir/build/BUILD/release_6-0-0/html/TPPcel.html /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/TPPcel.html sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/TPPcel.html sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/TPPcel.html sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/TPPcel.html cp /builddir/build/BUILD/release_6-0-0/html/index.html /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/index.html sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/index.html sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/index.html sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/index.html cp /builddir/build/BUILD/release_6-0-0/html/lorikeet.html /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/lorikeet.html sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/lorikeet.html sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/lorikeet.html sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/lorikeet.html cp /builddir/build/BUILD/release_6-0-0/html/ploTPP.html /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ploTPP.html sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ploTPP.html sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ploTPP.html sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ploTPP.html cp /builddir/build/BUILD/release_6-0-0/html/post_to_spectrast.html /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/post_to_spectrast.html sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/post_to_spectrast.html sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/post_to_spectrast.html sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/post_to_spectrast.html cp /builddir/build/BUILD/release_6-0-0/html/js/asap.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/asap.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/asap.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/asap.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/asap.js cp /builddir/build/BUILD/release_6-0-0/html/js/jquery.flot.axislabels.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.axislabels.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.axislabels.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.axislabels.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.axislabels.js cp /builddir/build/BUILD/release_6-0-0/html/js/jquery.flot.categories.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.categories.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.categories.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.categories.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.categories.js cp /builddir/build/BUILD/release_6-0-0/html/js/jquery.flot.errorbars.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.errorbars.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.errorbars.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.errorbars.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.errorbars.js cp /builddir/build/BUILD/release_6-0-0/html/js/jquery.flot.stack.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.stack.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.stack.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.stack.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/jquery.flot.stack.js cp /builddir/build/BUILD/release_6-0-0/html/js/plotpp.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/plotpp.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/plotpp.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/plotpp.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/plotpp.js cp /builddir/build/BUILD/release_6-0-0/html/js/ppsx.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/ppsx.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/ppsx.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/ppsx.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/ppsx.js cp /builddir/build/BUILD/release_6-0-0/html/js/proteographer.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/proteographer.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/proteographer.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/proteographer.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/proteographer.js cp /builddir/build/BUILD/release_6-0-0/html/js/protxml.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/protxml.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/protxml.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/protxml.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/protxml.js cp /builddir/build/BUILD/release_6-0-0/html/js/tpp.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tpp.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tpp.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tpp.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tpp.js cp /builddir/build/BUILD/release_6-0-0/html/js/tppcel.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tppcel.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tppcel.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tppcel.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/tppcel.js cp /builddir/build/BUILD/release_6-0-0/html/js/unimod.js /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/unimod.js sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/unimod.js sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/unimod.js sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/js/unimod.js cp /builddir/build/BUILD/release_6-0-0/html/css/asap.css /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/asap.css sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/asap.css sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/asap.css sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/asap.css cp /builddir/build/BUILD/release_6-0-0/html/css/pep3d.css /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/pep3d.css sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/pep3d.css sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/pep3d.css sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/pep3d.css cp /builddir/build/BUILD/release_6-0-0/html/css/plotpp.css /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/plotpp.css sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/plotpp.css sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/plotpp.css sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/plotpp.css cp /builddir/build/BUILD/release_6-0-0/html/css/proteographer.css /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/proteographer.css sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/proteographer.css sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/proteographer.css sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/proteographer.css cp /builddir/build/BUILD/release_6-0-0/html/css/protxml.css /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/protxml.css sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/protxml.css sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/protxml.css sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/protxml.css cp /builddir/build/BUILD/release_6-0-0/html/css/tpp.css /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tpp.css sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tpp.css sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tpp.css sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tpp.css cp /builddir/build/BUILD/release_6-0-0/html/css/tppcel.css /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tppcel.css sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tppcel.css sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tppcel.css sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/css/tppcel.css mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/.d cp /builddir/build/BUILD/release_6-0-0/html/ref/godefs.json /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/godefs.json sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/godefs.json sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/godefs.json sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/godefs.json cp /builddir/build/BUILD/release_6-0-0/html/ref/terms_bp.json /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_bp.json sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_bp.json sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_bp.json sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_bp.json cp /builddir/build/BUILD/release_6-0-0/html/ref/terms_cc.json /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_cc.json sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_cc.json sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_cc.json sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_cc.json cp /builddir/build/BUILD/release_6-0-0/html/ref/terms_mf.json /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_mf.json sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_mf.json sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_mf.json sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/terms_mf.json cp /builddir/build/BUILD/release_6-0-0/html/ref/unimod.json /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/unimod.json sed -i 's#__TPP_BUILDID__#TPP v6.0.0 OmegaBlock, Build 202201041312-exported (Linux-x86_64)#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/unimod.json sed -i 's#__TPP_BASEURL__#tpp#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/unimod.json sed -i 's#__TPP_DATADIR__#/usr/local/tpp/data#g' /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/ref/unimod.json cp /builddir/build/BUILD/release_6-0-0/html/images/pa_tiny.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/pa_tiny.png cp /builddir/build/BUILD/release_6-0-0/html/images/qMark.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/qMark.png cp /builddir/build/BUILD/release_6-0-0/html/images/spectrast_tiny.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/spectrast_tiny.png cp /builddir/build/BUILD/release_6-0-0/html/images/pep-proph.jpg /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/pep-proph.jpg cp /builddir/build/BUILD/release_6-0-0/html/images/prot-proph.jpg /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/prot-proph.jpg cp /builddir/build/BUILD/release_6-0-0/html/images/petunia.ico /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/petunia.ico cp /builddir/build/BUILD/release_6-0-0/html/images/tpp.ico /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/tpp.ico mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/.d cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help1.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help1.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help10.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help10.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help11.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help11.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help12.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help12.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help13.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help13.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help2.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help2.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help3.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help3.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help4.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help4.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help5.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help5.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help6.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help6.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help7.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help7.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help8.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help8.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pipeline_help9.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pipeline_help9.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help00.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help00.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help01.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help01.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help010.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help010.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help0115.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help0115.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help02.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help02.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help03.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help03.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help04.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help04.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help05.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help05.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help06.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help06.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help07.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help07.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help08.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help08.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help085.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help085.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help086.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help086.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/protxml_help087.png /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/protxml_help087.png cp /builddir/build/BUILD/release_6-0-0/html/images/help/pep-proph.jpg /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/pep-proph.jpg cp /builddir/build/BUILD/release_6-0-0/html/images/help/prot-proph.jpg /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/html/images/help/prot-proph.jpg mkdir -p /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema touch /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/.d cp /builddir/build/BUILD/release_6-0-0/schema/msms_analysis3.dtd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/msms_analysis3.dtd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_std.xsl /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_std.xsl cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v110.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v110.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v111.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v111.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v112.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v112.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v113.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v113.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v114.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v114.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v115.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v115.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v116.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v116.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v117.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v117.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v118.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v118.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v119.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v119.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v120.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v120.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v121.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v121.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v122.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v122.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v18.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v18.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v19.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v19.xsd cp /builddir/build/BUILD/release_6-0-0/schema/pepXML_v9.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/pepXML_v9.xsd cp /builddir/build/BUILD/release_6-0-0/schema/protXML_v1.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/protXML_v1.xsd cp /builddir/build/BUILD/release_6-0-0/schema/protXML_v3.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/protXML_v3.xsd cp /builddir/build/BUILD/release_6-0-0/schema/protXML_v4.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/protXML_v4.xsd cp /builddir/build/BUILD/release_6-0-0/schema/protXML_v5.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/protXML_v5.xsd cp /builddir/build/BUILD/release_6-0-0/schema/protXML_v6.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/protXML_v6.xsd cp /builddir/build/BUILD/release_6-0-0/schema/protXML_v7.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/protXML_v7.xsd cp /builddir/build/BUILD/release_6-0-0/schema/protXML_v8.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/protXML_v8.xsd cp /builddir/build/BUILD/release_6-0-0/schema/protXML_v9.xsd /builddir/build/BUILD/release_6-0-0/build/linux-x86_64-rc28/schema/protXML_v9.xsd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.S0ZN49 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64 ++ dirname /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64 + cd release_6-0-0 ============= install bin ========== + echo '============= install bin ==========' + mkdir -p /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64/usr/bin + install -m 755 build/linux-x86_64-rc28/bin/spectrast /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64/usr/bin + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: trans-proteomic-pipeline-6.0.0-1.fc36.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XU2Ouh + umask 022 + cd /builddir/build/BUILD + cd release_6-0-0 + LICENSEDIR=/builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64/usr/share/licenses/trans-proteomic-pipeline + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64/usr/share/licenses/trans-proteomic-pipeline + cp -pr installer_win32/license.txt /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64/usr/share/licenses/trans-proteomic-pipeline + RPM_EC=0 ++ jobs -p + exit 0 Provides: trans-proteomic-pipeline = 6.0.0-1.fc36 trans-proteomic-pipeline(x86-64) = 6.0.0-1.fc36 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.34.9000-34.fc36 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0)(64bit) libz.so.1(ZLIB_1.2.2.4)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) rtld(GNU_HASH) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64 Wrote: /builddir/build/RPMS/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.8pBYNa + umask 022 + cd /builddir/build/BUILD + cd release_6-0-0 + rm -rf /builddir/build/BUILDROOT/trans-proteomic-pipeline-6.0.0-1.fc36.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0