Warning: Permanently added '172.25.94.154' (ECDSA) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 742937 --chroot fedora-rawhide-x86_64 --detached Version: 0.17 Task: {'build_id': 742937, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fetch_sources_only': True, 'git_hash': 'ce9bfe02ef55e54a837325ad4f6c60e387b945fc', 'git_repo': 'eyusupov/fem/dolfin', 'memory_reqs': 2048, 'package_name': 'dolfin', 'package_version': '2017.2.0-1.fc27', 'project_name': 'fem', 'project_owner': 'eyusupov', 'repos': [{'id': 'copr_base', 'name': 'Copr repository', 'url': 'https://copr-be.cloud.fedoraproject.org/results/eyusupov/fem/fedora-rawhide-x86_64/'}], 'source_json': {'clone_url': 'http://copr-dist-git.fedorainfracloud.org/git/eyusupov/fem/dolfin.git', 'committish': 'ce9bfe02ef55e54a837325ad4f6c60e387b945fc'}, 'source_type': 8, 'submitter': 'eyusupov', 'task_id': '742937-fedora-rawhide-x86_64', 'timeout': 64800, 'use_bootstrap_container': False} Running: git clone http://copr-dist-git.fedorainfracloud.org/git/eyusupov/fem/dolfin.git /tmp/tmpbbry_5wf/dolfin --depth 500 --no-single-branch cmd: ['git', 'clone', 'http://copr-dist-git.fedorainfracloud.org/git/eyusupov/fem/dolfin.git', '/tmp/tmpbbry_5wf/dolfin', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/tmp/tmpbbry_5wf/dolfin'... Running: git checkout ce9bfe02ef55e54a837325ad4f6c60e387b945fc cmd: ['git', 'checkout', 'ce9bfe02ef55e54a837325ad4f6c60e387b945fc'] cwd: /tmp/tmpbbry_5wf/dolfin rc: 0 stdout: stderr: Note: checking out 'ce9bfe02ef55e54a837325ad4f6c60e387b945fc'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at ce9bfe0... automatic import of dolfin 2017.2.0-1.fc27 Running: cp -r . /tmp/tmp4qxs4mkg cmd: ['cp', '-r', '.', '/tmp/tmp4qxs4mkg'] cwd: /tmp/tmpbbry_5wf/dolfin rc: 0 stdout: stderr: Generated rpkg config: [distgit] lookaside = http://copr-dist-git.fedorainfracloud.org/repo/pkgs/%(ns2)s/%(ns1)s/%(pkg)s/%(filename)s/%(hashtype)s/%(hash)s/%(filename)s anongiturl = http://copr-dist-git.fedorainfracloud.org/git/%(module)s Running: rpkg -C /tmp/tmpbbry_5wf/rpkg.conf sources --outdir /tmp/tmp4qxs4mkg cmd: ['rpkg', '-C', '/tmp/tmpbbry_5wf/rpkg.conf', 'sources', '--outdir', '/tmp/tmp4qxs4mkg'] cwd: /tmp/tmpbbry_5wf/dolfin rc: 0 stdout: Downloading dolfin-2017.2.0.tar.gz stderr: {'task_id': '742937-fedora-rawhide-x86_64', 'chroot': 'fedora-rawhide-x86_64', 'buildroot_pkgs': [], 'enable_net': False, 'repos': [{'id': 'copr_base', 'name': 'Copr repository', 'url': 'https://copr-be.cloud.fedoraproject.org/results/eyusupov/fem/fedora-rawhide-x86_64/'}], 'use_bootstrap_container': False, 'pkg_manager_conf': 'yum', 'timeout': 64800, 'sourcedir': '/tmp/tmp4qxs4mkg', 'resultdir': '/var/lib/copr-rpmbuild/results', 'config': , 'logfile': '/var/lib/copr-rpmbuild/main.log'} /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running: unbuffer /usr/bin/mock --buildsrpm --spec /tmp/tmp4qxs4mkg/dolfin.spec --sources /tmp/tmp4qxs4mkg --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --define %_disable_source_fetch 0 --uniqueext 1524142114.640991 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.9 starting (python version = 3.6.3)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/tmp/tmp4qxs4mkg/dolfin.spec) Config(742937-fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/742937-fedora-rawhide-x86_64-1524142114.640991/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled HW Info plugin Mock Version: 1.4.9 INFO: Mock Version: 1.4.9 Start: dnf install 'Copr repository' 151 kB/s | 25 kB 00:00 fedora 14 MB/s | 61 MB 00:04 Last metadata expiration check: 0:00:00 ago on Thu 19 Apr 2018 12:48:37 PM UTC. Dependencies resolved. ================================================================================ Group Packages ================================================================================ Marking packages as installed by the group: @Buildsystem building group findutils coreutils shadow-utils gcc rpm-build gcc-c++ bzip2 patch redhat-rpm-config util-linux tar fedora-release sed xz make gawk grep cpio diffutils gzip bash info unzip which ================================================================================ Package Arch Version Repository Size ================================================================================ Installing group packages: bash x86_64 4.4.19-2.fc29 fedora 1.5 M bzip2 x86_64 1.0.6-27.fc29 fedora 59 k coreutils x86_64 8.29-9.fc29 fedora 1.2 M cpio x86_64 2.12-8.fc29 fedora 264 k diffutils x86_64 3.6-4.fc28 fedora 357 k fedora-release noarch 29-0.2 fedora 26 k findutils x86_64 1:4.6.0-18.fc29 fedora 526 k gawk x86_64 4.2.1-1.fc29 fedora 1.1 M gcc x86_64 8.0.1-0.21.fc29 fedora 23 M gcc-c++ x86_64 8.0.1-0.21.fc29 fedora 12 M grep x86_64 3.1-5.fc28 fedora 273 k gzip x86_64 1.9-5.fc29 fedora 164 k info x86_64 6.5-4.fc29 fedora 197 k make x86_64 1:4.2.1-8.fc29 fedora 497 k patch x86_64 2.7.6-3.fc28 fedora 136 k redhat-rpm-config noarch 106-1.fc29 fedora 77 k rpm-build x86_64 4.14.1-8.fc28 fedora 162 k sed x86_64 4.5-1.fc29 fedora 297 k shadow-utils x86_64 2:4.5-9.fc28 fedora 1.2 M tar x86_64 2:1.30-3.fc28 fedora 837 k unzip x86_64 6.0-39.fc29 fedora 191 k util-linux x86_64 2.32-4.fc29 fedora 2.5 M which x86_64 2.21-8.fc28 fedora 47 k xz x86_64 5.2.3-7.fc28 fedora 151 k Installing dependencies: acl x86_64 2.2.52-21.fc29 fedora 80 k annobin x86_64 5.2-1.fc29 fedora 68 k audit-libs x86_64 2.8.3-3.fc29 fedora 114 k basesystem noarch 11-5.fc28 fedora 9.4 k binutils x86_64 2.30-14.fc29 fedora 6.1 M bzip2-libs x86_64 1.0.6-27.fc29 fedora 47 k ca-certificates noarch 2018.2.22-4.fc29 fedora 398 k chkconfig x86_64 1.10-4.fc28 fedora 187 k coreutils-common x86_64 8.29-9.fc29 fedora 2.0 M cpp x86_64 8.0.1-0.21.fc29 fedora 9.9 M cracklib x86_64 2.9.6-13.fc29 fedora 88 k crypto-policies noarch 20180306-1.gitaea6928.fc29 fedora 39 k cryptsetup-libs x86_64 2.0.2-2.fc29 fedora 321 k curl x86_64 7.59.0-3.fc29 fedora 343 k cyrus-sasl-lib x86_64 2.1.27-0.1rc7.fc29 fedora 121 k dbus x86_64 1:1.12.0-1.fc28 fedora 266 k dbus-libs x86_64 1:1.12.0-1.fc28 fedora 178 k device-mapper x86_64 1.02.146-5.fc29 fedora 365 k device-mapper-libs x86_64 1.02.146-5.fc29 fedora 396 k dwz x86_64 0.12-7.fc29 fedora 107 k elfutils x86_64 0.170-11.fc29 fedora 317 k elfutils-default-yama-scope noarch 0.170-11.fc29 fedora 41 k elfutils-libelf x86_64 0.170-11.fc29 fedora 206 k elfutils-libs x86_64 0.170-11.fc29 fedora 289 k expat x86_64 2.2.5-3.fc28 fedora 109 k fedora-gpg-keys noarch 29-0.4 fedora 95 k fedora-repos noarch 29-0.4 fedora 8.5 k fedora-repos-rawhide noarch 29-0.4 fedora 7.9 k file x86_64 5.33-1.fc29 fedora 73 k file-libs x86_64 5.33-1.fc29 fedora 540 k filesystem x86_64 3.8-3.fc28 fedora 1.1 M fpc-srpm-macros noarch 1.1-4.fc28 fedora 7.5 k gc x86_64 7.6.4-3.fc29 fedora 108 k gdb-headless x86_64 8.1-14.fc29 fedora 3.6 M gdbm x86_64 1:1.14.1-4.fc29 fedora 121 k gdbm-libs x86_64 1:1.14.1-4.fc29 fedora 57 k ghc-srpm-macros noarch 1.4.2-7.fc28 fedora 8.2 k glib2 x86_64 2.56.1-1.fc29 fedora 2.5 M glibc x86_64 2.27.9000-14.fc29 fedora 3.6 M glibc-all-langpacks x86_64 2.27.9000-14.fc29 fedora 24 M glibc-common x86_64 2.27.9000-14.fc29 fedora 784 k glibc-devel x86_64 2.27.9000-14.fc29 fedora 1.0 M glibc-headers x86_64 2.27.9000-14.fc29 fedora 449 k gmp x86_64 1:6.1.2-7.fc28 fedora 285 k gnat-srpm-macros noarch 4-5.fc28 fedora 8.8 k go-srpm-macros noarch 2-16.fc29 fedora 11 k guile x86_64 5:2.0.14-7.fc29 fedora 3.5 M iptables-libs x86_64 1.6.2-2.fc29 fedora 92 k isl x86_64 0.16.1-6.fc28 fedora 841 k json-c x86_64 0.13.1-1.fc29 fedora 39 k kernel-headers x86_64 4.17.0-0.rc1.git1.1.fc29 fedora 1.2 M keyutils-libs x86_64 1.5.10-6.fc28 fedora 33 k kmod-libs x86_64 25-2.fc28 fedora 64 k krb5-libs x86_64 1.16-22.fc29 fedora 841 k libacl x86_64 2.2.52-21.fc29 fedora 34 k libarchive x86_64 3.3.2-1.fc29 fedora 356 k libargon2 x86_64 20161029-5.fc29 fedora 28 k libatomic_ops x86_64 7.6.4-1.fc29 fedora 37 k libattr x86_64 2.4.47-23.fc28 fedora 25 k libbabeltrace x86_64 1.5.5-1.fc29 fedora 199 k libblkid x86_64 2.32-4.fc29 fedora 211 k libcap x86_64 2.25-10.fc29 fedora 55 k libcap-ng x86_64 0.7.9-1.fc28 fedora 31 k libcom_err x86_64 1.44.1-1.fc29 fedora 47 k libcurl x86_64 7.59.0-3.fc29 fedora 288 k libdb x86_64 5.3.28-30.fc28 fedora 757 k libdb-utils x86_64 5.3.28-30.fc28 fedora 147 k libfdisk x86_64 2.32-4.fc29 fedora 259 k libffi x86_64 3.1-16.fc28 fedora 35 k libgcc x86_64 8.0.1-0.21.fc29 fedora 89 k libgcrypt x86_64 1.8.2-2.fc28 fedora 456 k libgomp x86_64 8.0.1-0.21.fc29 fedora 202 k libgpg-error x86_64 1.29-1.fc29 fedora 235 k libidn2 x86_64 2.0.4-7.fc29 fedora 73 k libipt x86_64 1.6.1-8.fc29 fedora 49 k libmetalink x86_64 0.1.3-6.fc28 fedora 31 k libmount x86_64 2.32-4.fc29 fedora 231 k libmpc x86_64 1.1.0-1.fc29 fedora 60 k libnghttp2 x86_64 1.31.1-1.fc29 fedora 74 k libnsl2 x86_64 1.2.0-1.fc28 fedora 56 k libpcap x86_64 14:1.8.1-9.fc28 fedora 152 k libpkgconf x86_64 1.4.2-1.fc29 fedora 34 k libpsl x86_64 0.20.1-1.fc29 fedora 59 k libpwquality x86_64 1.4.0-7.fc29 fedora 101 k libseccomp x86_64 2.3.3-2.fc28 fedora 62 k libselinux x86_64 2.7-13.fc29 fedora 176 k libsemanage x86_64 2.7-12.fc29 fedora 159 k libsepol x86_64 2.7-6.fc29 fedora 335 k libsigsegv x86_64 2.11-5.fc28 fedora 29 k libsmartcols x86_64 2.32-4.fc29 fedora 172 k libssh x86_64 0.7.5-8.fc29 fedora 203 k libstdc++ x86_64 8.0.1-0.21.fc29 fedora 482 k libstdc++-devel x86_64 8.0.1-0.21.fc29 fedora 2.0 M libtasn1 x86_64 4.13-2.fc28 fedora 75 k libtirpc x86_64 1.0.3-1.fc29 fedora 110 k libtool-ltdl x86_64 2.4.6-23.fc29 fedora 57 k libunistring x86_64 0.9.9-1.fc29 fedora 421 k libutempter x86_64 1.1.6-14.fc29 fedora 31 k libuuid x86_64 2.32-4.fc29 fedora 90 k libverto x86_64 0.3.0-5.fc28 fedora 23 k libxcrypt x86_64 4.0.0-5.fc28 fedora 77 k libxcrypt-devel x86_64 4.0.0-5.fc28 fedora 15 k libxml2 x86_64 2.9.8-1.fc29 fedora 693 k libzstd x86_64 1.3.4-1.fc29 fedora 230 k lua-libs x86_64 5.3.4-10.fc28 fedora 117 k lz4-libs x86_64 1.8.1.2-4.fc28 fedora 54 k mpfr x86_64 3.1.6-1.fc29 fedora 220 k ncurses x86_64 6.1-4.20180224.fc29 fedora 377 k ncurses-base noarch 6.1-4.20180224.fc29 fedora 80 k ncurses-libs x86_64 6.1-4.20180224.fc29 fedora 334 k nim-srpm-macros noarch 1-1.fc28 fedora 7.6 k ocaml-srpm-macros noarch 5-2.fc27 fedora 7.8 k openblas-srpm-macros noarch 2-2.fc27 fedora 6.6 k openldap x86_64 2.4.46-1.fc29 fedora 349 k openssl-libs x86_64 1:1.1.0h-3.fc29 fedora 1.3 M p11-kit x86_64 0.23.10-1.fc29 fedora 270 k p11-kit-trust x86_64 0.23.10-1.fc29 fedora 137 k pam x86_64 1.3.0-10.fc28 fedora 756 k pcre x86_64 8.42-1.fc29 fedora 207 k pcre2 x86_64 10.31-4.fc29 fedora 235 k perl-srpm-macros noarch 1-25.fc28 fedora 9.7 k pkgconf x86_64 1.4.2-1.fc29 fedora 37 k pkgconf-m4 noarch 1.4.2-1.fc29 fedora 16 k pkgconf-pkg-config x86_64 1.4.2-1.fc29 fedora 14 k popt x86_64 1.16-14.fc28 fedora 60 k publicsuffix-list-dafsa noarch 20180328-1.fc29 fedora 54 k python-srpm-macros noarch 3-28.fc29 fedora 11 k python3-libs x86_64 3.6.5-1.fc29 fedora 7.8 M qrencode-libs x86_64 3.4.4-5.fc28 fedora 58 k qt5-srpm-macros noarch 5.10.1-1.fc29 fedora 9.6 k readline x86_64 7.0-10.fc29 fedora 198 k rpm x86_64 4.14.1-8.fc28 fedora 532 k rpm-build-libs x86_64 4.14.1-8.fc28 fedora 138 k rpm-libs x86_64 4.14.1-8.fc28 fedora 328 k rpm-plugin-selinux x86_64 4.14.1-8.fc28 fedora 68 k rust-srpm-macros noarch 5-2.fc28 fedora 8.1 k setup noarch 2.11.4-1.fc29 fedora 177 k sqlite-libs x86_64 3.22.0-4.fc29 fedora 546 k systemd x86_64 238-7.fc29 fedora 3.7 M systemd-libs x86_64 238-7.fc29 fedora 507 k systemd-pam x86_64 238-7.fc29 fedora 203 k tzdata noarch 2018d-1.fc29 fedora 457 k xz-libs x86_64 5.2.3-7.fc28 fedora 92 k zip x86_64 3.0-22.fc29 fedora 268 k zlib x86_64 1.2.11-7.fc29 fedora 100 k zstd x86_64 1.3.4-1.fc29 fedora 333 k Transaction Summary ================================================================================ Install 170 Packages Total download size: 143 M Installed size: 568 M Downloading Packages: (1/170): gawk-4.2.1-1.fc29.x86_64.rpm 5.5 MB/s | 1.1 MB 00:00 (2/170): util-linux-2.32-4.fc29.x86_64.rpm 7.3 MB/s | 2.5 MB 00:00 (3/170): shadow-utils-4.5-9.fc28.x86_64.rpm 10 MB/s | 1.2 MB 00:00 (4/170): diffutils-3.6-4.fc28.x86_64.rpm 9.0 MB/s | 357 kB 00:00 (5/170): gzip-1.9-5.fc29.x86_64.rpm 10 MB/s | 164 kB 00:00 (6/170): make-4.2.1-8.fc29.x86_64.rpm 8.5 MB/s | 497 kB 00:00 (7/170): bash-4.4.19-2.fc29.x86_64.rpm 9.6 MB/s | 1.5 MB 00:00 (8/170): redhat-rpm-config-106-1.fc29.noarch.rp 3.4 MB/s | 77 kB 00:00 (9/170): findutils-4.6.0-18.fc29.x86_64.rpm 9.5 MB/s | 526 kB 00:00 (10/170): fedora-release-29-0.2.noarch.rpm 1.7 MB/s | 26 kB 00:00 (11/170): sed-4.5-1.fc29.x86_64.rpm 7.6 MB/s | 297 kB 00:00 (12/170): rpm-build-4.14.1-8.fc28.x86_64.rpm 9.8 MB/s | 162 kB 00:00 (13/170): grep-3.1-5.fc28.x86_64.rpm 10 MB/s | 273 kB 00:00 (14/170): which-2.21-8.fc28.x86_64.rpm 1.9 MB/s | 47 kB 00:00 (15/170): patch-2.7.6-3.fc28.x86_64.rpm 6.4 MB/s | 136 kB 00:00 (16/170): tar-1.30-3.fc28.x86_64.rpm 9.7 MB/s | 837 kB 00:00 (17/170): info-6.5-4.fc29.x86_64.rpm 8.4 MB/s | 197 kB 00:00 (18/170): gcc-c++-8.0.1-0.21.fc29.x86_64.rpm 10 MB/s | 12 MB 00:01 (19/170): unzip-6.0-39.fc29.x86_64.rpm 2.4 MB/s | 191 kB 00:00 (20/170): cpio-2.12-8.fc29.x86_64.rpm 6.7 MB/s | 264 kB 00:00 (21/170): xz-5.2.3-7.fc28.x86_64.rpm 5.6 MB/s | 151 kB 00:00 (22/170): bzip2-1.0.6-27.fc29.x86_64.rpm 2.9 MB/s | 59 kB 00:00 (23/170): coreutils-8.29-9.fc29.x86_64.rpm 9.7 MB/s | 1.2 MB 00:00 (24/170): filesystem-3.8-3.fc28.x86_64.rpm 10 MB/s | 1.1 MB 00:00 (25/170): gmp-6.1.2-7.fc28.x86_64.rpm 8.5 MB/s | 285 kB 00:00 (26/170): libsigsegv-2.11-5.fc28.x86_64.rpm 1.7 MB/s | 29 kB 00:00 (27/170): mpfr-3.1.6-1.fc29.x86_64.rpm 11 MB/s | 220 kB 00:00 (28/170): readline-7.0-10.fc29.x86_64.rpm 12 MB/s | 198 kB 00:00 (29/170): libmpc-1.1.0-1.fc29.x86_64.rpm 3.3 MB/s | 60 kB 00:00 (30/170): libstdc++-8.0.1-0.21.fc29.x86_64.rpm 9.3 MB/s | 482 kB 00:00 (31/170): zlib-1.2.11-7.fc29.x86_64.rpm 4.6 MB/s | 100 kB 00:00 (32/170): audit-libs-2.8.3-3.fc29.x86_64.rpm 6.7 MB/s | 114 kB 00:00 (33/170): libblkid-2.32-4.fc29.x86_64.rpm 8.1 MB/s | 211 kB 00:00 (34/170): libcap-ng-0.7.9-1.fc28.x86_64.rpm 2.2 MB/s | 31 kB 00:00 (35/170): glibc-2.27.9000-14.fc29.x86_64.rpm 10 MB/s | 3.6 MB 00:00 (36/170): libfdisk-2.32-4.fc29.x86_64.rpm 4.9 MB/s | 259 kB 00:00 (37/170): libselinux-2.7-13.fc29.x86_64.rpm 6.8 MB/s | 176 kB 00:00 (38/170): libmount-2.32-4.fc29.x86_64.rpm 6.4 MB/s | 231 kB 00:00 (39/170): libsmartcols-2.32-4.fc29.x86_64.rpm 7.0 MB/s | 172 kB 00:00 (40/170): libutempter-1.1.6-14.fc29.x86_64.rpm 1.0 MB/s | 31 kB 00:00 (41/170): libuuid-2.32-4.fc29.x86_64.rpm 5.2 MB/s | 90 kB 00:00 (42/170): libxcrypt-4.0.0-5.fc28.x86_64.rpm 4.3 MB/s | 77 kB 00:00 (43/170): ncurses-libs-6.1-4.20180224.fc29.x86_ 7.8 MB/s | 334 kB 00:00 (44/170): pam-1.3.0-10.fc28.x86_64.rpm 9.2 MB/s | 756 kB 00:00 (45/170): systemd-libs-238-7.fc29.x86_64.rpm 9.5 MB/s | 507 kB 00:00 (46/170): gcc-8.0.1-0.21.fc29.x86_64.rpm 12 MB/s | 23 MB 00:01 (47/170): isl-0.16.1-6.fc28.x86_64.rpm 13 MB/s | 841 kB 00:00 (48/170): libgcc-8.0.1-0.21.fc29.x86_64.rpm 5.1 MB/s | 89 kB 00:00 (49/170): libgomp-8.0.1-0.21.fc29.x86_64.rpm 9.7 MB/s | 202 kB 00:00 (50/170): libacl-2.2.52-21.fc29.x86_64.rpm 2.0 MB/s | 34 kB 00:00 (51/170): libattr-2.4.47-23.fc28.x86_64.rpm 1.7 MB/s | 25 kB 00:00 (52/170): libsemanage-2.7-12.fc29.x86_64.rpm 5.0 MB/s | 159 kB 00:00 (53/170): setup-2.11.4-1.fc29.noarch.rpm 6.7 MB/s | 177 kB 00:00 (54/170): binutils-2.30-14.fc29.x86_64.rpm 8.6 MB/s | 6.1 MB 00:00 (55/170): cpp-8.0.1-0.21.fc29.x86_64.rpm 13 MB/s | 9.9 MB 00:00 (56/170): annobin-5.2-1.fc29.x86_64.rpm 1.2 MB/s | 68 kB 00:00 (57/170): guile-2.0.14-7.fc29.x86_64.rpm 14 MB/s | 3.5 MB 00:00 (58/170): file-5.33-1.fc29.x86_64.rpm 3.1 MB/s | 73 kB 00:00 (59/170): dwz-0.12-7.fc29.x86_64.rpm 4.1 MB/s | 107 kB 00:00 (60/170): fpc-srpm-macros-1.1-4.fc28.noarch.rpm 721 kB/s | 7.5 kB 00:00 (61/170): ghc-srpm-macros-1.4.2-7.fc28.noarch.r 967 kB/s | 8.2 kB 00:00 (62/170): gnat-srpm-macros-4-5.fc28.noarch.rpm 607 kB/s | 8.8 kB 00:00 (63/170): go-srpm-macros-2-16.fc29.noarch.rpm 597 kB/s | 11 kB 00:00 (64/170): nim-srpm-macros-1-1.fc28.noarch.rpm 398 kB/s | 7.6 kB 00:00 (65/170): ocaml-srpm-macros-5-2.fc27.noarch.rpm 296 kB/s | 7.8 kB 00:00 (66/170): openblas-srpm-macros-2-2.fc27.noarch. 303 kB/s | 6.6 kB 00:00 (67/170): perl-srpm-macros-1-25.fc28.noarch.rpm 422 kB/s | 9.7 kB 00:00 (68/170): python-srpm-macros-3-28.fc29.noarch.r 367 kB/s | 11 kB 00:00 (69/170): qt5-srpm-macros-5.10.1-1.fc29.noarch. 442 kB/s | 9.6 kB 00:00 (70/170): rust-srpm-macros-5-2.fc28.noarch.rpm 847 kB/s | 8.1 kB 00:00 (71/170): fedora-repos-29-0.4.noarch.rpm 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MB/s | 143 MB 00:05 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.8-3.fc28.x86_64 1/1 Preparing : 1/1 Installing : libgcc-8.0.1-0.21.fc29.x86_64 1/170 Running scriptlet: libgcc-8.0.1-0.21.fc29.x86_64 1/170 Installing : publicsuffix-list-dafsa-20180328-1.fc29.noarch 2/170 Installing : kernel-headers-4.17.0-0.rc1.git1.1.fc29.x86_64 3/170 Installing : pkgconf-m4-1.4.2-1.fc29.noarch 4/170 Installing : tzdata-2018d-1.fc29.noarch 5/170 Installing : fedora-gpg-keys-29-0.4.noarch 6/170 Installing : fedora-repos-rawhide-29-0.4.noarch 7/170 Installing : fedora-repos-29-0.4.noarch 8/170 Installing : fedora-release-29-0.2.noarch 9/170 Running scriptlet: fedora-release-29-0.2.noarch 9/170 Installing : setup-2.11.4-1.fc29.noarch 10/170 Running scriptlet: setup-2.11.4-1.fc29.noarch 10/170 warning: /etc/hosts created as /etc/hosts.rpmnew Installing : filesystem-3.8-3.fc28.x86_64 11/170 Installing : basesystem-11-5.fc28.noarch 12/170 Installing : ncurses-base-6.1-4.20180224.fc29.noarch 13/170 Installing : 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libipt-1.6.1-8.fc29.x86_64 115/170 Verifying : python3-libs-3.6.5-1.fc29.x86_64 116/170 Verifying : ca-certificates-2018.2.22-4.fc29.noarch 117/170 Verifying : crypto-policies-20180306-1.gitaea6928.fc29.noarc 118/170 Verifying : rpm-plugin-selinux-4.14.1-8.fc28.x86_64 119/170 Verifying : tzdata-2018d-1.fc29.noarch 120/170 Verifying : krb5-libs-1.16-22.fc29.x86_64 121/170 Verifying : libcom_err-1.44.1-1.fc29.x86_64 122/170 Verifying : libgpg-error-1.29-1.fc29.x86_64 123/170 Verifying : libatomic_ops-7.6.4-1.fc29.x86_64 124/170 Verifying : libxml2-2.9.8-1.fc29.x86_64 125/170 Verifying : glib2-2.56.1-1.fc29.x86_64 126/170 Verifying : gdbm-1:1.14.1-4.fc29.x86_64 127/170 Verifying : gdbm-libs-1:1.14.1-4.fc29.x86_64 128/170 Verifying : sqlite-libs-3.22.0-4.fc29.x86_64 129/170 Verifying : keyutils-libs-1.5.10-6.fc28.x86_64 130/170 Verifying : libverto-0.3.0-5.fc28.x86_64 131/170 Verifying : pkgconf-pkg-config-1.4.2-1.fc29.x86_64 132/170 Verifying : pkgconf-1.4.2-1.fc29.x86_64 133/170 Verifying : pkgconf-m4-1.4.2-1.fc29.noarch 134/170 Verifying : libpkgconf-1.4.2-1.fc29.x86_64 135/170 Verifying : libpwquality-1.4.0-7.fc29.x86_64 136/170 Verifying : libstdc++-devel-8.0.1-0.21.fc29.x86_64 137/170 Verifying : glibc-devel-2.27.9000-14.fc29.x86_64 138/170 Verifying : libxcrypt-devel-4.0.0-5.fc28.x86_64 139/170 Verifying : glibc-headers-2.27.9000-14.fc29.x86_64 140/170 Verifying : kernel-headers-4.17.0-0.rc1.git1.1.fc29.x86_64 141/170 Verifying : systemd-238-7.fc29.x86_64 142/170 Verifying : acl-2.2.52-21.fc29.x86_64 143/170 Verifying : cryptsetup-libs-2.0.2-2.fc29.x86_64 144/170 Verifying : iptables-libs-1.6.2-2.fc29.x86_64 145/170 Verifying : kmod-libs-25-2.fc28.x86_64 146/170 Verifying : libidn2-2.0.4-7.fc29.x86_64 147/170 Verifying : libseccomp-2.3.3-2.fc28.x86_64 148/170 Verifying : qrencode-libs-3.4.4-5.fc28.x86_64 149/170 Verifying : systemd-pam-238-7.fc29.x86_64 150/170 Verifying : device-mapper-libs-1.02.146-5.fc29.x86_64 151/170 Verifying : json-c-0.13.1-1.fc29.x86_64 152/170 Verifying : libargon2-20161029-5.fc29.x86_64 153/170 Verifying : libpcap-14:1.8.1-9.fc28.x86_64 154/170 Verifying : device-mapper-1.02.146-5.fc29.x86_64 155/170 Verifying : p11-kit-0.23.10-1.fc29.x86_64 156/170 Verifying : p11-kit-trust-0.23.10-1.fc29.x86_64 157/170 Verifying : libtasn1-4.13-2.fc28.x86_64 158/170 Verifying : dbus-1:1.12.0-1.fc28.x86_64 159/170 Verifying : dbus-libs-1:1.12.0-1.fc28.x86_64 160/170 Verifying : curl-7.59.0-3.fc29.x86_64 161/170 Verifying : libmetalink-0.1.3-6.fc28.x86_64 162/170 Verifying : glibc-all-langpacks-2.27.9000-14.fc29.x86_64 163/170 Verifying : libcurl-7.59.0-3.fc29.x86_64 164/170 Verifying : libnghttp2-1.31.1-1.fc29.x86_64 165/170 Verifying : libpsl-0.20.1-1.fc29.x86_64 166/170 Verifying : libssh-0.7.5-8.fc29.x86_64 167/170 Verifying : openldap-2.4.46-1.fc29.x86_64 168/170 Verifying : publicsuffix-list-dafsa-20180328-1.fc29.noarch 169/170 Verifying : cyrus-sasl-lib-2.1.27-0.1rc7.fc29.x86_64 170/170 Installed: bash.x86_64 4.4.19-2.fc29 bzip2.x86_64 1.0.6-27.fc29 coreutils.x86_64 8.29-9.fc29 cpio.x86_64 2.12-8.fc29 diffutils.x86_64 3.6-4.fc28 fedora-release.noarch 29-0.2 findutils.x86_64 1:4.6.0-18.fc29 gawk.x86_64 4.2.1-1.fc29 gcc.x86_64 8.0.1-0.21.fc29 gcc-c++.x86_64 8.0.1-0.21.fc29 grep.x86_64 3.1-5.fc28 gzip.x86_64 1.9-5.fc29 info.x86_64 6.5-4.fc29 make.x86_64 1:4.2.1-8.fc29 patch.x86_64 2.7.6-3.fc28 redhat-rpm-config.noarch 106-1.fc29 rpm-build.x86_64 4.14.1-8.fc28 sed.x86_64 4.5-1.fc29 shadow-utils.x86_64 2:4.5-9.fc28 tar.x86_64 2:1.30-3.fc28 unzip.x86_64 6.0-39.fc29 util-linux.x86_64 2.32-4.fc29 which.x86_64 2.21-8.fc28 xz.x86_64 5.2.3-7.fc28 acl.x86_64 2.2.52-21.fc29 annobin.x86_64 5.2-1.fc29 audit-libs.x86_64 2.8.3-3.fc29 basesystem.noarch 11-5.fc28 binutils.x86_64 2.30-14.fc29 bzip2-libs.x86_64 1.0.6-27.fc29 ca-certificates.noarch 2018.2.22-4.fc29 chkconfig.x86_64 1.10-4.fc28 coreutils-common.x86_64 8.29-9.fc29 cpp.x86_64 8.0.1-0.21.fc29 cracklib.x86_64 2.9.6-13.fc29 crypto-policies.noarch 20180306-1.gitaea6928.fc29 cryptsetup-libs.x86_64 2.0.2-2.fc29 curl.x86_64 7.59.0-3.fc29 cyrus-sasl-lib.x86_64 2.1.27-0.1rc7.fc29 dbus.x86_64 1:1.12.0-1.fc28 dbus-libs.x86_64 1:1.12.0-1.fc28 device-mapper.x86_64 1.02.146-5.fc29 device-mapper-libs.x86_64 1.02.146-5.fc29 dwz.x86_64 0.12-7.fc29 elfutils.x86_64 0.170-11.fc29 elfutils-default-yama-scope.noarch 0.170-11.fc29 elfutils-libelf.x86_64 0.170-11.fc29 elfutils-libs.x86_64 0.170-11.fc29 expat.x86_64 2.2.5-3.fc28 fedora-gpg-keys.noarch 29-0.4 fedora-repos.noarch 29-0.4 fedora-repos-rawhide.noarch 29-0.4 file.x86_64 5.33-1.fc29 file-libs.x86_64 5.33-1.fc29 filesystem.x86_64 3.8-3.fc28 fpc-srpm-macros.noarch 1.1-4.fc28 gc.x86_64 7.6.4-3.fc29 gdb-headless.x86_64 8.1-14.fc29 gdbm.x86_64 1:1.14.1-4.fc29 gdbm-libs.x86_64 1:1.14.1-4.fc29 ghc-srpm-macros.noarch 1.4.2-7.fc28 glib2.x86_64 2.56.1-1.fc29 glibc.x86_64 2.27.9000-14.fc29 glibc-all-langpacks.x86_64 2.27.9000-14.fc29 glibc-common.x86_64 2.27.9000-14.fc29 glibc-devel.x86_64 2.27.9000-14.fc29 glibc-headers.x86_64 2.27.9000-14.fc29 gmp.x86_64 1:6.1.2-7.fc28 gnat-srpm-macros.noarch 4-5.fc28 go-srpm-macros.noarch 2-16.fc29 guile.x86_64 5:2.0.14-7.fc29 iptables-libs.x86_64 1.6.2-2.fc29 isl.x86_64 0.16.1-6.fc28 json-c.x86_64 0.13.1-1.fc29 kernel-headers.x86_64 4.17.0-0.rc1.git1.1.fc29 keyutils-libs.x86_64 1.5.10-6.fc28 kmod-libs.x86_64 25-2.fc28 krb5-libs.x86_64 1.16-22.fc29 libacl.x86_64 2.2.52-21.fc29 libarchive.x86_64 3.3.2-1.fc29 libargon2.x86_64 20161029-5.fc29 libatomic_ops.x86_64 7.6.4-1.fc29 libattr.x86_64 2.4.47-23.fc28 libbabeltrace.x86_64 1.5.5-1.fc29 libblkid.x86_64 2.32-4.fc29 libcap.x86_64 2.25-10.fc29 libcap-ng.x86_64 0.7.9-1.fc28 libcom_err.x86_64 1.44.1-1.fc29 libcurl.x86_64 7.59.0-3.fc29 libdb.x86_64 5.3.28-30.fc28 libdb-utils.x86_64 5.3.28-30.fc28 libfdisk.x86_64 2.32-4.fc29 libffi.x86_64 3.1-16.fc28 libgcc.x86_64 8.0.1-0.21.fc29 libgcrypt.x86_64 1.8.2-2.fc28 libgomp.x86_64 8.0.1-0.21.fc29 libgpg-error.x86_64 1.29-1.fc29 libidn2.x86_64 2.0.4-7.fc29 libipt.x86_64 1.6.1-8.fc29 libmetalink.x86_64 0.1.3-6.fc28 libmount.x86_64 2.32-4.fc29 libmpc.x86_64 1.1.0-1.fc29 libnghttp2.x86_64 1.31.1-1.fc29 libnsl2.x86_64 1.2.0-1.fc28 libpcap.x86_64 14:1.8.1-9.fc28 libpkgconf.x86_64 1.4.2-1.fc29 libpsl.x86_64 0.20.1-1.fc29 libpwquality.x86_64 1.4.0-7.fc29 libseccomp.x86_64 2.3.3-2.fc28 libselinux.x86_64 2.7-13.fc29 libsemanage.x86_64 2.7-12.fc29 libsepol.x86_64 2.7-6.fc29 libsigsegv.x86_64 2.11-5.fc28 libsmartcols.x86_64 2.32-4.fc29 libssh.x86_64 0.7.5-8.fc29 libstdc++.x86_64 8.0.1-0.21.fc29 libstdc++-devel.x86_64 8.0.1-0.21.fc29 libtasn1.x86_64 4.13-2.fc28 libtirpc.x86_64 1.0.3-1.fc29 libtool-ltdl.x86_64 2.4.6-23.fc29 libunistring.x86_64 0.9.9-1.fc29 libutempter.x86_64 1.1.6-14.fc29 libuuid.x86_64 2.32-4.fc29 libverto.x86_64 0.3.0-5.fc28 libxcrypt.x86_64 4.0.0-5.fc28 libxcrypt-devel.x86_64 4.0.0-5.fc28 libxml2.x86_64 2.9.8-1.fc29 libzstd.x86_64 1.3.4-1.fc29 lua-libs.x86_64 5.3.4-10.fc28 lz4-libs.x86_64 1.8.1.2-4.fc28 mpfr.x86_64 3.1.6-1.fc29 ncurses.x86_64 6.1-4.20180224.fc29 ncurses-base.noarch 6.1-4.20180224.fc29 ncurses-libs.x86_64 6.1-4.20180224.fc29 nim-srpm-macros.noarch 1-1.fc28 ocaml-srpm-macros.noarch 5-2.fc27 openblas-srpm-macros.noarch 2-2.fc27 openldap.x86_64 2.4.46-1.fc29 openssl-libs.x86_64 1:1.1.0h-3.fc29 p11-kit.x86_64 0.23.10-1.fc29 p11-kit-trust.x86_64 0.23.10-1.fc29 pam.x86_64 1.3.0-10.fc28 pcre.x86_64 8.42-1.fc29 pcre2.x86_64 10.31-4.fc29 perl-srpm-macros.noarch 1-25.fc28 pkgconf.x86_64 1.4.2-1.fc29 pkgconf-m4.noarch 1.4.2-1.fc29 pkgconf-pkg-config.x86_64 1.4.2-1.fc29 popt.x86_64 1.16-14.fc28 publicsuffix-list-dafsa.noarch 20180328-1.fc29 python-srpm-macros.noarch 3-28.fc29 python3-libs.x86_64 3.6.5-1.fc29 qrencode-libs.x86_64 3.4.4-5.fc28 qt5-srpm-macros.noarch 5.10.1-1.fc29 readline.x86_64 7.0-10.fc29 rpm.x86_64 4.14.1-8.fc28 rpm-build-libs.x86_64 4.14.1-8.fc28 rpm-libs.x86_64 4.14.1-8.fc28 rpm-plugin-selinux.x86_64 4.14.1-8.fc28 rust-srpm-macros.noarch 5-2.fc28 setup.noarch 2.11.4-1.fc29 sqlite-libs.x86_64 3.22.0-4.fc29 systemd.x86_64 238-7.fc29 systemd-libs.x86_64 238-7.fc29 systemd-pam.x86_64 238-7.fc29 tzdata.noarch 2018d-1.fc29 xz-libs.x86_64 5.2.3-7.fc28 zip.x86_64 3.0-22.fc29 zlib.x86_64 1.2.11-7.fc29 zstd.x86_64 1.3.4-1.fc29 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/dolfin-2017.2.0-1.fc29.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/742937-fedora-rawhide-x86_64-1524142114.640991/root/var/log/dnf.rpm.log /var/lib/mock/742937-fedora-rawhide-x86_64-1524142114.640991/root/var/log/dnf.librepo.log /var/lib/mock/742937-fedora-rawhide-x86_64-1524142114.640991/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/tmp/tmp4qxs4mkg/dolfin.spec) Config(child) 1 minutes 30 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running: unbuffer /usr/bin/mock --rebuild /var/lib/copr-rpmbuild/results/dolfin-2017.2.0-1.fc29.src.rpm --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1524142205.806264 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.9 starting (python version = 3.6.3)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/var/lib/copr-rpmbuild/results/dolfin-2017.2.0-1.fc29.src.rpm) Config(742937-fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/742937-fedora-rawhide-x86_64-1524142205.806264/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled HW Info plugin Mock Version: 1.4.9 INFO: Mock Version: 1.4.9 Start: dnf update 'Copr repository' 297 kB/s | 25 kB 00:00 fedora 32 MB/s | 61 MB 00:01 Last metadata expiration check: 0:00:00 ago on Thu 19 Apr 2018 12:50:12 PM UTC. Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for dolfin-2017.2.0-1.fc29.src.rpm Start: build setup for dolfin-2017.2.0-1.fc29.src.rpm Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/dolfin-2017.2.0-1.fc29.src.rpm Last metadata expiration check: 0:00:00 ago on Thu 19 Apr 2018 12:50:42 PM UTC. Package gcc-c++-8.0.1-0.21.fc29.x86_64 is already installed, skipping. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: boost-devel x86_64 1.66.0-5.fc29 fedora 10 M cmake x86_64 3.11.0-1.fc29 fedora 7.8 M eigen3-devel noarch 3.3.4-5.fc29 fedora 1.0 M hdf5-devel x86_64 1.8.20-3.fc29 fedora 977 k lapack-devel x86_64 3.8.0-8.fc29 fedora 88 k python3-ffc noarch 2017.2.0.post0-1.fc29 copr_base 537 k python3-rpm-macros noarch 3-28.fc29 fedora 10 k sphinx x86_64 2.2.11-7.fc28 fedora 5.1 M suitesparse-devel x86_64 4.4.6-12.fc29 fedora 143 k zlib-devel x86_64 1.2.11-7.fc29 fedora 57 k Installing dependencies: atlas x86_64 3.10.3-5.fc29 fedora 6.4 M blas x86_64 3.8.0-8.fc29 fedora 427 k blas-devel x86_64 3.8.0-8.fc29 fedora 25 k boost x86_64 1.66.0-5.fc29 fedora 50 k boost-atomic x86_64 1.66.0-5.fc29 fedora 52 k boost-chrono x86_64 1.66.0-5.fc29 fedora 61 k boost-container x86_64 1.66.0-5.fc29 fedora 82 k boost-context x86_64 1.66.0-5.fc29 fedora 54 k boost-coroutine x86_64 1.66.0-5.fc29 fedora 70 k boost-date-time x86_64 1.66.0-5.fc29 fedora 68 k boost-fiber x86_64 1.66.0-5.fc29 fedora 164 k boost-filesystem x86_64 1.66.0-5.fc29 fedora 87 k boost-graph x86_64 1.66.0-5.fc29 fedora 151 k boost-iostreams x86_64 1.66.0-5.fc29 fedora 78 k boost-locale x86_64 1.66.0-5.fc29 fedora 304 k boost-log x86_64 1.66.0-5.fc29 fedora 486 k boost-math x86_64 1.66.0-5.fc29 fedora 302 k boost-numpy x86_64 1.66.0-5.fc29 fedora 65 k boost-program-options x86_64 1.66.0-5.fc29 fedora 180 k boost-python2 x86_64 1.66.0-5.fc29 fedora 136 k boost-random x86_64 1.66.0-5.fc29 fedora 60 k boost-regex x86_64 1.66.0-5.fc29 fedora 320 k boost-serialization x86_64 1.66.0-5.fc29 fedora 163 k boost-signals x86_64 1.66.0-5.fc29 fedora 78 k boost-stacktrace x86_64 1.66.0-5.fc29 fedora 74 k boost-system x86_64 1.66.0-5.fc29 fedora 57 k boost-test x86_64 1.66.0-5.fc29 fedora 290 k boost-thread x86_64 1.66.0-5.fc29 fedora 97 k boost-timer x86_64 1.66.0-5.fc29 fedora 59 k boost-type_erasure x86_64 1.66.0-5.fc29 fedora 69 k boost-wave x86_64 1.66.0-5.fc29 fedora 230 k cairo x86_64 1.15.12-1.fc29 fedora 723 k cmake-data noarch 3.11.0-1.fc29 fedora 1.3 M cmake-filesystem x86_64 3.11.0-1.fc29 fedora 38 k cmake-rpm-macros noarch 3.11.0-1.fc29 fedora 38 k dejavu-fonts-common noarch 2.35-6.fc28 fedora 73 k dejavu-sans-fonts noarch 2.35-6.fc28 fedora 1.5 M emacs-filesystem noarch 1:25.3-5.fc28 fedora 67 k fontconfig x86_64 2.13.0-3.fc29 fedora 268 k fontpackages-filesystem noarch 1.44-21.fc29 fedora 15 k freetype x86_64 2.9-1.fc29 fedora 389 k gcc-gfortran x86_64 8.0.1-0.21.fc29 fedora 11 M gd x86_64 2.2.5-3.fc29 fedora 142 k hdf5 x86_64 1.8.20-3.fc29 fedora 1.8 M jbigkit-libs x86_64 2.1-12.fc29 fedora 53 k jsoncpp x86_64 1.8.4-3.fc28 fedora 92 k lapack x86_64 3.8.0-8.fc29 fedora 8.6 M lcms2 x86_64 2.9-2.fc28 fedora 164 k libX11 x86_64 1.6.5-7.fc29 fedora 621 k libX11-common noarch 1.6.5-7.fc29 fedora 167 k libXau x86_64 1.0.8-11.fc28 fedora 34 k libXext x86_64 1.3.3-8.fc28 fedora 44 k libXft x86_64 2.3.2-8.fc28 fedora 65 k libXpm x86_64 3.5.12-5.fc28 fedora 57 k libXrender x86_64 0.9.10-5.fc28 fedora 32 k libaec x86_64 1.0.2-3.fc28 fedora 38 k libaec-devel x86_64 1.0.2-3.fc28 fedora 10 k libgfortran x86_64 8.0.1-0.21.fc29 fedora 650 k libglvnd x86_64 1:1.0.1-0.4.20180327git5baa1e5.fc29 fedora 94 k libglvnd-glx x86_64 1:1.0.1-0.4.20180327git5baa1e5.fc29 fedora 130 k libicu x86_64 60.2-3.fc29 fedora 8.8 M libicu-devel x86_64 60.2-3.fc29 fedora 921 k libimagequant x86_64 2.11.10-1.fc29 fedora 62 k libjpeg-turbo x86_64 1.5.90-1.fc29 fedora 167 k libpng x86_64 2:1.6.34-4.fc28 fedora 125 k libqhull x86_64 2015.2-5.fc28 fedora 167 k libquadmath x86_64 8.0.1-0.21.fc29 fedora 180 k libquadmath-devel x86_64 8.0.1-0.21.fc29 fedora 34 k libtiff x86_64 4.0.9-8.fc29 fedora 178 k libuv x86_64 1:1.20.0-1.fc29 fedora 127 k libwebp x86_64 0.6.1-8.fc29 fedora 266 k libxcb x86_64 1.13-2.fc29 fedora 228 k mariadb-connector-c x86_64 3.0.3-3.fc29 fedora 144 k mesa-libGLU x86_64 9.0.0-14.fc29 fedora 184 k openblas x86_64 0.2.20-10.fc29 fedora 4.4 M openblas-threads x86_64 0.2.20-10.fc29 fedora 4.5 M openjpeg2 x86_64 2.3.0-7.fc29 fedora 153 k pixman x86_64 0.34.0-6.fc28 fedora 253 k postgresql-libs x86_64 10.3-2.fc29 fedora 300 k python-matplotlib-data noarch 2.1.2-2.fc28 fedora 1.8 M python-matplotlib-data-fonts noarch 2.1.2-2.fc28 fedora 2.4 M python2 x86_64 2.7.14-15.fc29 fedora 101 k python2-libs x86_64 2.7.14-15.fc29 fedora 6.3 M python2-nose noarch 1.3.7-19.fc28 fedora 267 k python2-numpy x86_64 1:1.14.2-1.fc29 fedora 3.7 M python2-pip noarch 9.0.3-1.fc29 fedora 2.0 M python2-setuptools noarch 39.0.1-1.fc29 fedora 641 k python3 x86_64 3.6.5-1.fc29 fedora 71 k python3-cairo x86_64 1.16.3-1.fc29 fedora 89 k python3-cycler noarch 0.10.0-6.fc28 fedora 19 k python3-dateutil noarch 1:2.7.0-1.fc29 fedora 272 k python3-dijitso noarch 2017.2.0-0.fc29 copr_base 79 k python3-fastcache x86_64 1.0.2-12.fc28 fedora 28 k python3-fiat noarch 2017.2.0-0.fc29 copr_base 172 k python3-future noarch 0.16.0-8.fc28 fedora 783 k python3-gmpy2 x86_64 2.0.8-7.fc28 fedora 333 k python3-matplotlib x86_64 2.1.2-2.fc28 fedora 3.3 M python3-matplotlib-tk x86_64 2.1.2-2.fc28 fedora 63 k python3-mpmath noarch 0.19-12.fc28 fedora 997 k python3-numpy x86_64 1:1.14.2-1.fc29 fedora 3.7 M python3-olefile noarch 0.45.1-1.fc28 fedora 1.1 M python3-pillow x86_64 5.1.0-1.fc29 fedora 627 k python3-pip noarch 9.0.3-1.fc29 fedora 2.0 M python3-pyglet noarch 1.3.1-1.fc28 fedora 1.3 M python3-pyparsing noarch 2.1.10-7.fc29 fedora 141 k python3-pytz noarch 2017.2-7.fc29 fedora 53 k python3-setuptools noarch 39.0.1-1.fc29 fedora 628 k python3-six noarch 1.11.0-3.fc28 fedora 37 k python3-sympy noarch 1.1.1-4.fc29 fedora 7.6 M python3-tkinter x86_64 3.6.5-1.fc29 fedora 371 k python3-ufl noarch 2017.2.0-0.fc29 copr_base 419 k rhash x86_64 1.3.5-2.fc28 fedora 129 k suitesparse x86_64 4.4.6-12.fc29 fedora 1.0 M tbb x86_64 2018.2-5.fc28 fedora 158 k tcl x86_64 1:8.6.8-1.fc29 fedora 1.1 M texlive-base x86_64 7:20170520-27.fc29 fedora 929 k texlive-dvipng x86_64 7:20170520-27.fc29 fedora 318 k texlive-kpathsea x86_64 7:20170520-27.fc29 fedora 1.1 M texlive-lib x86_64 7:20170520-27.fc29 fedora 428 k tk x86_64 1:8.6.8-1.fc29 fedora 1.6 M Transaction Summary ================================================================================ Install 130 Packages Total download size: 134 M Installed size: 583 M Downloading Packages: (1/130): python3-rpm-macros-3-28.fc29.noarch.rp 89 kB/s | 10 kB 00:00 (2/130): python3-ffc-2017.2.0.post0-1.fc29.noar 4.2 MB/s | 537 kB 00:00 (3/130): eigen3-devel-3.3.4-5.fc29.noarch.rpm 5.2 MB/s | 1.0 MB 00:00 (4/130): sphinx-2.2.11-7.fc28.x86_64.rpm 18 MB/s | 5.1 MB 00:00 (5/130): hdf5-devel-1.8.20-3.fc29.x86_64.rpm 17 MB/s | 977 kB 00:00 (6/130): lapack-devel-3.8.0-8.fc29.x86_64.rpm 5.0 MB/s | 88 kB 00:00 (7/130): 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boost-signals-1.66.0-5.fc29.x86_64.rp 6.8 MB/s | 78 kB 00:00 (36/130): boost-stacktrace-1.66.0-5.fc29.x86_64 4.8 MB/s | 74 kB 00:00 (37/130): boost-system-1.66.0-5.fc29.x86_64.rpm 3.9 MB/s | 57 kB 00:00 (38/130): boost-test-1.66.0-5.fc29.x86_64.rpm 16 MB/s | 290 kB 00:00 (39/130): boost-type_erasure-1.66.0-5.fc29.x86_ 6.1 MB/s | 69 kB 00:00 (40/130): boost-timer-1.66.0-5.fc29.x86_64.rpm 4.1 MB/s | 59 kB 00:00 (41/130): boost-wave-1.66.0-5.fc29.x86_64.rpm 14 MB/s | 230 kB 00:00 (42/130): libquadmath-devel-8.0.1-0.21.fc29.x86 2.7 MB/s | 34 kB 00:00 (43/130): cmake-filesystem-3.11.0-1.fc29.x86_64 4.0 MB/s | 38 kB 00:00 (44/130): cmake-rpm-macros-3.11.0-1.fc29.noarch 3.1 MB/s | 38 kB 00:00 (45/130): libicu-devel-60.2-3.fc29.x86_64.rpm 16 MB/s | 921 kB 00:00 (46/130): jsoncpp-1.8.4-3.fc28.x86_64.rpm 4.3 MB/s | 92 kB 00:00 (47/130): libuv-1.20.0-1.fc29.x86_64.rpm 7.4 MB/s | 127 kB 00:00 (48/130): rhash-1.3.5-2.fc28.x86_64.rpm 5.6 MB/s | 129 kB 00:00 (49/130): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: mariadb-connector-c-3.0.3-3.fc29.x86_64 1/1 Preparing : 1/1 Installing : python3-pip-9.0.3-1.fc29.noarch 1/130 Installing : python3-setuptools-39.0.1-1.fc29.noarch 2/130 Installing : python3-3.6.5-1.fc29.x86_64 3/130 Installing : boost-system-1.66.0-5.fc29.x86_64 4/130 Installing : boost-chrono-1.66.0-5.fc29.x86_64 5/130 Installing : boost-thread-1.66.0-5.fc29.x86_64 6/130 Installing : boost-filesystem-1.66.0-5.fc29.x86_64 7/130 Installing : libpng-2:1.6.34-4.fc28.x86_64 8/130 Installing : freetype-2.9-1.fc29.x86_64 9/130 Installing : libicu-60.2-3.fc29.x86_64 10/130 Running scriptlet: libicu-60.2-3.fc29.x86_64 10/130 Installing : boost-regex-1.66.0-5.fc29.x86_64 11/130 Installing : python2-pip-9.0.3-1.fc29.noarch 12/130 Installing : python2-setuptools-39.0.1-1.fc29.noarch 13/130 Installing : python2-2.7.14-15.fc29.x86_64 14/130 Installing : python2-libs-2.7.14-15.fc29.x86_64 15/130 Installing : boost-date-time-1.66.0-5.fc29.x86_64 16/130 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tbb-2018.2-5.fc28.x86_64 112/130 Running scriptlet: tbb-2018.2-5.fc28.x86_64 112/130 Installing : suitesparse-4.4.6-12.fc29.x86_64 113/130 Running scriptlet: suitesparse-4.4.6-12.fc29.x86_64 113/130 Installing : emacs-filesystem-1:25.3-5.fc28.noarch 114/130 Installing : rhash-1.3.5-2.fc28.x86_64 115/130 Running scriptlet: rhash-1.3.5-2.fc28.x86_64 115/130 Installing : libuv-1:1.20.0-1.fc29.x86_64 116/130 Installing : jsoncpp-1.8.4-3.fc28.x86_64 117/130 Installing : cmake-data-3.11.0-1.fc29.noarch 118/130 Installing : cmake-3.11.0-1.fc29.x86_64 119/130 Installing : postgresql-libs-10.3-2.fc29.x86_64 120/130 Running scriptlet: postgresql-libs-10.3-2.fc29.x86_64 120/130 Installing : mariadb-connector-c-3.0.3-3.fc29.x86_64 121/130 Installing : zlib-devel-1.2.11-7.fc29.x86_64 122/130 Installing : hdf5-devel-1.8.20-3.fc29.x86_64 123/130 Running scriptlet: sphinx-2.2.11-7.fc28.x86_64 124/130 Installing : sphinx-2.2.11-7.fc28.x86_64 124/130 Running scriptlet: sphinx-2.2.11-7.fc28.x86_64 124/130 Installing : suitesparse-devel-4.4.6-12.fc29.x86_64 125/130 Installing : python3-ffc-2017.2.0.post0-1.fc29.noarch 126/130 Installing : boost-devel-1.66.0-5.fc29.x86_64 127/130 Installing : lapack-devel-3.8.0-8.fc29.x86_64 128/130 Installing : python3-rpm-macros-3-28.fc29.noarch 129/130 Installing : eigen3-devel-3.3.4-5.fc29.noarch 130/130 Running scriptlet: texlive-base-7:20170520-27.fc29.x86_64 130/130 Running scriptlet: sphinx-2.2.11-7.fc28.x86_64 130/130 Running scriptlet: eigen3-devel-3.3.4-5.fc29.noarch 130/130 Running scriptlet: texlive-kpathsea-7:20170520-27.fc29.x86_64 130/130 Running scriptlet: fontconfig-2.13.0-3.fc29.x86_64 130/130 Verifying : eigen3-devel-3.3.4-5.fc29.noarch 1/130 Verifying : python3-ffc-2017.2.0.post0-1.fc29.noarch 2/130 Verifying : python3-rpm-macros-3-28.fc29.noarch 3/130 Verifying : sphinx-2.2.11-7.fc28.x86_64 4/130 Verifying : boost-devel-1.66.0-5.fc29.x86_64 5/130 Verifying : cmake-3.11.0-1.fc29.x86_64 6/130 Verifying : hdf5-devel-1.8.20-3.fc29.x86_64 7/130 Verifying : lapack-devel-3.8.0-8.fc29.x86_64 8/130 Verifying : suitesparse-devel-4.4.6-12.fc29.x86_64 9/130 Verifying : zlib-devel-1.2.11-7.fc29.x86_64 10/130 Verifying : python3-dijitso-2017.2.0-0.fc29.noarch 11/130 Verifying : python3-fiat-2017.2.0-0.fc29.noarch 12/130 Verifying : mariadb-connector-c-3.0.3-3.fc29.x86_64 13/130 Verifying : postgresql-libs-10.3-2.fc29.x86_64 14/130 Verifying : boost-1.66.0-5.fc29.x86_64 15/130 Verifying : boost-atomic-1.66.0-5.fc29.x86_64 16/130 Verifying : boost-chrono-1.66.0-5.fc29.x86_64 17/130 Verifying : boost-container-1.66.0-5.fc29.x86_64 18/130 Verifying : boost-context-1.66.0-5.fc29.x86_64 19/130 Verifying : boost-coroutine-1.66.0-5.fc29.x86_64 20/130 Verifying : boost-date-time-1.66.0-5.fc29.x86_64 21/130 Verifying : boost-fiber-1.66.0-5.fc29.x86_64 22/130 Verifying : boost-filesystem-1.66.0-5.fc29.x86_64 23/130 Verifying : boost-graph-1.66.0-5.fc29.x86_64 24/130 Verifying : boost-iostreams-1.66.0-5.fc29.x86_64 25/130 Verifying : boost-locale-1.66.0-5.fc29.x86_64 26/130 Verifying : boost-log-1.66.0-5.fc29.x86_64 27/130 Verifying : boost-math-1.66.0-5.fc29.x86_64 28/130 Verifying : boost-numpy-1.66.0-5.fc29.x86_64 29/130 Verifying : boost-program-options-1.66.0-5.fc29.x86_64 30/130 Verifying : boost-python2-1.66.0-5.fc29.x86_64 31/130 Verifying : boost-random-1.66.0-5.fc29.x86_64 32/130 Verifying : boost-regex-1.66.0-5.fc29.x86_64 33/130 Verifying : boost-serialization-1.66.0-5.fc29.x86_64 34/130 Verifying : boost-signals-1.66.0-5.fc29.x86_64 35/130 Verifying : boost-stacktrace-1.66.0-5.fc29.x86_64 36/130 Verifying : boost-system-1.66.0-5.fc29.x86_64 37/130 Verifying : boost-test-1.66.0-5.fc29.x86_64 38/130 Verifying : boost-timer-1.66.0-5.fc29.x86_64 39/130 Verifying : boost-type_erasure-1.66.0-5.fc29.x86_64 40/130 Verifying : boost-wave-1.66.0-5.fc29.x86_64 41/130 Verifying : libicu-devel-60.2-3.fc29.x86_64 42/130 Verifying : libquadmath-devel-8.0.1-0.21.fc29.x86_64 43/130 Verifying : cmake-data-3.11.0-1.fc29.noarch 44/130 Verifying : cmake-filesystem-3.11.0-1.fc29.x86_64 45/130 Verifying : cmake-rpm-macros-3.11.0-1.fc29.noarch 46/130 Verifying : jsoncpp-1.8.4-3.fc28.x86_64 47/130 Verifying : libuv-1:1.20.0-1.fc29.x86_64 48/130 Verifying : rhash-1.3.5-2.fc28.x86_64 49/130 Verifying : gcc-gfortran-8.0.1-0.21.fc29.x86_64 50/130 Verifying : hdf5-1.8.20-3.fc29.x86_64 51/130 Verifying : libaec-devel-1.0.2-3.fc28.x86_64 52/130 Verifying : blas-devel-3.8.0-8.fc29.x86_64 53/130 Verifying : lapack-3.8.0-8.fc29.x86_64 54/130 Verifying : suitesparse-4.4.6-12.fc29.x86_64 55/130 Verifying : python3-numpy-1:1.14.2-1.fc29.x86_64 56/130 Verifying : python3-sympy-1.1.1-4.fc29.noarch 57/130 Verifying : boost-thread-1.66.0-5.fc29.x86_64 58/130 Verifying : libicu-60.2-3.fc29.x86_64 59/130 Verifying : python2-libs-2.7.14-15.fc29.x86_64 60/130 Verifying : emacs-filesystem-1:25.3-5.fc28.noarch 61/130 Verifying : libgfortran-8.0.1-0.21.fc29.x86_64 62/130 Verifying : libaec-1.0.2-3.fc28.x86_64 63/130 Verifying : blas-3.8.0-8.fc29.x86_64 64/130 Verifying : tbb-2018.2-5.fc28.x86_64 65/130 Verifying : openblas-0.2.20-10.fc29.x86_64 66/130 Verifying : openblas-threads-0.2.20-10.fc29.x86_64 67/130 Verifying : python3-fastcache-1.0.2-12.fc28.x86_64 68/130 Verifying : python3-gmpy2-2.0.8-7.fc28.x86_64 69/130 Verifying : python3-matplotlib-2.1.2-2.fc28.x86_64 70/130 Verifying : python3-mpmath-0.19-12.fc28.noarch 71/130 Verifying : python3-pyglet-1.3.1-1.fc28.noarch 72/130 Verifying : libquadmath-8.0.1-0.21.fc29.x86_64 73/130 Verifying : dejavu-sans-fonts-2.35-6.fc28.noarch 74/130 Verifying : freetype-2.9-1.fc29.x86_64 75/130 Verifying : libpng-2:1.6.34-4.fc28.x86_64 76/130 Verifying : libqhull-2015.2-5.fc28.x86_64 77/130 Verifying : python-matplotlib-data-2.1.2-2.fc28.noarch 78/130 Verifying : python3-cycler-0.10.0-6.fc28.noarch 79/130 Verifying : python3-dateutil-1:2.7.0-1.fc29.noarch 80/130 Verifying : python3-matplotlib-tk-2.1.2-2.fc28.x86_64 81/130 Verifying : python3-pyparsing-2.1.10-7.fc29.noarch 82/130 Verifying : python3-pytz-2017.2-7.fc29.noarch 83/130 Verifying : python3-six-1.11.0-3.fc28.noarch 84/130 Verifying : texlive-dvipng-7:20170520-27.fc29.x86_64 85/130 Verifying : python3-future-0.16.0-8.fc28.noarch 86/130 Verifying : dejavu-fonts-common-2.35-6.fc28.noarch 87/130 Verifying : python-matplotlib-data-fonts-2.1.2-2.fc28.noarch 88/130 Verifying : gd-2.2.5-3.fc29.x86_64 89/130 Verifying : texlive-base-7:20170520-27.fc29.x86_64 90/130 Verifying : texlive-kpathsea-7:20170520-27.fc29.x86_64 91/130 Verifying : texlive-lib-7:20170520-27.fc29.x86_64 92/130 Verifying : fontpackages-filesystem-1.44-21.fc29.noarch 93/130 Verifying : fontconfig-2.13.0-3.fc29.x86_64 94/130 Verifying : libX11-1.6.5-7.fc29.x86_64 95/130 Verifying : libXpm-3.5.12-5.fc28.x86_64 96/130 Verifying : libjpeg-turbo-1.5.90-1.fc29.x86_64 97/130 Verifying : libtiff-4.0.9-8.fc29.x86_64 98/130 Verifying : libwebp-0.6.1-8.fc29.x86_64 99/130 Verifying : libX11-common-1.6.5-7.fc29.noarch 100/130 Verifying : libxcb-1.13-2.fc29.x86_64 101/130 Verifying : jbigkit-libs-2.1-12.fc29.x86_64 102/130 Verifying : libXau-1.0.8-11.fc28.x86_64 103/130 Verifying : mesa-libGLU-9.0.0-14.fc29.x86_64 104/130 Verifying : libglvnd-glx-1:1.0.1-0.4.20180327git5baa1e5.fc29 105/130 Verifying : libXext-1.3.3-8.fc28.x86_64 106/130 Verifying : libglvnd-1:1.0.1-0.4.20180327git5baa1e5.fc29.x86 107/130 Verifying : python3-3.6.5-1.fc29.x86_64 108/130 Verifying : python3-pip-9.0.3-1.fc29.noarch 109/130 Verifying : python3-setuptools-39.0.1-1.fc29.noarch 110/130 Verifying : python3-pillow-5.1.0-1.fc29.x86_64 111/130 Verifying : lcms2-2.9-2.fc28.x86_64 112/130 Verifying : libimagequant-2.11.10-1.fc29.x86_64 113/130 Verifying : openjpeg2-2.3.0-7.fc29.x86_64 114/130 Verifying : python3-olefile-0.45.1-1.fc28.noarch 115/130 Verifying : python3-tkinter-3.6.5-1.fc29.x86_64 116/130 Verifying : tcl-1:8.6.8-1.fc29.x86_64 117/130 Verifying : tk-1:8.6.8-1.fc29.x86_64 118/130 Verifying : libXft-2.3.2-8.fc28.x86_64 119/130 Verifying : libXrender-0.9.10-5.fc28.x86_64 120/130 Verifying : python3-cairo-1.16.3-1.fc29.x86_64 121/130 Verifying : cairo-1.15.12-1.fc29.x86_64 122/130 Verifying : pixman-0.34.0-6.fc28.x86_64 123/130 Verifying : python2-2.7.14-15.fc29.x86_64 124/130 Verifying : python2-pip-9.0.3-1.fc29.noarch 125/130 Verifying : python2-setuptools-39.0.1-1.fc29.noarch 126/130 Verifying : python2-numpy-1:1.14.2-1.fc29.x86_64 127/130 Verifying : python2-nose-1.3.7-19.fc28.noarch 128/130 Verifying : python3-ufl-2017.2.0-0.fc29.noarch 129/130 Verifying : atlas-3.10.3-5.fc29.x86_64 130/130 Installed: boost-devel.x86_64 1.66.0-5.fc29 cmake.x86_64 3.11.0-1.fc29 eigen3-devel.noarch 3.3.4-5.fc29 hdf5-devel.x86_64 1.8.20-3.fc29 lapack-devel.x86_64 3.8.0-8.fc29 python3-ffc.noarch 2017.2.0.post0-1.fc29 python3-rpm-macros.noarch 3-28.fc29 sphinx.x86_64 2.2.11-7.fc28 suitesparse-devel.x86_64 4.4.6-12.fc29 zlib-devel.x86_64 1.2.11-7.fc29 atlas.x86_64 3.10.3-5.fc29 blas.x86_64 3.8.0-8.fc29 blas-devel.x86_64 3.8.0-8.fc29 boost.x86_64 1.66.0-5.fc29 boost-atomic.x86_64 1.66.0-5.fc29 boost-chrono.x86_64 1.66.0-5.fc29 boost-container.x86_64 1.66.0-5.fc29 boost-context.x86_64 1.66.0-5.fc29 boost-coroutine.x86_64 1.66.0-5.fc29 boost-date-time.x86_64 1.66.0-5.fc29 boost-fiber.x86_64 1.66.0-5.fc29 boost-filesystem.x86_64 1.66.0-5.fc29 boost-graph.x86_64 1.66.0-5.fc29 boost-iostreams.x86_64 1.66.0-5.fc29 boost-locale.x86_64 1.66.0-5.fc29 boost-log.x86_64 1.66.0-5.fc29 boost-math.x86_64 1.66.0-5.fc29 boost-numpy.x86_64 1.66.0-5.fc29 boost-program-options.x86_64 1.66.0-5.fc29 boost-python2.x86_64 1.66.0-5.fc29 boost-random.x86_64 1.66.0-5.fc29 boost-regex.x86_64 1.66.0-5.fc29 boost-serialization.x86_64 1.66.0-5.fc29 boost-signals.x86_64 1.66.0-5.fc29 boost-stacktrace.x86_64 1.66.0-5.fc29 boost-system.x86_64 1.66.0-5.fc29 boost-test.x86_64 1.66.0-5.fc29 boost-thread.x86_64 1.66.0-5.fc29 boost-timer.x86_64 1.66.0-5.fc29 boost-type_erasure.x86_64 1.66.0-5.fc29 boost-wave.x86_64 1.66.0-5.fc29 cairo.x86_64 1.15.12-1.fc29 cmake-data.noarch 3.11.0-1.fc29 cmake-filesystem.x86_64 3.11.0-1.fc29 cmake-rpm-macros.noarch 3.11.0-1.fc29 dejavu-fonts-common.noarch 2.35-6.fc28 dejavu-sans-fonts.noarch 2.35-6.fc28 emacs-filesystem.noarch 1:25.3-5.fc28 fontconfig.x86_64 2.13.0-3.fc29 fontpackages-filesystem.noarch 1.44-21.fc29 freetype.x86_64 2.9-1.fc29 gcc-gfortran.x86_64 8.0.1-0.21.fc29 gd.x86_64 2.2.5-3.fc29 hdf5.x86_64 1.8.20-3.fc29 jbigkit-libs.x86_64 2.1-12.fc29 jsoncpp.x86_64 1.8.4-3.fc28 lapack.x86_64 3.8.0-8.fc29 lcms2.x86_64 2.9-2.fc28 libX11.x86_64 1.6.5-7.fc29 libX11-common.noarch 1.6.5-7.fc29 libXau.x86_64 1.0.8-11.fc28 libXext.x86_64 1.3.3-8.fc28 libXft.x86_64 2.3.2-8.fc28 libXpm.x86_64 3.5.12-5.fc28 libXrender.x86_64 0.9.10-5.fc28 libaec.x86_64 1.0.2-3.fc28 libaec-devel.x86_64 1.0.2-3.fc28 libgfortran.x86_64 8.0.1-0.21.fc29 libglvnd.x86_64 1:1.0.1-0.4.20180327git5baa1e5.fc29 libglvnd-glx.x86_64 1:1.0.1-0.4.20180327git5baa1e5.fc29 libicu.x86_64 60.2-3.fc29 libicu-devel.x86_64 60.2-3.fc29 libimagequant.x86_64 2.11.10-1.fc29 libjpeg-turbo.x86_64 1.5.90-1.fc29 libpng.x86_64 2:1.6.34-4.fc28 libqhull.x86_64 2015.2-5.fc28 libquadmath.x86_64 8.0.1-0.21.fc29 libquadmath-devel.x86_64 8.0.1-0.21.fc29 libtiff.x86_64 4.0.9-8.fc29 libuv.x86_64 1:1.20.0-1.fc29 libwebp.x86_64 0.6.1-8.fc29 libxcb.x86_64 1.13-2.fc29 mariadb-connector-c.x86_64 3.0.3-3.fc29 mesa-libGLU.x86_64 9.0.0-14.fc29 openblas.x86_64 0.2.20-10.fc29 openblas-threads.x86_64 0.2.20-10.fc29 openjpeg2.x86_64 2.3.0-7.fc29 pixman.x86_64 0.34.0-6.fc28 postgresql-libs.x86_64 10.3-2.fc29 python-matplotlib-data.noarch 2.1.2-2.fc28 python-matplotlib-data-fonts.noarch 2.1.2-2.fc28 python2.x86_64 2.7.14-15.fc29 python2-libs.x86_64 2.7.14-15.fc29 python2-nose.noarch 1.3.7-19.fc28 python2-numpy.x86_64 1:1.14.2-1.fc29 python2-pip.noarch 9.0.3-1.fc29 python2-setuptools.noarch 39.0.1-1.fc29 python3.x86_64 3.6.5-1.fc29 python3-cairo.x86_64 1.16.3-1.fc29 python3-cycler.noarch 0.10.0-6.fc28 python3-dateutil.noarch 1:2.7.0-1.fc29 python3-dijitso.noarch 2017.2.0-0.fc29 python3-fastcache.x86_64 1.0.2-12.fc28 python3-fiat.noarch 2017.2.0-0.fc29 python3-future.noarch 0.16.0-8.fc28 python3-gmpy2.x86_64 2.0.8-7.fc28 python3-matplotlib.x86_64 2.1.2-2.fc28 python3-matplotlib-tk.x86_64 2.1.2-2.fc28 python3-mpmath.noarch 0.19-12.fc28 python3-numpy.x86_64 1:1.14.2-1.fc29 python3-olefile.noarch 0.45.1-1.fc28 python3-pillow.x86_64 5.1.0-1.fc29 python3-pip.noarch 9.0.3-1.fc29 python3-pyglet.noarch 1.3.1-1.fc28 python3-pyparsing.noarch 2.1.10-7.fc29 python3-pytz.noarch 2017.2-7.fc29 python3-setuptools.noarch 39.0.1-1.fc29 python3-six.noarch 1.11.0-3.fc28 python3-sympy.noarch 1.1.1-4.fc29 python3-tkinter.x86_64 3.6.5-1.fc29 python3-ufl.noarch 2017.2.0-0.fc29 rhash.x86_64 1.3.5-2.fc28 suitesparse.x86_64 4.4.6-12.fc29 tbb.x86_64 2018.2-5.fc28 tcl.x86_64 1:8.6.8-1.fc29 texlive-base.x86_64 7:20170520-27.fc29 texlive-dvipng.x86_64 7:20170520-27.fc29 texlive-kpathsea.x86_64 7:20170520-27.fc29 texlive-lib.x86_64 7:20170520-27.fc29 tk.x86_64 1:8.6.8-1.fc29 Complete! Finish: build setup for dolfin-2017.2.0-1.fc29.src.rpm Start: rpmbuild dolfin-2017.2.0-1.fc29.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.gsLwOT + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf dolfin-2017.2.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/dolfin-2017.2.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd dolfin-2017.2.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.QFhcZ4 + umask 022 + cd /builddir/build/BUILD + cd dolfin-2017.2.0 + rm -rf build + mkdir build + pushd build ~/build/BUILD/dolfin-2017.2.0/build ~/build/BUILD/dolfin-2017.2.0 + export LDFLAGS=-Wl,--as-needed + LDFLAGS=-Wl,--as-needed + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS=-Wl,--as-needed + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DDOLFIN_PKGCONFIG_DIR=/usr/lib64/pkgconfig -DDOLFIN_LIB_DIR=/usr/lib64 -DDOLFIN_ENABLE_PYTHON=OFF ../ -- The C compiler identification is GNU 8.0.1 -- The CXX compiler identification is GNU 8.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH) -- Boost version: 1.66.0 -- Found the following Boost libraries: -- timer -- filesystem -- program_options -- iostreams -- chrono -- system -- regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.6.5", minimum required is "3") -- Found UFC: /usr/lib/python3.6/site-packages/ffc/backends/ufc (Required is at least version "2017.2") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.4.2") -- Checking for one of the modules 'craypetsc_real;PETSc' -- PETSc could not be found. Be sure to set PETSC_DIR. (missing: PETSC_FOUND) (Required is at least version "3.7") -- Checking for package 'AMD' -- Looking for sgemm_ -- Looking for sgemm_ - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib64/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Performing test CHOLMOD_TEST_RUNS - Success -- Performing test UMFPACK_TEST_RUNS - Success -- Found UMFPACK: /lib64/libumfpack.so;/lib64/libamd.so;/usr/lib64/libblas.so;/lib64/libcholmod.so;/lib64/libamd.so;/lib64/libcamd.so;/lib64/libcolamd.so;/lib64/libccolamd.so;/lib64/libsuitesparseconfig.so;/lib64/librt.so;/lib64/liblapack.so;/usr/lib64/libblas.so;/usr/lib64/libblas.so;/usr/lib/gcc/x86_64-redhat-linux/8/libgfortran.so;/lib64/libsuitesparseconfig.so;/usr/lib/gcc/x86_64-redhat-linux/8/libgfortran.so -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib64/libblas.so -- Performing test CHOLMOD_TEST_RUNS - Success -- Found CHOLMOD: /lib64/libcholmod.so;/lib64/libamd.so;/lib64/libcamd.so;/lib64/libcolamd.so;/lib64/libccolamd.so;/lib64/libsuitesparseconfig.so;/lib64/librt.so;/lib64/liblapack.so;/usr/lib64/libblas.so;/usr/lib64/libblas.so;/usr/lib/gcc/x86_64-redhat-linux/8/libgfortran.so -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /lib64/libhdf5.so;/lib64/libsz.so;/lib64/libz.so;/lib64/libdl.so;/lib64/libm.so (found version "1.8.20") found components: C -- Checking for Trilinos -- Unable to find Trilinos (>= 12.4.0) -- Trilinos could not be found -- Found ZLIB: /lib64/libz.so (found version "1.2.11") -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFIN_AUTO_DETECT_MPI, Detect MPI automatically (turn this off to use the MPI compiler wrappers directly via setting CXX, CXX, FC). * DOLFIN_WITH_LIBRARY_VERSION, Build with library version information. * DOLFIN_ENABLE_DOCS, Enable generation of documentation. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. * DOLFIN_ENABLE_MPI, Compile with support for MPI. * DOLFIN_ENABLE_PETSC, Compile with support for PETSc. * DOLFIN_ENABLE_PETSC4PY, Compile with support for PETSc4py. * DOLFIN_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFIN_ENABLE_SLEPC4PY, Compile with support for SLEPc4py. * DOLFIN_ENABLE_TRILINOS, Compile with support for Trilinos. * DOLFIN_ENABLE_UMFPACK, Compile with support for UMFPACK. * DOLFIN_ENABLE_CHOLMOD, Compile with support for CHOLMOD. * DOLFIN_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFIN_ENABLE_PARMETIS, Compile with support for ParMETIS. * DOLFIN_ENABLE_ZLIB, Compile with support for zlib. * DOLFIN_ENABLE_SPHINX, Compile with support for Sphinx. * DOLFIN_ENABLE_HDF5, Compile with support for HDF5. -- The following OPTIONAL packages have been found: * UMFPACK, Sparse LU factorization library, * BLAS, Basic Linear Algebra Subprograms, * Threads * CHOLMOD, Sparse Cholesky factorization library for sparse matrices, * HDF5, Hierarchical Data Format 5 (HDF5), * ZLIB, Compression library, -- The following REQUIRED packages have been found: * Boost, Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PythonInterp (required version >= 3), Interactive high-level object-oriented language, * UFC (required version >= 2017.2), Unified language for form-compilers (part of FFC), * PkgConfig -- The following features have been disabled: * CMAKE_USE_RELATIVE_PATHS, Use relative paths in makefiles and projects. * DOLFIN_ENABLE_CODE_COVERAGE, Enable code coverage. * DOLFIN_ENABLE_TESTING, Enable testing. * DOLFIN_ENABLE_BENCHMARKS, Enable benchmark programs. * DOLFIN_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * DOLFIN_DEPRECATION_ERROR, Turn deprecation warnings into errors. * DOLFIN_IGNORE_PETSC4PY_VERSION, Ignore version of PETSc4py. * DOLFIN_ENABLE_GEOMETRY_DEBUGGING, Enable geometry debugging. * DOLFIN_ENABLE_PYTHON, Compile with support for Python. -- The following OPTIONAL packages have not been found: * MPI, Message Passing Interface (MPI) Enables DOLFIN to run in parallel with MPI * PETSc (required version >= 3.7), Portable, Extensible Toolkit for Scientific Computation, Enables the PETSc linear algebra backend -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of size_t -- Check size of size_t - done -- -- Generating demo source files from reStructuredText -- -------------------------------------------------- extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/auto-adaptive-poisson/python/demo_auto-adaptive-poisson.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/biharmonic/python/demo_biharmonic.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/built-in-meshes/python/demo_built-in-meshes.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/cahn-hilliard/python/demo_cahn-hilliard.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/eigenvalue/python/demo_eigenvalue.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/hyperelasticity/python/demo_hyperelasticity.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/maxwell-eigenvalues/python/demo_maxwell-eigenvalues.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/mixed-poisson/python/demo_mixed-poisson.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/neumann-poisson/python/demo_neumann-poisson.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/nonlinear-poisson/python/demo_nonlinear-poisson.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/nonmatching-interpolation/python/demo_nonmatching-interpolation.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/poisson/python/demo_poisson.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/singular-poisson-rst/python/demo_singular-poisson-rst.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/stokes-iterative/python/demo_stokes-iterative.py extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/auto-adaptive-poisson/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/biharmonic/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/built-in-meshes/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/eigenvalue/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/hyperelasticity/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/mixed-poisson/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/nonmatching-interpolation/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/poisson/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/biharmonic/cpp/Biharmonic.ufl extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/hyperelasticity/cpp/HyperElasticity.ufl extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/mixed-poisson/cpp/MixedPoisson.ufl extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/nonmatching-interpolation/cpp/P1.ufl extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/nonmatching-interpolation/cpp/P3.ufl extract written to /builddir/build/BUILD/dolfin-2017.2.0/demo/documented/poisson/cpp/Poisson.ufl -- -- Generating form files in demo, test and bench directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo, test and bench directories -- ------------------------------------------------------------------- -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Disabling generation of documentation because Sphinx is missing. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/dolfin-2017.2.0/build + make -j2 /usr/bin/cmake -H/builddir/build/BUILD/dolfin-2017.2.0 -B/builddir/build/BUILD/dolfin-2017.2.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2017.2.0/build/CMakeFiles /builddir/build/BUILD/dolfin-2017.2.0/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2017.2.0/build' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2017.2.0/build' cd /builddir/build/BUILD/dolfin-2017.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2017.2.0 /builddir/build/BUILD/dolfin-2017.2.0/dolfin/ale /builddir/build/BUILD/dolfin-2017.2.0/build /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin/ale /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake --color= Scanning dependencies of target compile_ale_forms make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2017.2.0/build' make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2017.2.0/build' [ 0%] Compiling form Poisson1D.ufl [ 0%] Compiling form Poisson2D.ufl cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2017.2.0/build /builddir/build/BUILD/dolfin-2017.2.0/dolfin/ale/Poisson2D.ufl cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2017.2.0/build /builddir/build/BUILD/dolfin-2017.2.0/dolfin/ale/Poisson1D.ufl [ 0%] Compiling form Poisson3D.ufl cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2017.2.0/build /builddir/build/BUILD/dolfin-2017.2.0/dolfin/ale/Poisson3D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2017.2.0/build' [ 0%] Built target compile_ale_forms make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2017.2.0/build' cd /builddir/build/BUILD/dolfin-2017.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2017.2.0 /builddir/build/BUILD/dolfin-2017.2.0/dolfin /builddir/build/BUILD/dolfin-2017.2.0/build /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake --color= Scanning dependencies of target dolfin make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2017.2.0/build' make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2017.2.0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/adapt.cpp cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/adaptivesolve.cpp [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/ErrorControl.cpp [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/Extrapolation.cpp [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp [ 2%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/GoalFunctional.cpp [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/marking.cpp [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/TimeSeries.cpp [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/ale/ALE.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/ale/ALE.cpp In file included from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/TimeSeries.cpp:30: /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const T&) [with T = std::__cxx11::basic_string; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(datatype_id, attribute_value.size()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(memtype, string_length); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/TimeSeries.cpp:110:75: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/TimeSeries.cpp:110:75: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Aread(attr_id, h5type, &attribute_value); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from 'void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::__cxx11::string, std::__cxx11::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/TimeSeries.cpp:168:77: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from 'void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::__cxx11::string, std::__cxx11::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/adaptivity/TimeSeries.cpp:168:77: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:523:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); ^~~~~~ [ 5%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/ale/HarmonicSmoothing.cpp [ 5%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/ale/MeshDisplacement.cpp [ 5%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -DDOLFIN_GIT_COMMIT_HASH=\"unknown\" -DUFC_SIGNATURE=\"fdd1870ed47e8aa6565e0fd101a23a90c45b2afd\" -o CMakeFiles/dolfin.dir/common/defines.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/common/defines.cpp [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/init.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/common/init.cpp [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/MPI.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/common/MPI.cpp [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/common/SubSystemsManager.cpp [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/Timer.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/common/Timer.cpp [ 8%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/timing.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/common/timing.cpp [ 8%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/common/UniqueIdGenerator.cpp [ 8%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/utils.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/common/utils.cpp [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/common/Variable.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/common/Variable.cpp [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/assemble.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/assemble.cpp [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/assemble_local.cpp [ 11%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/AssemblerBase.cpp [ 11%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/Assembler.cpp [ 11%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/DirichletBC.cpp [ 13%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/DiscreteOperators.cpp [ 13%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/DofMapBuilder.cpp [ 13%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/DofMap.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/DofMapBuilder.cpp: In static member function 'static void dolfin::DofMapBuilder::compute_node_reordering(dolfin::IndexMap&, std::vector&, const std::unordered_map >&, const std::vector&, const std::vector >&, const std::vector&, const std::set&, MPI_Comm)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/DofMapBuilder.cpp:1663:13: warning: unused variable 'it' [-Wunused-variable] for (auto it : old_to_new_local) ^~ [ 13%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/Equation.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/Equation.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/fem_utils.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/FiniteElement.cpp [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/Form.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/Form.cpp [ 16%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/LinearTimeDependentProblem.cpp [ 16%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/LinearVariationalProblem.cpp [ 16%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/LinearVariationalSolver.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/LocalAssembler.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/LocalSolver.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/MultiMeshAssembler.cpp [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/MultiMeshDirichletBC.cpp [ 19%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/MultiMeshDofMap.cpp [ 19%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/MultiMeshForm.cpp [ 19%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/NonlinearVariationalProblem.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/NonlinearVariationalSolver.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/PointSource.cpp [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/PETScDMCollection.cpp [ 22%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/solve.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/solve.cpp [ 22%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/SparsityPatternBuilder.cpp [ 22%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/SystemAssembler.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/fem/UFC.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/fem/UFC.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/assign.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/assign.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/CoefficientAssigner.cpp [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/Constant.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/Constant.cpp [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/Expression.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/Expression.cpp [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/FunctionAssigner.cpp [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/FunctionAXPY.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/Function.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/Function.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/FunctionSpace.cpp [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/GenericFunction.cpp [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/LagrangeInterpolator.cpp [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/MultiMeshCoefficientAssigner.cpp [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/MultiMeshFunction.cpp [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/MultiMeshFunctionSpace.cpp [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/MultiMeshSubSpace.cpp [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/SpecialFacetFunction.cpp [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/function/SpecialFunctions.cpp [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/generation/BoxMesh.cpp [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/generation/IntervalMesh.cpp [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/generation/RectangleMesh.cpp [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/generation/SphericalShellMesh.cpp [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/generation/UnitDiscMesh.cpp [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/generation/UnitTetrahedronMesh.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/generation/UnitTriangleMesh.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/BoundingBoxTree.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/CollisionPredicates.cpp [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/ConvexTriangulation.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/ConvexTriangulation.cpp: In static member function 'static std::vector > dolfin::ConvexTriangulation::_triangulate_1d(const std::vector&, std::size_t)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/ConvexTriangulation.cpp:226:10: warning: variable 'collinear' set but not used [-Wunused-but-set-variable] bool collinear = true; ^~~~~~~~~ [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/GenericBoundingBoxTree.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/ConvexTriangulation.cpp: In static member function 'static std::vector > dolfin::ConvexTriangulation::_triangulate_graham_scan_3d(const std::vector&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/ConvexTriangulation.cpp:404:46: warning: 'previous_orientation' may be used uninitialized in this function [-Wmaybe-uninitialized] if (previous_orientation * orientation < 0) ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/GeometryDebugging.cpp [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/GeometryPredicates.cpp [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/intersect.cpp [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/IntersectionConstruction.cpp [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/MeshPointIntersection.cpp [ 38%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/Point.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/Point.cpp [ 38%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/predicates.cpp [ 38%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/geometry/SimplexQuadrature.cpp [ 38%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/graph/BoostGraphOrdering.cpp [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/graph/GraphBuilder.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/graph/GraphBuilder.cpp: In static member function 'static int32_t dolfin::GraphBuilder::compute_nonlocal_dual_graph(MPI_Comm, const boost::multi_array&, const dolfin::CellType&, int64_t, std::vector >&, dolfin::GraphBuilder::FacetCellMap&, std::set&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/graph/GraphBuilder.cpp:364:21: warning: unused variable 'num_vertices_per_cell' [-Wunused-variable] const std::int8_t num_vertices_per_cell = cell_type.num_entities(0); ^~~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/graph/GraphColoring.cpp [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/graph/ParMETIS.cpp [ 41%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/graph/SCOTCH.cpp [ 41%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/graph/ZoltanInterface.cpp [ 41%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/base64.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/base64.cpp [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/File.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/File.cpp [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/GenericFile.cpp [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp [ 44%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp In file included from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:28: /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const T&) [with T = std::__cxx11::basic_string; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(datatype_id, attribute_value.size()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(memtype, string_length); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::__cxx11::string, const T&) [with T = double; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:95:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::__cxx11::string, const T&) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:101:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::__cxx11::string, const T&) [with T = std::vector; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:107:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::__cxx11::string, const T&) [with T = std::vector; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:113:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::__cxx11::basic_string; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::__cxx11::string, const T&) [with T = std::__cxx11::basic_string; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:119:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::__cxx11::string, T&) const [with T = double; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:125:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::__cxx11::string, T&) const [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:131:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::__cxx11::string, T&) const [with T = std::vector; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:137:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::__cxx11::string, T&) const [with T = std::vector; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:143:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = std::__cxx11::basic_string; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::__cxx11::string, T&) const [with T = std::__cxx11::basic_string; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:151:36: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::__cxx11::string, const T&) [with T = double; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:95:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:523:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::__cxx11::string, const T&) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:101:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:523:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const std::vector&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::__cxx11::string, const T&) [with T = std::vector; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:107:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:555:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const std::vector&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::__cxx11::string, const T&) [with T = std::vector; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:113:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:555:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::__cxx11::string, T&) const [with T = double; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:125:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Aread(attr_id, h5type, &attribute_value); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::__cxx11::string, T&) const [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:131:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable 'status' [-Wunused-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = double; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::__cxx11::string, T&) const [with T = std::vector; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:137:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:642:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::__cxx11::string, T&) const [with T = std::vector; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.cpp:143:34: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:642:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); ^~~~~~ [ 44%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp In file included from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:50: /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const T&) [with T = std::__cxx11::basic_string; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(datatype_id, attribute_value.size()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(memtype, string_length); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp: In member function 'void dolfin::HDF5File::write(const dolfin::Mesh&, std::size_t, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:446:24: warning: unused variable 'num_cells' [-Wunused-variable] const std::int64_t num_cells ^~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp: In member function 'void dolfin::HDF5File::read(dolfin::Function&, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1067:21: warning: unused variable 'num_global_dofs' [-Wunused-variable] const std::size_t num_global_dofs = vector_shape[0]; ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:50: /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::__cxx11::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:173:74: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:182:42: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:223:46: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::__cxx11::string, std::pair, std::vector&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:257:77: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::__cxx11::basic_string; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:466:66: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::__cxx11::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1047:54: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::__cxx11::string, std::pair, std::vector&) [with T = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1061:46: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = std::__cxx11::basic_string; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1641:47: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::__cxx11::string, std::pair, std::vector&) [with T = long int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1821:44: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const std::vector&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:182:42: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:555:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:223:46: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:642:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::__cxx11::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.h:277:33: required from 'void dolfin::HDF5File::write_data(std::__cxx11::string, const std::vector&, std::vector, bool) [with T = long int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:450:71: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::__cxx11::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.h:277:33: required from 'void dolfin::HDF5File::write_data(std::__cxx11::string, const std::vector&, std::vector, bool) [with T = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:925:65: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::__cxx11::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.h:277:33: required from 'void dolfin::HDF5File::write_data(std::__cxx11::string, const std::vector&, std::vector, bool) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:929:69: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1191:31: required from 'void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::__cxx11::string) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1085:48: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1257:31: required from 'void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::__cxx11::string) const [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1091:47: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ In file included from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:26: /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const T&) [with T = std::__cxx11::basic_string; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(datatype_id, attribute_value.size()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(memtype, string_length); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static hid_t dolfin::HDF5Interface::open_file(MPI_Comm, std::__cxx11::string, std::__cxx11::string, bool)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:96:10: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Pclose(plist_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static void dolfin::HDF5Interface::close_file(hid_t)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:104:10: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Fclose(hdf5_file_handle); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static void dolfin::HDF5Interface::flush_file(hid_t)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:110:10: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Fflush(hdf5_file_handle, H5F_SCOPE_GLOBAL); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static const string dolfin::HDF5Interface::get_attribute_type(hid_t, std::__cxx11::string, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:135:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static void dolfin::HDF5Interface::delete_attribute(hid_t, std::__cxx11::string, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:196:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static const std::vector > dolfin::HDF5Interface::list_attributes(hid_t, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:234:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Aiterate2(dset_id, H5_INDEX_NAME, H5_ITER_INC, &n, ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static bool dolfin::HDF5Interface::has_attribute(hid_t, std::__cxx11::string, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:250:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static bool dolfin::HDF5Interface::has_group(hid_t, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:272:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static bool dolfin::HDF5Interface::has_dataset(hid_t, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:303:10: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Pclose(lapl_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static void dolfin::HDF5Interface::add_group(hid_t, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:336:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Gclose(group_id_vis); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static int dolfin::HDF5Interface::dataset_rank(hid_t, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:359:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sclose(space); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1191:31: required from 'void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::__cxx11::string) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1085:48: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:523:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static std::vector dolfin::HDF5Interface::get_dataset_shape(hid_t, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:387:13: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(space, size.data(), NULL); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:391:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sclose(space); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static int dolfin::HDF5Interface::num_datasets_in_group(hid_t, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:405:10: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Gget_info_by_name(hdf5_file_handle, group_name.c_str(), ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp: In static member function 'static std::vector > dolfin::HDF5Interface::dataset_list(hid_t, std::__cxx11::string)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.cpp:418:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, T&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1257:31: required from 'void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::__cxx11::string) const [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.cpp:1091:47: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Aread(attr_id, h5type, &attribute_value); ^~~~~~ [ 44%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Utility.cpp [ 44%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/pugixml.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/pugixml.cpp [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/RAWFile.cpp [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/SVGFile.cpp [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/VTKFile.cpp [ 47%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/VTKWriter.cpp [ 47%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/X3DFile.cpp [ 47%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/X3DOM.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/X3DOM.cpp: In static member function 'static void dolfin::X3DOM::add_menu_color_tab(pugi::xml_node&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/X3DOM.cpp:933:18: warning: variable 'br_node' set but not used [-Wunused-but-set-variable] pugi::xml_node br_node = xml_node.append_child("br"); ^~~~~~~ [ 49%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp [ 49%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLFile.cpp In file included from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:51: /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const T&) [with T = std::__cxx11::basic_string; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(datatype_id, attribute_value.size()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = int]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Tset_size(memtype, string_length); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In member function 'void dolfin::XDMFFile::write_checkpoint(const dolfin::Function&, std::__cxx11::string, double, dolfin::XDMFFile::Encoding)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:150:28: warning: variable 'result' set but not used [-Wunused-but-set-variable] pugi::xml_parse_result result = _xml_doc->load_file(_filename.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:173:20: warning: variable 'domain_node' set but not used [-Wunused-but-set-variable] pugi::xml_node domain_node = xdmf_node.append_child("Domain"); ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In member function 'void dolfin::XDMFFile::write(const dolfin::Function&, double, dolfin::XDMFFile::Encoding)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:402:20: warning: variable 'domain_node' set but not used [-Wunused-but-set-variable] pugi::xml_node domain_node = xdmf_node.append_child("Domain"); ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In member function 'void dolfin::XDMFFile::read(dolfin::Mesh&) const': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1311:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In member function 'void dolfin::XDMFFile::read_checkpoint(dolfin::Function&, std::__cxx11::string, int64_t)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1430:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In static member function 'static void dolfin::XDMFFile::build_mesh_quadratic(dolfin::Mesh&, const dolfin::CellType&, int64_t, int64_t, int, int, const pugi::xml_node&, const pugi::xml_node&, const boost::filesystem::path&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1551:13: warning: unused variable 'num_edges_per_cell' [-Wunused-variable] const int num_edges_per_cell = cell_type.num_entities(1); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::__cxx11::string) [with T = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:763:43: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:791:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::__cxx11::string) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:777:39: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:791:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::__cxx11::string) [with T = double; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:782:39: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:791:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::__cxx11::string) [with T = long unsigned int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1104:30: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2419:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2484:22: warning: unused variable 'num_vertices_per_cell' [-Wunused-variable] const unsigned int num_vertices_per_cell = cell_type->num_entities(0); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2487:21: warning: unused variable 'num_entities_global' [-Wunused-variable] const std::size_t num_entities_global = get_num_cells(topology_node); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::__cxx11::string) [with T = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1112:40: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2419:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2484:22: warning: unused variable 'num_vertices_per_cell' [-Wunused-variable] const unsigned int num_vertices_per_cell = cell_type->num_entities(0); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2487:21: warning: unused variable 'num_entities_global' [-Wunused-variable] const std::size_t num_entities_global = get_num_cells(topology_node); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::__cxx11::string) [with T = double; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1122:40: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2419:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2484:22: warning: unused variable 'num_vertices_per_cell' [-Wunused-variable] const unsigned int num_vertices_per_cell = cell_type->num_entities(0); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2487:21: warning: unused variable 'num_entities_global' [-Wunused-variable] const std::size_t num_entities_global = get_num_cells(topology_node); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:51: /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::__cxx11::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1926:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::__cxx11::string, const T&, std::vector, std::__cxx11::string) [with T = std::vector; MPI_Comm = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.h:599:76: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1934:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::__cxx11::string, const T&, std::vector, std::__cxx11::string) [with T = std::vector; MPI_Comm = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.h:599:76: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Adelete(dset_id, attribute_name.c_str()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] herr_t status = H5Oclose(dset_id); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::__cxx11::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1926:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::__cxx11::string, const T&, std::vector, std::__cxx11::string) [with T = std::vector; MPI_Comm = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:377:75: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::__cxx11::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1926:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::__cxx11::string, const T&, std::vector, std::__cxx11::string) [with T = std::vector; MPI_Comm = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1280:52: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::__cxx11::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2347:32: required from 'static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long unsigned int; MPI_Comm = int]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1494:77: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::__cxx11::string, std::pair, std::vector&) [with T = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2347:32: required from 'static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = int; MPI_Comm = int]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1514:71: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::__cxx11::string, std::pair, std::vector&) [with T = double; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2347:32: required from 'static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = double; MPI_Comm = int]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1527:45: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::__cxx11::string, std::pair, std::vector&) [with T = long int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:2347:32: required from 'static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long int; MPI_Comm = int]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1716:69: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); ^~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::__cxx11::string, const std::vector&) [with T = long unsigned int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::__cxx11::string, std::__cxx11::string, const T&) [with T = std::vector; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1934:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::__cxx11::string, const T&, std::vector, std::__cxx11::string) [with T = std::vector; MPI_Comm = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.h:599:76: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:555:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::__cxx11::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1926:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::__cxx11::string, const T&, std::vector, std::__cxx11::string) [with T = std::vector; MPI_Comm = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1812:16: required from 'static void dolfin::XDMFFile::add_topology_data(MPI_Comm, pugi::xml_node&, hid_t, std::__cxx11::string, const dolfin::Mesh&, int) [with T = long int; MPI_Comm = int; hid_t = int; std::__cxx11::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XDMFFile.cpp:1145:47: required from here /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] herr_t status; ^~~~~~ [ 49%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLFunctionData.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLFunctionData.cpp: In static member function 'static void dolfin::XMLFunctionData::build_global_to_cell_dof(std::vector > >&, const dolfin::FunctionSpace&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLFunctionData.cpp:212:23: warning: unused variable 'D' [-Wunused-variable] const std::size_t D = mesh.topology().dim(); ^ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLFunctionData.cpp: In static member function 'static void dolfin::XMLFunctionData::build_dof_map(std::vector >&, const dolfin::FunctionSpace&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLFunctionData.cpp:291:23: warning: unused variable 'D' [-Wunused-variable] const std::size_t D = mesh.topology().dim(); ^ [ 49%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLMesh.cpp [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLParameters.cpp [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLTable.cpp [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/xmlutils.cpp [ 52%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XMLVector.cpp [ 52%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/io/XYZFile.cpp [ 52%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/Amesos2LUSolver.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/BelosKrylovSolver.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/BlockMatrix.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/BlockVector.cpp [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/CoordinateMatrix.cpp [ 55%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/DefaultFactory.cpp [ 55%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/EigenFactory.cpp [ 55%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/EigenKrylovSolver.cpp [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/EigenLUSolver.cpp [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/EigenMatrix.cpp [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/EigenVector.cpp [ 58%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/GenericLinearSolver.cpp [ 58%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/GenericMatrix.cpp [ 58%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/Ifpack2Preconditioner.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/IndexMap.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/KrylovSolver.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/LinearOperator.cpp [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/LinearSolver.cpp [ 61%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/LUSolver.cpp [ 61%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/MueluPreconditioner.cpp [ 61%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScBaseMatrix.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScFactory.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScKrylovSolver.cpp [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScLinearOperator.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScLUSolver.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScMatrix.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScObject.cpp [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScOptions.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScPreconditioner.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/PETScVector.cpp [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/SLEPcEigenSolver.cpp [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/solve.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/solve.cpp [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/SparsityPattern.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/SparsityPattern.cpp: In member function 'void dolfin::SparsityPattern::insert_full_rows_local(const std::vector&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/SparsityPattern.cpp:261:21: warning: unused variable 'ghosted_size0' [-Wunused-variable] const std::size_t ghosted_size0 = ^~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/SparsityPattern.cpp: In member function 'void dolfin::SparsityPattern::apply()': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/SparsityPattern.cpp:384:21: warning: unused variable 'proc_number' [-Wunused-variable] const std::size_t proc_number = _mpi_comm.rank(); ^~~~~~~~~~~ [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/TensorLayout.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/test_nullspace.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/TpetraFactory.cpp [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/TpetraMatrix.cpp [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/TpetraVector.cpp [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/TrilinosParameters.cpp [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/la/VectorSpaceBasis.cpp [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/Event.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/log/Event.cpp [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/log.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/log/log.cpp [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/Logger.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/log/Logger.cpp [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/LogManager.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/log/LogManager.cpp [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/LogStream.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/log/LogStream.cpp [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/Progress.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/log/Progress.cpp [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/log/Table.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/log/Table.cpp [ 74%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/math/basic.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/math/basic.cpp [ 74%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/math/Lagrange.cpp [ 74%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/math/Legendre.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/math/Legendre.cpp [ 74%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/BoundaryComputation.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/BoundaryMesh.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/Cell.cpp [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/CellType.cpp [ 77%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/DistributedMeshTools.cpp [ 77%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/DynamicMeshEditor.cpp [ 77%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/Edge.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Face.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/Face.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/FacetCell.cpp [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/Facet.cpp [ 80%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/HexahedronCell.cpp [ 80%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/IntervalCell.cpp [ 80%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/LocalMeshData.cpp [ 80%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshColoring.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshConnectivity.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/Mesh.cpp [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshData.cpp [ 83%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshDomains.cpp [ 83%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshEditor.cpp [ 83%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshEntity.cpp [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshFunction.cpp [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshGeometry.cpp [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshHierarchy.cpp [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshOrdering.cpp [ 86%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshPartitioning.cpp [ 86%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshQuality.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshPartitioning.cpp: In static member function 'static int32_t dolfin::MeshPartitioning::distribute_cells(MPI_Comm, const dolfin::LocalMeshData&, const std::vector&, const std::map >&, boost::multi_array&, std::vector&, std::vector&, std::map >&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshPartitioning.cpp:727:21: warning: unused variable 'num_local_cells' [-Wunused-variable] const std::size_t num_local_cells = mesh_data.topology.cell_vertices.size(); ^~~~~~~~~~~~~~~ [ 86%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshRenumbering.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshRenumbering.cpp: In static member function 'static dolfin::Mesh dolfin::MeshRenumbering::renumber_by_color(const dolfin::Mesh&, std::vector)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshRenumbering.cpp:149:42: warning: variable 'insert' set but not used [-Wunused-but-set-variable] std::pair insert ^~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshRenumbering.cpp: In static member function 'static void dolfin::MeshRenumbering::compute_renumbering(const dolfin::Mesh&, const std::vector&, std::vector&, std::vector&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshRenumbering.cpp:167:21: warning: unused variable 'num_cells' [-Wunused-variable] const std::size_t num_cells = mesh.num_cells(); ^~~~~~~~~ /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshRenumbering.cpp:204:35: warning: unused variable 'colors_old' [-Wunused-variable] const std::vector& colors_old = mesh_coloring->second.first; ^~~~~~~~~~ [ 88%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshSmoothing.cpp [ 88%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshTopology.cpp [ 88%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MeshTransformation.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/MultiMesh.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/PeriodicBoundaryComputation.cpp [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/PointCell.cpp [ 91%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/QuadrilateralCell.cpp [ 91%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/SubDomain.cpp [ 91%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/SubMesh.cpp [ 91%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/TetrahedronCell.cpp [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/TopologyComputation.cpp [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/mesh/TriangleCell.cpp [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/multistage/MultiStageScheme.cpp [ 94%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/multistage/PointIntegralSolver.cpp [ 94%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/multistage/RKSolver.cpp [ 94%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/nls/NewtonSolver.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/nls/PETScSNESSolver.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/nls/PETScTAOSolver.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/nls/TAOLinearBoundSolver.cpp [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/parameter/GlobalParameters.cpp [ 97%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/parameter/Parameter.cpp [ 97%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/parameter/Parameters.cpp [ 97%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/refinement/BisectionRefinement1D.cpp [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/refinement/LocalMeshCoarsening.cpp [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/refinement/ParallelRefinement.cpp [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/refinement/PlazaRefinementND.cpp [100%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/refinement/refine.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/refinement/refine.cpp [100%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2017.2.0 -I/builddir/build/BUILD/dolfin-2017.2.0/build -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/suitesparse -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -O2 -g -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2017.2.0/dolfin/refinement/RegularCutRefinement.cpp /builddir/build/BUILD/dolfin-2017.2.0/dolfin/refinement/RegularCutRefinement.cpp: In static member function 'static void dolfin::RegularCutRefinement::refine_marked(dolfin::Mesh&, const dolfin::Mesh&, const std::vector&, const dolfin::IndexSet&)': /builddir/build/BUILD/dolfin-2017.2.0/dolfin/refinement/RegularCutRefinement.cpp:323:19: warning: unused variable 'twin_marker' [-Wunused-variable] const int twin_marker = refinement_markers[bisection_twin]; ^~~~~~~~~~~ [100%] Linking CXX shared 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CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o CMakeFiles/dolfin.dir/refinement/refine.cpp.o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o /usr/lib64/libboost_timer.so /usr/lib64/libboost_filesystem.so /usr/lib64/libboost_program_options.so /usr/lib64/libboost_iostreams.so /lib64/libhdf5.so /lib64/libsz.so /lib64/libz.so /lib64/libdl.so -lm /lib64/libumfpack.so /lib64/libamd.so /usr/lib64/libblas.so /lib64/libcholmod.so /lib64/libamd.so /lib64/libcamd.so /lib64/libcolamd.so /lib64/libccolamd.so /lib64/libsuitesparseconfig.so /lib64/librt.so /lib64/liblapack.so /usr/lib64/libblas.so /usr/lib64/libblas.so /usr/lib/gcc/x86_64-redhat-linux/8/libgfortran.so /lib64/libsuitesparseconfig.so /usr/lib/gcc/x86_64-redhat-linux/8/libgfortran.so /lib64/libcholmod.so /lib64/libamd.so /lib64/libcamd.so /lib64/libcolamd.so /lib64/libccolamd.so /lib64/libsuitesparseconfig.so /lib64/librt.so /lib64/liblapack.so /usr/lib64/libblas.so /usr/lib64/libblas.so /usr/lib/gcc/x86_64-redhat-linux/8/libgfortran.so /lib64/libz.so /usr/lib64/libboost_chrono.so /usr/lib64/libboost_system.so /usr/lib64/libboost_regex.so /lib64/libdl.so -lm /lib64/libumfpack.so cd /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin && /usr/bin/cmake -E cmake_symlink_library libdolfin.so.2017.2.0 libdolfin.so.2017.2 libdolfin.so make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2017.2.0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2017.2.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2017.2.0/build/CMakeFiles 0 + popd ~/build/BUILD/dolfin-2017.2.0 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.0WAaJi + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64 '!=' / ']' + rm -rf 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make[2]: Entering directory '/builddir/build/BUILD/dolfin-2017.2.0/build' cd /builddir/build/BUILD/dolfin-2017.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2017.2.0 /builddir/build/BUILD/dolfin-2017.2.0/dolfin/ale /builddir/build/BUILD/dolfin-2017.2.0/build /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin/ale /builddir/build/BUILD/dolfin-2017.2.0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2017.2.0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2017.2.0/build' make[2]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2017.2.0/build' [ 0%] Built target compile_ale_forms /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make 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in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + rm -rf /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64//usr/lib64/python3.6/site-packages /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64//usr/lib/python3.6/site-packages ~/build/BUILD/dolfin-2017.2.0 + popd + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2017.2.0-1.fc29 --unique-debug-suffix -2017.2.0-1.fc29.x86_64 --unique-debug-src-base dolfin-2017.2.0-1.fc29.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/dolfin-2017.2.0 extracting debug info from /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/lib64/libdolfin.so.2017.2.0 /usr/lib/rpm/sepdebugcrcfix: Updated 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/builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/multimesh-poisson/python/demo_multimesh-poisson.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/nonmatching-projection/python/demo_nonmatching-projection.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/mixed-poisson-sphere/python/demo_mixed-poisson-sphere.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/mplot/python/demo_mplot.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/lift-drag/python/demo_lift-drag.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/sub-function-assignment/python/demo_sub-function-assignment.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/conditional/python/demo_conditional.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/overlapping-regions/python/demo_overlapping-regions.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/block-matrix/python/demo_block-matrix.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/elementplot/python/demo_elementplot.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/time-series/python/demo_time-series.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/compiled-extension-module/python/demo_compiled-extension-module.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/smoothing/python/demo_smoothing.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/elastodynamics/python/demo_elastodynamics.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/mesh-quality/python/demo_mesh-quality.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/collision-detection/python/demo_collision-detection.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/projection-interpolation/python/demo_projection-interpolation.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/functional/python/demo_functional.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/waveguide/cpp/Forms.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/waveguide/python/demo_waveguide.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/auto-adaptive-navier-stokes/python/demo_auto-adaptive-navier-stokes.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/buckling-tao/python/demo_buckling-tao.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/multimesh-stokes/python/demo_multimesh-stokes.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/poisson-disc/python/demo_poisson-disc.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/ghost-mesh/python/demo_ghost-mesh.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/poisson1D/python/demo_poisson1D.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/multistage-solver/python/demo_multistage-solver.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/extrapolation/python/demo_extrapolation.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/multimesh-quadrature/python/demo_multimesh-quadrature.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/coordinates/python/demo_coordinates.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/refinement/python/demo_refinement.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/poisson1D-in-2D/python/demo_poisson1D-in-2D.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/optimization/python/demo_optimization.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/dg-poisson/cpp/plot.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/dg-poisson/python/demo_dg-poisson.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/parallel-refinement/python/demo_parallel-refinement.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/adaptive-poisson/python/demo_adaptive-poisson.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/advection-diffusion/python/demo_advection-diffusion.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/submesh/python/demo_submesh.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/interpolation/python/demo_interpolation.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/dg-advection-diffusion/python/demo_dg-advection-diffusion.py /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64/usr/share/dolfin/demo/undocumented/curl-curl/python/demo_curl-curl.py DEPRECATION WARNING: python2 invoked with /usr/bin/python. Use /usr/bin/python3 or /usr/bin/python2 /usr/bin/python will be removed or switched to Python 3 in the future. If you cannot make the switch now, please follow instructions at https://fedoraproject.org/wiki/Changes/Avoid_usr_bin_python_in_RPM_Build#Quick_Opt-Out DEPRECATION WARNING: python2 invoked with /usr/bin/python. Use /usr/bin/python3 or /usr/bin/python2 /usr/bin/python will be removed or switched to Python 3 in the future. If you cannot make the switch now, please follow instructions at https://fedoraproject.org/wiki/Changes/Avoid_usr_bin_python_in_RPM_Build#Quick_Opt-Out + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs '' '' *** WARNING: mangling shebang in /usr/bin/dolfin-plot from #!/usr/bin/env python to #!/usr/bin/python2. This will become an ERROR, fix it manually! *** WARNING: mangling shebang in /usr/bin/dolfin-order from #!/usr/bin/env python to #!/usr/bin/python2. This will become an ERROR, fix it manually! *** WARNING: mangling shebang in /usr/bin/dolfin-convert from #!/usr/bin/env python to #!/usr/bin/python2. This will become an ERROR, fix it manually! Processing files: dolfin-2017.2.0-1.fc29.x86_64 Provides: dolfin = 2017.2.0-1.fc29 dolfin(x86-64) = 2017.2.0-1.fc29 libdolfin.so.2017.2()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/bash /usr/bin/python2 libblas.so.3()(64bit) libboost_filesystem.so.1.66.0()(64bit) libboost_iostreams.so.1.66.0()(64bit) libboost_program_options.so.1.66.0()(64bit) libboost_system.so.1.66.0()(64bit) libboost_timer.so.1.66.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcholmod.so.3()(64bit) libdolfin.so.2017.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libhdf5.so.10()(64bit) liblapack.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libumfpack.so.5()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: dolfin-devel-2017.2.0-1.fc29.x86_64 Provides: dolfin-devel = 2017.2.0-1.fc29 dolfin-devel(x86-64) = 2017.2.0-1.fc29 pkgconfig(dolfin) = 2017.2.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config Processing files: dolfin-demo-2017.2.0-1.fc29.x86_64 Provides: dolfin-demo = 2017.2.0-1.fc29 dolfin-demo(x86-64) = 2017.2.0-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/bash Processing files: dolfin-debugsource-2017.2.0-1.fc29.x86_64 Provides: dolfin-debugsource = 2017.2.0-1.fc29 dolfin-debugsource(x86-64) = 2017.2.0-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: dolfin-debuginfo-2017.2.0-1.fc29.x86_64 Provides: debuginfo(build-id) = 1ca159e7eca2108d4b0213a0c161c876ce90a9b9 dolfin-debuginfo = 2017.2.0-1.fc29 dolfin-debuginfo(x86-64) = 2017.2.0-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: dolfin-debugsource(x86-64) = 2017.2.0-1.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64 Wrote: /builddir/build/RPMS/dolfin-2017.2.0-1.fc29.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-devel-2017.2.0-1.fc29.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-demo-2017.2.0-1.fc29.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debugsource-2017.2.0-1.fc29.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debuginfo-2017.2.0-1.fc29.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.A7wMCc + umask 022 + cd /builddir/build/BUILD + cd dolfin-2017.2.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/dolfin-2017.2.0-1.fc29.x86_64 + exit 0 Finish: rpmbuild dolfin-2017.2.0-1.fc29.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/742937-fedora-rawhide-x86_64-1524142205.806264/root/var/log/dnf.log /var/lib/mock/742937-fedora-rawhide-x86_64-1524142205.806264/root/var/log/dnf.librepo.log /var/lib/mock/742937-fedora-rawhide-x86_64-1524142205.806264/root/var/log/dnf.rpm.log Finish: build phase for dolfin-2017.2.0-1.fc29.src.rpm INFO: Done(/var/lib/copr-rpmbuild/results/dolfin-2017.2.0-1.fc29.src.rpm) Config(child) 11 minutes 47 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run