Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/mshr.spec'], chrootPath='/var/lib/mock/743008-fedora-rawhide-x86_64-1524149043.970179/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'eca6603de7034aba85523ed6862a30db', '-D', '/var/lib/mock/743008-fedora-rawhide-x86_64-1524149043.970179/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/mshr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/mshr-2017.2.0-1.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/mshr.spec'], chrootPath='/var/lib/mock/743008-fedora-rawhide-x86_64-1524149043.970179/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=True) Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9d803fd631604c74b61803ed82f41edf', '-D', '/var/lib/mock/743008-fedora-rawhide-x86_64-1524149043.970179/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/mshr.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.PvX3aq + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf mshr-2017.2.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/mshr-2017.2.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd mshr-2017.2.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/cat /builddir/build/SOURCES/mshr-cache-cmake-install-dir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/mshr-optional-use-system-packages.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/mshr-update-for-system-cgal.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/mshr-update-for-system-tetgen.patch + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.d5s0OC + umask 022 + cd /builddir/build/BUILD + cd mshr-2017.2.0 + rm -rf build + mkdir build ~/build/BUILD/mshr-2017.2.0/build ~/build/BUILD/mshr-2017.2.0 + pushd build + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DUSE_SYSTEM_TETGEN=ON -DUSE_SYSTEM_CGAL=ON -DENABLE_SWIG_BINDINGS=OFF -DINSTALL_CMAKE_DIR=/usr/lib64/cmake/mshr -DINSTALL_LIB_DIR=/usr/lib64 .. -- The C compiler identification is GNU 8.0.1 -- The CXX compiler identification is GNU 8.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- __cplusplus is 201402 -- --> Do not link with Boost.Thread -- Boost version: 1.66.0 -- Boost include dirs: /usr/include -- Boost libraries: -- Found TETGEN: /usr/lib64/libtet.so -- Boost version: 1.66.0 -- Found the following Boost libraries: -- system -- filesystem -- program_options -- Targetting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.3.4", minimum required is "2.91.0") -- Disabling building command line client mshrable -- Testing disabled BUILDSTDERR: CMake Warning at /usr/lib64/cmake/CGAL/CGAL_enable_end_of_configuration_hook.cmake:32 (message): BUILDSTDERR: ======================================================================= BUILDSTDERR: CGAL performance notice: BUILDSTDERR: The variable CMAKE_BUILD_TYPE is set to "". For performance reasons, you BUILDSTDERR: should set CMAKE_BUILD_TYPE to "Release". BUILDSTDERR: Set CGAL_DO_NOT_WARN_ABOUT_CMAKE_BUILD_TYPE to TRUE if you want to disable BUILDSTDERR: this warning. BUILDSTDERR: ======================================================================= BUILDSTDERR: Call Stack (most recent call first): BUILDSTDERR: CMakeLists.txt:9999 (CGAL_run_at_the_end_of_configuration) -- Configuring done -- Generating done BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: CMAKE_CXX_FLAGS_RELEASE BUILDSTDERR: CMAKE_C_FLAGS_RELEASE BUILDSTDERR: CMAKE_Fortran_FLAGS_RELEASE BUILDSTDERR: INCLUDE_INSTALL_DIR BUILDSTDERR: LIB_INSTALL_DIR BUILDSTDERR: LIB_SUFFIX BUILDSTDERR: SHARE_INSTALL_PREFIX BUILDSTDERR: SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/mshr-2017.2.0/build + make -j2 /usr/bin/cmake -H/builddir/build/BUILD/mshr-2017.2.0 -B/builddir/build/BUILD/mshr-2017.2.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/depend make[2]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' cd /builddir/build/BUILD/mshr-2017.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/mshr-2017.2.0 /builddir/build/BUILD/mshr-2017.2.0 /builddir/build/BUILD/mshr-2017.2.0/build /builddir/build/BUILD/mshr-2017.2.0/build /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles/mshr.dir/DependInfo.cmake --color= Scanning dependencies of target mshr make[2]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[2]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' [ 10%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o [ 10%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -std=c++11 -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/ASCFileReader.cpp /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -std=c++11 -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/CSGCGALDomain2D.cpp [ 15%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -std=c++11 -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/CSGCGALDomain3D.cpp [ 20%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -std=c++11 -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/CSGCGALMeshGenerator2D.cpp [ 25%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -std=c++11 -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/CSGCGALMeshGenerator3D.cpp [ 30%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -std=c++11 -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/CSGGeometries3D.cpp [ 35%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -std=c++11 -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/CSGGeometry.cpp [ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -std=c++11 -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/CSGOperators.cpp [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS 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CMakeFiles/mshr.dir/src/Meshes.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/Meshes.cpp [ 75%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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-Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -std=c++11 -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c /builddir/build/BUILD/mshr-2017.2.0/src/SurfaceReconstruction.cpp BUILDSTDERR: /builddir/build/BUILD/mshr-2017.2.0/src/SurfaceReconstruction.cpp: In static member function 'static void mshr::SurfaceReconstruction::reconstruct(const std::vector&, const std::vector&, std::vector >&, std::vector >&, double)': BUILDSTDERR: /builddir/build/BUILD/mshr-2017.2.0/src/SurfaceReconstruction.cpp:235:74: warning: 'typename CGAL::Kernel_traits::value_type>::Kernel::FT CGAL::compute_average_spacing(InputIterator, InputIterator, unsigned int) [with ConcurrencyTag = CGAL::Sequential_tag; InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; typename CGAL::Kernel_traits::value_type>::Kernel::FT = double]' is deprecated: you are using the deprecated V1 API of CGAL::compute_average_spacing(), please update your code [-Wdeprecated-declarations] BUILDSTDERR: 6 /* knn = 1 ring */); BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/CGAL/Poisson_reconstruction_function.h:52, BUILDSTDERR: from /builddir/build/BUILD/mshr-2017.2.0/src/SurfaceReconstruction.cpp:30: BUILDSTDERR: /usr/include/CGAL/compute_average_spacing.h:302:1: note: declared here BUILDSTDERR: compute_average_spacing( BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: /builddir/build/BUILD/mshr-2017.2.0/src/SurfaceReconstruction.cpp:235:74: warning: 'typename CGAL::Kernel_traits::value_type>::Kernel::FT CGAL::compute_average_spacing(InputIterator, InputIterator, unsigned int) [with ConcurrencyTag = CGAL::Sequential_tag; InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; typename CGAL::Kernel_traits::value_type>::Kernel::FT = double]' is deprecated: you are using the deprecated V1 API of CGAL::compute_average_spacing(), please update your code [-Wdeprecated-declarations] BUILDSTDERR: 6 /* knn = 1 ring */); BUILDSTDERR: ^ BUILDSTDERR: In file included from /usr/include/CGAL/Poisson_reconstruction_function.h:52, BUILDSTDERR: from /builddir/build/BUILD/mshr-2017.2.0/src/SurfaceReconstruction.cpp:30: BUILDSTDERR: /usr/include/CGAL/compute_average_spacing.h:302:1: note: declared here BUILDSTDERR: compute_average_spacing( BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/bin/c++ -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"2017.2.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Dmshr_EXPORTS -I/builddir/build/BUILD/mshr-2017.2.0/include -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3.6/site-packages/ffc/backends/ufc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -std=c++0x -Wall -O2 -g -pipe -Wall 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--as-needed -shared -Wl,-soname,libmshr.so.2017.2 -o libmshr.so.2017.2.0 CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o CMakeFiles/mshr.dir/src/Meshes.cpp.o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/lib64/libboost_system.so /usr/lib64/libboost_filesystem.so /usr/lib64/libboost_program_options.so /usr/lib64/libgmp.so /usr/lib64/libmpfr.so -ltet /usr/lib64/libdolfin.so.2017.2.0 /usr/lib64/libboost_system.so /usr/lib64/libboost_filesystem.so /usr/lib64/libboost_program_options.so /usr/lib64/libgmp.so /usr/lib64/libmpfr.so -ltet /usr/lib64/libboost_timer.so /usr/lib64/libboost_chrono.so /usr/lib64/libboost_system.so /lib64/libhdf5.so /lib64/libsz.so /lib64/libz.so /lib64/libdl.so -lm /usr/bin/cmake -E cmake_symlink_library libmshr.so.2017.2.0 libmshr.so.2017.2 libmshr.so make[2]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' [100%] Built target mshr make[1]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles 0 + popd ~/build/BUILD/mshr-2017.2.0 + pushd python ~/build/BUILD/mshr-2017.2.0/python ~/build/BUILD/mshr-2017.2.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' -- The C compiler identification is GNU 8.0.1 -- The CXX compiler identification is GNU 8.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /usr/bin/python3.6 (found version "3.6.5") -- Found PythonLibs: /usr/lib64/libpython3.6m.so -- Performing Test HAS_CPP14_FLAG -- Performing Test HAS_CPP14_FLAG - Success -- Configuring done -- Generating done -- Build files have been written to: /builddir/build/BUILD/mshr-2017.2.0/python/build ['/usr/include', '/usr/include', '/builddir/build/BUILD/mshr-2017.2.0/include'] running build running build_py creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/mshr copying mshr/__init__.py -> build/lib.linux-x86_64-3.6/mshr running build_ext building 'mshr.cpp' extension creating build/temp.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/src gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection -fPIC -I/usr/include -I/usr/include -I/builddir/build/BUILD/mshr-2017.2.0/include -I/usr/include/python3.6m -c src/mshr.cpp -o build/temp.linux-x86_64-3.6/src/mshr.o g++ -pthread -shared -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -g -flto -fuse-linker-plugin -ffat-lto-objects -flto-partition=none -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection build/temp.linux-x86_64-3.6/src/mshr.o -L/builddir/build/BUILD/mshr-2017.2.0/build -L/usr/lib64 -lmshr -lpython3.6m -o build/lib.linux-x86_64-3.6/mshr/cpp.cpython-36m-x86_64-linux-gnu.so + sleep 1 + popd ~/build/BUILD/mshr-2017.2.0 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.fpglLX + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64 + cd mshr-2017.2.0 + pushd build ~/build/BUILD/mshr-2017.2.0/build ~/build/BUILD/mshr-2017.2.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -H/builddir/build/BUILD/mshr-2017.2.0 -B/builddir/build/BUILD/mshr-2017.2.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' /usr/bin/make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/depend make[2]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' cd /builddir/build/BUILD/mshr-2017.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/mshr-2017.2.0 /builddir/build/BUILD/mshr-2017.2.0 /builddir/build/BUILD/mshr-2017.2.0/build /builddir/build/BUILD/mshr-2017.2.0/build /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles/mshr.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' /usr/bin/make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[2]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' make[2]: Nothing to be done for 'CMakeFiles/mshr.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' [100%] Built target mshr make[1]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/libmshr.so.2017.2.0 -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/libmshr.so.2017.2 -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/libmshr.so -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/OFFFileReader.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/MeshGenerator.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGGeometries3D.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGPrimitive.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/ASCFileReader.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/SurfaceReconstruction.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGPrimitives2D.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/SurfaceConsistency.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGOperators.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/GlobalInitializer.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/DolfinMeshUtils.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGGeometry.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/Meshes.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/STLFileReader.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/include/mshr/CSGPrimitives3D.h -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/cmake/mshr/mshr-config.cmake -- Installing: /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/cmake/mshr/use-mshr.cmake + install -d /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples + install /builddir/build/BUILD/mshr-2017.2.0/demo/python/classic.py /builddir/build/BUILD/mshr-2017.2.0/demo/python/csg-subdomains-2D.py /builddir/build/BUILD/mshr-2017.2.0/demo/python/deathstar.py /builddir/build/BUILD/mshr-2017.2.0/demo/python/extrude.py /builddir/build/BUILD/mshr-2017.2.0/demo/python/icecream.py /builddir/build/BUILD/mshr-2017.2.0/demo/python/materials.py /builddir/build/BUILD/mshr-2017.2.0/demo/python/propeller.py /builddir/build/BUILD/mshr-2017.2.0/demo/python/remove_degenerate.py /builddir/build/BUILD/mshr-2017.2.0/demo/python/simple-csg-3D.py /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples + make -j2 /usr/bin/cmake -H/builddir/build/BUILD/mshr-2017.2.0 -B/builddir/build/BUILD/mshr-2017.2.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/depend make[2]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' cd /builddir/build/BUILD/mshr-2017.2.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/mshr-2017.2.0 /builddir/build/BUILD/mshr-2017.2.0 /builddir/build/BUILD/mshr-2017.2.0/build /builddir/build/BUILD/mshr-2017.2.0/build /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles/mshr.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[2]: Entering directory '/builddir/build/BUILD/mshr-2017.2.0/build' make[2]: Nothing to be done for 'CMakeFiles/mshr.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' [100%] Built target mshr make[1]: Leaving directory '/builddir/build/BUILD/mshr-2017.2.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/mshr-2017.2.0/build/CMakeFiles 0 + popd ~/build/BUILD/mshr-2017.2.0 + pushd python ~/build/BUILD/mshr-2017.2.0/python ~/build/BUILD/mshr-2017.2.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -mcet -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64 ['/usr/include', '/usr/include', '/builddir/build/BUILD/mshr-2017.2.0/include'] running install running install_lib creating /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/python3.6 creating /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/python3.6/site-packages creating /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/python3.6/site-packages/mshr copying build/lib.linux-x86_64-3.6/mshr/cpp.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/python3.6/site-packages/mshr copying build/lib.linux-x86_64-3.6/mshr/__init__.py -> /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/python3.6/site-packages/mshr byte-compiling /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/python3.6/site-packages/mshr/__init__.py to __init__.cpython-36.pyc writing byte-compilation script '/tmp/tmprk28k150.py' /usr/bin/python3 /tmp/tmprk28k150.py removing /tmp/tmprk28k150.py running install_egg_info running egg_info creating mshr.egg-info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt writing manifest file 'mshr.egg-info/SOURCES.txt' reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/python3.6/site-packages/mshr-0.0.1-py3.6.egg-info running install_scripts + popd + /usr/lib/rpm/check-buildroot ~/build/BUILD/mshr-2017.2.0 + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/lib64/python3.6 using /usr/bin/python3.6 /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples/simple-csg-3D.py /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples/remove_degenerate.py /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples/propeller.py /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples/materials.py /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples/icecream.py /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples/extrude.py /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples/deathstar.py /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples/csg-subdomains-2D.py /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64/usr/share/mshr/examples/classic.py BUILDSTDERR: DEPRECATION WARNING: python2 invoked with /usr/bin/python. BUILDSTDERR: Use /usr/bin/python3 or /usr/bin/python2 BUILDSTDERR: /usr/bin/python will be removed or switched to Python 3 in the future. BUILDSTDERR: If you cannot make the switch now, please follow instructions at https://fedoraproject.org/wiki/Changes/Avoid_usr_bin_python_in_RPM_Build#Quick_Opt-Out BUILDSTDERR: DEPRECATION WARNING: python2 invoked with /usr/bin/python. BUILDSTDERR: Use /usr/bin/python3 or /usr/bin/python2 BUILDSTDERR: /usr/bin/python will be removed or switched to Python 3 in the future. BUILDSTDERR: If you cannot make the switch now, please follow instructions at https://fedoraproject.org/wiki/Changes/Avoid_usr_bin_python_in_RPM_Build#Quick_Opt-Out + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs '' '' BUILDSTDERR: *** WARNING: ./usr/share/mshr/examples/simple-csg-3D.py is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/share/mshr/examples/remove_degenerate.py is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/share/mshr/examples/propeller.py is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/share/mshr/examples/materials.py is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/share/mshr/examples/icecream.py is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/share/mshr/examples/extrude.py is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/share/mshr/examples/deathstar.py is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/share/mshr/examples/csg-subdomains-2D.py is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/share/mshr/examples/classic.py is executable but has empty or no shebang, removing executable bit Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.1pDUgz + umask 022 + cd /builddir/build/BUILD + cd mshr-2017.2.0 + exit 0 Processing files: mshr-2017.2.0-1.fc29.x86_64 Provides: libmshr.so.2017.2()(64bit) mshr = 2017.2.0-1.fc29 mshr(x86-64) = 2017.2.0-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libboost_filesystem.so.1.66.0()(64bit) libboost_system.so.1.66.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdolfin.so.2017.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgmp.so.10()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmpfr.so.4()(64bit) libmshr.so.2017.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtet.so.0()(64bit) rtld(GNU_HASH) Processing files: python3-mshr-2017.2.0-1.fc29.x86_64 Provides: python3-mshr = 2017.2.0-1.fc29 python3-mshr(x86-64) = 2017.2.0-1.fc29 python3.6dist(mshr) = 0.0.1 python3dist(mshr) = 0.0.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libmshr.so.2017.2()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.6m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) python(abi) = 3.6 rtld(GNU_HASH) Processing files: mshr-devel-2017.2.0-1.fc29.x86_64 Provides: cmake(mshr) mshr-devel = 2017.2.0-1.fc29 mshr-devel(x86-64) = 2017.2.0-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) Processing files: mshr-demo-2017.2.0-1.fc29.x86_64 Provides: mshr-demo = 2017.2.0-1.fc29 mshr-demo(x86-64) = 2017.2.0-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64 Wrote: /builddir/build/RPMS/mshr-2017.2.0-1.fc29.x86_64.rpm Wrote: /builddir/build/RPMS/python3-mshr-2017.2.0-1.fc29.x86_64.rpm Wrote: /builddir/build/RPMS/mshr-devel-2017.2.0-1.fc29.x86_64.rpm Wrote: /builddir/build/RPMS/mshr-demo-2017.2.0-1.fc29.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.bKQeuv + umask 022 + cd /builddir/build/BUILD + cd mshr-2017.2.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/mshr-2017.2.0-1.fc29.x86_64 + exit 0 Child return code was: 0