Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/velvet.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1684275468.321471/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fb79b6b2c50>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._txyw90p:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._txyw90p:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'cd3ff9573916428780279f4c0de8905a', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1684275468.321471/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._txyw90p:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/velvet.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
error: %changelog not in descending chronological order
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1684195200
Wrote: /builddir/build/SRPMS/velvet-1.2.10-1.20230516221713962624.pr3.fc39.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/velvet.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1684275468.321471/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fb79b6b2c50>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._txyw90p:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._txyw90p:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0fcecd881c854ef5bb44e3cf65fa0d56', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1684275468.321471/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv._txyw90p:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/velvet.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
error: %changelog not in descending chronological order
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1684195200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.9t2Bs2
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf velvet-1.2.10
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/velvet-1.2.10.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd velvet-1.2.10
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.lpy7a9
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd velvet-1.2.10
+ make 'CFLAGS=-fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
rm obj/*.o obj/dbg/*.o 
rm: cannot remove 'obj/*.o': No such file or directory
rm: cannot remove 'obj/dbg/*.o': No such file or directory
make: [Makefile:51: cleanobj] Error 1 (ignored)
mkdir -p obj
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/tightString.c -o obj/tightString.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/run.c -o obj/run.o 
In file included from src/run.h:34,
                 from src/run.c:31:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/splay.c -o obj/splay.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/splayTable.c -o obj/splayTable.o 
src/splayTable.c: In function 'inputSequenceArrayIntoSplayTableAndArchive':
src/splayTable.c:1060:49: warning: variable 'refElem' set but not used [-Wunused-but-set-variable]
 1060 |                                         RefInfo refElem;
      |                                                 ^~~~~~~
src/splayTable.c: In function 'scanReferenceSequences':
src/splayTable.c:877:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  877 |                 fgets(line, MAXLINE, file);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/splayTable.c: In function 'scanBinaryReferenceSequences':
src/splayTable.c:933:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  933 |                 fgets(line, MAXLINE, file);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/splayTable.c:949:25: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
  949 |                         fgets(line, MAXLINE, file);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/splayTable.c: In function 'inputSequenceArrayIntoSplayTableAndArchive':
src/splayTable.c:1207:41: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1207 |                                         fgets(line, MAXLINE, seqFile);
      |                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/splayTable.c:1213:41: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1213 |                                         fgets(line, MAXLINE, seqFile);
      |                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/graph.c -o obj/graph.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/run2.c -o obj/run2.o 
In file included from src/run.h:34,
                 from src/run2.c:26:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/fibHeap.c -o obj/fibHeap.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/fib.c -o obj/fib.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/concatenatedGraph.c -o obj/concatenatedGraph.o 
In file included from src/concatenatedGraph.c:25:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/passageMarker.c -o obj/passageMarker.o 
In file included from src/passageMarker.c:29:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:964,
                 from src/passageMarker.c:22:
In function 'sprintf',
    inlined from 'readPassageMarker' at src/passageMarker.c:291:3:
/usr/include/bits/stdio2.h:30:10: warning: '__sprintf_chk' argument 5 overlaps destination object '_13' [-Wrestrict]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
In function 'sprintf',
    inlined from 'readPassageMarker' at src/passageMarker.c:288:3:
/usr/include/bits/stdio2.h:30:10: warning: '__sprintf_chk' argument 5 overlaps destination object '_13' [-Wrestrict]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
In function 'sprintf',
    inlined from 'readPassageMarker' at src/passageMarker.c:298:3:
/usr/include/bits/stdio2.h:30:10: warning: '__sprintf_chk' argument 5 overlaps destination object '_13' [-Wrestrict]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
In function 'sprintf',
    inlined from 'readPassageMarker' at src/passageMarker.c:296:3:
/usr/include/bits/stdio2.h:30:10: warning: '__sprintf_chk' argument 5 overlaps destination object '_13' [-Wrestrict]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/graphStats.c -o obj/graphStats.o 
In file included from src/graphStats.c:28:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/correctedGraph.c -o obj/correctedGraph.o 
In file included from src/correctedGraph.c:26:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/dfib.c -o obj/dfib.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/dfibHeap.c -o obj/dfibHeap.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/recycleBin.c -o obj/recycleBin.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/readSet.c -o obj/readSet.o 
src/readSet.c: In function 'readFastXFile':
src/readSet.c:641:21: warning: assignment to 'gzFile' {aka 'struct gzFile_s *'} from incompatible pointer type 'AutoFile *' [-Wincompatible-pointer-types]
  641 |         file.gzFile = file.autoFile = NULL;
      |                     ^
src/readSet.c: In function 'readFastXPair':
src/readSet.c:680:22: warning: assignment to 'gzFile' {aka 'struct gzFile_s *'} from incompatible pointer type 'AutoFile *' [-Wincompatible-pointer-types]
  680 |         file1.gzFile = file1.autoFile = NULL;
      |                      ^
src/readSet.c:681:22: warning: assignment to 'gzFile' {aka 'struct gzFile_s *'} from incompatible pointer type 'AutoFile *' [-Wincompatible-pointer-types]
  681 |         file2.gzFile = file2.autoFile = NULL;
      |                      ^
In file included from /usr/include/stdio.h:964,
                 from src/readSet.c:22:
In function 'snprintf',
    inlined from 'addMapping' at src/readSet.c:750:4,
    inlined from 'readCigar' at src/readSet.c:796:6:
/usr/include/bits/stdio2.h:54:10: warning: '__snprintf_chk' argument 6 overlaps destination object 'buffer' [-Wrestrict]
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
src/readSet.c: In function 'readCigar':
src/readSet.c:783:125: note: destination object referenced by 'restrict'-qualified argument 1 was declared here
  783 | static void readCigar(char * cigar, boolean orientation, Coordinate pos, char * seq, ReferenceCoordinate * refCoord, char * buffer, SequencesWriter * seqWriteInfo, RefInfoList ** refTail, size_t * buffer_size) {
      |                                                                                                                      ~~~~~~~^~~~~~
In function 'snprintf',
    inlined from 'addMapping' at src/readSet.c:748:4,
    inlined from 'readCigar' at src/readSet.c:796:6:
/usr/include/bits/stdio2.h:54:10: warning: '__snprintf_chk' argument 6 overlaps destination object 'buffer' [-Wrestrict]
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
src/readSet.c: In function 'readCigar':
src/readSet.c:783:125: note: destination object referenced by 'restrict'-qualified argument 1 was declared here
  783 | static void readCigar(char * cigar, boolean orientation, Coordinate pos, char * seq, ReferenceCoordinate * refCoord, char * buffer, SequencesWriter * seqWriteInfo, RefInfoList ** refTail, size_t * buffer_size) {
      |                                                                                                                      ~~~~~~~^~~~~~
src/readSet.c: In function 'importReadSet':
src/readSet.c:1613:25: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation]
 1613 |                         strncpy(sequence + bpCount, line, lineLength);
      |                         ^
src/readSet.c:1612:38: note: length computed here
 1612 |                         lineLength = strlen(line) - 1;
      |                                      ^~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/binarySequences.c -o obj/binarySequences.o 
src/binarySequences.c: In function 'importCnyReadSet':
src/binarySequences.c:314:33: warning: variable 'refElem' set but not used [-Wunused-but-set-variable]
  314 |                         RefInfo refElem;
      |                                 ^~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/shortReadPairs.c -o obj/shortReadPairs.o 
In file included from src/shortReadPairs.c:27:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/locallyCorrectedGraph.c -o obj/locallyCorrectedGraph.o 
In file included from src/locallyCorrectedGraph.c:25:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/graphReConstruction.c -o obj/graphReConstruction.o 
In file included from src/graphReConstruction.c:33:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/roadMap.c -o obj/roadMap.o 
In file included from src/roadMap.c:26:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/preGraph.c -o obj/preGraph.o 
src/preGraph.c: In function 'addPreArcToPreNode_pg':
src/preGraph.c:165:29: warning: taking address of packed member of 'struct preNode_st' may result in an unaligned pointer value [-Waddress-of-packed-member]
  165 |                 preArcPtr = &(preNode->preArcRight);
      |                             ^~~~~~~~~~~~~~~~~~~~~~~
src/preGraph.c:167:29: warning: taking address of packed member of 'struct preNode_st' may result in an unaligned pointer value [-Waddress-of-packed-member]
  167 |                 preArcPtr = &(preNode->preArcLeft);
      |                             ^~~~~~~~~~~~~~~~~~~~~~
src/preGraph.c: In function 'removePreArcFromList_pg':
src/preGraph.c:285:29: warning: taking address of packed member of 'struct preNode_st' may result in an unaligned pointer value [-Waddress-of-packed-member]
  285 |                 preArcPtr = &(preNode->preArcRight);
      |                             ^~~~~~~~~~~~~~~~~~~~~~~
src/preGraph.c:287:29: warning: taking address of packed member of 'struct preNode_st' may result in an unaligned pointer value [-Waddress-of-packed-member]
  287 |                 preArcPtr = &(preNode->preArcLeft);
      |                             ^~~~~~~~~~~~~~~~~~~~~~
In file included from src/run.h:34,
                 from src/preGraph.c:35:
src/graph.h: At top level:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/preGraphConstruction.c -o obj/preGraphConstruction.o 
src/preGraphConstruction.c: In function 'createPreNodes':
src/preGraphConstruction.c:414:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  414 |         if (sequenceCount_pg(preGraph) > 0 && !fgets(line, lineLength, file))
      |         ^~
src/preGraphConstruction.c:416:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  416 |                 seqReadInfo->m_pFile = file;
      |                 ^~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/concatenatedPreGraph.c -o obj/concatenatedPreGraph.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/readCoherentGraph.c -o obj/readCoherentGraph.o 
In file included from src/readCoherentGraph.c:25:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/utility.c -o obj/utility.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/kmer.c -o obj/kmer.o 
src/kmer.c: In function 'pushNucleotide':
src/kmer.c:419:15: warning: taking address of packed member of 'struct kmer_st' may result in an unaligned pointer value [-Waddress-of-packed-member]
  419 |         ptr = kmer->longlongs;
      |               ^~~~
src/kmer.c: At top level:
src/kmer.c:31:22: warning: 'charLeftFilter' defined but not used [-Wunused-const-variable=]
   31 | static const uint8_t charLeftFilter = (uint8_t) 3 << 6;
      |                      ^~~~~~~~~~~~~~
src/kmer.c:30:23: warning: 'intLeftFilter' defined but not used [-Wunused-const-variable=]
   30 | static const uint16_t intLeftFilter = (uint16_t) 3 << 14;
      |                       ^~~~~~~~~~~~~
src/kmer.c:29:23: warning: 'longLeftFilter' defined but not used [-Wunused-const-variable=]
   29 | static const uint32_t longLeftFilter = (uint32_t) 3 << 30;
      |                       ^~~~~~~~~~~~~~
src/kmer.c:28:23: warning: 'longLongLeftFilter' defined but not used [-Wunused-const-variable=]
   28 | static const uint64_t longLongLeftFilter = (uint64_t) 3 << 62;
      |                       ^~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/scaffold.c -o obj/scaffold.o 
In file included from src/scaffold.c:32:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/kmerOccurenceTable.c -o obj/kmerOccurenceTable.o 
In file included from src/kmerOccurenceTable.c:27:
src/graph.h:178:20: warning: inline function 'setShortReadMarkerOffset' declared but never defined
  178 | extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:177:27: warning: inline function 'getShortReadMarkerOffset' declared but never defined
  177 | extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:174:20: warning: inline function 'setShortReadMarkerPosition' declared but never defined
  174 | extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
src/graph.h:173:26: warning: inline function 'getShortReadMarkerPosition' declared but never defined
  173 | extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/allocArray.c -o obj/allocArray.o 
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -D MAXKMERLENGTH=31 -D CATEGORIES=2 -c src/autoOpen.c -o obj/autoOpen.o 
src/autoOpen.c: In function 'pcloseNoStderr':
src/autoOpen.c:49:13: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
   49 |         int rc, status;
      |             ^~
src/autoOpen.c: At top level:
src/autoOpen.c:56:19: warning: duplicate 'const' declaration specifier [-Wduplicate-decl-specifier]
   56 | static const char const* decompressors[] = {"","pigz", "gunzip", "pbunzip2", "bunzip2", NULL};
      |                   ^~~~~
src/autoOpen.c: In function 'popenNoStderr':
src/autoOpen.c:28:17: warning: ignoring return value of 'dup' declared with attribute 'warn_unused_result' [-Wunused-result]
   28 |                 dup(out[1]);
      |                 ^~~~~~~~~~~
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o velveth obj/tightString.o obj/run.o obj/recycleBin.o obj/splay.o obj/splayTable.o obj/readSet.o obj/binarySequences.o obj/utility.o obj/kmer.o obj/kmerOccurenceTable.o obj/autoOpen.o -lz -lm
gcc -fPIE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o velvetg obj/tightString.o obj/graph.o obj/run2.o obj/fibHeap.o obj/fib.o obj/concatenatedGraph.o obj/passageMarker.o obj/graphStats.o obj/correctedGraph.o obj/dfib.o obj/dfibHeap.o obj/recycleBin.o obj/readSet.o obj/binarySequences.o obj/shortReadPairs.o obj/scaffold.o obj/locallyCorrectedGraph.o obj/graphReConstruction.o obj/roadMap.o obj/preGraph.o obj/preGraphConstruction.o obj/concatenatedPreGraph.o obj/readCoherentGraph.o obj/utility.o obj/kmer.o obj/kmerOccurenceTable.o obj/allocArray.o obj/autoOpen.o -lz -lm
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.vIkVmf
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64
++ dirname /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd velvet-1.2.10
+ rm -rf '%{buidroot}'
+ mkdir -p /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64/usr/bin
+ install -p -m 0775 velvetg /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64/usr/bin
+ install -p -m 0775 velveth /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.2.10-1.20230516221713962624.pr3.fc39 --unique-debug-suffix -1.2.10-1.20230516221713962624.pr3.fc39.x86_64 --unique-debug-src-base velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/velvet-1.2.10
extracting debug info from /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64/usr/bin/velvetg
extracting debug info from /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64/usr/bin/velveth
original debug info size: 1564kB, size after compression: 1504kB
/usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
1550 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64
Provides: velvet = 1.2.10-1.20230516221713962624.pr3.fc39 velvet(x86-64) = 1.2.10-1.20230516221713962624.pr3.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0.2)(64bit) rtld(GNU_HASH)
Processing files: velvet-debugsource-1.2.10-1.20230516221713962624.pr3.fc39.x86_64
Provides: velvet-debugsource = 1.2.10-1.20230516221713962624.pr3.fc39 velvet-debugsource(x86-64) = 1.2.10-1.20230516221713962624.pr3.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: velvet-debuginfo-1.2.10-1.20230516221713962624.pr3.fc39.x86_64
Provides: debuginfo(build-id) = 64d31591f27d2ee56ab43628a86bc55e36387953 debuginfo(build-id) = 9ad67b92c264299c47c12903131581728689da56 velvet-debuginfo = 1.2.10-1.20230516221713962624.pr3.fc39 velvet-debuginfo(x86-64) = 1.2.10-1.20230516221713962624.pr3.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: velvet-debugsource(x86-64) = 1.2.10-1.20230516221713962624.pr3.fc39
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64
Wrote: /builddir/build/RPMS/velvet-debugsource-1.2.10-1.20230516221713962624.pr3.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/velvet-debuginfo-1.2.10-1.20230516221713962624.pr3.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.eN3B6W
+ umask 022
+ cd /builddir/build/BUILD
+ cd velvet-1.2.10
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/velvet-1.2.10-1.20230516221713962624.pr3.fc39.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.EzF9qo
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf velvet-1.2.10 velvet-1.2.10.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0