Warning: Permanently added '172.25.90.42' (ECDSA) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 736198 --chroot epel-7-x86_64 --detached
Version: 0.17
Task:
{'build_id': 736198,
 'buildroot_pkgs': [],
 'chroot': 'epel-7-x86_64',
 'enable_net': False,
 'fetch_sources_only': True,
 'git_hash': 'b6deb4e5388834eff2c706ba692142b43a99efa8',
 'git_repo': 'giallu/rdkit/rdkit',
 'memory_reqs': 2048,
 'package_name': 'rdkit',
 'package_version': '2017.09.3-2.el7',
 'project_name': 'rdkit',
 'project_owner': 'giallu',
 'repos': [{'id': 'copr_base',
            'name': 'Copr repository',
            'url': 'https://copr-be.cloud.fedoraproject.org/results/giallu/rdkit/epel-7-x86_64/'}],
 'source_json': {'clone_url': 'http://copr-dist-git.fedorainfracloud.org/git/giallu/rdkit/rdkit.git',
                 'committish': 'b6deb4e5388834eff2c706ba692142b43a99efa8'},
 'source_type': 8,
 'submitter': 'giallu',
 'task_id': '736198-epel-7-x86_64',
 'timeout': 64800,
 'use_bootstrap_container': True}

Running: git clone http://copr-dist-git.fedorainfracloud.org/git/giallu/rdkit/rdkit.git /tmp/tmp32oy5plk/rdkit --depth 500 --no-single-branch

cmd: ['git', 'clone', 'http://copr-dist-git.fedorainfracloud.org/git/giallu/rdkit/rdkit.git', '/tmp/tmp32oy5plk/rdkit', '--depth', '500', '--no-single-branch']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/tmp/tmp32oy5plk/rdkit'...

Running: git checkout b6deb4e5388834eff2c706ba692142b43a99efa8

cmd: ['git', 'checkout', 'b6deb4e5388834eff2c706ba692142b43a99efa8']
cwd: /tmp/tmp32oy5plk/rdkit
rc: 0
stdout: 
stderr: Note: checking out 'b6deb4e5388834eff2c706ba692142b43a99efa8'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at b6deb4e... automatic import of rdkit 2017.09.3-2.el7

Running: cp -r . /tmp/tmpb51pq77r

cmd: ['cp', '-r', '.', '/tmp/tmpb51pq77r']
cwd: /tmp/tmp32oy5plk/rdkit
rc: 0
stdout: 
stderr: 

Generated rpkg config:
[distgit]
lookaside = http://copr-dist-git.fedorainfracloud.org/repo/pkgs/%(ns2)s/%(ns1)s/%(pkg)s/%(filename)s/%(hashtype)s/%(hash)s/%(filename)s
anongiturl = http://copr-dist-git.fedorainfracloud.org/git/%(module)s

Running: rpkg -C /tmp/tmp32oy5plk/rpkg.conf sources --outdir /tmp/tmpb51pq77r

cmd: ['rpkg', '-C', '/tmp/tmp32oy5plk/rpkg.conf', 'sources', '--outdir', '/tmp/tmpb51pq77r']
cwd: /tmp/tmp32oy5plk/rdkit
rc: 0
stdout: Downloading Release_2017_09_3.tar.gz
stderr: 

{'task_id': '736198-epel-7-x86_64', 'chroot': 'epel-7-x86_64', 'buildroot_pkgs': [], 'enable_net': False, 'repos': [{'id': 'copr_base', 'name': 'Copr repository', 'url': 'https://copr-be.cloud.fedoraproject.org/results/giallu/rdkit/epel-7-x86_64/'}], 'use_bootstrap_container': True, 'pkg_manager_conf': 'yum', 'timeout': 64800, 'sourcedir': '/tmp/tmpb51pq77r', 'resultdir': '/var/lib/copr-rpmbuild/results', 'config': <configparser.RawConfigParser object at 0x7faa516ec240>, 'logfile': '/var/lib/copr-rpmbuild/main.log'}
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running: unbuffer /usr/bin/mock --buildsrpm --spec /tmp/tmpb51pq77r/rdkit.spec --sources /tmp/tmpb51pq77r --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --define %_disable_source_fetch 0 --uniqueext 1522751158.115147 -r child
WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default...
INFO: mock.py version 1.4.9 starting (python version = 3.6.3)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux disabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux disabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
Start: run
INFO: Start(/tmp/tmpb51pq77r/rdkit.spec)  Config(736198-epel-7-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/736198-epel-7-x86_64-bootstrap-1522751158.115147/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled HW Info plugin
Mock Version: 1.4.9
INFO: Mock Version: 1.4.9
Start(bootstrap): yum install
Yum command has been deprecated, use dnf instead.
See 'man dnf' and 'man yum2dnf' for more information.

copr_base                                                   | 3.0 kB  00:00     
base                                                        | 3.6 kB  00:00     
epel                                                        | 4.7 kB  00:00     
extras                                                      | 3.4 kB  00:00     
sclo                                                        | 2.9 kB  00:00     
sclo-rh                                                     | 3.0 kB  00:00     
updates                                                     | 3.4 kB  00:00     
(1/7): copr_base/primary_db                                 |  10 kB  00:00     
(2/7): epel/primary_db                                      | 6.3 MB  00:00     
(3/7): extras/primary_db                                    | 185 kB  00:00     
(4/7): base/primary_db                                      | 5.7 MB  00:00     
(5/7): sclo/primary_db                                      | 202 kB  00:00     
(6/7): updates/primary_db                                   | 6.9 MB  00:00     
(7/7): sclo-rh/primary_db                                   | 3.2 MB  00:02     
Resolving Dependencies
--> Running transaction check
---> Package distribution-gpg-keys.noarch 0:1.19-1.el7 will be installed
---> Package shadow-utils.x86_64 2:4.1.5.1-24.el7 will be installed
--> Processing Dependency: libselinux >= 1.25.2-1 for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: audit-libs >= 1.6.5 for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: setup for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: rtld(GNU_HASH) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libsemanage.so.1(LIBSEMANAGE_1.0)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libcrypt.so.1(GLIBC_2.2.5)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libc.so.6(GLIBC_2.14)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libattr.so.1(ATTR_1.1)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libacl.so.1(ACL_1.1)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: coreutils for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libsemanage.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libselinux.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libcrypt.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libaudit.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libattr.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libacl.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
---> Package yum.noarch 0:3.4.3-154.el7.centos.1 will be installed
--> Processing Dependency: python(abi) = 2.7 for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: yum-metadata-parser >= 1.1.0 for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: rpm >= 4.11.3-22 for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: python-urlgrabber >= 3.10-8 for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: python >= 2.4 for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: yum-plugin-fastestmirror for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: rpm-python for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: pyxattr for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: python-sqlite for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: python-iniparse for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: pyliblzma for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: pygpgme for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: diffutils for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: cpio for package: yum-3.4.3-154.el7.centos.1.noarch
--> Processing Dependency: /usr/bin/python for package: yum-3.4.3-154.el7.centos.1.noarch
---> Package yum-utils.noarch 0:1.1.31-42.el7 will be installed
--> Processing Dependency: python-kitchen for package: yum-utils-1.1.31-42.el7.noarch
--> Processing Dependency: libxml2-python for package: yum-utils-1.1.31-42.el7.noarch
--> Running transaction check
---> Package audit-libs.x86_64 0:2.7.6-3.el7 will be installed
--> Processing Dependency: libcap-ng.so.0()(64bit) for package: audit-libs-2.7.6-3.el7.x86_64
---> Package coreutils.x86_64 0:8.22-18.el7 will be installed
--> Processing Dependency: ncurses for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libcrypto.so.10(libcrypto.so.10)(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: grep for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: gmp for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: /sbin/install-info for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: /sbin/install-info for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: /bin/sh for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: /bin/sh for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libgmp.so.10()(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libcrypto.so.10()(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libcap.so.2()(64bit) for package: coreutils-8.22-18.el7.x86_64
---> Package cpio.x86_64 0:2.11-25.el7_4 will be installed
---> Package diffutils.x86_64 0:3.3-4.el7 will be installed
---> Package glibc.x86_64 0:2.17-196.el7_4.2 will be installed
--> Processing Dependency: glibc-common = 2.17-196.el7_4.2 for package: glibc-2.17-196.el7_4.2.x86_64
--> Processing Dependency: libgcc for package: glibc-2.17-196.el7_4.2.x86_64
--> Processing Dependency: libfreebl3.so(NSSRAWHASH_3.12.3)(64bit) for package: glibc-2.17-196.el7_4.2.x86_64
--> Processing Dependency: basesystem for package: glibc-2.17-196.el7_4.2.x86_64
--> Processing Dependency: libfreebl3.so()(64bit) for package: glibc-2.17-196.el7_4.2.x86_64
---> Package libacl.x86_64 0:2.2.51-12.el7 will be installed
---> Package libattr.x86_64 0:2.4.46-12.el7 will be installed
---> Package libselinux.x86_64 0:2.5-11.el7 will be installed
--> Processing Dependency: libsepol(x86-64) >= 2.5-6 for package: libselinux-2.5-11.el7.x86_64
--> Processing Dependency: pcre for package: libselinux-2.5-11.el7.x86_64
--> Processing Dependency: libsepol.so.1(LIBSEPOL_1.0)(64bit) for package: libselinux-2.5-11.el7.x86_64
--> Processing Dependency: libsepol.so.1()(64bit) for package: libselinux-2.5-11.el7.x86_64
--> Processing Dependency: libpcre.so.1()(64bit) for package: libselinux-2.5-11.el7.x86_64
---> Package libsemanage.x86_64 0:2.5-8.el7 will be installed
--> Processing Dependency: libustr-1.0.so.1(USTR_1.0.1)(64bit) for package: libsemanage-2.5-8.el7.x86_64
--> Processing Dependency: libustr-1.0.so.1(USTR_1.0)(64bit) for package: libsemanage-2.5-8.el7.x86_64
--> Processing Dependency: bzip2-libs for package: libsemanage-2.5-8.el7.x86_64
--> Processing Dependency: libustr-1.0.so.1()(64bit) for package: libsemanage-2.5-8.el7.x86_64
--> Processing Dependency: libbz2.so.1()(64bit) for package: libsemanage-2.5-8.el7.x86_64
---> Package libxml2-python.x86_64 0:2.9.1-6.el7_2.3 will be installed
--> Processing Dependency: libxml2 = 2.9.1-6.el7_2.3 for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.9.1)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.9.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.8.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.7.3)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.7.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.8)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.6)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.5)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.3)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.28)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.27)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.25)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.23)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.21)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.20)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.2)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.18)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.17)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.16)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.15)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.14)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.12)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.11)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.10)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.1)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.6.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.5.9)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.5.8)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.5.7)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.5.6)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.5.4)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.5.2)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.5.0)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2(LIBXML2_2.4.30)(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libz.so.1()(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libxml2.so.2()(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: libpython2.7.so.1.0()(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
--> Processing Dependency: liblzma.so.5()(64bit) for package: libxml2-python-2.9.1-6.el7_2.3.x86_64
---> Package pygpgme.x86_64 0:0.3-9.el7 will be installed
--> Processing Dependency: libgpgme.so.11(GPGME_1.1)(64bit) for package: pygpgme-0.3-9.el7.x86_64
--> Processing Dependency: libgpgme.so.11(GPGME_1.0)(64bit) for package: pygpgme-0.3-9.el7.x86_64
--> Processing Dependency: libgpgme.so.11()(64bit) for package: pygpgme-0.3-9.el7.x86_64
---> Package pyliblzma.x86_64 0:0.5.3-11.el7 will be installed
---> Package python.x86_64 0:2.7.5-58.el7 will be installed
---> Package python-iniparse.noarch 0:0.4-9.el7 will be installed
---> Package python-kitchen.noarch 0:1.1.1-5.el7 will be installed
--> Processing Dependency: python-chardet for package: python-kitchen-1.1.1-5.el7.noarch
---> Package python-urlgrabber.noarch 0:3.10-8.el7 will be installed
--> Processing Dependency: python-pycurl for package: python-urlgrabber-3.10-8.el7.noarch
---> Package pyxattr.x86_64 0:0.5.1-5.el7 will be installed
---> Package rpm.x86_64 0:4.11.3-25.el7 will be installed
--> Processing Dependency: popt(x86-64) >= 1.10.2.1 for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: libpopt.so.0(LIBPOPT_0)(64bit) for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: curl for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: /usr/bin/db_stat for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: librpmio.so.3()(64bit) for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: librpm.so.3()(64bit) for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: libpopt.so.0()(64bit) for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: libnss3.so()(64bit) for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: liblua-5.1.so()(64bit) for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: libelf.so.1()(64bit) for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: libdb-5.3.so()(64bit) for package: rpm-4.11.3-25.el7.x86_64
---> Package rpm-python.x86_64 0:4.11.3-25.el7 will be installed
--> Processing Dependency: librpmsign.so.1()(64bit) for package: rpm-python-4.11.3-25.el7.x86_64
--> Processing Dependency: librpmbuild.so.3()(64bit) for package: rpm-python-4.11.3-25.el7.x86_64
--> Processing Dependency: libmagic.so.1()(64bit) for package: rpm-python-4.11.3-25.el7.x86_64
---> Package setup.noarch 0:2.8.71-7.el7 will be installed
--> Processing Dependency: system-release for package: setup-2.8.71-7.el7.noarch
---> Package yum-metadata-parser.x86_64 0:1.1.4-10.el7 will be installed
--> Processing Dependency: glib2 >= 2.15 for package: yum-metadata-parser-1.1.4-10.el7.x86_64
--> Processing Dependency: libsqlite3.so.0()(64bit) for package: yum-metadata-parser-1.1.4-10.el7.x86_64
--> Processing Dependency: libglib-2.0.so.0()(64bit) for package: yum-metadata-parser-1.1.4-10.el7.x86_64
---> Package yum-plugin-fastestmirror.noarch 0:1.1.31-42.el7 will be installed
--> Running transaction check
---> Package basesystem.noarch 0:10.0-7.el7.centos will be installed
--> Processing Dependency: filesystem for package: basesystem-10.0-7.el7.centos.noarch
---> Package bash.x86_64 0:4.2.46-29.el7_4 will be installed
--> Processing Dependency: libtinfo.so.5()(64bit) for package: bash-4.2.46-29.el7_4.x86_64
---> Package bzip2-libs.x86_64 0:1.0.6-13.el7 will be installed
---> Package centos-release.x86_64 0:7-4.1708.el7.centos will be installed
---> Package curl.x86_64 0:7.29.0-42.el7_4.1 will be installed
--> Processing Dependency: libcurl = 7.29.0-42.el7_4.1 for package: curl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libplds4.so()(64bit) for package: curl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libplc4.so()(64bit) for package: curl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libnssutil3.so()(64bit) for package: curl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libnspr4.so()(64bit) for package: curl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libcurl.so.4()(64bit) for package: curl-7.29.0-42.el7_4.1.x86_64
---> Package elfutils-libelf.x86_64 0:0.168-8.el7 will be installed
---> Package file-libs.x86_64 0:5.11-33.el7 will be installed
---> Package glib2.x86_64 0:2.50.3-3.el7 will be installed
--> Processing Dependency: shared-mime-info for package: glib2-2.50.3-3.el7.x86_64
--> Processing Dependency: libmount.so.1(MOUNT_2.20)(64bit) for package: glib2-2.50.3-3.el7.x86_64
--> Processing Dependency: libmount.so.1(MOUNT_2.19)(64bit) for package: glib2-2.50.3-3.el7.x86_64
--> Processing Dependency: libmount.so.1()(64bit) for package: glib2-2.50.3-3.el7.x86_64
--> Processing Dependency: libffi.so.6()(64bit) for package: glib2-2.50.3-3.el7.x86_64
---> Package glibc-common.x86_64 0:2.17-196.el7_4.2 will be installed
--> Processing Dependency: tzdata >= 2003a for package: glibc-common-2.17-196.el7_4.2.x86_64
---> Package gmp.x86_64 1:6.0.0-15.el7 will be installed
--> Processing Dependency: libstdc++.so.6(GLIBCXX_3.4.11)(64bit) for package: 1:gmp-6.0.0-15.el7.x86_64
--> Processing Dependency: libstdc++.so.6(GLIBCXX_3.4)(64bit) for package: 1:gmp-6.0.0-15.el7.x86_64
--> Processing Dependency: libstdc++.so.6(CXXABI_1.3)(64bit) for package: 1:gmp-6.0.0-15.el7.x86_64
--> Processing Dependency: libstdc++.so.6()(64bit) for package: 1:gmp-6.0.0-15.el7.x86_64
---> Package gpgme.x86_64 0:1.3.2-5.el7 will be installed
--> Processing Dependency: libassuan.so.0(LIBASSUAN_1.0)(64bit) for package: gpgme-1.3.2-5.el7.x86_64
--> Processing Dependency: gnupg2 for package: gpgme-1.3.2-5.el7.x86_64
--> Processing Dependency: libgpg-error.so.0()(64bit) for package: gpgme-1.3.2-5.el7.x86_64
--> Processing Dependency: libassuan.so.0()(64bit) for package: gpgme-1.3.2-5.el7.x86_64
---> Package grep.x86_64 0:2.20-3.el7 will be installed
---> Package info.x86_64 0:5.1-4.el7 will be installed
---> Package libcap.x86_64 0:2.22-9.el7 will be installed
---> Package libcap-ng.x86_64 0:0.7.5-4.el7 will be installed
---> Package libdb.x86_64 0:5.3.21-21.el7_4 will be installed
---> Package libdb-utils.x86_64 0:5.3.21-21.el7_4 will be installed
---> Package libgcc.x86_64 0:4.8.5-16.el7_4.2 will be installed
---> Package libsepol.x86_64 0:2.5-6.el7 will be installed
---> Package libxml2.x86_64 0:2.9.1-6.el7_2.3 will be installed
---> Package lua.x86_64 0:5.1.4-15.el7 will be installed
--> Processing Dependency: libreadline.so.6()(64bit) for package: lua-5.1.4-15.el7.x86_64
---> Package ncurses.x86_64 0:5.9-14.20130511.el7_4 will be installed
---> Package nss.x86_64 0:3.28.4-15.el7_4 will be installed
--> Processing Dependency: nss-softokn(x86-64) >= 3.28.3-4 for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: nss-system-init for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: nss-pem(x86-64) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: /usr/sbin/update-alternatives for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: /usr/sbin/update-alternatives for package: nss-3.28.4-15.el7_4.x86_64
---> Package nss-softokn-freebl.x86_64 0:3.28.3-8.el7_4 will be installed
---> Package openssl-libs.x86_64 1:1.0.2k-8.el7 will be installed
--> Processing Dependency: ca-certificates >= 2008-5 for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libkrb5.so.3(krb5_3_MIT)(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libk5crypto.so.3(k5crypto_3_MIT)(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libkrb5.so.3()(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libk5crypto.so.3()(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libgssapi_krb5.so.2()(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libcom_err.so.2()(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
---> Package pcre.x86_64 0:8.32-17.el7 will be installed
---> Package popt.x86_64 0:1.13-16.el7 will be installed
---> Package python-chardet.noarch 0:2.2.1-1.el7_1 will be installed
---> Package python-libs.x86_64 0:2.7.5-58.el7 will be installed
--> Processing Dependency: expat >= 2.1.0 for package: python-libs-2.7.5-58.el7.x86_64
--> Processing Dependency: libgdbm_compat.so.4()(64bit) for package: python-libs-2.7.5-58.el7.x86_64
--> Processing Dependency: libgdbm.so.4()(64bit) for package: python-libs-2.7.5-58.el7.x86_64
--> Processing Dependency: libexpat.so.1()(64bit) for package: python-libs-2.7.5-58.el7.x86_64
---> Package python-pycurl.x86_64 0:7.19.0-19.el7 will be installed
--> Processing Dependency: keyutils-libs for package: python-pycurl-7.19.0-19.el7.x86_64
---> Package rpm-build-libs.x86_64 0:4.11.3-25.el7 will be installed
---> Package rpm-libs.x86_64 0:4.11.3-25.el7 will be installed
---> Package sqlite.x86_64 0:3.7.17-8.el7 will be installed
---> Package ustr.x86_64 0:1.0.4-16.el7 will be installed
---> Package xz-libs.x86_64 0:5.2.2-1.el7 will be installed
---> Package zlib.x86_64 0:1.2.7-17.el7 will be installed
--> Running transaction check
---> Package ca-certificates.noarch 0:2017.2.14-71.el7 will be installed
--> Processing Dependency: p11-kit-trust >= 0.23.5 for package: ca-certificates-2017.2.14-71.el7.noarch
--> Processing Dependency: p11-kit >= 0.23.5 for package: ca-certificates-2017.2.14-71.el7.noarch
---> Package chkconfig.x86_64 0:1.7.4-1.el7 will be installed
---> Package expat.x86_64 0:2.1.0-10.el7_3 will be installed
---> Package filesystem.x86_64 0:3.2-21.el7 will be installed
---> Package gdbm.x86_64 0:1.10-8.el7 will be installed
---> Package gnupg2.x86_64 0:2.0.22-4.el7 will be installed
--> Processing Dependency: pinentry for package: gnupg2-2.0.22-4.el7.x86_64
--> Processing Dependency: libgcrypt.so.11(GCRYPT_1.2)(64bit) for package: gnupg2-2.0.22-4.el7.x86_64
--> Processing Dependency: libpth.so.20()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64
--> Processing Dependency: libldap-2.4.so.2()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64
--> Processing Dependency: libgcrypt.so.11()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64
---> Package keyutils-libs.x86_64 0:1.5.8-3.el7 will be installed
---> Package krb5-libs.x86_64 0:1.15.1-8.el7 will be installed
--> Processing Dependency: sed for package: krb5-libs-1.15.1-8.el7.x86_64
--> Processing Dependency: gawk for package: krb5-libs-1.15.1-8.el7.x86_64
--> Processing Dependency: libverto.so.1()(64bit) for package: krb5-libs-1.15.1-8.el7.x86_64
---> Package libassuan.x86_64 0:2.1.0-3.el7 will be installed
---> Package libcom_err.x86_64 0:1.42.9-10.el7 will be installed
---> Package libcurl.x86_64 0:7.29.0-42.el7_4.1 will be installed
--> Processing Dependency: libssh2(x86-64) >= 1.4.3 for package: libcurl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libidn.so.11(LIBIDN_1.0)(64bit) for package: libcurl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libssh2.so.1()(64bit) for package: libcurl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libidn.so.11()(64bit) for package: libcurl-7.29.0-42.el7_4.1.x86_64
---> Package libffi.x86_64 0:3.0.13-18.el7 will be installed
---> Package libgpg-error.x86_64 0:1.12-3.el7 will be installed
---> Package libmount.x86_64 0:2.23.2-43.el7_4.2 will be installed
--> Processing Dependency: libuuid = 2.23.2-43.el7_4.2 for package: libmount-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid = 2.23.2-43.el7_4.2 for package: libmount-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1(BLKID_2.17)(64bit) for package: libmount-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1(BLKID_2.15)(64bit) for package: libmount-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1(BLKID_1.0)(64bit) for package: libmount-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libuuid.so.1()(64bit) for package: libmount-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1()(64bit) for package: libmount-2.23.2-43.el7_4.2.x86_64
---> Package libstdc++.x86_64 0:4.8.5-16.el7_4.2 will be installed
---> Package ncurses-libs.x86_64 0:5.9-14.20130511.el7_4 will be installed
--> Processing Dependency: ncurses-base = 5.9-14.20130511.el7_4 for package: ncurses-libs-5.9-14.20130511.el7_4.x86_64
---> Package nspr.x86_64 0:4.13.1-1.0.el7_3 will be installed
---> Package nss-pem.x86_64 0:1.0.3-4.el7 will be installed
---> Package nss-softokn.x86_64 0:3.28.3-8.el7_4 will be installed
---> Package nss-sysinit.x86_64 0:3.28.4-15.el7_4 will be installed
---> Package nss-util.x86_64 0:3.28.4-3.el7 will be installed
---> Package readline.x86_64 0:6.2-10.el7 will be installed
---> Package shared-mime-info.x86_64 0:1.8-3.el7 will be installed
---> Package tzdata.noarch 0:2018d-1.el7 will be installed
--> Running transaction check
---> Package gawk.x86_64 0:4.0.2-4.el7_3.1 will be installed
---> Package libblkid.x86_64 0:2.23.2-43.el7_4.2 will be installed
---> Package libgcrypt.x86_64 0:1.5.3-14.el7 will be installed
---> Package libidn.x86_64 0:1.28-4.el7 will be installed
---> Package libssh2.x86_64 0:1.4.3-10.el7_2.1 will be installed
---> Package libuuid.x86_64 0:2.23.2-43.el7_4.2 will be installed
---> Package libverto.x86_64 0:0.2.5-4.el7 will be installed
---> Package ncurses-base.noarch 0:5.9-14.20130511.el7_4 will be installed
---> Package openldap.x86_64 0:2.4.44-5.el7 will be installed
--> Processing Dependency: nss-tools for package: openldap-2.4.44-5.el7.x86_64
--> Processing Dependency: findutils for package: openldap-2.4.44-5.el7.x86_64
--> Processing Dependency: libsasl2.so.3()(64bit) for package: openldap-2.4.44-5.el7.x86_64
---> Package p11-kit.x86_64 0:0.23.5-3.el7 will be installed
---> Package p11-kit-trust.x86_64 0:0.23.5-3.el7 will be installed
--> Processing Dependency: libtasn1.so.6(LIBTASN1_0_3)(64bit) for package: p11-kit-trust-0.23.5-3.el7.x86_64
--> Processing Dependency: libtasn1.so.6()(64bit) for package: p11-kit-trust-0.23.5-3.el7.x86_64
---> Package pinentry.x86_64 0:0.8.1-17.el7 will be installed
---> Package pth.x86_64 0:2.0.7-23.el7 will be installed
---> Package sed.x86_64 0:4.2.2-5.el7 will be installed
--> Running transaction check
---> Package cyrus-sasl-lib.x86_64 0:2.1.26-21.el7 will be installed
---> Package findutils.x86_64 1:4.5.11-5.el7 will be installed
---> Package libtasn1.x86_64 0:4.10-1.el7 will be installed
---> Package nss-tools.x86_64 0:3.28.4-15.el7_4 will be installed
--> Finished Dependency Resolution

Dependencies Resolved

================================================================================
 Package                    Arch     Version                    Repository
                                                                           Size
================================================================================
Installing:
 distribution-gpg-keys      noarch   1.19-1.el7                 epel      167 k
 shadow-utils               x86_64   2:4.1.5.1-24.el7           base      1.1 M
 yum                        noarch   3.4.3-154.el7.centos.1     updates   1.2 M
 yum-utils                  noarch   1.1.31-42.el7              base      117 k
Installing for dependencies:
 audit-libs                 x86_64   2.7.6-3.el7                base       96 k
 basesystem                 noarch   10.0-7.el7.centos          base      5.0 k
 bash                       x86_64   4.2.46-29.el7_4            updates   1.0 M
 bzip2-libs                 x86_64   1.0.6-13.el7               base       40 k
 ca-certificates            noarch   2017.2.14-71.el7           base      472 k
 centos-release             x86_64   7-4.1708.el7.centos        base       23 k
 chkconfig                  x86_64   1.7.4-1.el7                base      181 k
 coreutils                  x86_64   8.22-18.el7                base      3.3 M
 cpio                       x86_64   2.11-25.el7_4              updates   210 k
 curl                       x86_64   7.29.0-42.el7_4.1          updates   267 k
 cyrus-sasl-lib             x86_64   2.1.26-21.el7              base      155 k
 diffutils                  x86_64   3.3-4.el7                  base      322 k
 elfutils-libelf            x86_64   0.168-8.el7                base      191 k
 expat                      x86_64   2.1.0-10.el7_3             base       81 k
 file-libs                  x86_64   5.11-33.el7                base      340 k
 filesystem                 x86_64   3.2-21.el7                 base      1.0 M
 findutils                  x86_64   1:4.5.11-5.el7             base      559 k
 gawk                       x86_64   4.0.2-4.el7_3.1            base      874 k
 gdbm                       x86_64   1.10-8.el7                 base       70 k
 glib2                      x86_64   2.50.3-3.el7               base      2.3 M
 glibc                      x86_64   2.17-196.el7_4.2           updates   3.6 M
 glibc-common               x86_64   2.17-196.el7_4.2           updates    11 M
 gmp                        x86_64   1:6.0.0-15.el7             base      281 k
 gnupg2                     x86_64   2.0.22-4.el7               base      1.5 M
 gpgme                      x86_64   1.3.2-5.el7                base      146 k
 grep                       x86_64   2.20-3.el7                 base      344 k
 info                       x86_64   5.1-4.el7                  base      233 k
 keyutils-libs              x86_64   1.5.8-3.el7                base       25 k
 krb5-libs                  x86_64   1.15.1-8.el7               base      747 k
 libacl                     x86_64   2.2.51-12.el7              base       27 k
 libassuan                  x86_64   2.1.0-3.el7                base       63 k
 libattr                    x86_64   2.4.46-12.el7              base       18 k
 libblkid                   x86_64   2.23.2-43.el7_4.2          updates   176 k
 libcap                     x86_64   2.22-9.el7                 base       47 k
 libcap-ng                  x86_64   0.7.5-4.el7                base       25 k
 libcom_err                 x86_64   1.42.9-10.el7              base       40 k
 libcurl                    x86_64   7.29.0-42.el7_4.1          updates   219 k
 libdb                      x86_64   5.3.21-21.el7_4            updates   719 k
 libdb-utils                x86_64   5.3.21-21.el7_4            updates   132 k
 libffi                     x86_64   3.0.13-18.el7              base       30 k
 libgcc                     x86_64   4.8.5-16.el7_4.2           updates    98 k
 libgcrypt                  x86_64   1.5.3-14.el7               base      263 k
 libgpg-error               x86_64   1.12-3.el7                 base       87 k
 libidn                     x86_64   1.28-4.el7                 base      209 k
 libmount                   x86_64   2.23.2-43.el7_4.2          updates   178 k
 libselinux                 x86_64   2.5-11.el7                 base      162 k
 libsemanage                x86_64   2.5-8.el7                  base      145 k
 libsepol                   x86_64   2.5-6.el7                  base      288 k
 libssh2                    x86_64   1.4.3-10.el7_2.1           base      134 k
 libstdc++                  x86_64   4.8.5-16.el7_4.2           updates   301 k
 libtasn1                   x86_64   4.10-1.el7                 base      320 k
 libuuid                    x86_64   2.23.2-43.el7_4.2          updates    79 k
 libverto                   x86_64   0.2.5-4.el7                base       16 k
 libxml2                    x86_64   2.9.1-6.el7_2.3            base      668 k
 libxml2-python             x86_64   2.9.1-6.el7_2.3            base      247 k
 lua                        x86_64   5.1.4-15.el7               base      201 k
 ncurses                    x86_64   5.9-14.20130511.el7_4      updates   304 k
 ncurses-base               noarch   5.9-14.20130511.el7_4      updates    68 k
 ncurses-libs               x86_64   5.9-14.20130511.el7_4      updates   316 k
 nspr                       x86_64   4.13.1-1.0.el7_3           base      126 k
 nss                        x86_64   3.28.4-15.el7_4            updates   849 k
 nss-pem                    x86_64   1.0.3-4.el7                base       73 k
 nss-softokn                x86_64   3.28.3-8.el7_4             updates   310 k
 nss-softokn-freebl         x86_64   3.28.3-8.el7_4             updates   214 k
 nss-sysinit                x86_64   3.28.4-15.el7_4            updates    60 k
 nss-tools                  x86_64   3.28.4-15.el7_4            updates   501 k
 nss-util                   x86_64   3.28.4-3.el7               base       73 k
 openldap                   x86_64   2.4.44-5.el7               base      354 k
 openssl-libs               x86_64   1:1.0.2k-8.el7             base      1.2 M
 p11-kit                    x86_64   0.23.5-3.el7               base      252 k
 p11-kit-trust              x86_64   0.23.5-3.el7               base      129 k
 pcre                       x86_64   8.32-17.el7                base      422 k
 pinentry                   x86_64   0.8.1-17.el7               base       73 k
 popt                       x86_64   1.13-16.el7                base       42 k
 pth                        x86_64   2.0.7-23.el7               base       89 k
 pygpgme                    x86_64   0.3-9.el7                  base       63 k
 pyliblzma                  x86_64   0.5.3-11.el7               base       47 k
 python                     x86_64   2.7.5-58.el7               base       91 k
 python-chardet             noarch   2.2.1-1.el7_1              base      227 k
 python-iniparse            noarch   0.4-9.el7                  base       39 k
 python-kitchen             noarch   1.1.1-5.el7                base      267 k
 python-libs                x86_64   2.7.5-58.el7               base      5.6 M
 python-pycurl              x86_64   7.19.0-19.el7              base       80 k
 python-urlgrabber          noarch   3.10-8.el7                 base      108 k
 pyxattr                    x86_64   0.5.1-5.el7                base       28 k
 readline                   x86_64   6.2-10.el7                 base      193 k
 rpm                        x86_64   4.11.3-25.el7              base      1.2 M
 rpm-build-libs             x86_64   4.11.3-25.el7              base      104 k
 rpm-libs                   x86_64   4.11.3-25.el7              base      275 k
 rpm-python                 x86_64   4.11.3-25.el7              base       81 k
 sed                        x86_64   4.2.2-5.el7                base      231 k
 setup                      noarch   2.8.71-7.el7               base      165 k
 shared-mime-info           x86_64   1.8-3.el7                  base      312 k
 sqlite                     x86_64   3.7.17-8.el7               base      393 k
 tzdata                     noarch   2018d-1.el7                updates   481 k
 ustr                       x86_64   1.0.4-16.el7               base       92 k
 xz-libs                    x86_64   5.2.2-1.el7                base      103 k
 yum-metadata-parser        x86_64   1.1.4-10.el7               base       28 k
 yum-plugin-fastestmirror   noarch   1.1.31-42.el7              base       32 k
 zlib                       x86_64   1.2.7-17.el7               base       90 k

Transaction Summary
================================================================================
Install  4 Packages (+100 Dependent packages)

Total download size: 53 M
Installed size: 256 M
Downloading packages:
warning: /var/lib/mock/736198-epel-7-x86_64-bootstrap-1522751158.115147/root/var/cache/yum/base/packages/basesystem-10.0-7.el7.centos.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID f4a80eb5: NOKEY
Public key for basesystem-10.0-7.el7.centos.noarch.rpm is not installed
(1/104): basesystem-10.0-7.el7.centos.noarch.rpm            | 5.0 kB  00:00     
(2/104): audit-libs-2.7.6-3.el7.x86_64.rpm                  |  96 kB  00:00     
(3/104): bzip2-libs-1.0.6-13.el7.x86_64.rpm                 |  40 kB  00:00     
Public key for bash-4.2.46-29.el7_4.x86_64.rpm is not installed
(4/104): bash-4.2.46-29.el7_4.x86_64.rpm                    | 1.0 MB  00:00     
(5/104): centos-release-7-4.1708.el7.centos.x86_64.rpm      |  23 kB  00:00     
(6/104): ca-certificates-2017.2.14-71.el7.noarch.rpm        | 472 kB  00:00     
(7/104): chkconfig-1.7.4-1.el7.x86_64.rpm                   | 181 kB  00:00     
(8/104): cpio-2.11-25.el7_4.x86_64.rpm                      | 210 kB  00:00     
(9/104): cyrus-sasl-lib-2.1.26-21.el7.x86_64.rpm            | 155 kB  00:00     
(10/104): diffutils-3.3-4.el7.x86_64.rpm                    | 322 kB  00:00     
(11/104): elfutils-libelf-0.168-8.el7.x86_64.rpm            | 191 kB  00:00     
(12/104): coreutils-8.22-18.el7.x86_64.rpm                  | 3.3 MB  00:00     
warning: /var/lib/mock/736198-epel-7-x86_64-bootstrap-1522751158.115147/root/var/cache/yum/epel/packages/distribution-gpg-keys-1.19-1.el7.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID 352c64e5: NOKEY
Public key for distribution-gpg-keys-1.19-1.el7.noarch.rpm is not installed
(13/104): distribution-gpg-keys-1.19-1.el7.noarch.rpm       | 167 kB  00:00     
(14/104): curl-7.29.0-42.el7_4.1.x86_64.rpm                 | 267 kB  00:00     
(15/104): expat-2.1.0-10.el7_3.x86_64.rpm                   |  81 kB  00:00     
(16/104): file-libs-5.11-33.el7.x86_64.rpm                  | 340 kB  00:00     
(17/104): findutils-4.5.11-5.el7.x86_64.rpm                 | 559 kB  00:00     
(18/104): filesystem-3.2-21.el7.x86_64.rpm                  | 1.0 MB  00:00     
(19/104): gdbm-1.10-8.el7.x86_64.rpm                        |  70 kB  00:00     
(20/104): gawk-4.0.2-4.el7_3.1.x86_64.rpm                   | 874 kB  00:00     
(21/104): gmp-6.0.0-15.el7.x86_64.rpm                       | 281 kB  00:00     
(22/104): gnupg2-2.0.22-4.el7.x86_64.rpm                    | 1.5 MB  00:00     
(23/104): glib2-2.50.3-3.el7.x86_64.rpm                     | 2.3 MB  00:00     
(24/104): gpgme-1.3.2-5.el7.x86_64.rpm                      | 146 kB  00:00     
(25/104): grep-2.20-3.el7.x86_64.rpm                        | 344 kB  00:00     
(26/104): glibc-2.17-196.el7_4.2.x86_64.rpm                 | 3.6 MB  00:00     
(27/104): info-5.1-4.el7.x86_64.rpm                         | 233 kB  00:00     
(28/104): keyutils-libs-1.5.8-3.el7.x86_64.rpm              |  25 kB  00:00     
(29/104): krb5-libs-1.15.1-8.el7.x86_64.rpm                 | 747 kB  00:00     
(30/104): libacl-2.2.51-12.el7.x86_64.rpm                   |  27 kB  00:00     
(31/104): libassuan-2.1.0-3.el7.x86_64.rpm                  |  63 kB  00:00     
(32/104): libblkid-2.23.2-43.el7_4.2.x86_64.rpm             | 176 kB  00:00     
(33/104): libattr-2.4.46-12.el7.x86_64.rpm                  |  18 kB  00:00     
(34/104): libcap-2.22-9.el7.x86_64.rpm                      |  47 kB  00:00     
(35/104): libcap-ng-0.7.5-4.el7.x86_64.rpm                  |  25 kB  00:00     
(36/104): libcurl-7.29.0-42.el7_4.1.x86_64.rpm              | 219 kB  00:00     
(37/104): libcom_err-1.42.9-10.el7.x86_64.rpm               |  40 kB  00:00     
(38/104): libdb-5.3.21-21.el7_4.x86_64.rpm                  | 719 kB  00:00     
(39/104): libdb-utils-5.3.21-21.el7_4.x86_64.rpm            | 132 kB  00:00     
(40/104): libffi-3.0.13-18.el7.x86_64.rpm                   |  30 kB  00:00     
(41/104): libgcc-4.8.5-16.el7_4.2.x86_64.rpm                |  98 kB  00:00     
(42/104): libgpg-error-1.12-3.el7.x86_64.rpm                |  87 kB  00:00     
(43/104): libmount-2.23.2-43.el7_4.2.x86_64.rpm             | 178 kB  00:00     
(44/104): libidn-1.28-4.el7.x86_64.rpm                      | 209 kB  00:00     
(45/104): libselinux-2.5-11.el7.x86_64.rpm                  | 162 kB  00:00     
(46/104): libsemanage-2.5-8.el7.x86_64.rpm                  | 145 kB  00:00     
(47/104): libsepol-2.5-6.el7.x86_64.rpm                     | 288 kB  00:00     
(48/104): glibc-common-2.17-196.el7_4.2.x86_64.rpm          |  11 MB  00:01     
(49/104): libstdc++-4.8.5-16.el7_4.2.x86_64.rpm             | 301 kB  00:00     
(50/104): libssh2-1.4.3-10.el7_2.1.x86_64.rpm               | 134 kB  00:00     
(51/104): libgcrypt-1.5.3-14.el7.x86_64.rpm                 | 263 kB  00:00     
(52/104): libuuid-2.23.2-43.el7_4.2.x86_64.rpm              |  79 kB  00:00     
(53/104): libtasn1-4.10-1.el7.x86_64.rpm                    | 320 kB  00:00     
(54/104): libverto-0.2.5-4.el7.x86_64.rpm                   |  16 kB  00:00     
(55/104): libxml2-2.9.1-6.el7_2.3.x86_64.rpm                | 668 kB  00:00     
(56/104): ncurses-5.9-14.20130511.el7_4.x86_64.rpm          | 304 kB  00:00     
(57/104): lua-5.1.4-15.el7.x86_64.rpm                       | 201 kB  00:00     
(58/104): libxml2-python-2.9.1-6.el7_2.3.x86_64.rpm         | 247 kB  00:00     
(59/104): ncurses-libs-5.9-14.20130511.el7_4.x86_64.rpm     | 316 kB  00:00     
(60/104): nspr-4.13.1-1.0.el7_3.x86_64.rpm                  | 126 kB  00:00     
(61/104): nss-pem-1.0.3-4.el7.x86_64.rpm                    |  73 kB  00:00     
(62/104): nss-3.28.4-15.el7_4.x86_64.rpm                    | 849 kB  00:00     
(63/104): nss-softokn-3.28.3-8.el7_4.x86_64.rpm             | 310 kB  00:00     
(64/104): ncurses-base-5.9-14.20130511.el7_4.noarch.rpm     |  68 kB  00:00     
(65/104): nss-softokn-freebl-3.28.3-8.el7_4.x86_64.rpm      | 214 kB  00:00     
(66/104): nss-sysinit-3.28.4-15.el7_4.x86_64.rpm            |  60 kB  00:00     
(67/104): nss-tools-3.28.4-15.el7_4.x86_64.rpm              | 501 kB  00:00     
(68/104): nss-util-3.28.4-3.el7.x86_64.rpm                  |  73 kB  00:00     
(69/104): openssl-libs-1.0.2k-8.el7.x86_64.rpm              | 1.2 MB  00:00     
(70/104): p11-kit-0.23.5-3.el7.x86_64.rpm                   | 252 kB  00:00     
(71/104): p11-kit-trust-0.23.5-3.el7.x86_64.rpm             | 129 kB  00:00     
(72/104): pcre-8.32-17.el7.x86_64.rpm                       | 422 kB  00:00     
(73/104): openldap-2.4.44-5.el7.x86_64.rpm                  | 354 kB  00:00     
(74/104): pinentry-0.8.1-17.el7.x86_64.rpm                  |  73 kB  00:00     
(75/104): popt-1.13-16.el7.x86_64.rpm                       |  42 kB  00:00     
(76/104): pth-2.0.7-23.el7.x86_64.rpm                       |  89 kB  00:00     
(77/104): pygpgme-0.3-9.el7.x86_64.rpm                      |  63 kB  00:00     
(78/104): pyliblzma-0.5.3-11.el7.x86_64.rpm                 |  47 kB  00:00     
(79/104): python-2.7.5-58.el7.x86_64.rpm                    |  91 kB  00:00     
(80/104): python-chardet-2.2.1-1.el7_1.noarch.rpm           | 227 kB  00:00     
(81/104): python-iniparse-0.4-9.el7.noarch.rpm              |  39 kB  00:00     
(82/104): python-kitchen-1.1.1-5.el7.noarch.rpm             | 267 kB  00:00     
(83/104): python-pycurl-7.19.0-19.el7.x86_64.rpm            |  80 kB  00:00     
(84/104): python-urlgrabber-3.10-8.el7.noarch.rpm           | 108 kB  00:00     
(85/104): pyxattr-0.5.1-5.el7.x86_64.rpm                    |  28 kB  00:00     
(86/104): readline-6.2-10.el7.x86_64.rpm                    | 193 kB  00:00     
(87/104): rpm-4.11.3-25.el7.x86_64.rpm                      | 1.2 MB  00:00     
(88/104): rpm-build-libs-4.11.3-25.el7.x86_64.rpm           | 104 kB  00:00     
(89/104): python-libs-2.7.5-58.el7.x86_64.rpm               | 5.6 MB  00:00     
(90/104): rpm-libs-4.11.3-25.el7.x86_64.rpm                 | 275 kB  00:00     
(91/104): rpm-python-4.11.3-25.el7.x86_64.rpm               |  81 kB  00:00     
(92/104): sed-4.2.2-5.el7.x86_64.rpm                        | 231 kB  00:00     
(93/104): setup-2.8.71-7.el7.noarch.rpm                     | 165 kB  00:00     
(94/104): shared-mime-info-1.8-3.el7.x86_64.rpm             | 312 kB  00:00     
(95/104): shadow-utils-4.1.5.1-24.el7.x86_64.rpm            | 1.1 MB  00:00     
(96/104): sqlite-3.7.17-8.el7.x86_64.rpm                    | 393 kB  00:00     
(97/104): ustr-1.0.4-16.el7.x86_64.rpm                      |  92 kB  00:00     
(98/104): xz-libs-5.2.2-1.el7.x86_64.rpm                    | 103 kB  00:00     
(99/104): yum-metadata-parser-1.1.4-10.el7.x86_64.rpm       |  28 kB  00:00     
(100/104): yum-plugin-fastestmirror-1.1.31-42.el7.noarch.rp |  32 kB  00:00     
(101/104): yum-utils-1.1.31-42.el7.noarch.rpm               | 117 kB  00:00     
(102/104): tzdata-2018d-1.el7.noarch.rpm                    | 481 kB  00:00     
(103/104): zlib-1.2.7-17.el7.x86_64.rpm                     |  90 kB  00:00     
(104/104): yum-3.4.3-154.el7.centos.1.noarch.rpm            | 1.2 MB  00:00     
--------------------------------------------------------------------------------
Total                                               11 MB/s |  53 MB  00:04     
Retrieving key from file:///usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7
Importing GPG key 0xF4A80EB5:
 Userid     : "CentOS-7 Key (CentOS 7 Official Signing Key) <security@centos.org>"
 Fingerprint: 6341 ab27 53d7 8a78 a7c2 7bb1 24c6 a8a7 f4a8 0eb5
 From       : /usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7
Retrieving key from file:///usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7
Importing GPG key 0x352C64E5:
 Userid     : "Fedora EPEL (7) <epel@fedoraproject.org>"
 Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5
 From       : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7
Running transaction check
Running transaction test
Transaction test succeeded
Running transaction
  Installing : libgcc-4.8.5-16.el7_4.2.x86_64                             1/104 
  Installing : ncurses-base-5.9-14.20130511.el7_4.noarch                  2/104 
  Installing : tzdata-2018d-1.el7.noarch                                  3/104 
  Installing : centos-release-7-4.1708.el7.centos.x86_64                  4/104 
  Installing : setup-2.8.71-7.el7.noarch                                  5/104 
warning: /etc/hosts created as /etc/hosts.rpmnew
  Installing : filesystem-3.2-21.el7.x86_64                               6/104 
  Installing : basesystem-10.0-7.el7.centos.noarch                        7/104 
  Installing : nss-softokn-freebl-3.28.3-8.el7_4.x86_64                   8/104 
  Installing : glibc-common-2.17-196.el7_4.2.x86_64                       9/104 
  Installing : glibc-2.17-196.el7_4.2.x86_64                             10/104 
  Installing : nspr-4.13.1-1.0.el7_3.x86_64                              11/104 
  Installing : libstdc++-4.8.5-16.el7_4.2.x86_64                         12/104 
  Installing : ncurses-libs-5.9-14.20130511.el7_4.x86_64                 13/104 
  Installing : bash-4.2.46-29.el7_4.x86_64                               14/104 
  Installing : libsepol-2.5-6.el7.x86_64                                 15/104 
  Installing : pcre-8.32-17.el7.x86_64                                   16/104 
  Installing : libselinux-2.5-11.el7.x86_64                              17/104 
  Installing : zlib-1.2.7-17.el7.x86_64                                  18/104 
  Installing : info-5.1-4.el7.x86_64                                     19/104 
  Installing : nss-util-3.28.4-3.el7.x86_64                              20/104 
  Installing : bzip2-libs-1.0.6-13.el7.x86_64                            21/104 
  Installing : xz-libs-5.2.2-1.el7.x86_64                                22/104 
  Installing : libdb-5.3.21-21.el7_4.x86_64                              23/104 
  Installing : popt-1.13-16.el7.x86_64                                   24/104 
  Installing : libattr-2.4.46-12.el7.x86_64                              25/104 
  Installing : libacl-2.2.51-12.el7.x86_64                               26/104 
  Installing : libcap-2.22-9.el7.x86_64                                  27/104 
  Installing : readline-6.2-10.el7.x86_64                                28/104 
  Installing : lua-5.1.4-15.el7.x86_64                                   29/104 
  Installing : elfutils-libelf-0.168-8.el7.x86_64                        30/104 
  Installing : libffi-3.0.13-18.el7.x86_64                               31/104 
  Installing : libgpg-error-1.12-3.el7.x86_64                            32/104 
  Installing : sqlite-3.7.17-8.el7.x86_64                                33/104 
  Installing : chkconfig-1.7.4-1.el7.x86_64                              34/104 
  Installing : libxml2-2.9.1-6.el7_2.3.x86_64                            35/104 
  Installing : libcom_err-1.42.9-10.el7.x86_64                           36/104 
  Installing : nss-softokn-3.28.3-8.el7_4.x86_64                         37/104 
  Installing : libassuan-2.1.0-3.el7.x86_64                              38/104 
  Installing : p11-kit-0.23.5-3.el7.x86_64                               39/104 
  Installing : grep-2.20-3.el7.x86_64                                    40/104 
  Installing : sed-4.2.2-5.el7.x86_64                                    41/104 
  Installing : file-libs-5.11-33.el7.x86_64                              42/104 
  Installing : keyutils-libs-1.5.8-3.el7.x86_64                          43/104 
  Installing : libuuid-2.23.2-43.el7_4.2.x86_64                          44/104 
  Installing : pinentry-0.8.1-17.el7.x86_64                              45/104 
  Installing : libgcrypt-1.5.3-14.el7.x86_64                             46/104 
  Installing : cyrus-sasl-lib-2.1.26-21.el7.x86_64                       47/104 
  Installing : libdb-utils-5.3.21-21.el7_4.x86_64                        48/104 
  Installing : libidn-1.28-4.el7.x86_64                                  49/104 
  Installing : gawk-4.0.2-4.el7_3.1.x86_64                               50/104 
  Installing : 1:findutils-4.5.11-5.el7.x86_64                           51/104 
  Installing : diffutils-3.3-4.el7.x86_64                                52/104 
  Installing : cpio-2.11-25.el7_4.x86_64                                 53/104 
  Installing : ncurses-5.9-14.20130511.el7_4.x86_64                      54/104 
  Installing : 1:gmp-6.0.0-15.el7.x86_64                                 55/104 
  Installing : pth-2.0.7-23.el7.x86_64                                   56/104 
  Installing : libverto-0.2.5-4.el7.x86_64                               57/104 
  Installing : ustr-1.0.4-16.el7.x86_64                                  58/104 
  Installing : libtasn1-4.10-1.el7.x86_64                                59/104 
  Installing : p11-kit-trust-0.23.5-3.el7.x86_64                         60/104 
  Installing : ca-certificates-2017.2.14-71.el7.noarch                   61/104 
  Installing : krb5-libs-1.15.1-8.el7.x86_64                             62/104 
  Installing : 1:openssl-libs-1.0.2k-8.el7.x86_64                        63/104 
  Installing : coreutils-8.22-18.el7.x86_64                              64/104 
  Installing : nss-pem-1.0.3-4.el7.x86_64                                65/104 
  Installing : nss-3.28.4-15.el7_4.x86_64                                66/104 
  Installing : nss-sysinit-3.28.4-15.el7_4.x86_64                        67/104 
  Installing : nss-tools-3.28.4-15.el7_4.x86_64                          68/104 
  Installing : libblkid-2.23.2-43.el7_4.2.x86_64                         69/104 
  Installing : libmount-2.23.2-43.el7_4.2.x86_64                         70/104 
  Installing : glib2-2.50.3-3.el7.x86_64                                 71/104 
  Installing : shared-mime-info-1.8-3.el7.x86_64                         72/104 
  Installing : libssh2-1.4.3-10.el7_2.1.x86_64                           73/104 
  Installing : libcurl-7.29.0-42.el7_4.1.x86_64                          74/104 
  Installing : curl-7.29.0-42.el7_4.1.x86_64                             75/104 
  Installing : rpm-libs-4.11.3-25.el7.x86_64                             76/104 
  Installing : rpm-4.11.3-25.el7.x86_64                                  77/104 
  Installing : openldap-2.4.44-5.el7.x86_64                              78/104 
  Installing : gnupg2-2.0.22-4.el7.x86_64                                79/104 
  Installing : gpgme-1.3.2-5.el7.x86_64                                  80/104 
  Installing : rpm-build-libs-4.11.3-25.el7.x86_64                       81/104 
  Installing : gdbm-1.10-8.el7.x86_64                                    82/104 
  Installing : expat-2.1.0-10.el7_3.x86_64                               83/104 
  Installing : python-libs-2.7.5-58.el7.x86_64                           84/104 
  Installing : python-2.7.5-58.el7.x86_64                                85/104 
  Installing : pygpgme-0.3-9.el7.x86_64                                  86/104 
  Installing : python-iniparse-0.4-9.el7.noarch                          87/104 
  Installing : libxml2-python-2.9.1-6.el7_2.3.x86_64                     88/104 
  Installing : rpm-python-4.11.3-25.el7.x86_64                           89/104 
  Installing : yum-metadata-parser-1.1.4-10.el7.x86_64                   90/104 
  Installing : python-pycurl-7.19.0-19.el7.x86_64                        91/104 
  Installing : python-urlgrabber-3.10-8.el7.noarch                       92/104 
  Installing : pyliblzma-0.5.3-11.el7.x86_64                             93/104 
  Installing : pyxattr-0.5.1-5.el7.x86_64                                94/104 
  Installing : yum-plugin-fastestmirror-1.1.31-42.el7.noarch             95/104 
  Installing : yum-3.4.3-154.el7.centos.1.noarch                         96/104 
warning: /etc/yum.conf created as /etc/yum.conf.rpmnew
  Installing : python-chardet-2.2.1-1.el7_1.noarch                       97/104 
  Installing : python-kitchen-1.1.1-5.el7.noarch                         98/104 
  Installing : libcap-ng-0.7.5-4.el7.x86_64                              99/104 
  Installing : audit-libs-2.7.6-3.el7.x86_64                            100/104 
  Installing : libsemanage-2.5-8.el7.x86_64                             101/104 
  Installing : 2:shadow-utils-4.1.5.1-24.el7.x86_64                     102/104 
  Installing : yum-utils-1.1.31-42.el7.noarch                           103/104 
  Installing : distribution-gpg-keys-1.19-1.el7.noarch                  104/104 
  Verifying  : pygpgme-0.3-9.el7.x86_64                                   1/104 
  Verifying  : rpm-4.11.3-25.el7.x86_64                                   2/104 
  Verifying  : pcre-8.32-17.el7.x86_64                                    3/104 
  Verifying  : pth-2.0.7-23.el7.x86_64                                    4/104 
  Verifying  : nss-util-3.28.4-3.el7.x86_64                               5/104 
  Verifying  : libssh2-1.4.3-10.el7_2.1.x86_64                            6/104 
  Verifying  : file-libs-5.11-33.el7.x86_64                               7/104 
  Verifying  : nss-sysinit-3.28.4-15.el7_4.x86_64                         8/104 
  Verifying  : libstdc++-4.8.5-16.el7_4.2.x86_64                          9/104 
  Verifying  : ca-certificates-2017.2.14-71.el7.noarch                   10/104 
  Verifying  : libcom_err-1.42.9-10.el7.x86_64                           11/104 
  Verifying  : centos-release-7-4.1708.el7.centos.x86_64                 12/104 
  Verifying  : tzdata-2018d-1.el7.noarch                                 13/104 
  Verifying  : cyrus-sasl-lib-2.1.26-21.el7.x86_64                       14/104 
  Verifying  : libacl-2.2.51-12.el7.x86_64                               15/104 
  Verifying  : libffi-3.0.13-18.el7.x86_64                               16/104 
  Verifying  : krb5-libs-1.15.1-8.el7.x86_64                             17/104 
  Verifying  : libassuan-2.1.0-3.el7.x86_64                              18/104 
  Verifying  : readline-6.2-10.el7.x86_64                                19/104 
  Verifying  : chkconfig-1.7.4-1.el7.x86_64                              20/104 
  Verifying  : elfutils-libelf-0.168-8.el7.x86_64                        21/104 
  Verifying  : lua-5.1.4-15.el7.x86_64                                   22/104 
  Verifying  : sqlite-3.7.17-8.el7.x86_64                                23/104 
  Verifying  : gnupg2-2.0.22-4.el7.x86_64                                24/104 
  Verifying  : libmount-2.23.2-43.el7_4.2.x86_64                         25/104 
  Verifying  : libidn-1.28-4.el7.x86_64                                  26/104 
  Verifying  : ncurses-libs-5.9-14.20130511.el7_4.x86_64                 27/104 
  Verifying  : python-iniparse-0.4-9.el7.noarch                          28/104 
  Verifying  : basesystem-10.0-7.el7.centos.noarch                       29/104 
  Verifying  : libverto-0.2.5-4.el7.x86_64                               30/104 
  Verifying  : glibc-2.17-196.el7_4.2.x86_64                             31/104 
  Verifying  : curl-7.29.0-42.el7_4.1.x86_64                             32/104 
  Verifying  : libxml2-python-2.9.1-6.el7_2.3.x86_64                     33/104 
  Verifying  : bzip2-libs-1.0.6-13.el7.x86_64                            34/104 
  Verifying  : ustr-1.0.4-16.el7.x86_64                                  35/104 
  Verifying  : 2:shadow-utils-4.1.5.1-24.el7.x86_64                      36/104 
  Verifying  : rpm-python-4.11.3-25.el7.x86_64                           37/104 
  Verifying  : yum-plugin-fastestmirror-1.1.31-42.el7.noarch             38/104 
  Verifying  : libtasn1-4.10-1.el7.x86_64                                39/104 
  Verifying  : libgpg-error-1.12-3.el7.x86_64                            40/104 
  Verifying  : python-kitchen-1.1.1-5.el7.noarch                         41/104 
  Verifying  : filesystem-3.2-21.el7.x86_64                              42/104 
  Verifying  : nspr-4.13.1-1.0.el7_3.x86_64                              43/104 
  Verifying  : popt-1.13-16.el7.x86_64                                   44/104 
  Verifying  : nss-pem-1.0.3-4.el7.x86_64                                45/104 
  Verifying  : libsepol-2.5-6.el7.x86_64                                 46/104 
  Verifying  : p11-kit-0.23.5-3.el7.x86_64                               47/104 
  Verifying  : libgcc-4.8.5-16.el7_4.2.x86_64                            48/104 
  Verifying  : python-libs-2.7.5-58.el7.x86_64                           49/104 
  Verifying  : coreutils-8.22-18.el7.x86_64                              50/104 
  Verifying  : libdb-utils-5.3.21-21.el7_4.x86_64                        51/104 
  Verifying  : python-urlgrabber-3.10-8.el7.noarch                       52/104 
  Verifying  : gawk-4.0.2-4.el7_3.1.x86_64                               53/104 
  Verifying  : audit-libs-2.7.6-3.el7.x86_64                             54/104 
  Verifying  : libcurl-7.29.0-42.el7_4.1.x86_64                          55/104 
  Verifying  : libxml2-2.9.1-6.el7_2.3.x86_64                            56/104 
  Verifying  : 1:openssl-libs-1.0.2k-8.el7.x86_64                        57/104 
  Verifying  : distribution-gpg-keys-1.19-1.el7.noarch                   58/104 
  Verifying  : grep-2.20-3.el7.x86_64                                    59/104 
  Verifying  : yum-metadata-parser-1.1.4-10.el7.x86_64                   60/104 
  Verifying  : pinentry-0.8.1-17.el7.x86_64                              61/104 
  Verifying  : gdbm-1.10-8.el7.x86_64                                    62/104 
  Verifying  : openldap-2.4.44-5.el7.x86_64                              63/104 
  Verifying  : python-pycurl-7.19.0-19.el7.x86_64                        64/104 
  Verifying  : xz-libs-5.2.2-1.el7.x86_64                                65/104 
  Verifying  : yum-utils-1.1.31-42.el7.noarch                            66/104 
  Verifying  : python-2.7.5-58.el7.x86_64                                67/104 
  Verifying  : rpm-libs-4.11.3-25.el7.x86_64                             68/104 
  Verifying  : libdb-5.3.21-21.el7_4.x86_64                              69/104 
  Verifying  : glib2-2.50.3-3.el7.x86_64                                 70/104 
  Verifying  : ncurses-5.9-14.20130511.el7_4.x86_64                      71/104 
  Verifying  : ncurses-base-5.9-14.20130511.el7_4.noarch                 72/104 
  Verifying  : nss-tools-3.28.4-15.el7_4.x86_64                          73/104 
  Verifying  : expat-2.1.0-10.el7_3.x86_64                               74/104 
  Verifying  : gpgme-1.3.2-5.el7.x86_64                                  75/104 
  Verifying  : libselinux-2.5-11.el7.x86_64                              76/104 
  Verifying  : shared-mime-info-1.8-3.el7.x86_64                         77/104 
  Verifying  : keyutils-libs-1.5.8-3.el7.x86_64                          78/104 
  Verifying  : libblkid-2.23.2-43.el7_4.2.x86_64                         79/104 
  Verifying  : pyliblzma-0.5.3-11.el7.x86_64                             80/104 
  Verifying  : setup-2.8.71-7.el7.noarch                                 81/104 
  Verifying  : nss-softokn-3.28.3-8.el7_4.x86_64                         82/104 
  Verifying  : libattr-2.4.46-12.el7.x86_64                              83/104 
  Verifying  : zlib-1.2.7-17.el7.x86_64                                  84/104 
  Verifying  : libcap-2.22-9.el7.x86_64                                  85/104 
  Verifying  : libcap-ng-0.7.5-4.el7.x86_64                              86/104 
  Verifying  : 1:gmp-6.0.0-15.el7.x86_64                                 87/104 
  Verifying  : p11-kit-trust-0.23.5-3.el7.x86_64                         88/104 
  Verifying  : libsemanage-2.5-8.el7.x86_64                              89/104 
  Verifying  : libgcrypt-1.5.3-14.el7.x86_64                             90/104 
  Verifying  : pyxattr-0.5.1-5.el7.x86_64                                91/104 
  Verifying  : bash-4.2.46-29.el7_4.x86_64                               92/104 
  Verifying  : sed-4.2.2-5.el7.x86_64                                    93/104 
  Verifying  : rpm-build-libs-4.11.3-25.el7.x86_64                       94/104 
  Verifying  : 1:findutils-4.5.11-5.el7.x86_64                           95/104 
  Verifying  : libuuid-2.23.2-43.el7_4.2.x86_64                          96/104 
  Verifying  : python-chardet-2.2.1-1.el7_1.noarch                       97/104 
  Verifying  : nss-3.28.4-15.el7_4.x86_64                                98/104 
  Verifying  : yum-3.4.3-154.el7.centos.1.noarch                         99/104 
  Verifying  : glibc-common-2.17-196.el7_4.2.x86_64                     100/104 
  Verifying  : info-5.1-4.el7.x86_64                                    101/104 
  Verifying  : nss-softokn-freebl-3.28.3-8.el7_4.x86_64                 102/104 
  Verifying  : diffutils-3.3-4.el7.x86_64                               103/104 
  Verifying  : cpio-2.11-25.el7_4.x86_64                                104/104 

Installed:
  distribution-gpg-keys.noarch 0:1.19-1.el7                                     
  shadow-utils.x86_64 2:4.1.5.1-24.el7                                          
  yum.noarch 0:3.4.3-154.el7.centos.1                                           
  yum-utils.noarch 0:1.1.31-42.el7                                              

Dependency Installed:
  audit-libs.x86_64 0:2.7.6-3.el7                                               
  basesystem.noarch 0:10.0-7.el7.centos                                         
  bash.x86_64 0:4.2.46-29.el7_4                                                 
  bzip2-libs.x86_64 0:1.0.6-13.el7                                              
  ca-certificates.noarch 0:2017.2.14-71.el7                                     
  centos-release.x86_64 0:7-4.1708.el7.centos                                   
  chkconfig.x86_64 0:1.7.4-1.el7                                                
  coreutils.x86_64 0:8.22-18.el7                                                
  cpio.x86_64 0:2.11-25.el7_4                                                   
  curl.x86_64 0:7.29.0-42.el7_4.1                                               
  cyrus-sasl-lib.x86_64 0:2.1.26-21.el7                                         
  diffutils.x86_64 0:3.3-4.el7                                                  
  elfutils-libelf.x86_64 0:0.168-8.el7                                          
  expat.x86_64 0:2.1.0-10.el7_3                                                 
  file-libs.x86_64 0:5.11-33.el7                                                
  filesystem.x86_64 0:3.2-21.el7                                                
  findutils.x86_64 1:4.5.11-5.el7                                               
  gawk.x86_64 0:4.0.2-4.el7_3.1                                                 
  gdbm.x86_64 0:1.10-8.el7                                                      
  glib2.x86_64 0:2.50.3-3.el7                                                   
  glibc.x86_64 0:2.17-196.el7_4.2                                               
  glibc-common.x86_64 0:2.17-196.el7_4.2                                        
  gmp.x86_64 1:6.0.0-15.el7                                                     
  gnupg2.x86_64 0:2.0.22-4.el7                                                  
  gpgme.x86_64 0:1.3.2-5.el7                                                    
  grep.x86_64 0:2.20-3.el7                                                      
  info.x86_64 0:5.1-4.el7                                                       
  keyutils-libs.x86_64 0:1.5.8-3.el7                                            
  krb5-libs.x86_64 0:1.15.1-8.el7                                               
  libacl.x86_64 0:2.2.51-12.el7                                                 
  libassuan.x86_64 0:2.1.0-3.el7                                                
  libattr.x86_64 0:2.4.46-12.el7                                                
  libblkid.x86_64 0:2.23.2-43.el7_4.2                                           
  libcap.x86_64 0:2.22-9.el7                                                    
  libcap-ng.x86_64 0:0.7.5-4.el7                                                
  libcom_err.x86_64 0:1.42.9-10.el7                                             
  libcurl.x86_64 0:7.29.0-42.el7_4.1                                            
  libdb.x86_64 0:5.3.21-21.el7_4                                                
  libdb-utils.x86_64 0:5.3.21-21.el7_4                                          
  libffi.x86_64 0:3.0.13-18.el7                                                 
  libgcc.x86_64 0:4.8.5-16.el7_4.2                                              
  libgcrypt.x86_64 0:1.5.3-14.el7                                               
  libgpg-error.x86_64 0:1.12-3.el7                                              
  libidn.x86_64 0:1.28-4.el7                                                    
  libmount.x86_64 0:2.23.2-43.el7_4.2                                           
  libselinux.x86_64 0:2.5-11.el7                                                
  libsemanage.x86_64 0:2.5-8.el7                                                
  libsepol.x86_64 0:2.5-6.el7                                                   
  libssh2.x86_64 0:1.4.3-10.el7_2.1                                             
  libstdc++.x86_64 0:4.8.5-16.el7_4.2                                           
  libtasn1.x86_64 0:4.10-1.el7                                                  
  libuuid.x86_64 0:2.23.2-43.el7_4.2                                            
  libverto.x86_64 0:0.2.5-4.el7                                                 
  libxml2.x86_64 0:2.9.1-6.el7_2.3                                              
  libxml2-python.x86_64 0:2.9.1-6.el7_2.3                                       
  lua.x86_64 0:5.1.4-15.el7                                                     
  ncurses.x86_64 0:5.9-14.20130511.el7_4                                        
  ncurses-base.noarch 0:5.9-14.20130511.el7_4                                   
  ncurses-libs.x86_64 0:5.9-14.20130511.el7_4                                   
  nspr.x86_64 0:4.13.1-1.0.el7_3                                                
  nss.x86_64 0:3.28.4-15.el7_4                                                  
  nss-pem.x86_64 0:1.0.3-4.el7                                                  
  nss-softokn.x86_64 0:3.28.3-8.el7_4                                           
  nss-softokn-freebl.x86_64 0:3.28.3-8.el7_4                                    
  nss-sysinit.x86_64 0:3.28.4-15.el7_4                                          
  nss-tools.x86_64 0:3.28.4-15.el7_4                                            
  nss-util.x86_64 0:3.28.4-3.el7                                                
  openldap.x86_64 0:2.4.44-5.el7                                                
  openssl-libs.x86_64 1:1.0.2k-8.el7                                            
  p11-kit.x86_64 0:0.23.5-3.el7                                                 
  p11-kit-trust.x86_64 0:0.23.5-3.el7                                           
  pcre.x86_64 0:8.32-17.el7                                                     
  pinentry.x86_64 0:0.8.1-17.el7                                                
  popt.x86_64 0:1.13-16.el7                                                     
  pth.x86_64 0:2.0.7-23.el7                                                     
  pygpgme.x86_64 0:0.3-9.el7                                                    
  pyliblzma.x86_64 0:0.5.3-11.el7                                               
  python.x86_64 0:2.7.5-58.el7                                                  
  python-chardet.noarch 0:2.2.1-1.el7_1                                         
  python-iniparse.noarch 0:0.4-9.el7                                            
  python-kitchen.noarch 0:1.1.1-5.el7                                           
  python-libs.x86_64 0:2.7.5-58.el7                                             
  python-pycurl.x86_64 0:7.19.0-19.el7                                          
  python-urlgrabber.noarch 0:3.10-8.el7                                         
  pyxattr.x86_64 0:0.5.1-5.el7                                                  
  readline.x86_64 0:6.2-10.el7                                                  
  rpm.x86_64 0:4.11.3-25.el7                                                    
  rpm-build-libs.x86_64 0:4.11.3-25.el7                                         
  rpm-libs.x86_64 0:4.11.3-25.el7                                               
  rpm-python.x86_64 0:4.11.3-25.el7                                             
  sed.x86_64 0:4.2.2-5.el7                                                      
  setup.noarch 0:2.8.71-7.el7                                                   
  shared-mime-info.x86_64 0:1.8-3.el7                                           
  sqlite.x86_64 0:3.7.17-8.el7                                                  
  tzdata.noarch 0:2018d-1.el7                                                   
  ustr.x86_64 0:1.0.4-16.el7                                                    
  xz-libs.x86_64 0:5.2.2-1.el7                                                  
  yum-metadata-parser.x86_64 0:1.1.4-10.el7                                     
  yum-plugin-fastestmirror.noarch 0:1.1.31-42.el7                               
  zlib.x86_64 0:1.2.7-17.el7                                                    

Complete!
Finish(bootstrap): yum install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/736198-epel-7-x86_64-1522751158.115147/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled HW Info plugin
Mock Version: 1.4.9
INFO: Mock Version: 1.4.9
Start: yum install
Failed to set locale, defaulting to C
copr_base                                                | 3.0 kB     00:00     
base                                                     | 3.6 kB     00:00     
epel                                                     | 4.7 kB     00:00     
extras                                                   | 3.4 kB     00:00     
sclo                                                     | 2.9 kB     00:00     
sclo-rh                                                  | 3.0 kB     00:00     
updates                                                  | 3.4 kB     00:00     
base/group_gz                                            | 156 kB     00:00     
epel/group_gz                                            | 266 kB     00:00     
Resolving Dependencies
--> Running transaction check
---> Package bash.x86_64 0:4.2.46-29.el7_4 will be installed
--> Processing Dependency: rtld(GNU_HASH) for package: bash-4.2.46-29.el7_4.x86_64
--> Processing Dependency: libdl.so.2(GLIBC_2.2.5)(64bit) for package: bash-4.2.46-29.el7_4.x86_64
--> Processing Dependency: libc.so.6(GLIBC_2.15)(64bit) for package: bash-4.2.46-29.el7_4.x86_64
--> Processing Dependency: libtinfo.so.5()(64bit) for package: bash-4.2.46-29.el7_4.x86_64
--> Processing Dependency: libdl.so.2()(64bit) for package: bash-4.2.46-29.el7_4.x86_64
---> Package bzip2.x86_64 0:1.0.6-13.el7 will be installed
--> Processing Dependency: bzip2-libs = 1.0.6-13.el7 for package: bzip2-1.0.6-13.el7.x86_64
--> Processing Dependency: libbz2.so.1()(64bit) for package: bzip2-1.0.6-13.el7.x86_64
---> Package coreutils.x86_64 0:8.22-18.el7 will be installed
--> Processing Dependency: ncurses for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libcrypto.so.10(libcrypto.so.10)(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libattr.so.1(ATTR_1.1)(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libacl.so.1(ACL_1.0)(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: gmp for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libselinux.so.1()(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libgmp.so.10()(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libcrypto.so.10()(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libcap.so.2()(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libattr.so.1()(64bit) for package: coreutils-8.22-18.el7.x86_64
--> Processing Dependency: libacl.so.1()(64bit) for package: coreutils-8.22-18.el7.x86_64
---> Package cpio.x86_64 0:2.11-25.el7_4 will be installed
---> Package diffutils.x86_64 0:3.3-4.el7 will be installed
---> Package epel-release.noarch 0:7-11 will be installed
--> Processing Dependency: redhat-release >= 7 for package: epel-release-7-11.noarch
---> Package epel-rpm-macros.noarch 0:7-15 will be installed
--> Processing Dependency: python-rpm-macros for package: epel-rpm-macros-7-15.noarch
--> Processing Dependency: python-srpm-macros for package: epel-rpm-macros-7-15.noarch
--> Processing Dependency: python2-rpm-macros for package: epel-rpm-macros-7-15.noarch
---> Package findutils.x86_64 1:4.5.11-5.el7 will be installed
---> Package gawk.x86_64 0:4.0.2-4.el7_3.1 will be installed
---> Package gcc.x86_64 0:4.8.5-16.el7_4.2 will be installed
--> Processing Dependency: libgomp = 4.8.5-16.el7_4.2 for package: gcc-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: cpp = 4.8.5-16.el7_4.2 for package: gcc-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: libgcc >= 4.8.5-16.el7_4.2 for package: gcc-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: glibc-devel >= 2.2.90-12 for package: gcc-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: binutils >= 2.20.51.0.2-12 for package: gcc-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: libz.so.1()(64bit) for package: gcc-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: libmpfr.so.4()(64bit) for package: gcc-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: libmpc.so.3()(64bit) for package: gcc-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: libgomp.so.1()(64bit) for package: gcc-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: libgcc_s.so.1()(64bit) for package: gcc-4.8.5-16.el7_4.2.x86_64
---> Package gcc-c++.x86_64 0:4.8.5-16.el7_4.2 will be installed
--> Processing Dependency: libstdc++-devel = 4.8.5-16.el7_4.2 for package: gcc-c++-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: libstdc++ = 4.8.5-16.el7_4.2 for package: gcc-c++-4.8.5-16.el7_4.2.x86_64
--> Processing Dependency: libstdc++.so.6()(64bit) for package: gcc-c++-4.8.5-16.el7_4.2.x86_64
---> Package grep.x86_64 0:2.20-3.el7 will be installed
--> Processing Dependency: libpcre.so.1()(64bit) for package: grep-2.20-3.el7.x86_64
---> Package gzip.x86_64 0:1.5-9.el7 will be installed
---> Package info.x86_64 0:5.1-4.el7 will be installed
---> Package make.x86_64 1:3.82-23.el7 will be installed
---> Package patch.x86_64 0:2.7.1-8.el7 will be installed
---> Package redhat-rpm-config.noarch 0:9.1.0-76.el7.centos will be installed
--> Processing Dependency: rpm >= 4.9.0 for package: redhat-rpm-config-9.1.0-76.el7.centos.noarch
--> Processing Dependency: dwz >= 0.4 for package: redhat-rpm-config-9.1.0-76.el7.centos.noarch
--> Processing Dependency: zip for package: redhat-rpm-config-9.1.0-76.el7.centos.noarch
--> Processing Dependency: perl-srpm-macros for package: redhat-rpm-config-9.1.0-76.el7.centos.noarch
--> Processing Dependency: perl(Getopt::Long) for package: redhat-rpm-config-9.1.0-76.el7.centos.noarch
--> Processing Dependency: /usr/bin/perl for package: redhat-rpm-config-9.1.0-76.el7.centos.noarch
---> Package rpm-build.x86_64 0:4.11.3-25.el7 will be installed
--> Processing Dependency: pkgconfig >= 1:0.24 for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: elfutils >= 0.128 for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: perl(threads) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: perl(Thread::Queue) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: perl(File::Temp) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: libpopt.so.0(LIBPOPT_0)(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: libelf.so.1(ELFUTILS_1.0)(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: file for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: /usr/bin/gdb-add-index for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: librpmio.so.3()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: librpmbuild.so.3()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: librpm.so.3()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: libpopt.so.0()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: libnss3.so()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: libmagic.so.1()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: liblzma.so.5()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: liblua-5.1.so()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: libelf.so.1()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
--> Processing Dependency: libdb-5.3.so()(64bit) for package: rpm-build-4.11.3-25.el7.x86_64
---> Package sed.x86_64 0:4.2.2-5.el7 will be installed
---> Package shadow-utils.x86_64 2:4.1.5.1-24.el7 will be installed
--> Processing Dependency: audit-libs >= 1.6.5 for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: setup for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libsemanage.so.1(LIBSEMANAGE_1.0)(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libsemanage.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
--> Processing Dependency: libaudit.so.1()(64bit) for package: 2:shadow-utils-4.1.5.1-24.el7.x86_64
---> Package tar.x86_64 2:1.26-32.el7 will be installed
---> Package unzip.x86_64 0:6.0-16.el7 will be installed
---> Package util-linux.x86_64 0:2.23.2-43.el7_4.2 will be installed
--> Processing Dependency: libuuid = 2.23.2-43.el7_4.2 for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libmount = 2.23.2-43.el7_4.2 for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid = 2.23.2-43.el7_4.2 for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: pam >= 1.1.3-7 for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libuuid.so.1(UUID_1.0)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libutempter.so.0(UTEMPTER_1.1)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libudev.so.1(LIBUDEV_183)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libsystemd.so.0(LIBSYSTEMD_209)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libpam_misc.so.0(LIBPAM_MISC_1.0)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libpam.so.0(LIBPAM_1.0)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libmount.so.1(MOUNT_2.25)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libmount.so.1(MOUNT_2.23)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libmount.so.1(MOUNT_2.22)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libmount.so.1(MOUNT_2.21)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libmount.so.1(MOUNT_2.20)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libmount.so.1(MOUNT_2.19)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1(BLKID_2.21)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1(BLKID_2.20)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1(BLKID_2.18)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1(BLKID_2.17)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1(BLKID_2.15)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1(BLKID_1.0)(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: /etc/pam.d/system-auth for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libuuid.so.1()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libutempter.so.0()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libuser.so.1()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libudev.so.1()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libsystemd.so.0()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libpam_misc.so.0()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libpam.so.0()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libmount.so.1()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libcap-ng.so.0()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
--> Processing Dependency: libblkid.so.1()(64bit) for package: util-linux-2.23.2-43.el7_4.2.x86_64
---> Package which.x86_64 0:2.20-7.el7 will be installed
---> Package xz.x86_64 0:5.2.2-1.el7 will be installed
--> Running transaction check
---> Package audit-libs.x86_64 0:2.7.6-3.el7 will be installed
---> Package binutils.x86_64 0:2.25.1-32.base.el7_4.2 will be installed
--> Processing Dependency: /usr/sbin/alternatives for package: binutils-2.25.1-32.base.el7_4.2.x86_64
--> Processing Dependency: /usr/sbin/alternatives for package: binutils-2.25.1-32.base.el7_4.2.x86_64
---> Package bzip2-libs.x86_64 0:1.0.6-13.el7 will be installed
---> Package centos-release.x86_64 0:7-4.1708.el7.centos will be installed
---> Package cpp.x86_64 0:4.8.5-16.el7_4.2 will be installed
--> Processing Dependency: filesystem >= 3 for package: cpp-4.8.5-16.el7_4.2.x86_64
---> Package dwz.x86_64 0:0.11-3.el7 will be installed
---> Package elfutils.x86_64 0:0.168-8.el7 will be installed
--> Processing Dependency: elfutils-libs(x86-64) = 0.168-8.el7 for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.167)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.165)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.158)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.149)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.148)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.138)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.130)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.127)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.126)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1(ELFUTILS_0.122)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libasm.so.1(ELFUTILS_1.0)(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libdw.so.1()(64bit) for package: elfutils-0.168-8.el7.x86_64
--> Processing Dependency: libasm.so.1()(64bit) for package: elfutils-0.168-8.el7.x86_64
---> Package elfutils-libelf.x86_64 0:0.168-8.el7 will be installed
---> Package file.x86_64 0:5.11-33.el7 will be installed
---> Package file-libs.x86_64 0:5.11-33.el7 will be installed
---> Package gdb.x86_64 0:7.6.1-100.el7_4.1 will be installed
--> Processing Dependency: libreadline.so.6()(64bit) for package: gdb-7.6.1-100.el7_4.1.x86_64
--> Processing Dependency: libpython2.7.so.1.0()(64bit) for package: gdb-7.6.1-100.el7_4.1.x86_64
--> Processing Dependency: libexpat.so.1()(64bit) for package: gdb-7.6.1-100.el7_4.1.x86_64
---> Package glibc.x86_64 0:2.17-196.el7_4.2 will be installed
--> Processing Dependency: glibc-common = 2.17-196.el7_4.2 for package: glibc-2.17-196.el7_4.2.x86_64
--> Processing Dependency: libfreebl3.so(NSSRAWHASH_3.12.3)(64bit) for package: glibc-2.17-196.el7_4.2.x86_64
--> Processing Dependency: basesystem for package: glibc-2.17-196.el7_4.2.x86_64
--> Processing Dependency: libfreebl3.so()(64bit) for package: glibc-2.17-196.el7_4.2.x86_64
---> Package glibc-devel.x86_64 0:2.17-196.el7_4.2 will be installed
--> Processing Dependency: glibc-headers = 2.17-196.el7_4.2 for package: glibc-devel-2.17-196.el7_4.2.x86_64
--> Processing Dependency: glibc-headers for package: glibc-devel-2.17-196.el7_4.2.x86_64
---> Package gmp.x86_64 1:6.0.0-15.el7 will be installed
---> Package libacl.x86_64 0:2.2.51-12.el7 will be installed
---> Package libattr.x86_64 0:2.4.46-12.el7 will be installed
---> Package libblkid.x86_64 0:2.23.2-43.el7_4.2 will be installed
---> Package libcap.x86_64 0:2.22-9.el7 will be installed
---> Package libcap-ng.x86_64 0:0.7.5-4.el7 will be installed
---> Package libdb.x86_64 0:5.3.21-21.el7_4 will be installed
---> Package libgcc.x86_64 0:4.8.5-16.el7_4.2 will be installed
---> Package libgomp.x86_64 0:4.8.5-16.el7_4.2 will be installed
---> Package libmount.x86_64 0:2.23.2-43.el7_4.2 will be installed
---> Package libmpc.x86_64 0:1.0.1-3.el7 will be installed
---> Package libselinux.x86_64 0:2.5-11.el7 will be installed
--> Processing Dependency: libsepol(x86-64) >= 2.5-6 for package: libselinux-2.5-11.el7.x86_64
--> Processing Dependency: libsepol.so.1(LIBSEPOL_1.0)(64bit) for package: libselinux-2.5-11.el7.x86_64
--> Processing Dependency: libsepol.so.1()(64bit) for package: libselinux-2.5-11.el7.x86_64
---> Package libsemanage.x86_64 0:2.5-8.el7 will be installed
--> Processing Dependency: libustr-1.0.so.1(USTR_1.0.1)(64bit) for package: libsemanage-2.5-8.el7.x86_64
--> Processing Dependency: libustr-1.0.so.1(USTR_1.0)(64bit) for package: libsemanage-2.5-8.el7.x86_64
--> Processing Dependency: libustr-1.0.so.1()(64bit) for package: libsemanage-2.5-8.el7.x86_64
---> Package libstdc++.x86_64 0:4.8.5-16.el7_4.2 will be installed
---> Package libstdc++-devel.x86_64 0:4.8.5-16.el7_4.2 will be installed
---> Package libuser.x86_64 0:0.60-7.el7_1 will be installed
--> Processing Dependency: libldap-2.4.so.2()(64bit) for package: libuser-0.60-7.el7_1.x86_64
--> Processing Dependency: libgobject-2.0.so.0()(64bit) for package: libuser-0.60-7.el7_1.x86_64
--> Processing Dependency: libgmodule-2.0.so.0()(64bit) for package: libuser-0.60-7.el7_1.x86_64
--> Processing Dependency: libglib-2.0.so.0()(64bit) for package: libuser-0.60-7.el7_1.x86_64
---> Package libutempter.x86_64 0:1.1.6-4.el7 will be installed
---> Package libuuid.x86_64 0:2.23.2-43.el7_4.2 will be installed
---> Package lua.x86_64 0:5.1.4-15.el7 will be installed
---> Package mpfr.x86_64 0:3.1.1-4.el7 will be installed
---> Package ncurses.x86_64 0:5.9-14.20130511.el7_4 will be installed
---> Package ncurses-libs.x86_64 0:5.9-14.20130511.el7_4 will be installed
--> Processing Dependency: ncurses-base = 5.9-14.20130511.el7_4 for package: ncurses-libs-5.9-14.20130511.el7_4.x86_64
---> Package nss.x86_64 0:3.28.4-15.el7_4 will be installed
--> Processing Dependency: nss-util >= 3.28.4-2 for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: nss-softokn(x86-64) >= 3.28.3-4 for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: nspr >= 4.13.1 for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: nss-system-init for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: nss-pem(x86-64) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so(NSSUTIL_3.24)(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so(NSSUTIL_3.21)(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so(NSSUTIL_3.17.1)(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so(NSSUTIL_3.15)(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so(NSSUTIL_3.14)(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so(NSSUTIL_3.13)(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so(NSSUTIL_3.12.5)(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so(NSSUTIL_3.12.3)(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so(NSSUTIL_3.12)(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libplds4.so()(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libplc4.so()(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnssutil3.so()(64bit) for package: nss-3.28.4-15.el7_4.x86_64
--> Processing Dependency: libnspr4.so()(64bit) for package: nss-3.28.4-15.el7_4.x86_64
---> Package openssl-libs.x86_64 1:1.0.2k-8.el7 will be installed
--> Processing Dependency: ca-certificates >= 2008-5 for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libkrb5.so.3(krb5_3_MIT)(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libk5crypto.so.3(k5crypto_3_MIT)(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libkrb5.so.3()(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libk5crypto.so.3()(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libgssapi_krb5.so.2()(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
--> Processing Dependency: libcom_err.so.2()(64bit) for package: 1:openssl-libs-1.0.2k-8.el7.x86_64
---> Package pam.x86_64 0:1.1.8-18.el7 will be installed
--> Processing Dependency: libpwquality >= 0.9.9 for package: pam-1.1.8-18.el7.x86_64
--> Processing Dependency: cracklib-dicts >= 2.8 for package: pam-1.1.8-18.el7.x86_64
--> Processing Dependency: libcrack.so.2()(64bit) for package: pam-1.1.8-18.el7.x86_64
---> Package pcre.x86_64 0:8.32-17.el7 will be installed
---> Package perl.x86_64 4:5.16.3-292.el7 will be installed
--> Processing Dependency: perl-libs = 4:5.16.3-292.el7 for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Socket) >= 1.3 for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Scalar::Util) >= 1.10 for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl-macros for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl-libs for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(threads::shared) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(constant) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Time::Local) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Time::HiRes) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Storable) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Socket) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Scalar::Util) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Pod::Simple::XHTML) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Pod::Simple::Search) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Filter::Util::Call) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(File::Spec::Unix) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(File::Spec::Functions) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(File::Spec) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(File::Path) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Exporter) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Cwd) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: perl(Carp) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: libperl.so()(64bit) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: libgdbm_compat.so.4()(64bit) for package: 4:perl-5.16.3-292.el7.x86_64
--> Processing Dependency: libgdbm.so.4()(64bit) for package: 4:perl-5.16.3-292.el7.x86_64
---> Package perl-File-Temp.noarch 0:0.23.01-3.el7 will be installed
---> Package perl-Getopt-Long.noarch 0:2.40-2.el7 will be installed
--> Processing Dependency: perl(Pod::Usage) >= 1.14 for package: perl-Getopt-Long-2.40-2.el7.noarch
--> Processing Dependency: perl(Text::ParseWords) for package: perl-Getopt-Long-2.40-2.el7.noarch
---> Package perl-Thread-Queue.noarch 0:3.02-2.el7 will be installed
---> Package perl-srpm-macros.noarch 0:1-8.el7 will be installed
---> Package perl-threads.x86_64 0:1.87-4.el7 will be installed
---> Package pkgconfig.x86_64 1:0.27.1-4.el7 will be installed
---> Package popt.x86_64 0:1.13-16.el7 will be installed
---> Package python-rpm-macros.noarch 0:3-18.el7 will be installed
---> Package python-srpm-macros.noarch 0:3-18.el7 will be installed
---> Package python2-rpm-macros.noarch 0:3-18.el7 will be installed
---> Package rpm.x86_64 0:4.11.3-25.el7 will be installed
--> Processing Dependency: curl for package: rpm-4.11.3-25.el7.x86_64
--> Processing Dependency: /usr/bin/db_stat for package: rpm-4.11.3-25.el7.x86_64
---> Package rpm-build-libs.x86_64 0:4.11.3-25.el7 will be installed
--> Processing Dependency: /usr/bin/gpg2 for package: rpm-build-libs-4.11.3-25.el7.x86_64
---> Package rpm-libs.x86_64 0:4.11.3-25.el7 will be installed
---> Package setup.noarch 0:2.8.71-7.el7 will be installed
---> Package systemd-libs.x86_64 0:219-42.el7_4.10 will be installed
--> Processing Dependency: libgcrypt.so.11(GCRYPT_1.2)(64bit) for package: systemd-libs-219-42.el7_4.10.x86_64
--> Processing Dependency: libgpg-error.so.0()(64bit) for package: systemd-libs-219-42.el7_4.10.x86_64
--> Processing Dependency: libgcrypt.so.11()(64bit) for package: systemd-libs-219-42.el7_4.10.x86_64
---> Package xz-libs.x86_64 0:5.2.2-1.el7 will be installed
---> Package zip.x86_64 0:3.0-11.el7 will be installed
---> Package zlib.x86_64 0:1.2.7-17.el7 will be installed
--> Running transaction check
---> Package basesystem.noarch 0:10.0-7.el7.centos will be installed
---> Package ca-certificates.noarch 0:2017.2.14-71.el7 will be installed
--> Processing Dependency: p11-kit-trust >= 0.23.5 for package: ca-certificates-2017.2.14-71.el7.noarch
--> Processing Dependency: p11-kit >= 0.23.5 for package: ca-certificates-2017.2.14-71.el7.noarch
---> Package chkconfig.x86_64 0:1.7.4-1.el7 will be installed
---> Package cracklib.x86_64 0:2.9.0-11.el7 will be installed
---> Package cracklib-dicts.x86_64 0:2.9.0-11.el7 will be installed
---> Package curl.x86_64 0:7.29.0-42.el7_4.1 will be installed
--> Processing Dependency: libcurl = 7.29.0-42.el7_4.1 for package: curl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libcurl.so.4()(64bit) for package: curl-7.29.0-42.el7_4.1.x86_64
---> Package elfutils-libs.x86_64 0:0.168-8.el7 will be installed
--> Processing Dependency: default-yama-scope for package: elfutils-libs-0.168-8.el7.x86_64
---> Package expat.x86_64 0:2.1.0-10.el7_3 will be installed
---> Package filesystem.x86_64 0:3.2-21.el7 will be installed
---> Package gdbm.x86_64 0:1.10-8.el7 will be installed
---> Package glib2.x86_64 0:2.50.3-3.el7 will be installed
--> Processing Dependency: shared-mime-info for package: glib2-2.50.3-3.el7.x86_64
--> Processing Dependency: libffi.so.6()(64bit) for package: glib2-2.50.3-3.el7.x86_64
---> Package glibc-common.x86_64 0:2.17-196.el7_4.2 will be installed
--> Processing Dependency: tzdata >= 2003a for package: glibc-common-2.17-196.el7_4.2.x86_64
---> Package glibc-headers.x86_64 0:2.17-196.el7_4.2 will be installed
--> Processing Dependency: kernel-headers >= 2.2.1 for package: glibc-headers-2.17-196.el7_4.2.x86_64
--> Processing Dependency: kernel-headers for package: glibc-headers-2.17-196.el7_4.2.x86_64
---> Package gnupg2.x86_64 0:2.0.22-4.el7 will be installed
--> Processing Dependency: pinentry for package: gnupg2-2.0.22-4.el7.x86_64
--> Processing Dependency: libassuan.so.0(LIBASSUAN_1.0)(64bit) for package: gnupg2-2.0.22-4.el7.x86_64
--> Processing Dependency: libpth.so.20()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64
--> Processing Dependency: libassuan.so.0()(64bit) for package: gnupg2-2.0.22-4.el7.x86_64
---> Package krb5-libs.x86_64 0:1.15.1-8.el7 will be installed
--> Processing Dependency: keyutils-libs >= 1.5.8 for package: krb5-libs-1.15.1-8.el7.x86_64
--> Processing Dependency: libkeyutils.so.1(KEYUTILS_1.5)(64bit) for package: krb5-libs-1.15.1-8.el7.x86_64
--> Processing Dependency: libkeyutils.so.1(KEYUTILS_1.0)(64bit) for package: krb5-libs-1.15.1-8.el7.x86_64
--> Processing Dependency: libkeyutils.so.1(KEYUTILS_0.3)(64bit) for package: krb5-libs-1.15.1-8.el7.x86_64
--> Processing Dependency: libverto.so.1()(64bit) for package: krb5-libs-1.15.1-8.el7.x86_64
--> Processing Dependency: libkeyutils.so.1()(64bit) for package: krb5-libs-1.15.1-8.el7.x86_64
---> Package libcom_err.x86_64 0:1.42.9-10.el7 will be installed
---> Package libdb-utils.x86_64 0:5.3.21-21.el7_4 will be installed
---> Package libgcrypt.x86_64 0:1.5.3-14.el7 will be installed
---> Package libgpg-error.x86_64 0:1.12-3.el7 will be installed
---> Package libpwquality.x86_64 0:1.2.3-4.el7 will be installed
---> Package libsepol.x86_64 0:2.5-6.el7 will be installed
---> Package ncurses-base.noarch 0:5.9-14.20130511.el7_4 will be installed
---> Package nspr.x86_64 0:4.13.1-1.0.el7_3 will be installed
---> Package nss-pem.x86_64 0:1.0.3-4.el7 will be installed
---> Package nss-softokn.x86_64 0:3.28.3-8.el7_4 will be installed
--> Processing Dependency: libsqlite3.so.0()(64bit) for package: nss-softokn-3.28.3-8.el7_4.x86_64
---> Package nss-softokn-freebl.x86_64 0:3.28.3-8.el7_4 will be installed
---> Package nss-sysinit.x86_64 0:3.28.4-15.el7_4 will be installed
---> Package nss-util.x86_64 0:3.28.4-3.el7 will be installed
---> Package openldap.x86_64 0:2.4.44-5.el7 will be installed
--> Processing Dependency: nss-tools for package: openldap-2.4.44-5.el7.x86_64
--> Processing Dependency: libsasl2.so.3()(64bit) for package: openldap-2.4.44-5.el7.x86_64
---> Package perl-Carp.noarch 0:1.26-244.el7 will be installed
---> Package perl-Exporter.noarch 0:5.68-3.el7 will be installed
---> Package perl-File-Path.noarch 0:2.09-2.el7 will be installed
---> Package perl-Filter.x86_64 0:1.49-3.el7 will be installed
---> Package perl-PathTools.x86_64 0:3.40-5.el7 will be installed
---> Package perl-Pod-Simple.noarch 1:3.28-4.el7 will be installed
--> Processing Dependency: perl(Pod::Escapes) >= 1.04 for package: 1:perl-Pod-Simple-3.28-4.el7.noarch
--> Processing Dependency: perl(Encode) for package: 1:perl-Pod-Simple-3.28-4.el7.noarch
---> Package perl-Pod-Usage.noarch 0:1.63-3.el7 will be installed
--> Processing Dependency: perl(Pod::Text) >= 3.15 for package: perl-Pod-Usage-1.63-3.el7.noarch
--> Processing Dependency: perl-Pod-Perldoc for package: perl-Pod-Usage-1.63-3.el7.noarch
---> Package perl-Scalar-List-Utils.x86_64 0:1.27-248.el7 will be installed
---> Package perl-Socket.x86_64 0:2.010-4.el7 will be installed
---> Package perl-Storable.x86_64 0:2.45-3.el7 will be installed
---> Package perl-Text-ParseWords.noarch 0:3.29-4.el7 will be installed
---> Package perl-Time-HiRes.x86_64 4:1.9725-3.el7 will be installed
---> Package perl-Time-Local.noarch 0:1.2300-2.el7 will be installed
---> Package perl-constant.noarch 0:1.27-2.el7 will be installed
---> Package perl-libs.x86_64 4:5.16.3-292.el7 will be installed
---> Package perl-macros.x86_64 4:5.16.3-292.el7 will be installed
---> Package perl-threads-shared.x86_64 0:1.43-6.el7 will be installed
---> Package python-libs.x86_64 0:2.7.5-58.el7 will be installed
---> Package readline.x86_64 0:6.2-10.el7 will be installed
---> Package ustr.x86_64 0:1.0.4-16.el7 will be installed
--> Running transaction check
---> Package cyrus-sasl-lib.x86_64 0:2.1.26-21.el7 will be installed
---> Package elfutils-default-yama-scope.noarch 0:0.168-8.el7 will be installed
---> Package kernel-headers.x86_64 0:3.10.0-693.21.1.el7 will be installed
---> Package keyutils-libs.x86_64 0:1.5.8-3.el7 will be installed
---> Package libassuan.x86_64 0:2.1.0-3.el7 will be installed
---> Package libcurl.x86_64 0:7.29.0-42.el7_4.1 will be installed
--> Processing Dependency: libssh2(x86-64) >= 1.4.3 for package: libcurl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libidn.so.11(LIBIDN_1.0)(64bit) for package: libcurl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libssh2.so.1()(64bit) for package: libcurl-7.29.0-42.el7_4.1.x86_64
--> Processing Dependency: libidn.so.11()(64bit) for package: libcurl-7.29.0-42.el7_4.1.x86_64
---> Package libffi.x86_64 0:3.0.13-18.el7 will be installed
---> Package libverto.x86_64 0:0.2.5-4.el7 will be installed
---> Package nss-tools.x86_64 0:3.28.4-15.el7_4 will be installed
---> Package p11-kit.x86_64 0:0.23.5-3.el7 will be installed
---> Package p11-kit-trust.x86_64 0:0.23.5-3.el7 will be installed
--> Processing Dependency: libtasn1.so.6(LIBTASN1_0_3)(64bit) for package: p11-kit-trust-0.23.5-3.el7.x86_64
--> Processing Dependency: libtasn1.so.6()(64bit) for package: p11-kit-trust-0.23.5-3.el7.x86_64
---> Package perl-Encode.x86_64 0:2.51-7.el7 will be installed
---> Package perl-Pod-Escapes.noarch 1:1.04-292.el7 will be installed
---> Package perl-Pod-Perldoc.noarch 0:3.20-4.el7 will be installed
--> Processing Dependency: perl(parent) for package: perl-Pod-Perldoc-3.20-4.el7.noarch
--> Processing Dependency: perl(HTTP::Tiny) for package: perl-Pod-Perldoc-3.20-4.el7.noarch
--> Processing Dependency: groff-base for package: perl-Pod-Perldoc-3.20-4.el7.noarch
---> Package perl-podlators.noarch 0:2.5.1-3.el7 will be installed
---> Package pinentry.x86_64 0:0.8.1-17.el7 will be installed
---> Package pth.x86_64 0:2.0.7-23.el7 will be installed
---> Package shared-mime-info.x86_64 0:1.8-3.el7 will be installed
--> Processing Dependency: libxml2.so.2(LIBXML2_2.4.30)(64bit) for package: shared-mime-info-1.8-3.el7.x86_64
--> Processing Dependency: libxml2.so.2()(64bit) for package: shared-mime-info-1.8-3.el7.x86_64
---> Package sqlite.x86_64 0:3.7.17-8.el7 will be installed
---> Package tzdata.noarch 0:2018d-1.el7 will be installed
--> Running transaction check
---> Package groff-base.x86_64 0:1.22.2-8.el7 will be installed
---> Package libidn.x86_64 0:1.28-4.el7 will be installed
---> Package libssh2.x86_64 0:1.4.3-10.el7_2.1 will be installed
---> Package libtasn1.x86_64 0:4.10-1.el7 will be installed
---> Package libxml2.x86_64 0:2.9.1-6.el7_2.3 will be installed
---> Package perl-HTTP-Tiny.noarch 0:0.033-3.el7 will be installed
---> Package perl-parent.noarch 1:0.225-244.el7 will be installed
--> Finished Dependency Resolution

Dependencies Resolved

================================================================================
 Package                      Arch    Version                    Repository
                                                                           Size
================================================================================
Installing for group install "Buildsystem building group":
 bash                         x86_64  4.2.46-29.el7_4            updates  1.0 M
 bzip2                        x86_64  1.0.6-13.el7               base      52 k
 coreutils                    x86_64  8.22-18.el7                base     3.3 M
 cpio                         x86_64  2.11-25.el7_4              updates  210 k
 diffutils                    x86_64  3.3-4.el7                  base     322 k
 epel-release                 noarch  7-11                       epel      15 k
 epel-rpm-macros              noarch  7-15                       epel      13 k
 findutils                    x86_64  1:4.5.11-5.el7             base     559 k
 gawk                         x86_64  4.0.2-4.el7_3.1            base     874 k
 gcc                          x86_64  4.8.5-16.el7_4.2           updates   16 M
 gcc-c++                      x86_64  4.8.5-16.el7_4.2           updates  7.2 M
 grep                         x86_64  2.20-3.el7                 base     344 k
 gzip                         x86_64  1.5-9.el7                  base     129 k
 info                         x86_64  5.1-4.el7                  base     233 k
 make                         x86_64  1:3.82-23.el7              base     420 k
 patch                        x86_64  2.7.1-8.el7                base     110 k
 redhat-rpm-config            noarch  9.1.0-76.el7.centos        base      79 k
 rpm-build                    x86_64  4.11.3-25.el7              base     146 k
 sed                          x86_64  4.2.2-5.el7                base     231 k
 shadow-utils                 x86_64  2:4.1.5.1-24.el7           base     1.1 M
 tar                          x86_64  2:1.26-32.el7              base     845 k
 unzip                        x86_64  6.0-16.el7                 base     169 k
 util-linux                   x86_64  2.23.2-43.el7_4.2          updates  2.0 M
 which                        x86_64  2.20-7.el7                 base      41 k
 xz                           x86_64  5.2.2-1.el7                base     229 k
Installing for dependencies:
 audit-libs                   x86_64  2.7.6-3.el7                base      96 k
 basesystem                   noarch  10.0-7.el7.centos          base     5.0 k
 binutils                     x86_64  2.25.1-32.base.el7_4.2     updates  5.4 M
 bzip2-libs                   x86_64  1.0.6-13.el7               base      40 k
 ca-certificates              noarch  2017.2.14-71.el7           base     472 k
 centos-release               x86_64  7-4.1708.el7.centos        base      23 k
 chkconfig                    x86_64  1.7.4-1.el7                base     181 k
 cpp                          x86_64  4.8.5-16.el7_4.2           updates  6.0 M
 cracklib                     x86_64  2.9.0-11.el7               base      80 k
 cracklib-dicts               x86_64  2.9.0-11.el7               base     3.6 M
 curl                         x86_64  7.29.0-42.el7_4.1          updates  267 k
 cyrus-sasl-lib               x86_64  2.1.26-21.el7              base     155 k
 dwz                          x86_64  0.11-3.el7                 base      99 k
 elfutils                     x86_64  0.168-8.el7                base     279 k
 elfutils-default-yama-scope  noarch  0.168-8.el7                base      30 k
 elfutils-libelf              x86_64  0.168-8.el7                base     191 k
 elfutils-libs                x86_64  0.168-8.el7                base     264 k
 expat                        x86_64  2.1.0-10.el7_3             base      81 k
 file                         x86_64  5.11-33.el7                base      57 k
 file-libs                    x86_64  5.11-33.el7                base     340 k
 filesystem                   x86_64  3.2-21.el7                 base     1.0 M
 gdb                          x86_64  7.6.1-100.el7_4.1          updates  2.4 M
 gdbm                         x86_64  1.10-8.el7                 base      70 k
 glib2                        x86_64  2.50.3-3.el7               base     2.3 M
 glibc                        x86_64  2.17-196.el7_4.2           updates  3.6 M
 glibc-common                 x86_64  2.17-196.el7_4.2           updates   11 M
 glibc-devel                  x86_64  2.17-196.el7_4.2           updates  1.1 M
 glibc-headers                x86_64  2.17-196.el7_4.2           updates  676 k
 gmp                          x86_64  1:6.0.0-15.el7             base     281 k
 gnupg2                       x86_64  2.0.22-4.el7               base     1.5 M
 groff-base                   x86_64  1.22.2-8.el7               base     942 k
 kernel-headers               x86_64  3.10.0-693.21.1.el7        updates  6.0 M
 keyutils-libs                x86_64  1.5.8-3.el7                base      25 k
 krb5-libs                    x86_64  1.15.1-8.el7               base     747 k
 libacl                       x86_64  2.2.51-12.el7              base      27 k
 libassuan                    x86_64  2.1.0-3.el7                base      63 k
 libattr                      x86_64  2.4.46-12.el7              base      18 k
 libblkid                     x86_64  2.23.2-43.el7_4.2          updates  176 k
 libcap                       x86_64  2.22-9.el7                 base      47 k
 libcap-ng                    x86_64  0.7.5-4.el7                base      25 k
 libcom_err                   x86_64  1.42.9-10.el7              base      40 k
 libcurl                      x86_64  7.29.0-42.el7_4.1          updates  219 k
 libdb                        x86_64  5.3.21-21.el7_4            updates  719 k
 libdb-utils                  x86_64  5.3.21-21.el7_4            updates  132 k
 libffi                       x86_64  3.0.13-18.el7              base      30 k
 libgcc                       x86_64  4.8.5-16.el7_4.2           updates   98 k
 libgcrypt                    x86_64  1.5.3-14.el7               base     263 k
 libgomp                      x86_64  4.8.5-16.el7_4.2           updates  154 k
 libgpg-error                 x86_64  1.12-3.el7                 base      87 k
 libidn                       x86_64  1.28-4.el7                 base     209 k
 libmount                     x86_64  2.23.2-43.el7_4.2          updates  178 k
 libmpc                       x86_64  1.0.1-3.el7                base      51 k
 libpwquality                 x86_64  1.2.3-4.el7                base      84 k
 libselinux                   x86_64  2.5-11.el7                 base     162 k
 libsemanage                  x86_64  2.5-8.el7                  base     145 k
 libsepol                     x86_64  2.5-6.el7                  base     288 k
 libssh2                      x86_64  1.4.3-10.el7_2.1           base     134 k
 libstdc++                    x86_64  4.8.5-16.el7_4.2           updates  301 k
 libstdc++-devel              x86_64  4.8.5-16.el7_4.2           updates  1.5 M
 libtasn1                     x86_64  4.10-1.el7                 base     320 k
 libuser                      x86_64  0.60-7.el7_1               base     398 k
 libutempter                  x86_64  1.1.6-4.el7                base      25 k
 libuuid                      x86_64  2.23.2-43.el7_4.2          updates   79 k
 libverto                     x86_64  0.2.5-4.el7                base      16 k
 libxml2                      x86_64  2.9.1-6.el7_2.3            base     668 k
 lua                          x86_64  5.1.4-15.el7               base     201 k
 mpfr                         x86_64  3.1.1-4.el7                base     203 k
 ncurses                      x86_64  5.9-14.20130511.el7_4      updates  304 k
 ncurses-base                 noarch  5.9-14.20130511.el7_4      updates   68 k
 ncurses-libs                 x86_64  5.9-14.20130511.el7_4      updates  316 k
 nspr                         x86_64  4.13.1-1.0.el7_3           base     126 k
 nss                          x86_64  3.28.4-15.el7_4            updates  849 k
 nss-pem                      x86_64  1.0.3-4.el7                base      73 k
 nss-softokn                  x86_64  3.28.3-8.el7_4             updates  310 k
 nss-softokn-freebl           x86_64  3.28.3-8.el7_4             updates  214 k
 nss-sysinit                  x86_64  3.28.4-15.el7_4            updates   60 k
 nss-tools                    x86_64  3.28.4-15.el7_4            updates  501 k
 nss-util                     x86_64  3.28.4-3.el7               base      73 k
 openldap                     x86_64  2.4.44-5.el7               base     354 k
 openssl-libs                 x86_64  1:1.0.2k-8.el7             base     1.2 M
 p11-kit                      x86_64  0.23.5-3.el7               base     252 k
 p11-kit-trust                x86_64  0.23.5-3.el7               base     129 k
 pam                          x86_64  1.1.8-18.el7               base     717 k
 pcre                         x86_64  8.32-17.el7                base     422 k
 perl                         x86_64  4:5.16.3-292.el7           base     8.0 M
 perl-Carp                    noarch  1.26-244.el7               base      19 k
 perl-Encode                  x86_64  2.51-7.el7                 base     1.5 M
 perl-Exporter                noarch  5.68-3.el7                 base      28 k
 perl-File-Path               noarch  2.09-2.el7                 base      26 k
 perl-File-Temp               noarch  0.23.01-3.el7              base      56 k
 perl-Filter                  x86_64  1.49-3.el7                 base      76 k
 perl-Getopt-Long             noarch  2.40-2.el7                 base      56 k
 perl-HTTP-Tiny               noarch  0.033-3.el7                base      38 k
 perl-PathTools               x86_64  3.40-5.el7                 base      82 k
 perl-Pod-Escapes             noarch  1:1.04-292.el7             base      51 k
 perl-Pod-Perldoc             noarch  3.20-4.el7                 base      87 k
 perl-Pod-Simple              noarch  1:3.28-4.el7               base     216 k
 perl-Pod-Usage               noarch  1.63-3.el7                 base      27 k
 perl-Scalar-List-Utils       x86_64  1.27-248.el7               base      36 k
 perl-Socket                  x86_64  2.010-4.el7                base      49 k
 perl-Storable                x86_64  2.45-3.el7                 base      77 k
 perl-Text-ParseWords         noarch  3.29-4.el7                 base      14 k
 perl-Thread-Queue            noarch  3.02-2.el7                 base      17 k
 perl-Time-HiRes              x86_64  4:1.9725-3.el7             base      45 k
 perl-Time-Local              noarch  1.2300-2.el7               base      24 k
 perl-constant                noarch  1.27-2.el7                 base      19 k
 perl-libs                    x86_64  4:5.16.3-292.el7           base     688 k
 perl-macros                  x86_64  4:5.16.3-292.el7           base      43 k
 perl-parent                  noarch  1:0.225-244.el7            base      12 k
 perl-podlators               noarch  2.5.1-3.el7                base     112 k
 perl-srpm-macros             noarch  1-8.el7                    base     4.6 k
 perl-threads                 x86_64  1.87-4.el7                 base      49 k
 perl-threads-shared          x86_64  1.43-6.el7                 base      39 k
 pinentry                     x86_64  0.8.1-17.el7               base      73 k
 pkgconfig                    x86_64  1:0.27.1-4.el7             base      54 k
 popt                         x86_64  1.13-16.el7                base      42 k
 pth                          x86_64  2.0.7-23.el7               base      89 k
 python-libs                  x86_64  2.7.5-58.el7               base     5.6 M
 python-rpm-macros            noarch  3-18.el7                   epel     6.2 k
 python-srpm-macros           noarch  3-18.el7                   epel     6.0 k
 python2-rpm-macros           noarch  3-18.el7                   epel     5.7 k
 readline                     x86_64  6.2-10.el7                 base     193 k
 rpm                          x86_64  4.11.3-25.el7              base     1.2 M
 rpm-build-libs               x86_64  4.11.3-25.el7              base     104 k
 rpm-libs                     x86_64  4.11.3-25.el7              base     275 k
 setup                        noarch  2.8.71-7.el7               base     165 k
 shared-mime-info             x86_64  1.8-3.el7                  base     312 k
 sqlite                       x86_64  3.7.17-8.el7               base     393 k
 systemd-libs                 x86_64  219-42.el7_4.10            updates  378 k
 tzdata                       noarch  2018d-1.el7                updates  481 k
 ustr                         x86_64  1.0.4-16.el7               base      92 k
 xz-libs                      x86_64  5.2.2-1.el7                base     103 k
 zip                          x86_64  3.0-11.el7                 base     260 k
 zlib                         x86_64  1.2.7-17.el7               base      90 k

Transaction Summary
================================================================================
Install  25 Packages (+134 Dependent packages)

Total download size: 119 M
Installed size: 429 M
Downloading packages:
warning: /var/lib/mock/736198-epel-7-x86_64-1522751158.115147/root/var/cache/yum/base/packages/bzip2-1.0.6-13.el7.x86_64.rpm: Header V3 RSA/SHA256 Signature, key ID f4a80eb5: NOKEY
Public key for bzip2-1.0.6-13.el7.x86_64.rpm is not installed
(1/72): bzip2-1.0.6-13.el7.x86_64.rpm                      |  52 kB   00:00     
(2/72): dwz-0.11-3.el7.x86_64.rpm                          |  99 kB   00:00     
(3/72): cracklib-2.9.0-11.el7.x86_64.rpm                   |  80 kB   00:00     
(4/72): elfutils-default-yama-scope-0.168-8.el7.noarch.rpm |  30 kB   00:00     
(5/72): elfutils-0.168-8.el7.x86_64.rpm                    | 279 kB   00:00     
Public key for binutils-2.25.1-32.base.el7_4.2.x86_64.rpm is not installed
(6/72): binutils-2.25.1-32.base.el7_4.2.x86_64.rpm         | 5.4 MB   00:00     
(7/72): elfutils-libs-0.168-8.el7.x86_64.rpm               | 264 kB   00:00     
(8/72): file-5.11-33.el7.x86_64.rpm                        |  57 kB   00:00     
warning: /var/lib/mock/736198-epel-7-x86_64-1522751158.115147/root/var/cache/yum/epel/packages/epel-release-7-11.noarch.rpm: Header V3 RSA/SHA256 Signature, key ID 352c64e5: NOKEY
Public key for epel-release-7-11.noarch.rpm is not installed
(9/72): epel-release-7-11.noarch.rpm                       |  15 kB   00:00     
(10/72): cpp-4.8.5-16.el7_4.2.x86_64.rpm                   | 6.0 MB   00:01     
(11/72): epel-rpm-macros-7-15.noarch.rpm                   |  13 kB   00:00     
(12/72): gdb-7.6.1-100.el7_4.1.x86_64.rpm                  | 2.4 MB   00:00     
(13/72): glibc-headers-2.17-196.el7_4.2.x86_64.rpm         | 676 kB   00:00     
(14/72): cracklib-dicts-2.9.0-11.el7.x86_64.rpm            | 3.6 MB   00:01     
(15/72): groff-base-1.22.2-8.el7.x86_64.rpm                | 942 kB   00:00     
(16/72): gcc-4.8.5-16.el7_4.2.x86_64.rpm                   |  16 MB   00:00     
(17/72): glibc-devel-2.17-196.el7_4.2.x86_64.rpm           | 1.1 MB   00:00     
(18/72): libgomp-4.8.5-16.el7_4.2.x86_64.rpm               | 154 kB   00:00     
(19/72): gzip-1.5-9.el7.x86_64.rpm                         | 129 kB   00:00     
(20/72): gcc-c++-4.8.5-16.el7_4.2.x86_64.rpm               | 7.2 MB   00:00     
(21/72): libstdc++-devel-4.8.5-16.el7_4.2.x86_64.rpm       | 1.5 MB   00:00     
(22/72): libpwquality-1.2.3-4.el7.x86_64.rpm               |  84 kB   00:00     
(23/72): kernel-headers-3.10.0-693.21.1.el7.x86_64.rpm     | 6.0 MB   00:00     
(24/72): libmpc-1.0.1-3.el7.x86_64.rpm                     |  51 kB   00:00     
(25/72): libutempter-1.1.6-4.el7.x86_64.rpm                |  25 kB   00:00     
(26/72): libuser-0.60-7.el7_1.x86_64.rpm                   | 398 kB   00:00     
(27/72): make-3.82-23.el7.x86_64.rpm                       | 420 kB   00:00     
(28/72): mpfr-3.1.1-4.el7.x86_64.rpm                       | 203 kB   00:00     
(29/72): perl-Carp-1.26-244.el7.noarch.rpm                 |  19 kB   00:00     
(30/72): perl-Exporter-5.68-3.el7.noarch.rpm               |  28 kB   00:00     
(31/72): patch-2.7.1-8.el7.x86_64.rpm                      | 110 kB   00:00     
(32/72): perl-File-Path-2.09-2.el7.noarch.rpm              |  26 kB   00:00     
(33/72): perl-Encode-2.51-7.el7.x86_64.rpm                 | 1.5 MB   00:00     
(34/72): perl-Getopt-Long-2.40-2.el7.noarch.rpm            |  56 kB   00:00     
(35/72): perl-HTTP-Tiny-0.033-3.el7.noarch.rpm             |  38 kB   00:00     
(36/72): pam-1.1.8-18.el7.x86_64.rpm                       | 717 kB   00:00     
(37/72): perl-PathTools-3.40-5.el7.x86_64.rpm              |  82 kB   00:00     
(38/72): perl-Filter-1.49-3.el7.x86_64.rpm                 |  76 kB   00:00     
(39/72): perl-Pod-Perldoc-3.20-4.el7.noarch.rpm            |  87 kB   00:00     
(40/72): perl-Pod-Simple-3.28-4.el7.noarch.rpm             | 216 kB   00:00     
(41/72): perl-File-Temp-0.23.01-3.el7.noarch.rpm           |  56 kB   00:00     
(42/72): perl-Pod-Usage-1.63-3.el7.noarch.rpm              |  27 kB   00:00     
(43/72): perl-Scalar-List-Utils-1.27-248.el7.x86_64.rpm    |  36 kB   00:00     
(44/72): perl-Storable-2.45-3.el7.x86_64.rpm               |  77 kB   00:00     
(45/72): perl-Text-ParseWords-3.29-4.el7.noarch.rpm        |  14 kB   00:00     
(46/72): perl-Pod-Escapes-1.04-292.el7.noarch.rpm          |  51 kB   00:00     
(47/72): perl-Thread-Queue-3.02-2.el7.noarch.rpm           |  17 kB   00:00     
(48/72): perl-Time-HiRes-1.9725-3.el7.x86_64.rpm           |  45 kB   00:00     
(49/72): perl-Time-Local-1.2300-2.el7.noarch.rpm           |  24 kB   00:00     
(50/72): perl-constant-1.27-2.el7.noarch.rpm               |  19 kB   00:00     
(51/72): perl-macros-5.16.3-292.el7.x86_64.rpm             |  43 kB   00:00     
(52/72): perl-libs-5.16.3-292.el7.x86_64.rpm               | 688 kB   00:00     
(53/72): perl-parent-0.225-244.el7.noarch.rpm              |  12 kB   00:00     
(54/72): perl-5.16.3-292.el7.x86_64.rpm                    | 8.0 MB   00:00     
(55/72): perl-podlators-2.5.1-3.el7.noarch.rpm             | 112 kB   00:00     
(56/72): perl-Socket-2.010-4.el7.x86_64.rpm                |  49 kB   00:00     
(57/72): perl-srpm-macros-1-8.el7.noarch.rpm               | 4.6 kB   00:00     
(58/72): perl-threads-1.87-4.el7.x86_64.rpm                |  49 kB   00:00     
(59/72): perl-threads-shared-1.43-6.el7.x86_64.rpm         |  39 kB   00:00     
(60/72): redhat-rpm-config-9.1.0-76.el7.centos.noarch.rpm  |  79 kB   00:00     
(61/72): rpm-build-4.11.3-25.el7.x86_64.rpm                | 146 kB   00:00     
(62/72): systemd-libs-219-42.el7_4.10.x86_64.rpm           | 378 kB   00:00     
(63/72): pkgconfig-0.27.1-4.el7.x86_64.rpm                 |  54 kB   00:00     
(64/72): tar-1.26-32.el7.x86_64.rpm                        | 845 kB   00:00     
(65/72): python-srpm-macros-3-18.el7.noarch.rpm            | 6.0 kB   00:00     
(66/72): python-rpm-macros-3-18.el7.noarch.rpm             | 6.2 kB   00:00     
(67/72): python2-rpm-macros-3-18.el7.noarch.rpm            | 5.7 kB   00:00     
(68/72): unzip-6.0-16.el7.x86_64.rpm                       | 169 kB   00:00     
(69/72): util-linux-2.23.2-43.el7_4.2.x86_64.rpm           | 2.0 MB   00:00     
(70/72): which-2.20-7.el7.x86_64.rpm                       |  41 kB   00:00     
(71/72): zip-3.0-11.el7.x86_64.rpm                         | 260 kB   00:00     
(72/72): xz-5.2.2-1.el7.x86_64.rpm                         | 229 kB   00:00     
--------------------------------------------------------------------------------
Total                                               24 MB/s | 119 MB  00:05     
Retrieving key from file:///usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7
Importing GPG key 0xF4A80EB5:
 Userid     : "CentOS-7 Key (CentOS 7 Official Signing Key) <security@centos.org>"
 Fingerprint: 6341 ab27 53d7 8a78 a7c2 7bb1 24c6 a8a7 f4a8 0eb5
 From       : /usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-7
Retrieving key from file:///usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7
Importing GPG key 0x352C64E5:
 Userid     : "Fedora EPEL (7) <epel@fedoraproject.org>"
 Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5
 From       : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-7
Running transaction check
Running transaction test
Transaction test succeeded
Running transaction
  Installing : libgcc-4.8.5-16.el7_4.2.x86_64                             1/159 
  Installing : centos-release-7-4.1708.el7.centos.x86_64                  2/159 
  Installing : setup-2.8.71-7.el7.noarch                                  3/159 
warning: /etc/hosts created as /etc/hosts.rpmnew
  Installing : filesystem-3.2-21.el7.x86_64                               4/159 
  Installing : python-srpm-macros-3-18.el7.noarch                         5/159 
  Installing : python-rpm-macros-3-18.el7.noarch                          6/159 
  Installing : basesystem-10.0-7.el7.centos.noarch                        7/159 
  Installing : kernel-headers-3.10.0-693.21.1.el7.x86_64                  8/159 
  Installing : python2-rpm-macros-3-18.el7.noarch                         9/159 
  Installing : ncurses-base-5.9-14.20130511.el7_4.noarch                 10/159 
  Installing : perl-srpm-macros-1-8.el7.noarch                           11/159 
  Installing : tzdata-2018d-1.el7.noarch                                 12/159 
  Installing : nss-softokn-freebl-3.28.3-8.el7_4.x86_64                  13/159 
  Installing : glibc-common-2.17-196.el7_4.2.x86_64                      14/159 
  Installing : glibc-2.17-196.el7_4.2.x86_64                             15/159 
  Installing : nspr-4.13.1-1.0.el7_3.x86_64                              16/159 
  Installing : libstdc++-4.8.5-16.el7_4.2.x86_64                         17/159 
  Installing : ncurses-libs-5.9-14.20130511.el7_4.x86_64                 18/159 
  Installing : bash-4.2.46-29.el7_4.x86_64                               19/159 
  Installing : libsepol-2.5-6.el7.x86_64                                 20/159 
  Installing : pcre-8.32-17.el7.x86_64                                   21/159 
  Installing : libselinux-2.5-11.el7.x86_64                              22/159 
  Installing : zlib-1.2.7-17.el7.x86_64                                  23/159 
  Installing : info-5.1-4.el7.x86_64                                     24/159 
  Installing : bzip2-libs-1.0.6-13.el7.x86_64                            25/159 
  Installing : xz-libs-5.2.2-1.el7.x86_64                                26/159 
  Installing : nss-util-3.28.4-3.el7.x86_64                              27/159 
  Installing : libdb-5.3.21-21.el7_4.x86_64                              28/159 
  Installing : elfutils-libelf-0.168-8.el7.x86_64                        29/159 
  Installing : 1:gmp-6.0.0-15.el7.x86_64                                 30/159 
  Installing : popt-1.13-16.el7.x86_64                                   31/159 
  Installing : readline-6.2-10.el7.x86_64                                32/159 
  Installing : libattr-2.4.46-12.el7.x86_64                              33/159 
  Installing : libacl-2.2.51-12.el7.x86_64                               34/159 
  Installing : libcap-2.22-9.el7.x86_64                                  35/159 
  Installing : lua-5.1.4-15.el7.x86_64                                   36/159 
  Installing : chkconfig-1.7.4-1.el7.x86_64                              37/159 
  Installing : mpfr-3.1.1-4.el7.x86_64                                   38/159 
  Installing : sed-4.2.2-5.el7.x86_64                                    39/159 
  Installing : libffi-3.0.13-18.el7.x86_64                               40/159 
  Installing : libgpg-error-1.12-3.el7.x86_64                            41/159 
  Installing : libmpc-1.0.1-3.el7.x86_64                                 42/159 
  Installing : grep-2.20-3.el7.x86_64                                    43/159 
  Installing : file-libs-5.11-33.el7.x86_64                              44/159 
  Installing : libcom_err-1.42.9-10.el7.x86_64                           45/159 
  Installing : libuuid-2.23.2-43.el7_4.2.x86_64                          46/159 
  Installing : libgcrypt-1.5.3-14.el7.x86_64                             47/159 
  Installing : p11-kit-0.23.5-3.el7.x86_64                               48/159 
  Installing : sqlite-3.7.17-8.el7.x86_64                                49/159 
  Installing : nss-softokn-3.28.3-8.el7_4.x86_64                         50/159 
  Installing : gawk-4.0.2-4.el7_3.1.x86_64                               51/159 
  Installing : 1:findutils-4.5.11-5.el7.x86_64                           52/159 
  Installing : gdbm-1.10-8.el7.x86_64                                    53/159 
  Installing : expat-2.1.0-10.el7_3.x86_64                               54/159 
  Installing : libcap-ng-0.7.5-4.el7.x86_64                              55/159 
  Installing : audit-libs-2.7.6-3.el7.x86_64                             56/159 
  Installing : file-5.11-33.el7.x86_64                                   57/159 
  Installing : cpp-4.8.5-16.el7_4.2.x86_64                               58/159 
  Installing : libassuan-2.1.0-3.el7.x86_64                              59/159 
  Installing : groff-base-1.22.2-8.el7.x86_64                            60/159 
  Installing : 1:perl-parent-0.225-244.el7.noarch                        61/159 
  Installing : perl-HTTP-Tiny-0.033-3.el7.noarch                         62/159 
  Installing : perl-podlators-2.5.1-3.el7.noarch                         63/159 
  Installing : perl-Pod-Perldoc-3.20-4.el7.noarch                        64/159 
  Installing : 1:perl-Pod-Escapes-1.04-292.el7.noarch                    65/159 
  Installing : perl-Text-ParseWords-3.29-4.el7.noarch                    66/159 
  Installing : perl-Encode-2.51-7.el7.x86_64                             67/159 
  Installing : perl-Pod-Usage-1.63-3.el7.noarch                          68/159 
  Installing : 4:perl-libs-5.16.3-292.el7.x86_64                         69/159 
  Installing : 4:perl-macros-5.16.3-292.el7.x86_64                       70/159 
  Installing : perl-Socket-2.010-4.el7.x86_64                            71/159 
  Installing : 4:perl-Time-HiRes-1.9725-3.el7.x86_64                     72/159 
  Installing : perl-threads-1.87-4.el7.x86_64                            73/159 
  Installing : perl-Storable-2.45-3.el7.x86_64                           74/159 
  Installing : perl-Carp-1.26-244.el7.noarch                             75/159 
  Installing : perl-Exporter-5.68-3.el7.noarch                           76/159 
  Installing : perl-Time-Local-1.2300-2.el7.noarch                       77/159 
  Installing : perl-constant-1.27-2.el7.noarch                           78/159 
  Installing : perl-Filter-1.49-3.el7.x86_64                             79/159 
  Installing : perl-threads-shared-1.43-6.el7.x86_64                     80/159 
  Installing : perl-File-Temp-0.23.01-3.el7.noarch                       81/159 
  Installing : perl-File-Path-2.09-2.el7.noarch                          82/159 
  Installing : perl-PathTools-3.40-5.el7.x86_64                          83/159 
  Installing : perl-Scalar-List-Utils-1.27-248.el7.x86_64                84/159 
  Installing : 1:perl-Pod-Simple-3.28-4.el7.noarch                       85/159 
  Installing : perl-Getopt-Long-2.40-2.el7.noarch                        86/159 
  Installing : 4:perl-5.16.3-292.el7.x86_64                              87/159 
  Installing : perl-Thread-Queue-3.02-2.el7.noarch                       88/159 
  Installing : pinentry-0.8.1-17.el7.x86_64                              89/159 
  Installing : 2:tar-1.26-32.el7.x86_64                                  90/159 
  Installing : patch-2.7.1-8.el7.x86_64                                  91/159 
  Installing : dwz-0.11-3.el7.x86_64                                     92/159 
  Installing : cyrus-sasl-lib-2.1.26-21.el7.x86_64                       93/159 
  Installing : libdb-utils-5.3.21-21.el7_4.x86_64                        94/159 
  Installing : libxml2-2.9.1-6.el7_2.3.x86_64                            95/159 
  Installing : xz-5.2.2-1.el7.x86_64                                     96/159 
  Installing : unzip-6.0-16.el7.x86_64                                   97/159 
  Installing : bzip2-1.0.6-13.el7.x86_64                                 98/159 
  Installing : zip-3.0-11.el7.x86_64                                     99/159 
  Installing : libidn-1.28-4.el7.x86_64                                 100/159 
  Installing : cpio-2.11-25.el7_4.x86_64                                101/159 
  Installing : libgomp-4.8.5-16.el7_4.2.x86_64                          102/159 
  Installing : diffutils-3.3-4.el7.x86_64                               103/159 
  Installing : glibc-headers-2.17-196.el7_4.2.x86_64                    104/159 
  Installing : glibc-devel-2.17-196.el7_4.2.x86_64                      105/159 
  Installing : elfutils-default-yama-scope-0.168-8.el7.noarch           106/159 
  Installing : elfutils-libs-0.168-8.el7.x86_64                         107/159 
  Installing : elfutils-0.168-8.el7.x86_64                              108/159 
  Installing : ncurses-5.9-14.20130511.el7_4.x86_64                     109/159 
  Installing : libstdc++-devel-4.8.5-16.el7_4.2.x86_64                  110/159 
  Installing : libverto-0.2.5-4.el7.x86_64                              111/159 
  Installing : ustr-1.0.4-16.el7.x86_64                                 112/159 
  Installing : libsemanage-2.5-8.el7.x86_64                             113/159 
  Installing : libtasn1-4.10-1.el7.x86_64                               114/159 
  Installing : p11-kit-trust-0.23.5-3.el7.x86_64                        115/159 
  Installing : ca-certificates-2017.2.14-71.el7.noarch                  116/159 
  Installing : keyutils-libs-1.5.8-3.el7.x86_64                         117/159 
  Installing : krb5-libs-1.15.1-8.el7.x86_64                            118/159 
  Installing : 1:openssl-libs-1.0.2k-8.el7.x86_64                       119/159 
  Installing : coreutils-8.22-18.el7.x86_64                             120/159 
  Installing : gzip-1.5-9.el7.x86_64                                    121/159 
  Installing : cracklib-2.9.0-11.el7.x86_64                             122/159 
  Installing : cracklib-dicts-2.9.0-11.el7.x86_64                       123/159 
  Installing : libblkid-2.23.2-43.el7_4.2.x86_64                        124/159 
  Installing : libmount-2.23.2-43.el7_4.2.x86_64                        125/159 
  Installing : glib2-2.50.3-3.el7.x86_64                                126/159 
  Installing : shared-mime-info-1.8-3.el7.x86_64                        127/159 
  Installing : binutils-2.25.1-32.base.el7_4.2.x86_64                   128/159 
  Installing : gcc-4.8.5-16.el7_4.2.x86_64                              129/159 
  Installing : 1:pkgconfig-0.27.1-4.el7.x86_64                          130/159 
  Installing : libpwquality-1.2.3-4.el7.x86_64                          131/159 
  Installing : pam-1.1.8-18.el7.x86_64                                  132/159 
  Installing : systemd-libs-219-42.el7_4.10.x86_64                      133/159 
  Installing : 2:shadow-utils-4.1.5.1-24.el7.x86_64                     134/159 
  Installing : libutempter-1.1.6-4.el7.x86_64                           135/159 
  Installing : python-libs-2.7.5-58.el7.x86_64                          136/159 
  Installing : gdb-7.6.1-100.el7_4.1.x86_64                             137/159 
  Installing : nss-pem-1.0.3-4.el7.x86_64                               138/159 
  Installing : nss-3.28.4-15.el7_4.x86_64                               139/159 
  Installing : nss-sysinit-3.28.4-15.el7_4.x86_64                       140/159 
  Installing : nss-tools-3.28.4-15.el7_4.x86_64                         141/159 
  Installing : libssh2-1.4.3-10.el7_2.1.x86_64                          142/159 
  Installing : libcurl-7.29.0-42.el7_4.1.x86_64                         143/159 
  Installing : curl-7.29.0-42.el7_4.1.x86_64                            144/159 
  Installing : rpm-libs-4.11.3-25.el7.x86_64                            145/159 
  Installing : rpm-4.11.3-25.el7.x86_64                                 146/159 
  Installing : openldap-2.4.44-5.el7.x86_64                             147/159 
  Installing : libuser-0.60-7.el7_1.x86_64                              148/159 
  Installing : redhat-rpm-config-9.1.0-76.el7.centos.noarch             149/159 
  Installing : pth-2.0.7-23.el7.x86_64                                  150/159 
  Installing : gnupg2-2.0.22-4.el7.x86_64                               151/159 
  Installing : rpm-build-libs-4.11.3-25.el7.x86_64                      152/159 
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  Installing : util-linux-2.23.2-43.el7_4.2.x86_64                      154/159 
  Installing : gcc-c++-4.8.5-16.el7_4.2.x86_64                          155/159 
  Installing : which-2.20-7.el7.x86_64                                  156/159 
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  Installing : epel-rpm-macros-7-15.noarch                              158/159 
  Installing : epel-release-7-11.noarch                                 159/159 
  Verifying  : perl-HTTP-Tiny-0.033-3.el7.noarch                          1/159 
  Verifying  : rpm-4.11.3-25.el7.x86_64                                   2/159 
  Verifying  : 1:pkgconfig-0.27.1-4.el7.x86_64                            3/159 
  Verifying  : pcre-8.32-17.el7.x86_64                                    4/159 
  Verifying  : elfutils-0.168-8.el7.x86_64                                5/159 
  Verifying  : nss-util-3.28.4-3.el7.x86_64                               6/159 
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  Verifying  : which-2.20-7.el7.x86_64                                    8/159 
  Verifying  : groff-base-1.22.2-8.el7.x86_64                             9/159 
  Verifying  : gdb-7.6.1-100.el7_4.1.x86_64                              10/159 
  Verifying  : perl-File-Temp-0.23.01-3.el7.noarch                       11/159 
  Verifying  : python-srpm-macros-3-18.el7.noarch                        12/159 
  Verifying  : libssh2-1.4.3-10.el7_2.1.x86_64                           13/159 
  Verifying  : file-libs-5.11-33.el7.x86_64                              14/159 
  Verifying  : perl-Time-Local-1.2300-2.el7.noarch                       15/159 
  Verifying  : patch-2.7.1-8.el7.x86_64                                  16/159 
  Verifying  : perl-Socket-2.010-4.el7.x86_64                            17/159 
  Verifying  : elfutils-libs-0.168-8.el7.x86_64                          18/159 
  Verifying  : libstdc++-4.8.5-16.el7_4.2.x86_64                         19/159 
  Verifying  : ca-certificates-2017.2.14-71.el7.noarch                   20/159 
  Verifying  : gcc-4.8.5-16.el7_4.2.x86_64                               21/159 
  Verifying  : libcom_err-1.42.9-10.el7.x86_64                           22/159 
  Verifying  : rpm-build-4.11.3-25.el7.x86_64                            23/159 
  Verifying  : centos-release-7-4.1708.el7.centos.x86_64                 24/159 
  Verifying  : 1:perl-Pod-Escapes-1.04-292.el7.noarch                    25/159 
  Verifying  : tzdata-2018d-1.el7.noarch                                 26/159 
  Verifying  : cyrus-sasl-lib-2.1.26-21.el7.x86_64                       27/159 
  Verifying  : libuser-0.60-7.el7_1.x86_64                               28/159 
  Verifying  : cracklib-dicts-2.9.0-11.el7.x86_64                        29/159 
  Verifying  : libacl-2.2.51-12.el7.x86_64                               30/159 
  Verifying  : glibc-headers-2.17-196.el7_4.2.x86_64                     31/159 
  Verifying  : libffi-3.0.13-18.el7.x86_64                               32/159 
  Verifying  : krb5-libs-1.15.1-8.el7.x86_64                             33/159 
  Verifying  : libassuan-2.1.0-3.el7.x86_64                              34/159 
  Verifying  : readline-6.2-10.el7.x86_64                                35/159 
  Verifying  : perl-Text-ParseWords-3.29-4.el7.noarch                    36/159 
  Verifying  : glibc-2.17-196.el7_4.2.x86_64                             37/159 
  Verifying  : perl-File-Path-2.09-2.el7.noarch                          38/159 
  Verifying  : elfutils-libelf-0.168-8.el7.x86_64                        39/159 
  Verifying  : lua-5.1.4-15.el7.x86_64                                   40/159 
  Verifying  : sqlite-3.7.17-8.el7.x86_64                                41/159 
  Verifying  : libutempter-1.1.6-4.el7.x86_64                            42/159 
  Verifying  : libmount-2.23.2-43.el7_4.2.x86_64                         43/159 
  Verifying  : libidn-1.28-4.el7.x86_64                                  44/159 
  Verifying  : 4:perl-Time-HiRes-1.9725-3.el7.x86_64                     45/159 
  Verifying  : ncurses-libs-5.9-14.20130511.el7_4.x86_64                 46/159 
  Verifying  : unzip-6.0-16.el7.x86_64                                   47/159 
  Verifying  : bzip2-1.0.6-13.el7.x86_64                                 48/159 
  Verifying  : basesystem-10.0-7.el7.centos.noarch                       49/159 
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  Verifying  : libverto-0.2.5-4.el7.x86_64                               53/159 
  Verifying  : 4:perl-libs-5.16.3-292.el7.x86_64                         54/159 
  Verifying  : cpio-2.11-25.el7_4.x86_64                                 55/159 
  Verifying  : shared-mime-info-1.8-3.el7.x86_64                         56/159 
  Verifying  : chkconfig-1.7.4-1.el7.x86_64                              57/159 
  Verifying  : libpwquality-1.2.3-4.el7.x86_64                           58/159 
  Verifying  : curl-7.29.0-42.el7_4.1.x86_64                             59/159 
  Verifying  : bzip2-libs-1.0.6-13.el7.x86_64                            60/159 
  Verifying  : 1:perl-parent-0.225-244.el7.noarch                        61/159 
  Verifying  : ustr-1.0.4-16.el7.x86_64                                  62/159 
  Verifying  : 2:shadow-utils-4.1.5.1-24.el7.x86_64                      63/159 
  Verifying  : libmpc-1.0.1-3.el7.x86_64                                 64/159 
  Verifying  : perl-Pod-Usage-1.63-3.el7.noarch                          65/159 
  Verifying  : 4:perl-5.16.3-292.el7.x86_64                              66/159 
  Verifying  : perl-Encode-2.51-7.el7.x86_64                             67/159 
  Verifying  : libcurl-7.29.0-42.el7_4.1.x86_64                          68/159 
  Verifying  : libtasn1-4.10-1.el7.x86_64                                69/159 
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  Verifying  : gnupg2-2.0.22-4.el7.x86_64                                71/159 
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  Verifying  : libxml2-2.9.1-6.el7_2.3.x86_64                            74/159 
  Verifying  : filesystem-3.2-21.el7.x86_64                              75/159 
  Verifying  : gzip-1.5-9.el7.x86_64                                     76/159 
  Verifying  : nspr-4.13.1-1.0.el7_3.x86_64                              77/159 
  Verifying  : file-5.11-33.el7.x86_64                                   78/159 
  Verifying  : popt-1.13-16.el7.x86_64                                   79/159 
  Verifying  : nss-pem-1.0.3-4.el7.x86_64                                80/159 
  Verifying  : libsepol-2.5-6.el7.x86_64                                 81/159 
  Verifying  : p11-kit-0.23.5-3.el7.x86_64                               82/159 
  Verifying  : perl-threads-shared-1.43-6.el7.x86_64                     83/159 
  Verifying  : perl-Storable-2.45-3.el7.x86_64                           84/159 
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  Verifying  : python-libs-2.7.5-58.el7.x86_64                           86/159 
  Verifying  : coreutils-8.22-18.el7.x86_64                              87/159 
  Verifying  : 4:perl-macros-5.16.3-292.el7.x86_64                       88/159 
  Verifying  : libdb-utils-5.3.21-21.el7_4.x86_64                        89/159 
  Verifying  : gawk-4.0.2-4.el7_3.1.x86_64                               90/159 
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  Verifying  : glibc-devel-2.17-196.el7_4.2.x86_64                       92/159 
  Verifying  : gcc-c++-4.8.5-16.el7_4.2.x86_64                           93/159 
  Verifying  : perl-srpm-macros-1-8.el7.noarch                           94/159 
  Verifying  : 1:openssl-libs-1.0.2k-8.el7.x86_64                        95/159 
  Verifying  : grep-2.20-3.el7.x86_64                                    96/159 
  Verifying  : pam-1.1.8-18.el7.x86_64                                   97/159 
  Verifying  : 2:tar-1.26-32.el7.x86_64                                  98/159 
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  Verifying  : gdbm-1.10-8.el7.x86_64                                   101/159 
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  Verifying  : xz-libs-5.2.2-1.el7.x86_64                               104/159 
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  Verifying  : dwz-0.11-3.el7.x86_64                                    111/159 
  Verifying  : glib2-2.50.3-3.el7.x86_64                                112/159 
  Verifying  : ncurses-5.9-14.20130511.el7_4.x86_64                     113/159 
  Verifying  : ncurses-base-5.9-14.20130511.el7_4.noarch                114/159 
  Verifying  : nss-tools-3.28.4-15.el7_4.x86_64                         115/159 
  Verifying  : expat-2.1.0-10.el7_3.x86_64                              116/159 
  Verifying  : libselinux-2.5-11.el7.x86_64                             117/159 
  Verifying  : nss-sysinit-3.28.4-15.el7_4.x86_64                       118/159 
  Verifying  : perl-Exporter-5.68-3.el7.noarch                          119/159 
  Verifying  : perl-constant-1.27-2.el7.noarch                          120/159 
  Verifying  : perl-PathTools-3.40-5.el7.x86_64                         121/159 
  Verifying  : keyutils-libs-1.5.8-3.el7.x86_64                         122/159 
  Verifying  : pinentry-0.8.1-17.el7.x86_64                             123/159 
  Verifying  : cpp-4.8.5-16.el7_4.2.x86_64                              124/159 
  Verifying  : libblkid-2.23.2-43.el7_4.2.x86_64                        125/159 
  Verifying  : perl-Filter-1.49-3.el7.x86_64                            126/159 
  Verifying  : pth-2.0.7-23.el7.x86_64                                  127/159 
  Verifying  : setup-2.8.71-7.el7.noarch                                128/159 
  Verifying  : nss-softokn-3.28.3-8.el7_4.x86_64                        129/159 
  Verifying  : perl-Thread-Queue-3.02-2.el7.noarch                      130/159 
  Verifying  : 1:perl-Pod-Simple-3.28-4.el7.noarch                      131/159 
  Verifying  : libattr-2.4.46-12.el7.x86_64                             132/159 
  Verifying  : python2-rpm-macros-3-18.el7.noarch                       133/159 
  Verifying  : zlib-1.2.7-17.el7.x86_64                                 134/159 
  Verifying  : perl-Pod-Perldoc-3.20-4.el7.noarch                       135/159 
  Verifying  : systemd-libs-219-42.el7_4.10.x86_64                      136/159 
  Verifying  : libcap-2.22-9.el7.x86_64                                 137/159 
  Verifying  : xz-5.2.2-1.el7.x86_64                                    138/159 
  Verifying  : libcap-ng-0.7.5-4.el7.x86_64                             139/159 
  Verifying  : 1:gmp-6.0.0-15.el7.x86_64                                140/159 
  Verifying  : perl-Scalar-List-Utils-1.27-248.el7.x86_64               141/159 
  Verifying  : p11-kit-trust-0.23.5-3.el7.x86_64                        142/159 
  Verifying  : libsemanage-2.5-8.el7.x86_64                             143/159 
  Verifying  : info-5.1-4.el7.x86_64                                    144/159 
  Verifying  : libgomp-4.8.5-16.el7_4.2.x86_64                          145/159 
  Verifying  : libgcrypt-1.5.3-14.el7.x86_64                            146/159 
  Verifying  : bash-4.2.46-29.el7_4.x86_64                              147/159 
  Verifying  : sed-4.2.2-5.el7.x86_64                                   148/159 
  Verifying  : rpm-build-libs-4.11.3-25.el7.x86_64                      149/159 
  Verifying  : perl-Getopt-Long-2.40-2.el7.noarch                       150/159 
  Verifying  : zip-3.0-11.el7.x86_64                                    151/159 
  Verifying  : binutils-2.25.1-32.base.el7_4.2.x86_64                   152/159 
  Verifying  : kernel-headers-3.10.0-693.21.1.el7.x86_64                153/159 
  Verifying  : nss-3.28.4-15.el7_4.x86_64                               154/159 
  Verifying  : glibc-common-2.17-196.el7_4.2.x86_64                     155/159 
  Verifying  : 1:make-3.82-23.el7.x86_64                                156/159 
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  Verifying  : diffutils-3.3-4.el7.x86_64                               158/159 
  Verifying  : libuuid-2.23.2-43.el7_4.2.x86_64                         159/159 

Installed:
  bash.x86_64 0:4.2.46-29.el7_4                                                 
  bzip2.x86_64 0:1.0.6-13.el7                                                   
  coreutils.x86_64 0:8.22-18.el7                                                
  cpio.x86_64 0:2.11-25.el7_4                                                   
  diffutils.x86_64 0:3.3-4.el7                                                  
  epel-release.noarch 0:7-11                                                    
  epel-rpm-macros.noarch 0:7-15                                                 
  findutils.x86_64 1:4.5.11-5.el7                                               
  gawk.x86_64 0:4.0.2-4.el7_3.1                                                 
  gcc.x86_64 0:4.8.5-16.el7_4.2                                                 
  gcc-c++.x86_64 0:4.8.5-16.el7_4.2                                             
  grep.x86_64 0:2.20-3.el7                                                      
  gzip.x86_64 0:1.5-9.el7                                                       
  info.x86_64 0:5.1-4.el7                                                       
  make.x86_64 1:3.82-23.el7                                                     
  patch.x86_64 0:2.7.1-8.el7                                                    
  redhat-rpm-config.noarch 0:9.1.0-76.el7.centos                                
  rpm-build.x86_64 0:4.11.3-25.el7                                              
  sed.x86_64 0:4.2.2-5.el7                                                      
  shadow-utils.x86_64 2:4.1.5.1-24.el7                                          
  tar.x86_64 2:1.26-32.el7                                                      
  unzip.x86_64 0:6.0-16.el7                                                     
  util-linux.x86_64 0:2.23.2-43.el7_4.2                                         
  which.x86_64 0:2.20-7.el7                                                     
  xz.x86_64 0:5.2.2-1.el7                                                       

Dependency Installed:
  audit-libs.x86_64 0:2.7.6-3.el7                                               
  basesystem.noarch 0:10.0-7.el7.centos                                         
  binutils.x86_64 0:2.25.1-32.base.el7_4.2                                      
  bzip2-libs.x86_64 0:1.0.6-13.el7                                              
  ca-certificates.noarch 0:2017.2.14-71.el7                                     
  centos-release.x86_64 0:7-4.1708.el7.centos                                   
  chkconfig.x86_64 0:1.7.4-1.el7                                                
  cpp.x86_64 0:4.8.5-16.el7_4.2                                                 
  cracklib.x86_64 0:2.9.0-11.el7                                                
  cracklib-dicts.x86_64 0:2.9.0-11.el7                                          
  curl.x86_64 0:7.29.0-42.el7_4.1                                               
  cyrus-sasl-lib.x86_64 0:2.1.26-21.el7                                         
  dwz.x86_64 0:0.11-3.el7                                                       
  elfutils.x86_64 0:0.168-8.el7                                                 
  elfutils-default-yama-scope.noarch 0:0.168-8.el7                              
  elfutils-libelf.x86_64 0:0.168-8.el7                                          
  elfutils-libs.x86_64 0:0.168-8.el7                                            
  expat.x86_64 0:2.1.0-10.el7_3                                                 
  file.x86_64 0:5.11-33.el7                                                     
  file-libs.x86_64 0:5.11-33.el7                                                
  filesystem.x86_64 0:3.2-21.el7                                                
  gdb.x86_64 0:7.6.1-100.el7_4.1                                                
  gdbm.x86_64 0:1.10-8.el7                                                      
  glib2.x86_64 0:2.50.3-3.el7                                                   
  glibc.x86_64 0:2.17-196.el7_4.2                                               
  glibc-common.x86_64 0:2.17-196.el7_4.2                                        
  glibc-devel.x86_64 0:2.17-196.el7_4.2                                         
  glibc-headers.x86_64 0:2.17-196.el7_4.2                                       
  gmp.x86_64 1:6.0.0-15.el7                                                     
  gnupg2.x86_64 0:2.0.22-4.el7                                                  
  groff-base.x86_64 0:1.22.2-8.el7                                              
  kernel-headers.x86_64 0:3.10.0-693.21.1.el7                                   
  keyutils-libs.x86_64 0:1.5.8-3.el7                                            
  krb5-libs.x86_64 0:1.15.1-8.el7                                               
  libacl.x86_64 0:2.2.51-12.el7                                                 
  libassuan.x86_64 0:2.1.0-3.el7                                                
  libattr.x86_64 0:2.4.46-12.el7                                                
  libblkid.x86_64 0:2.23.2-43.el7_4.2                                           
  libcap.x86_64 0:2.22-9.el7                                                    
  libcap-ng.x86_64 0:0.7.5-4.el7                                                
  libcom_err.x86_64 0:1.42.9-10.el7                                             
  libcurl.x86_64 0:7.29.0-42.el7_4.1                                            
  libdb.x86_64 0:5.3.21-21.el7_4                                                
  libdb-utils.x86_64 0:5.3.21-21.el7_4                                          
  libffi.x86_64 0:3.0.13-18.el7                                                 
  libgcc.x86_64 0:4.8.5-16.el7_4.2                                              
  libgcrypt.x86_64 0:1.5.3-14.el7                                               
  libgomp.x86_64 0:4.8.5-16.el7_4.2                                             
  libgpg-error.x86_64 0:1.12-3.el7                                              
  libidn.x86_64 0:1.28-4.el7                                                    
  libmount.x86_64 0:2.23.2-43.el7_4.2                                           
  libmpc.x86_64 0:1.0.1-3.el7                                                   
  libpwquality.x86_64 0:1.2.3-4.el7                                             
  libselinux.x86_64 0:2.5-11.el7                                                
  libsemanage.x86_64 0:2.5-8.el7                                                
  libsepol.x86_64 0:2.5-6.el7                                                   
  libssh2.x86_64 0:1.4.3-10.el7_2.1                                             
  libstdc++.x86_64 0:4.8.5-16.el7_4.2                                           
  libstdc++-devel.x86_64 0:4.8.5-16.el7_4.2                                     
  libtasn1.x86_64 0:4.10-1.el7                                                  
  libuser.x86_64 0:0.60-7.el7_1                                                 
  libutempter.x86_64 0:1.1.6-4.el7                                              
  libuuid.x86_64 0:2.23.2-43.el7_4.2                                            
  libverto.x86_64 0:0.2.5-4.el7                                                 
  libxml2.x86_64 0:2.9.1-6.el7_2.3                                              
  lua.x86_64 0:5.1.4-15.el7                                                     
  mpfr.x86_64 0:3.1.1-4.el7                                                     
  ncurses.x86_64 0:5.9-14.20130511.el7_4                                        
  ncurses-base.noarch 0:5.9-14.20130511.el7_4                                   
  ncurses-libs.x86_64 0:5.9-14.20130511.el7_4                                   
  nspr.x86_64 0:4.13.1-1.0.el7_3                                                
  nss.x86_64 0:3.28.4-15.el7_4                                                  
  nss-pem.x86_64 0:1.0.3-4.el7                                                  
  nss-softokn.x86_64 0:3.28.3-8.el7_4                                           
  nss-softokn-freebl.x86_64 0:3.28.3-8.el7_4                                    
  nss-sysinit.x86_64 0:3.28.4-15.el7_4                                          
  nss-tools.x86_64 0:3.28.4-15.el7_4                                            
  nss-util.x86_64 0:3.28.4-3.el7                                                
  openldap.x86_64 0:2.4.44-5.el7                                                
  openssl-libs.x86_64 1:1.0.2k-8.el7                                            
  p11-kit.x86_64 0:0.23.5-3.el7                                                 
  p11-kit-trust.x86_64 0:0.23.5-3.el7                                           
  pam.x86_64 0:1.1.8-18.el7                                                     
  pcre.x86_64 0:8.32-17.el7                                                     
  perl.x86_64 4:5.16.3-292.el7                                                  
  perl-Carp.noarch 0:1.26-244.el7                                               
  perl-Encode.x86_64 0:2.51-7.el7                                               
  perl-Exporter.noarch 0:5.68-3.el7                                             
  perl-File-Path.noarch 0:2.09-2.el7                                            
  perl-File-Temp.noarch 0:0.23.01-3.el7                                         
  perl-Filter.x86_64 0:1.49-3.el7                                               
  perl-Getopt-Long.noarch 0:2.40-2.el7                                          
  perl-HTTP-Tiny.noarch 0:0.033-3.el7                                           
  perl-PathTools.x86_64 0:3.40-5.el7                                            
  perl-Pod-Escapes.noarch 1:1.04-292.el7                                        
  perl-Pod-Perldoc.noarch 0:3.20-4.el7                                          
  perl-Pod-Simple.noarch 1:3.28-4.el7                                           
  perl-Pod-Usage.noarch 0:1.63-3.el7                                            
  perl-Scalar-List-Utils.x86_64 0:1.27-248.el7                                  
  perl-Socket.x86_64 0:2.010-4.el7                                              
  perl-Storable.x86_64 0:2.45-3.el7                                             
  perl-Text-ParseWords.noarch 0:3.29-4.el7                                      
  perl-Thread-Queue.noarch 0:3.02-2.el7                                         
  perl-Time-HiRes.x86_64 4:1.9725-3.el7                                         
  perl-Time-Local.noarch 0:1.2300-2.el7                                         
  perl-constant.noarch 0:1.27-2.el7                                             
  perl-libs.x86_64 4:5.16.3-292.el7                                             
  perl-macros.x86_64 4:5.16.3-292.el7                                           
  perl-parent.noarch 1:0.225-244.el7                                            
  perl-podlators.noarch 0:2.5.1-3.el7                                           
  perl-srpm-macros.noarch 0:1-8.el7                                             
  perl-threads.x86_64 0:1.87-4.el7                                              
  perl-threads-shared.x86_64 0:1.43-6.el7                                       
  pinentry.x86_64 0:0.8.1-17.el7                                                
  pkgconfig.x86_64 1:0.27.1-4.el7                                               
  popt.x86_64 0:1.13-16.el7                                                     
  pth.x86_64 0:2.0.7-23.el7                                                     
  python-libs.x86_64 0:2.7.5-58.el7                                             
  python-rpm-macros.noarch 0:3-18.el7                                           
  python-srpm-macros.noarch 0:3-18.el7                                          
  python2-rpm-macros.noarch 0:3-18.el7                                          
  readline.x86_64 0:6.2-10.el7                                                  
  rpm.x86_64 0:4.11.3-25.el7                                                    
  rpm-build-libs.x86_64 0:4.11.3-25.el7                                         
  rpm-libs.x86_64 0:4.11.3-25.el7                                               
  setup.noarch 0:2.8.71-7.el7                                                   
  shared-mime-info.x86_64 0:1.8-3.el7                                           
  sqlite.x86_64 0:3.7.17-8.el7                                                  
  systemd-libs.x86_64 0:219-42.el7_4.10                                         
  tzdata.noarch 0:2018d-1.el7                                                   
  ustr.x86_64 0:1.0.4-16.el7                                                    
  xz-libs.x86_64 0:5.2.2-1.el7                                                  
  zip.x86_64 0:3.0-11.el7                                                       
  zlib.x86_64 0:1.2.7-17.el7                                                    

Complete!
Finish: yum install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
Start: buildsrpm
Start: rpmbuild -bs
sh: /usr/bin/python2: No such file or directory
sh: /usr/bin/python2: No such file or directory
warning: Could not canonicalize hostname: a43564709aa8442f94e9ee974b707a10
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/rdkit-2017.09.3-2.el7.centos.src.rpm
Finish: rpmbuild -bs
Finish: buildsrpm
INFO: Done(/tmp/tmpb51pq77r/rdkit.spec) Config(child) 2 minutes 13 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running: unbuffer /usr/bin/mock --rebuild /var/lib/copr-rpmbuild/results/rdkit-2017.09.3-2.el7.centos.src.rpm --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1522751293.189527 -r child
WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default...
INFO: mock.py version 1.4.9 starting (python version = 3.6.3)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux disabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux disabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/rdkit-2017.09.3-2.el7.centos.src.rpm)  Config(736198-epel-7-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/736198-epel-7-x86_64-bootstrap-1522751293.189527/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start(bootstrap): unpacking root cache
Finish(bootstrap): unpacking root cache
INFO: enabled HW Info plugin
Mock Version: 1.4.9
INFO: Mock Version: 1.4.9
Start(bootstrap): yum update
Yum command has been deprecated, use dnf instead.
See 'man dnf' and 'man yum2dnf' for more information.

copr_base                                                   | 3.0 kB  00:00     
base                                                        | 3.6 kB  00:00     
epel                                                        | 4.7 kB  00:00     
extras                                                      | 3.4 kB  00:00     
sclo                                                        | 2.9 kB  00:00     
sclo-rh                                                     | 3.0 kB  00:00     
updates                                                     | 3.4 kB  00:00     
(1/7): copr_base/primary_db                                 |  10 kB  00:00     
(2/7): sclo/primary_db                                      | 202 kB  00:00     
(3/7): epel/primary_db                                      | 6.3 MB  00:00     
(4/7): sclo-rh/primary_db                                   | 3.2 MB  00:00     
(5/7): extras/primary_db                                    | 185 kB  00:00     
(6/7): base/primary_db                                      | 5.7 MB  00:00     
(7/7): updates/primary_db                                   | 6.9 MB  00:01     
No packages marked for update
Finish(bootstrap): yum update
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/736198-epel-7-x86_64-1522751293.189527/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled HW Info plugin
Mock Version: 1.4.9
INFO: Mock Version: 1.4.9
Start: yum update
Failed to set locale, defaulting to C
copr_base                                                | 3.0 kB     00:00     
base                                                     | 3.6 kB     00:00     
epel                                                     | 4.7 kB     00:00     
extras                                                   | 3.4 kB     00:00     
sclo                                                     | 2.9 kB     00:00     
sclo-rh                                                  | 3.0 kB     00:00     
updates                                                  | 3.4 kB     00:00     
base/group_gz                                            | 156 kB     00:00     
epel/group_gz                                            | 266 kB     00:00     
No packages marked for update
Finish: yum update
Finish: chroot init
Start: build phase for rdkit-2017.09.3-2.el7.centos.src.rpm
Start: build setup for rdkit-2017.09.3-2.el7.centos.src.rpm
sh: /usr/bin/python2: No such file or directory
sh: /usr/bin/python2: No such file or directory
warning: Could not canonicalize hostname: be7a202cc3494b6f9452d6667c12e339
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/rdkit-2017.09.3-2.el7.centos.src.rpm
Failed to set locale, defaulting to C
copr_base                                                | 3.0 kB     00:00     
Getting requirements for rdkit-2017.09.3-2.el7.centos.src
 --> cmake-2.8.12.2-2.el7.x86_64
 --> flex-2.5.37-3.el7.x86_64
 --> bison-3.0.4-1.el7.x86_64
 --> python-devel-2.7.5-58.el7.x86_64
 --> boost-devel-1.53.0-27.el7.x86_64
 --> postgresql-devel-9.2.23-3.el7_4.x86_64
 --> postgresql-9.2.23-3.el7_4.x86_64
 --> 1:numpy-1.7.1-11.el7.x86_64
 --> inchi-devel-1.0.4-4.el7.x86_64
 --> cairo-devel-1.14.8-2.el7.x86_64
 --> eigen3-devel-3.2.5-2.el7.noarch
 --> chrpath-0.16-0.el7.x86_64
 --> swig-2.0.10-5.el7.x86_64
 --> 1:java-1.8.0-openjdk-devel-1.8.0.161-0.b14.el7_4.x86_64
 --> junit-4.11-8.el7.noarch
 --> pycairo-1.8.10-8.el7.x86_64
 --> xorg-x11-fonts-Type1-7.5-9.el7.noarch
 --> python-pandas-0.17.1-1.el7.x86_64
 --> python-pillow-2.0.0-19.gitd1c6db8.el7.x86_64
--> Running transaction check
---> Package bison.x86_64 0:3.0.4-1.el7 will be installed
--> Processing Dependency: m4 >= 1.4 for package: bison-3.0.4-1.el7.x86_64
---> Package boost-devel.x86_64 0:1.53.0-27.el7 will be installed
--> Processing Dependency: boost(x86-64) = 1.53.0-27.el7 for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_wserialization.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_wserialization-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_wave.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_wave-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_unit_test_framework.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_unit_test_framework-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_timer.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_timer-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_system.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_system-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_signals.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_signals-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_serialization.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_serialization-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_regex.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_regex-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_random.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_random-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_python.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_python-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_program_options.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_program_options-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_prg_exec_monitor.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_prg_exec_monitor-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_tr1l.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_tr1l-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_tr1f.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_tr1f-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_tr1.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_tr1-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_c99l.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_c99l-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_c99f.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_c99f-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_c99.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_math_c99-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_locale-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_iostreams.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_iostreams-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_graph.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_graph-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_filesystem.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_filesystem-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_date_time.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_date_time-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_context.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_context-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_chrono.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_chrono-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
--> Processing Dependency: libboost_atomic-mt.so.1.53.0()(64bit) for package: boost-devel-1.53.0-27.el7.x86_64
---> Package cairo-devel.x86_64 0:1.14.8-2.el7 will be installed
--> Processing Dependency: cairo(x86-64) = 1.14.8-2.el7 for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(xrender) >= 0.6 for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(xcb-render) >= 1.6 for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(xcb) >= 1.6 for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(pixman-1) >= 0.30.0 for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(glib-2.0) >= 2.14 for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(freetype2) >= 9.7.3 for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(fontconfig) >= 2.2.95 for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(xext) for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(xcb-shm) for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(x11) for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(libpng) for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(gobject-2.0) for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(gl) for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: pkgconfig(egl) for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: libcairo.so.2()(64bit) for package: cairo-devel-1.14.8-2.el7.x86_64
--> Processing Dependency: libcairo-script-interpreter.so.2()(64bit) for package: cairo-devel-1.14.8-2.el7.x86_64
---> Package chrpath.x86_64 0:0.16-0.el7 will be installed
---> Package cmake.x86_64 0:2.8.12.2-2.el7 will be installed
--> Processing Dependency: libarchive.so.13()(64bit) for package: cmake-2.8.12.2-2.el7.x86_64
---> Package eigen3-devel.noarch 0:3.2.5-2.el7 will be installed
---> Package flex.x86_64 0:2.5.37-3.el7 will be installed
---> Package inchi-devel.x86_64 0:1.0.4-4.el7 will be installed
--> Processing Dependency: inchi = 1.0.4-4.el7 for package: inchi-devel-1.0.4-4.el7.x86_64
--> Processing Dependency: libinchi.so.1()(64bit) for package: inchi-devel-1.0.4-4.el7.x86_64
---> Package java-1.8.0-openjdk-devel.x86_64 1:1.8.0.161-0.b14.el7_4 will be installed
--> Processing Dependency: java-1.8.0-openjdk(x86-64) = 1:1.8.0.161-0.b14.el7_4 for package: 1:java-1.8.0-openjdk-devel-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libawt_xawt.so(SUNWprivate_1.1)(64bit) for package: 1:java-1.8.0-openjdk-devel-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libjvm.so()(64bit) for package: 1:java-1.8.0-openjdk-devel-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libjava.so()(64bit) for package: 1:java-1.8.0-openjdk-devel-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libawt_xawt.so()(64bit) for package: 1:java-1.8.0-openjdk-devel-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libawt.so()(64bit) for package: 1:java-1.8.0-openjdk-devel-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libX11.so.6()(64bit) for package: 1:java-1.8.0-openjdk-devel-1.8.0.161-0.b14.el7_4.x86_64
---> Package junit.noarch 0:4.11-8.el7 will be installed
--> Processing Dependency: osgi(org.hamcrest.core) for package: junit-4.11-8.el7.noarch
--> Processing Dependency: jpackage-utils for package: junit-4.11-8.el7.noarch
--> Processing Dependency: hamcrest for package: junit-4.11-8.el7.noarch
---> Package numpy.x86_64 1:1.7.1-11.el7 will be installed
--> Processing Dependency: python(abi) = 2.7 for package: 1:numpy-1.7.1-11.el7.x86_64
--> Processing Dependency: python-nose for package: 1:numpy-1.7.1-11.el7.x86_64
--> Processing Dependency: libtatlas.so.3()(64bit) for package: 1:numpy-1.7.1-11.el7.x86_64
--> Processing Dependency: libquadmath.so.0()(64bit) for package: 1:numpy-1.7.1-11.el7.x86_64
--> Processing Dependency: liblapack.so.3()(64bit) for package: 1:numpy-1.7.1-11.el7.x86_64
--> Processing Dependency: libgfortran.so.3()(64bit) for package: 1:numpy-1.7.1-11.el7.x86_64
---> Package postgresql.x86_64 0:9.2.23-3.el7_4 will be installed
--> Processing Dependency: postgresql-libs(x86-64) = 9.2.23-3.el7_4 for package: postgresql-9.2.23-3.el7_4.x86_64
--> Processing Dependency: libpq.so.5()(64bit) for package: postgresql-9.2.23-3.el7_4.x86_64
---> Package postgresql-devel.x86_64 0:9.2.23-3.el7_4 will be installed
---> Package pycairo.x86_64 0:1.8.10-8.el7 will be installed
---> Package python-devel.x86_64 0:2.7.5-58.el7 will be installed
---> Package python-pandas.x86_64 0:0.17.1-1.el7 will be installed
--> Processing Dependency: python-Bottleneck for package: python-pandas-0.17.1-1.el7.x86_64
--> Processing Dependency: python-dateutil for package: python-pandas-0.17.1-1.el7.x86_64
--> Processing Dependency: python-matplotlib for package: python-pandas-0.17.1-1.el7.x86_64
--> Processing Dependency: python-numexpr for package: python-pandas-0.17.1-1.el7.x86_64
--> Processing Dependency: python-tables for package: python-pandas-0.17.1-1.el7.x86_64
--> Processing Dependency: pytz for package: python-pandas-0.17.1-1.el7.x86_64
--> Processing Dependency: scipy for package: python-pandas-0.17.1-1.el7.x86_64
---> Package python-pillow.x86_64 0:2.0.0-19.gitd1c6db8.el7 will be installed
--> Processing Dependency: libtiff.so.5(LIBTIFF_4.0)(64bit) for package: python-pillow-2.0.0-19.gitd1c6db8.el7.x86_64
--> Processing Dependency: libjpeg.so.62(LIBJPEG_6.2)(64bit) for package: python-pillow-2.0.0-19.gitd1c6db8.el7.x86_64
--> Processing Dependency: libwebp.so.4()(64bit) for package: python-pillow-2.0.0-19.gitd1c6db8.el7.x86_64
--> Processing Dependency: libtiff.so.5()(64bit) for package: python-pillow-2.0.0-19.gitd1c6db8.el7.x86_64
--> Processing Dependency: libjpeg.so.62()(64bit) for package: python-pillow-2.0.0-19.gitd1c6db8.el7.x86_64
--> Processing Dependency: libfreetype.so.6()(64bit) for package: python-pillow-2.0.0-19.gitd1c6db8.el7.x86_64
---> Package swig.x86_64 0:2.0.10-5.el7 will be installed
---> Package xorg-x11-fonts-Type1.noarch 0:7.5-9.el7 will be installed
--> Processing Dependency: ttmkfdir for package: xorg-x11-fonts-Type1-7.5-9.el7.noarch
--> Processing Dependency: ttmkfdir for package: xorg-x11-fonts-Type1-7.5-9.el7.noarch
--> Processing Dependency: mkfontdir for package: xorg-x11-fonts-Type1-7.5-9.el7.noarch
--> Processing Dependency: mkfontdir for package: xorg-x11-fonts-Type1-7.5-9.el7.noarch
--> Processing Dependency: fontconfig for package: xorg-x11-fonts-Type1-7.5-9.el7.noarch
--> Processing Dependency: fontconfig for package: xorg-x11-fonts-Type1-7.5-9.el7.noarch
--> Running transaction check
---> Package atlas.x86_64 0:3.10.1-12.el7 will be installed
---> Package boost.x86_64 0:1.53.0-27.el7 will be installed
--> Processing Dependency: boost-thread(x86-64) = 1.53.0-27.el7 for package: boost-1.53.0-27.el7.x86_64
---> Package boost-atomic.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-chrono.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-context.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-date-time.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-filesystem.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-graph.x86_64 0:1.53.0-27.el7 will be installed
--> Processing Dependency: libicuuc.so.50()(64bit) for package: boost-graph-1.53.0-27.el7.x86_64
--> Processing Dependency: libicui18n.so.50()(64bit) for package: boost-graph-1.53.0-27.el7.x86_64
--> Processing Dependency: libicudata.so.50()(64bit) for package: boost-graph-1.53.0-27.el7.x86_64
---> Package boost-iostreams.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-locale.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-math.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-program-options.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-python.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-random.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-regex.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-serialization.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-signals.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-system.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-test.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-timer.x86_64 0:1.53.0-27.el7 will be installed
---> Package boost-wave.x86_64 0:1.53.0-27.el7 will be installed
---> Package cairo.x86_64 0:1.14.8-2.el7 will be installed
--> Processing Dependency: libpng15.so.15(PNG15_0)(64bit) for package: cairo-1.14.8-2.el7.x86_64
--> Processing Dependency: libxcb.so.1()(64bit) for package: cairo-1.14.8-2.el7.x86_64
--> Processing Dependency: libxcb-shm.so.0()(64bit) for package: cairo-1.14.8-2.el7.x86_64
--> Processing Dependency: libxcb-render.so.0()(64bit) for package: cairo-1.14.8-2.el7.x86_64
--> Processing Dependency: libpng15.so.15()(64bit) for package: cairo-1.14.8-2.el7.x86_64
--> Processing Dependency: libpixman-1.so.0()(64bit) for package: cairo-1.14.8-2.el7.x86_64
--> Processing Dependency: libXrender.so.1()(64bit) for package: cairo-1.14.8-2.el7.x86_64
--> Processing Dependency: libXext.so.6()(64bit) for package: cairo-1.14.8-2.el7.x86_64
--> Processing Dependency: libGL.so.1()(64bit) for package: cairo-1.14.8-2.el7.x86_64
--> Processing Dependency: libEGL.so.1()(64bit) for package: cairo-1.14.8-2.el7.x86_64
---> Package fontconfig.x86_64 0:2.10.95-11.el7 will be installed
--> Processing Dependency: fontpackages-filesystem for package: fontconfig-2.10.95-11.el7.x86_64
--> Processing Dependency: font(:lang=en) for package: fontconfig-2.10.95-11.el7.x86_64
---> Package fontconfig-devel.x86_64 0:2.10.95-11.el7 will be installed
--> Processing Dependency: pkgconfig(expat) for package: fontconfig-devel-2.10.95-11.el7.x86_64
---> Package freetype.x86_64 0:2.4.11-15.el7 will be installed
---> Package freetype-devel.x86_64 0:2.4.11-15.el7 will be installed
--> Processing Dependency: zlib-devel for package: freetype-devel-2.4.11-15.el7.x86_64
---> Package glib2-devel.x86_64 0:2.50.3-3.el7 will be installed
--> Processing Dependency: pkgconfig(libpcre) for package: glib2-devel-2.50.3-3.el7.x86_64
---> Package hamcrest.noarch 0:1.3-6.el7 will be installed
--> Processing Dependency: qdox for package: hamcrest-1.3-6.el7.noarch
--> Processing Dependency: easymock2 for package: hamcrest-1.3-6.el7.noarch
---> Package inchi.x86_64 0:1.0.4-4.el7 will be installed
---> Package java-1.8.0-openjdk.x86_64 1:1.8.0.161-0.b14.el7_4 will be installed
--> Processing Dependency: libasound.so.2(ALSA_0.9.0rc4)(64bit) for package: 1:java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libasound.so.2(ALSA_0.9)(64bit) for package: 1:java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libgif.so.4()(64bit) for package: 1:java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libasound.so.2()(64bit) for package: 1:java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libXtst.so.6()(64bit) for package: 1:java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libXi.so.6()(64bit) for package: 1:java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: libXcomposite.so.1()(64bit) for package: 1:java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64
---> Package java-1.8.0-openjdk-headless.x86_64 1:1.8.0.161-0.b14.el7_4 will be installed
--> Processing Dependency: tzdata-java >= 2015d for package: 1:java-1.8.0-openjdk-headless-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: copy-jdk-configs >= 2.2 for package: 1:java-1.8.0-openjdk-headless-1.8.0.161-0.b14.el7_4.x86_64
--> Processing Dependency: lksctp-tools(x86-64) for package: 1:java-1.8.0-openjdk-headless-1.8.0.161-0.b14.el7_4.x86_64
---> Package javapackages-tools.noarch 0:3.4.1-11.el7 will be installed
--> Processing Dependency: python-javapackages = 3.4.1-11.el7 for package: javapackages-tools-3.4.1-11.el7.noarch
--> Processing Dependency: libxslt for package: javapackages-tools-3.4.1-11.el7.noarch
---> Package lapack.x86_64 0:3.4.2-8.el7 will be installed
--> Processing Dependency: libblas.so.3()(64bit) for package: lapack-3.4.2-8.el7.x86_64
---> Package libX11.x86_64 0:1.6.5-1.el7 will be installed
--> Processing Dependency: libX11-common >= 1.6.5-1.el7 for package: libX11-1.6.5-1.el7.x86_64
---> Package libX11-devel.x86_64 0:1.6.5-1.el7 will be installed
--> Processing Dependency: pkgconfig(xproto) for package: libX11-devel-1.6.5-1.el7.x86_64
--> Processing Dependency: pkgconfig(kbproto) for package: libX11-devel-1.6.5-1.el7.x86_64
---> Package libXext-devel.x86_64 0:1.3.3-3.el7 will be installed
---> Package libXrender-devel.x86_64 0:0.9.10-1.el7 will be installed
---> Package libarchive.x86_64 0:3.1.2-10.el7_2 will be installed
--> Processing Dependency: liblzo2.so.2()(64bit) for package: libarchive-3.1.2-10.el7_2.x86_64
---> Package libgfortran.x86_64 0:4.8.5-16.el7_4.2 will be installed
---> Package libjpeg-turbo.x86_64 0:1.2.90-5.el7 will be installed
---> Package libpng-devel.x86_64 2:1.5.13-7.el7_2 will be installed
---> Package libquadmath.x86_64 0:4.8.5-16.el7_4.2 will be installed
---> Package libtiff.x86_64 0:4.0.3-27.el7_3 will be installed
--> Processing Dependency: libjbig.so.2.0()(64bit) for package: libtiff-4.0.3-27.el7_3.x86_64
---> Package libwebp.x86_64 0:0.3.0-7.el7 will be installed
---> Package libxcb-devel.x86_64 0:1.12-1.el7 will be installed
--> Processing Dependency: pkgconfig(xau) >= 0.99.2 for package: libxcb-devel-1.12-1.el7.x86_64
---> Package m4.x86_64 0:1.4.16-10.el7 will be installed
---> Package mesa-libEGL-devel.x86_64 0:17.0.1-6.20170307.el7 will be installed
--> Processing Dependency: pkgconfig(libdrm) >= 2.4.66 for package: mesa-libEGL-devel-17.0.1-6.20170307.el7.x86_64
--> Processing Dependency: pkgconfig(xxf86vm) for package: mesa-libEGL-devel-17.0.1-6.20170307.el7.x86_64
--> Processing Dependency: pkgconfig(xfixes) for package: mesa-libEGL-devel-17.0.1-6.20170307.el7.x86_64
--> Processing Dependency: pkgconfig(xdamage) for package: mesa-libEGL-devel-17.0.1-6.20170307.el7.x86_64
---> Package mesa-libGL-devel.x86_64 0:17.0.1-6.20170307.el7 will be installed
--> Processing Dependency: gl-manpages for package: mesa-libGL-devel-17.0.1-6.20170307.el7.x86_64
--> Processing Dependency: libglapi.so.0()(64bit) for package: mesa-libGL-devel-17.0.1-6.20170307.el7.x86_64
---> Package pixman-devel.x86_64 0:0.34.0-1.el7 will be installed
---> Package postgresql-libs.x86_64 0:9.2.23-3.el7_4 will be installed
---> Package python.x86_64 0:2.7.5-58.el7 will be installed
---> Package python-Bottleneck.x86_64 0:0.7.0-1.el7 will be installed
---> Package python-dateutil.noarch 0:1.5-7.el7 will be installed
---> Package python-matplotlib.x86_64 0:1.2.0-15.el7 will be installed
--> Processing Dependency: stix-fonts for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: pyparsing for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: pygtk2 for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: dvipng for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: dejavu-sans-fonts for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: libpangoft2-1.0.so.0()(64bit) for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: libpangocairo-1.0.so.0()(64bit) for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: libpango-1.0.so.0()(64bit) for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: libgtk-x11-2.0.so.0()(64bit) for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: libgdk_pixbuf-2.0.so.0()(64bit) for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: libgdk-x11-2.0.so.0()(64bit) for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: libatk-1.0.so.0()(64bit) for package: python-matplotlib-1.2.0-15.el7.x86_64
--> Processing Dependency: libagg.so.2()(64bit) for package: python-matplotlib-1.2.0-15.el7.x86_64
---> Package python-nose.noarch 0:1.3.7-1.el7 will be installed
--> Processing Dependency: python-setuptools for package: python-nose-1.3.7-1.el7.noarch
---> Package python-tables.x86_64 0:3.2.0-1.el7 will be installed
--> Processing Dependency: libblosc.so.1()(64bit) for package: python-tables-3.2.0-1.el7.x86_64
--> Processing Dependency: libhdf5.so.8()(64bit) for package: python-tables-3.2.0-1.el7.x86_64
---> Package python2-numexpr.x86_64 0:2.5.2-2.el7 will be installed
---> Package pytz.noarch 0:2016.10-2.el7 will be installed
---> Package scipy.x86_64 0:0.12.1-3.el7 will be installed
--> Processing Dependency: python-six for package: scipy-0.12.1-3.el7.x86_64
--> Processing Dependency: f2py for package: scipy-0.12.1-3.el7.x86_64
--> Processing Dependency: libumfpack.so.5()(64bit) for package: scipy-0.12.1-3.el7.x86_64
--> Processing Dependency: libamd.so.2()(64bit) for package: scipy-0.12.1-3.el7.x86_64
---> Package ttmkfdir.x86_64 0:3.0.9-42.el7 will be installed
---> Package xorg-x11-font-utils.x86_64 1:7.5-20.el7 will be installed
--> Processing Dependency: libfontenc.so.1()(64bit) for package: 1:xorg-x11-font-utils-7.5-20.el7.x86_64
--> Processing Dependency: libXfont.so.1()(64bit) for package: 1:xorg-x11-font-utils-7.5-20.el7.x86_64
--> Running transaction check
---> Package agg.x86_64 0:2.5-18.el7 will be installed
--> Processing Dependency: libSDL-1.2.so.0()(64bit) for package: agg-2.5-18.el7.x86_64
---> Package alsa-lib.x86_64 0:1.1.3-3.el7 will be installed
---> Package atk.x86_64 0:2.22.0-3.el7 will be installed
---> Package blas.x86_64 0:3.4.2-8.el7 will be installed
---> Package blosc.x86_64 0:1.6.1-1.el7 will be installed
--> Processing Dependency: liblz4.so.1()(64bit) for package: blosc-1.6.1-1.el7.x86_64
--> Processing Dependency: libsnappy.so.1()(64bit) for package: blosc-1.6.1-1.el7.x86_64
---> Package boost-thread.x86_64 0:1.53.0-27.el7 will be installed
---> Package copy-jdk-configs.noarch 0:2.2-5.el7_4 will be installed
---> Package dejavu-sans-fonts.noarch 0:2.33-6.el7 will be installed
--> Processing Dependency: dejavu-fonts-common = 2.33-6.el7 for package: dejavu-sans-fonts-2.33-6.el7.noarch
---> Package easymock2.noarch 0:2.5.2-12.el7 will be installed
---> Package expat-devel.x86_64 0:2.1.0-10.el7_3 will be installed
---> Package fontpackages-filesystem.noarch 0:1.44-8.el7 will be installed
---> Package gdk-pixbuf2.x86_64 0:2.36.5-1.el7 will be installed
--> Processing Dependency: libjasper.so.1()(64bit) for package: gdk-pixbuf2-2.36.5-1.el7.x86_64
---> Package giflib.x86_64 0:4.1.6-9.el7 will be installed
--> Processing Dependency: libSM.so.6()(64bit) for package: giflib-4.1.6-9.el7.x86_64
--> Processing Dependency: libICE.so.6()(64bit) for package: giflib-4.1.6-9.el7.x86_64
---> Package gl-manpages.noarch 0:1.1-7.20130122.el7 will be installed
---> Package gtk2.x86_64 0:2.24.31-1.el7 will be installed
--> Processing Dependency: libXrandr >= 1.2.99.4-2 for package: gtk2-2.24.31-1.el7.x86_64
--> Processing Dependency: hicolor-icon-theme for package: gtk2-2.24.31-1.el7.x86_64
--> Processing Dependency: gtk-update-icon-cache for package: gtk2-2.24.31-1.el7.x86_64
--> Processing Dependency: libcups.so.2()(64bit) for package: gtk2-2.24.31-1.el7.x86_64
--> Processing Dependency: libXrandr.so.2()(64bit) for package: gtk2-2.24.31-1.el7.x86_64
--> Processing Dependency: libXinerama.so.1()(64bit) for package: gtk2-2.24.31-1.el7.x86_64
--> Processing Dependency: libXfixes.so.3()(64bit) for package: gtk2-2.24.31-1.el7.x86_64
--> Processing Dependency: libXdamage.so.1()(64bit) for package: gtk2-2.24.31-1.el7.x86_64
--> Processing Dependency: libXcursor.so.1()(64bit) for package: gtk2-2.24.31-1.el7.x86_64
---> Package hdf5.x86_64 0:1.8.12-10.el7 will be installed
--> Processing Dependency: libsz.so.2()(64bit) for package: hdf5-1.8.12-10.el7.x86_64
---> Package jbigkit-libs.x86_64 0:2.0-11.el7 will be installed
---> Package libX11-common.noarch 0:1.6.5-1.el7 will be installed
---> Package libXau-devel.x86_64 0:1.0.8-2.1.el7 will be installed
--> Processing Dependency: libXau = 1.0.8-2.1.el7 for package: libXau-devel-1.0.8-2.1.el7.x86_64
--> Processing Dependency: libXau.so.6()(64bit) for package: libXau-devel-1.0.8-2.1.el7.x86_64
---> Package libXcomposite.x86_64 0:0.4.4-4.1.el7 will be installed
---> Package libXdamage-devel.x86_64 0:1.1.4-4.1.el7 will be installed
---> Package libXext.x86_64 0:1.3.3-3.el7 will be installed
---> Package libXfixes-devel.x86_64 0:5.0.3-1.el7 will be installed
---> Package libXfont.x86_64 0:1.5.2-1.el7 will be installed
---> Package libXi.x86_64 0:1.7.9-1.el7 will be installed
---> Package libXrender.x86_64 0:0.9.10-1.el7 will be installed
---> Package libXtst.x86_64 0:1.2.3-1.el7 will be installed
---> Package libXxf86vm-devel.x86_64 0:1.1.4-1.el7 will be installed
--> Processing Dependency: libXxf86vm = 1.1.4-1.el7 for package: libXxf86vm-devel-1.1.4-1.el7.x86_64
--> Processing Dependency: libXxf86vm.so.1()(64bit) for package: libXxf86vm-devel-1.1.4-1.el7.x86_64
---> Package libdrm-devel.x86_64 0:2.4.74-1.el7 will be installed
--> Processing Dependency: libdrm = 2.4.74-1.el7 for package: libdrm-devel-2.4.74-1.el7.x86_64
--> Processing Dependency: libkms.so.1()(64bit) for package: libdrm-devel-2.4.74-1.el7.x86_64
--> Processing Dependency: libdrm_radeon.so.1()(64bit) for package: libdrm-devel-2.4.74-1.el7.x86_64
--> Processing Dependency: libdrm_nouveau.so.2()(64bit) for package: libdrm-devel-2.4.74-1.el7.x86_64
--> Processing Dependency: libdrm_intel.so.1()(64bit) for package: libdrm-devel-2.4.74-1.el7.x86_64
--> Processing Dependency: libdrm_amdgpu.so.1()(64bit) for package: libdrm-devel-2.4.74-1.el7.x86_64
--> Processing Dependency: libdrm.so.2()(64bit) for package: libdrm-devel-2.4.74-1.el7.x86_64
---> Package libfontenc.x86_64 0:1.1.3-3.el7 will be installed
---> Package libicu.x86_64 0:50.1.2-15.el7 will be installed
---> Package libpng.x86_64 2:1.5.13-7.el7_2 will be installed
---> Package libxcb.x86_64 0:1.12-1.el7 will be installed
---> Package libxslt.x86_64 0:1.1.28-5.el7 will be installed
---> Package lksctp-tools.x86_64 0:1.0.17-2.el7 will be installed
---> Package lyx-fonts.noarch 0:2.2.3-1.el7 will be installed
---> Package lzo.x86_64 0:2.06-8.el7 will be installed
---> Package mesa-libEGL.x86_64 0:17.0.1-6.20170307.el7 will be installed
--> Processing Dependency: mesa-libgbm = 17.0.1-6.20170307.el7 for package: mesa-libEGL-17.0.1-6.20170307.el7.x86_64
--> Processing Dependency: libxshmfence.so.1()(64bit) for package: mesa-libEGL-17.0.1-6.20170307.el7.x86_64
--> Processing Dependency: libgbm.so.1()(64bit) for package: mesa-libEGL-17.0.1-6.20170307.el7.x86_64
---> Package mesa-libGL.x86_64 0:17.0.1-6.20170307.el7 will be installed
---> Package mesa-libglapi.x86_64 0:17.0.1-6.20170307.el7 will be installed
---> Package numpy-f2py.x86_64 1:1.7.1-11.el7 will be installed
---> Package pango.x86_64 0:1.40.4-1.el7 will be installed
--> Processing Dependency: libthai(x86-64) >= 0.1.9 for package: pango-1.40.4-1.el7.x86_64
--> Processing Dependency: libXft(x86-64) >= 2.0.0 for package: pango-1.40.4-1.el7.x86_64
--> Processing Dependency: harfbuzz(x86-64) >= 1.0.3 for package: pango-1.40.4-1.el7.x86_64
--> Processing Dependency: libthai.so.0(LIBTHAI_0.1)(64bit) for package: pango-1.40.4-1.el7.x86_64
--> Processing Dependency: libthai.so.0()(64bit) for package: pango-1.40.4-1.el7.x86_64
--> Processing Dependency: libharfbuzz.so.0()(64bit) for package: pango-1.40.4-1.el7.x86_64
--> Processing Dependency: libXft.so.2()(64bit) for package: pango-1.40.4-1.el7.x86_64
---> Package pcre-devel.x86_64 0:8.32-17.el7 will be installed
---> Package pixman.x86_64 0:0.34.0-1.el7 will be installed
---> Package pygtk2.x86_64 0:2.24.0-9.el7 will be installed
--> Processing Dependency: pygobject2 for package: pygtk2-2.24.0-9.el7.x86_64
---> Package pyparsing.noarch 0:1.5.6-9.el7 will be installed
---> Package python-javapackages.noarch 0:3.4.1-11.el7 will be installed
--> Processing Dependency: python-lxml for package: python-javapackages-3.4.1-11.el7.noarch
---> Package python-setuptools.noarch 0:0.9.8-7.el7 will be installed
--> Processing Dependency: python-backports-ssl_match_hostname for package: python-setuptools-0.9.8-7.el7.noarch
---> Package python-six.noarch 0:1.9.0-2.el7 will be installed
---> Package qdox.noarch 0:1.12.1-10.el7 will be installed
---> Package stix-fonts.noarch 0:1.1.0-5.el7 will be installed
---> Package suitesparse.x86_64 0:4.0.2-10.el7 will be installed
--> Processing Dependency: libtbbmalloc.so.2()(64bit) for package: suitesparse-4.0.2-10.el7.x86_64
--> Processing Dependency: libtbb.so.2()(64bit) for package: suitesparse-4.0.2-10.el7.x86_64
---> Package texlive-dvipng-bin.x86_64 2:svn26509.0-38.20130427_r30134.el7 will be installed
--> Processing Dependency: texlive-kpathsea-lib = 2:2012-38.20130427_r30134.el7 for package: 2:texlive-dvipng-bin-svn26509.0-38.20130427_r30134.el7.x86_64
--> Processing Dependency: texlive-base for package: 2:texlive-dvipng-bin-svn26509.0-38.20130427_r30134.el7.x86_64
--> Processing Dependency: tex-dvipng for package: 2:texlive-dvipng-bin-svn26509.0-38.20130427_r30134.el7.x86_64
--> Processing Dependency: libt1.so.5()(64bit) for package: 2:texlive-dvipng-bin-svn26509.0-38.20130427_r30134.el7.x86_64
--> Processing Dependency: libkpathsea.so.6()(64bit) for package: 2:texlive-dvipng-bin-svn26509.0-38.20130427_r30134.el7.x86_64
--> Processing Dependency: libgd.so.2()(64bit) for package: 2:texlive-dvipng-bin-svn26509.0-38.20130427_r30134.el7.x86_64
---> Package tzdata-java.noarch 0:2018d-1.el7 will be installed
---> Package xorg-x11-proto-devel.noarch 0:7.7-20.el7 will be installed
---> Package zlib-devel.x86_64 0:1.2.7-17.el7 will be installed
--> Running transaction check
---> Package SDL.x86_64 0:1.2.15-14.el7 will be installed
---> Package cups-libs.x86_64 1:1.6.3-29.el7 will be installed
--> Processing Dependency: libavahi-common.so.3()(64bit) for package: 1:cups-libs-1.6.3-29.el7.x86_64
--> Processing Dependency: libavahi-client.so.3()(64bit) for package: 1:cups-libs-1.6.3-29.el7.x86_64
---> Package dejavu-fonts-common.noarch 0:2.33-6.el7 will be installed
---> Package gd.x86_64 0:2.0.35-26.el7 will be installed
--> Processing Dependency: libXpm.so.4()(64bit) for package: gd-2.0.35-26.el7.x86_64
---> Package gtk-update-icon-cache.x86_64 0:3.22.10-5.el7_4 will be installed
---> Package harfbuzz.x86_64 0:1.3.2-1.el7 will be installed
--> Processing Dependency: libgraphite2.so.3()(64bit) for package: harfbuzz-1.3.2-1.el7.x86_64
---> Package hicolor-icon-theme.noarch 0:0.12-7.el7 will be installed
---> Package jasper-libs.x86_64 0:1.900.1-31.el7 will be installed
---> Package libICE.x86_64 0:1.0.9-9.el7 will be installed
---> Package libSM.x86_64 0:1.2.2-2.el7 will be installed
---> Package libXau.x86_64 0:1.0.8-2.1.el7 will be installed
---> Package libXcursor.x86_64 0:1.1.14-8.el7 will be installed
---> Package libXdamage.x86_64 0:1.1.4-4.1.el7 will be installed
---> Package libXfixes.x86_64 0:5.0.3-1.el7 will be installed
---> Package libXft.x86_64 0:2.3.2-2.el7 will be installed
---> Package libXinerama.x86_64 0:1.1.3-2.1.el7 will be installed
---> Package libXrandr.x86_64 0:1.5.1-2.el7 will be installed
---> Package libXxf86vm.x86_64 0:1.1.4-1.el7 will be installed
---> Package libaec.x86_64 0:1.0.2-1.el7 will be installed
---> Package libdrm.x86_64 0:2.4.74-1.el7 will be installed
--> Processing Dependency: udev for package: libdrm-2.4.74-1.el7.x86_64
--> Processing Dependency: libpciaccess.so.0()(64bit) for package: libdrm-2.4.74-1.el7.x86_64
---> Package libthai.x86_64 0:0.1.14-9.el7 will be installed
---> Package libxshmfence.x86_64 0:1.2-1.el7 will be installed
---> Package lz4.x86_64 0:1.7.3-1.el7 will be installed
---> Package mesa-libgbm.x86_64 0:17.0.1-6.20170307.el7 will be installed
---> Package pygobject2.x86_64 0:2.28.6-11.el7 will be installed
---> Package python-backports-ssl_match_hostname.noarch 0:3.4.0.2-4.el7 will be installed
--> Processing Dependency: python-backports for package: python-backports-ssl_match_hostname-3.4.0.2-4.el7.noarch
---> Package python-lxml.x86_64 0:3.2.1-4.el7 will be installed
---> Package snappy.x86_64 0:1.1.0-3.el7 will be installed
---> Package t1lib.x86_64 0:5.1.2-14.el7 will be installed
---> Package tbb.x86_64 0:4.1-9.20130314.el7 will be installed
---> Package texlive-base.noarch 2:2012-38.20130427_r30134.el7 will be installed
---> Package texlive-dvipng.noarch 2:svn26689.1.14-38.el7 will be installed
--> Processing Dependency: texlive-kpathsea-bin for package: 2:texlive-dvipng-svn26689.1.14-38.el7.noarch
--> Processing Dependency: tex-kpathsea for package: 2:texlive-dvipng-svn26689.1.14-38.el7.noarch
---> Package texlive-kpathsea-lib.x86_64 2:2012-38.20130427_r30134.el7 will be installed
--> Running transaction check
---> Package avahi-libs.x86_64 0:0.6.31-17.el7 will be installed
--> Processing Dependency: libdbus-1.so.3()(64bit) for package: avahi-libs-0.6.31-17.el7.x86_64
---> Package graphite2.x86_64 0:1.3.10-1.el7_3 will be installed
---> Package libXpm.x86_64 0:3.5.12-1.el7 will be installed
---> Package libpciaccess.x86_64 0:0.13.4-3.1.el7_4 will be installed
--> Processing Dependency: hwdata for package: libpciaccess-0.13.4-3.1.el7_4.x86_64
---> Package python-backports.x86_64 0:1.0-8.el7 will be installed
---> Package systemd.x86_64 0:219-42.el7_4.10 will be installed
--> Processing Dependency: kmod >= 18-4 for package: systemd-219-42.el7_4.10.x86_64
--> Processing Dependency: libkmod.so.2(LIBKMOD_5)(64bit) for package: systemd-219-42.el7_4.10.x86_64
--> Processing Dependency: libcryptsetup.so.4(CRYPTSETUP_1.0)(64bit) for package: systemd-219-42.el7_4.10.x86_64
--> Processing Dependency: dbus for package: systemd-219-42.el7_4.10.x86_64
--> Processing Dependency: acl for package: systemd-219-42.el7_4.10.x86_64
--> Processing Dependency: libqrencode.so.3()(64bit) for package: systemd-219-42.el7_4.10.x86_64
--> Processing Dependency: libkmod.so.2()(64bit) for package: systemd-219-42.el7_4.10.x86_64
--> Processing Dependency: libcryptsetup.so.4()(64bit) for package: systemd-219-42.el7_4.10.x86_64
---> Package texlive-kpathsea.noarch 2:svn28792.0-38.el7 will be installed
---> Package texlive-kpathsea-bin.x86_64 2:svn27347.0-38.20130427_r30134.el7 will be installed
--> Running transaction check
---> Package acl.x86_64 0:2.2.51-12.el7 will be installed
---> Package cryptsetup-libs.x86_64 0:1.7.4-3.el7_4.1 will be installed
--> Processing Dependency: libdevmapper.so.1.02(DM_1_02_97)(64bit) for package: cryptsetup-libs-1.7.4-3.el7_4.1.x86_64
--> Processing Dependency: libdevmapper.so.1.02(Base)(64bit) for package: cryptsetup-libs-1.7.4-3.el7_4.1.x86_64
--> Processing Dependency: libdevmapper.so.1.02()(64bit) for package: cryptsetup-libs-1.7.4-3.el7_4.1.x86_64
---> Package dbus.x86_64 1:1.6.12-17.el7 will be installed
---> Package dbus-libs.x86_64 1:1.6.12-17.el7 will be installed
---> Package hwdata.x86_64 0:0.252-8.6.el7 will be installed
---> Package kmod.x86_64 0:20-15.el7_4.7 will be installed
--> Processing Dependency: dracut for package: kmod-20-15.el7_4.7.x86_64
---> Package kmod-libs.x86_64 0:20-15.el7_4.7 will be installed
---> Package qrencode-libs.x86_64 0:3.4.1-3.el7 will be installed
--> Running transaction check
---> Package device-mapper-libs.x86_64 7:1.02.140-8.el7 will be installed
--> Processing Dependency: device-mapper = 7:1.02.140-8.el7 for package: 7:device-mapper-libs-1.02.140-8.el7.x86_64
---> Package dracut.x86_64 0:033-502.el7_4.1 will be installed
--> Processing Dependency: procps-ng for package: dracut-033-502.el7_4.1.x86_64
--> Processing Dependency: kpartx for package: dracut-033-502.el7_4.1.x86_64
--> Processing Dependency: hardlink for package: dracut-033-502.el7_4.1.x86_64
--> Running transaction check
---> Package device-mapper.x86_64 7:1.02.140-8.el7 will be installed
---> Package hardlink.x86_64 1:1.0-19.el7 will be installed
---> Package kpartx.x86_64 0:0.4.9-111.el7_4.2 will be installed
---> Package procps-ng.x86_64 0:3.3.10-16.el7 will be installed
--> Finished Dependency Resolution

Dependencies Resolved

================================================================================
 Package                     Arch   Version                       Repository
                                                                           Size
================================================================================
Installing:
 bison                       x86_64 3.0.4-1.el7                   base    674 k
 boost-devel                 x86_64 1.53.0-27.el7                 base    7.0 M
 cairo-devel                 x86_64 1.14.8-2.el7                  base    366 k
 chrpath                     x86_64 0.16-0.el7                    base     26 k
 cmake                       x86_64 2.8.12.2-2.el7                base    7.1 M
 eigen3-devel                noarch 3.2.5-2.el7                   epel    623 k
 flex                        x86_64 2.5.37-3.el7                  base    292 k
 inchi-devel                 x86_64 1.0.4-4.el7                   epel     19 k
 java-1.8.0-openjdk-devel    x86_64 1:1.8.0.161-0.b14.el7_4       updates 9.8 M
 junit                       noarch 4.11-8.el7                    base    261 k
 numpy                       x86_64 1:1.7.1-11.el7                base    2.8 M
 postgresql                  x86_64 9.2.23-3.el7_4                updates 3.0 M
 postgresql-devel            x86_64 9.2.23-3.el7_4                updates 952 k
 pycairo                     x86_64 1.8.10-8.el7                  base    157 k
 python-devel                x86_64 2.7.5-58.el7                  base    395 k
 python-pandas               x86_64 0.17.1-1.el7                  epel    6.6 M
 python-pillow               x86_64 2.0.0-19.gitd1c6db8.el7       base    438 k
 swig                        x86_64 2.0.10-5.el7                  base    1.3 M
 xorg-x11-fonts-Type1        noarch 7.5-9.el7                     base    521 k
Installing for dependencies:
 SDL                         x86_64 1.2.15-14.el7                 base    204 k
 acl                         x86_64 2.2.51-12.el7                 base     81 k
 agg                         x86_64 2.5-18.el7                    base    145 k
 alsa-lib                    x86_64 1.1.3-3.el7                   base    421 k
 atk                         x86_64 2.22.0-3.el7                  base    258 k
 atlas                       x86_64 3.10.1-12.el7                 base    4.5 M
 avahi-libs                  x86_64 0.6.31-17.el7                 base     61 k
 blas                        x86_64 3.4.2-8.el7                   base    399 k
 blosc                       x86_64 1.6.1-1.el7                   epel     34 k
 boost                       x86_64 1.53.0-27.el7                 base     33 k
 boost-atomic                x86_64 1.53.0-27.el7                 base     35 k
 boost-chrono                x86_64 1.53.0-27.el7                 base     44 k
 boost-context               x86_64 1.53.0-27.el7                 base     36 k
 boost-date-time             x86_64 1.53.0-27.el7                 base     52 k
 boost-filesystem            x86_64 1.53.0-27.el7                 base     68 k
 boost-graph                 x86_64 1.53.0-27.el7                 base    136 k
 boost-iostreams             x86_64 1.53.0-27.el7                 base     61 k
 boost-locale                x86_64 1.53.0-27.el7                 base    251 k
 boost-math                  x86_64 1.53.0-27.el7                 base    334 k
 boost-program-options       x86_64 1.53.0-27.el7                 base    156 k
 boost-python                x86_64 1.53.0-27.el7                 base    129 k
 boost-random                x86_64 1.53.0-27.el7                 base     39 k
 boost-regex                 x86_64 1.53.0-27.el7                 base    300 k
 boost-serialization         x86_64 1.53.0-27.el7                 base    169 k
 boost-signals               x86_64 1.53.0-27.el7                 base     60 k
 boost-system                x86_64 1.53.0-27.el7                 base     40 k
 boost-test                  x86_64 1.53.0-27.el7                 base    223 k
 boost-thread                x86_64 1.53.0-27.el7                 base     57 k
 boost-timer                 x86_64 1.53.0-27.el7                 base     43 k
 boost-wave                  x86_64 1.53.0-27.el7                 base    210 k
 cairo                       x86_64 1.14.8-2.el7                  base    713 k
 copy-jdk-configs            noarch 2.2-5.el7_4                   updates  19 k
 cryptsetup-libs             x86_64 1.7.4-3.el7_4.1               updates 223 k
 cups-libs                   x86_64 1:1.6.3-29.el7                base    356 k
 dbus                        x86_64 1:1.6.12-17.el7               base    307 k
 dbus-libs                   x86_64 1:1.6.12-17.el7               base    151 k
 dejavu-fonts-common         noarch 2.33-6.el7                    base     64 k
 dejavu-sans-fonts           noarch 2.33-6.el7                    base    1.4 M
 device-mapper               x86_64 7:1.02.140-8.el7              base    280 k
 device-mapper-libs          x86_64 7:1.02.140-8.el7              base    312 k
 dracut                      x86_64 033-502.el7_4.1               updates 321 k
 easymock2                   noarch 2.5.2-12.el7                  base     92 k
 expat-devel                 x86_64 2.1.0-10.el7_3                base     57 k
 fontconfig                  x86_64 2.10.95-11.el7                base    229 k
 fontconfig-devel            x86_64 2.10.95-11.el7                base    128 k
 fontpackages-filesystem     noarch 1.44-8.el7                    base    9.9 k
 freetype                    x86_64 2.4.11-15.el7                 base    392 k
 freetype-devel              x86_64 2.4.11-15.el7                 base    356 k
 gd                          x86_64 2.0.35-26.el7                 base    146 k
 gdk-pixbuf2                 x86_64 2.36.5-1.el7                  base    567 k
 giflib                      x86_64 4.1.6-9.el7                   base     40 k
 gl-manpages                 noarch 1.1-7.20130122.el7            base    994 k
 glib2-devel                 x86_64 2.50.3-3.el7                  base    443 k
 graphite2                   x86_64 1.3.10-1.el7_3                updates 115 k
 gtk-update-icon-cache       x86_64 3.22.10-5.el7_4               updates  28 k
 gtk2                        x86_64 2.24.31-1.el7                 base    3.4 M
 hamcrest                    noarch 1.3-6.el7                     base    124 k
 hardlink                    x86_64 1:1.0-19.el7                  base     14 k
 harfbuzz                    x86_64 1.3.2-1.el7                   base    177 k
 hdf5                        x86_64 1.8.12-10.el7                 epel    1.6 M
 hicolor-icon-theme          noarch 0.12-7.el7                    base     42 k
 hwdata                      x86_64 0.252-8.6.el7                 base    2.2 M
 inchi                       x86_64 1.0.4-4.el7                   epel    453 k
 jasper-libs                 x86_64 1.900.1-31.el7                base    150 k
 java-1.8.0-openjdk          x86_64 1:1.8.0.161-0.b14.el7_4       updates 243 k
 java-1.8.0-openjdk-headless x86_64 1:1.8.0.161-0.b14.el7_4       updates  32 M
 javapackages-tools          noarch 3.4.1-11.el7                  base     73 k
 jbigkit-libs                x86_64 2.0-11.el7                    base     46 k
 kmod                        x86_64 20-15.el7_4.7                 updates 121 k
 kmod-libs                   x86_64 20-15.el7_4.7                 updates  50 k
 kpartx                      x86_64 0.4.9-111.el7_4.2             updates  73 k
 lapack                      x86_64 3.4.2-8.el7                   base    5.4 M
 libICE                      x86_64 1.0.9-9.el7                   base     66 k
 libSM                       x86_64 1.2.2-2.el7                   base     39 k
 libX11                      x86_64 1.6.5-1.el7                   base    606 k
 libX11-common               noarch 1.6.5-1.el7                   base    164 k
 libX11-devel                x86_64 1.6.5-1.el7                   base    980 k
 libXau                      x86_64 1.0.8-2.1.el7                 base     29 k
 libXau-devel                x86_64 1.0.8-2.1.el7                 base     14 k
 libXcomposite               x86_64 0.4.4-4.1.el7                 base     22 k
 libXcursor                  x86_64 1.1.14-8.el7                  base     30 k
 libXdamage                  x86_64 1.1.4-4.1.el7                 base     20 k
 libXdamage-devel            x86_64 1.1.4-4.1.el7                 base    9.7 k
 libXext                     x86_64 1.3.3-3.el7                   base     39 k
 libXext-devel               x86_64 1.3.3-3.el7                   base     75 k
 libXfixes                   x86_64 5.0.3-1.el7                   base     18 k
 libXfixes-devel             x86_64 5.0.3-1.el7                   base     13 k
 libXfont                    x86_64 1.5.2-1.el7                   base    152 k
 libXft                      x86_64 2.3.2-2.el7                   base     58 k
 libXi                       x86_64 1.7.9-1.el7                   base     40 k
 libXinerama                 x86_64 1.1.3-2.1.el7                 base     14 k
 libXpm                      x86_64 3.5.12-1.el7                  base     55 k
 libXrandr                   x86_64 1.5.1-2.el7                   base     27 k
 libXrender                  x86_64 0.9.10-1.el7                  base     26 k
 libXrender-devel            x86_64 0.9.10-1.el7                  base     17 k
 libXtst                     x86_64 1.2.3-1.el7                   base     20 k
 libXxf86vm                  x86_64 1.1.4-1.el7                   base     18 k
 libXxf86vm-devel            x86_64 1.1.4-1.el7                   base     18 k
 libaec                      x86_64 1.0.2-1.el7                   epel     33 k
 libarchive                  x86_64 3.1.2-10.el7_2                base    318 k
 libdrm                      x86_64 2.4.74-1.el7                  base    146 k
 libdrm-devel                x86_64 2.4.74-1.el7                  base    120 k
 libfontenc                  x86_64 1.1.3-3.el7                   base     31 k
 libgfortran                 x86_64 4.8.5-16.el7_4.2              updates 296 k
 libicu                      x86_64 50.1.2-15.el7                 base    6.9 M
 libjpeg-turbo               x86_64 1.2.90-5.el7                  base    134 k
 libpciaccess                x86_64 0.13.4-3.1.el7_4              updates  26 k
 libpng                      x86_64 2:1.5.13-7.el7_2              base    213 k
 libpng-devel                x86_64 2:1.5.13-7.el7_2              base    122 k
 libquadmath                 x86_64 4.8.5-16.el7_4.2              updates 186 k
 libthai                     x86_64 0.1.14-9.el7                  base    187 k
 libtiff                     x86_64 4.0.3-27.el7_3                base    170 k
 libwebp                     x86_64 0.3.0-7.el7                   base    170 k
 libxcb                      x86_64 1.12-1.el7                    base    211 k
 libxcb-devel                x86_64 1.12-1.el7                    base    1.0 M
 libxshmfence                x86_64 1.2-1.el7                     base    7.2 k
 libxslt                     x86_64 1.1.28-5.el7                  base    242 k
 lksctp-tools                x86_64 1.0.17-2.el7                  base     88 k
 lyx-fonts                   noarch 2.2.3-1.el7                   epel    159 k
 lz4                         x86_64 1.7.3-1.el7                   epel     82 k
 lzo                         x86_64 2.06-8.el7                    base     59 k
 m4                          x86_64 1.4.16-10.el7                 base    256 k
 mesa-libEGL                 x86_64 17.0.1-6.20170307.el7         base     82 k
 mesa-libEGL-devel           x86_64 17.0.1-6.20170307.el7         base     30 k
 mesa-libGL                  x86_64 17.0.1-6.20170307.el7         base    155 k
 mesa-libGL-devel            x86_64 17.0.1-6.20170307.el7         base    151 k
 mesa-libgbm                 x86_64 17.0.1-6.20170307.el7         base     32 k
 mesa-libglapi               x86_64 17.0.1-6.20170307.el7         base     41 k
 numpy-f2py                  x86_64 1:1.7.1-11.el7                base    205 k
 pango                       x86_64 1.40.4-1.el7                  base    275 k
 pcre-devel                  x86_64 8.32-17.el7                   base    480 k
 pixman                      x86_64 0.34.0-1.el7                  base    248 k
 pixman-devel                x86_64 0.34.0-1.el7                  base     20 k
 postgresql-libs             x86_64 9.2.23-3.el7_4                updates 234 k
 procps-ng                   x86_64 3.3.10-16.el7                 base    289 k
 pygobject2                  x86_64 2.28.6-11.el7                 base    226 k
 pygtk2                      x86_64 2.24.0-9.el7                  base    914 k
 pyparsing                   noarch 1.5.6-9.el7                   base     94 k
 python                      x86_64 2.7.5-58.el7                  base     91 k
 python-Bottleneck           x86_64 0.7.0-1.el7                   epel    864 k
 python-backports            x86_64 1.0-8.el7                     base    5.8 k
 python-backports-ssl_match_hostname
                             noarch 3.4.0.2-4.el7                 base     12 k
 python-dateutil             noarch 1.5-7.el7                     base     85 k
 python-javapackages         noarch 3.4.1-11.el7                  base     31 k
 python-lxml                 x86_64 3.2.1-4.el7                   base    758 k
 python-matplotlib           x86_64 1.2.0-15.el7                  base     26 M
 python-nose                 noarch 1.3.7-1.el7                   base    276 k
 python-setuptools           noarch 0.9.8-7.el7                   base    397 k
 python-six                  noarch 1.9.0-2.el7                   base     29 k
 python-tables               x86_64 3.2.0-1.el7                   epel    1.2 M
 python2-numexpr             x86_64 2.5.2-2.el7                   epel    180 k
 pytz                        noarch 2016.10-2.el7                 base     46 k
 qdox                        noarch 1.12.1-10.el7                 base    170 k
 qrencode-libs               x86_64 3.4.1-3.el7                   base     50 k
 scipy                       x86_64 0.12.1-3.el7                  base    9.3 M
 snappy                      x86_64 1.1.0-3.el7                   base     40 k
 stix-fonts                  noarch 1.1.0-5.el7                   base    1.3 M
 suitesparse                 x86_64 4.0.2-10.el7                  base    928 k
 systemd                     x86_64 219-42.el7_4.10               updates 5.2 M
 t1lib                       x86_64 5.1.2-14.el7                  base    166 k
 tbb                         x86_64 4.1-9.20130314.el7            base    124 k
 texlive-base                noarch 2:2012-38.20130427_r30134.el7 base    325 k
 texlive-dvipng              noarch 2:svn26689.1.14-38.el7        base     44 k
 texlive-dvipng-bin          x86_64 2:svn26509.0-38.20130427_r30134.el7
                                                                  base     63 k
 texlive-kpathsea            noarch 2:svn28792.0-38.el7           base    140 k
 texlive-kpathsea-bin        x86_64 2:svn27347.0-38.20130427_r30134.el7
                                                                  base     40 k
 texlive-kpathsea-lib        x86_64 2:2012-38.20130427_r30134.el7 base     78 k
 ttmkfdir                    x86_64 3.0.9-42.el7                  base     48 k
 tzdata-java                 noarch 2018d-1.el7                   updates 184 k
 xorg-x11-font-utils         x86_64 1:7.5-20.el7                  base     87 k
 xorg-x11-proto-devel        noarch 7.7-20.el7                    base    284 k
 zlib-devel                  x86_64 1.2.7-17.el7                  base     50 k

Transaction Summary
================================================================================
Install  19 Packages (+172 Dependent packages)

Total download size: 169 M
Installed size: 637 M
Downloading packages:
(1/191): alsa-lib-1.1.3-3.el7.x86_64.rpm                   | 421 kB   00:00     
(2/191): atk-2.22.0-3.el7.x86_64.rpm                       | 258 kB   00:00     
(3/191): SDL-1.2.15-14.el7.x86_64.rpm                      | 204 kB   00:00     
(4/191): acl-2.2.51-12.el7.x86_64.rpm                      |  81 kB   00:00     
(5/191): agg-2.5-18.el7.x86_64.rpm                         | 145 kB   00:00     
(6/191): avahi-libs-0.6.31-17.el7.x86_64.rpm               |  61 kB   00:00     
(7/191): bison-3.0.4-1.el7.x86_64.rpm                      | 674 kB   00:00     
(8/191): boost-atomic-1.53.0-27.el7.x86_64.rpm             |  35 kB   00:00     
(9/191): boost-1.53.0-27.el7.x86_64.rpm                    |  33 kB   00:00     
(10/191): boost-chrono-1.53.0-27.el7.x86_64.rpm            |  44 kB   00:00     
(11/191): blosc-1.6.1-1.el7.x86_64.rpm                     |  34 kB   00:00     
(12/191): atlas-3.10.1-12.el7.x86_64.rpm                   | 4.5 MB   00:00     
(13/191): boost-date-time-1.53.0-27.el7.x86_64.rpm         |  52 kB   00:00     
(14/191): boost-filesystem-1.53.0-27.el7.x86_64.rpm        |  68 kB   00:00     
(15/191): boost-iostreams-1.53.0-27.el7.x86_64.rpm         |  61 kB   00:00     
(16/191): boost-locale-1.53.0-27.el7.x86_64.rpm            | 251 kB   00:00     
(17/191): boost-context-1.53.0-27.el7.x86_64.rpm           |  36 kB   00:00     
(18/191): boost-math-1.53.0-27.el7.x86_64.rpm              | 334 kB   00:00     
(19/191): boost-program-options-1.53.0-27.el7.x86_64.rpm   | 156 kB   00:00     
(20/191): boost-python-1.53.0-27.el7.x86_64.rpm            | 129 kB   00:00     
(21/191): blas-3.4.2-8.el7.x86_64.rpm                      | 399 kB   00:00     
(22/191): boost-graph-1.53.0-27.el7.x86_64.rpm             | 136 kB   00:00     
(23/191): boost-random-1.53.0-27.el7.x86_64.rpm            |  39 kB   00:00     
(24/191): boost-serialization-1.53.0-27.el7.x86_64.rpm     | 169 kB   00:00     
(25/191): boost-regex-1.53.0-27.el7.x86_64.rpm             | 300 kB   00:00     
(26/191): boost-signals-1.53.0-27.el7.x86_64.rpm           |  60 kB   00:00     
(27/191): boost-system-1.53.0-27.el7.x86_64.rpm            |  40 kB   00:00     
(28/191): boost-devel-1.53.0-27.el7.x86_64.rpm             | 7.0 MB   00:00     
(29/191): boost-test-1.53.0-27.el7.x86_64.rpm              | 223 kB   00:00     
(30/191): boost-thread-1.53.0-27.el7.x86_64.rpm            |  57 kB   00:00     
(31/191): boost-timer-1.53.0-27.el7.x86_64.rpm             |  43 kB   00:00     
(32/191): boost-wave-1.53.0-27.el7.x86_64.rpm              | 210 kB   00:00     
(33/191): chrpath-0.16-0.el7.x86_64.rpm                    |  26 kB   00:00     
(34/191): cairo-1.14.8-2.el7.x86_64.rpm                    | 713 kB   00:00     
(35/191): cairo-devel-1.14.8-2.el7.x86_64.rpm              | 366 kB   00:00     
(36/191): cups-libs-1.6.3-29.el7.x86_64.rpm                | 356 kB   00:00     
(37/191): dbus-libs-1.6.12-17.el7.x86_64.rpm               | 151 kB   00:00     
(38/191): dejavu-fonts-common-2.33-6.el7.noarch.rpm        |  64 kB   00:00     
(39/191): copy-jdk-configs-2.2-5.el7_4.noarch.rpm          |  19 kB   00:00     
(40/191): dbus-1.6.12-17.el7.x86_64.rpm                    | 307 kB   00:00     
(41/191): dejavu-sans-fonts-2.33-6.el7.noarch.rpm          | 1.4 MB   00:00     
(42/191): cmake-2.8.12.2-2.el7.x86_64.rpm                  | 7.1 MB   00:00     
(43/191): cryptsetup-libs-1.7.4-3.el7_4.1.x86_64.rpm       | 223 kB   00:00     
(44/191): easymock2-2.5.2-12.el7.noarch.rpm                |  92 kB   00:00     
(45/191): device-mapper-1.02.140-8.el7.x86_64.rpm          | 280 kB   00:00     
(46/191): expat-devel-2.1.0-10.el7_3.x86_64.rpm            |  57 kB   00:00     
(47/191): fontconfig-2.10.95-11.el7.x86_64.rpm             | 229 kB   00:00     
(48/191): fontconfig-devel-2.10.95-11.el7.x86_64.rpm       | 128 kB   00:00     
(49/191): dracut-033-502.el7_4.1.x86_64.rpm                | 321 kB   00:00     
(50/191): device-mapper-libs-1.02.140-8.el7.x86_64.rpm     | 312 kB   00:00     
(51/191): fontpackages-filesystem-1.44-8.el7.noarch.rpm    | 9.9 kB   00:00     
(52/191): flex-2.5.37-3.el7.x86_64.rpm                     | 292 kB   00:00     
(53/191): gd-2.0.35-26.el7.x86_64.rpm                      | 146 kB   00:00     
(54/191): freetype-2.4.11-15.el7.x86_64.rpm                | 392 kB   00:00     
(55/191): giflib-4.1.6-9.el7.x86_64.rpm                    |  40 kB   00:00     
(56/191): freetype-devel-2.4.11-15.el7.x86_64.rpm          | 356 kB   00:00     
(57/191): graphite2-1.3.10-1.el7_3.x86_64.rpm              | 115 kB   00:00     
(58/191): eigen3-devel-3.2.5-2.el7.noarch.rpm              | 623 kB   00:00     
(59/191): glib2-devel-2.50.3-3.el7.x86_64.rpm              | 443 kB   00:00     
(60/191): gtk-update-icon-cache-3.22.10-5.el7_4.x86_64.rpm |  28 kB   00:00     
(61/191): gdk-pixbuf2-2.36.5-1.el7.x86_64.rpm              | 567 kB   00:00     
(62/191): hamcrest-1.3-6.el7.noarch.rpm                    | 124 kB   00:00     
(63/191): gl-manpages-1.1-7.20130122.el7.noarch.rpm        | 994 kB   00:00     
(64/191): harfbuzz-1.3.2-1.el7.x86_64.rpm                  | 177 kB   00:00     
(65/191): hardlink-1.0-19.el7.x86_64.rpm                   |  14 kB   00:00     
(66/191): gtk2-2.24.31-1.el7.x86_64.rpm                    | 3.4 MB   00:00     
(67/191): hicolor-icon-theme-0.12-7.el7.noarch.rpm         |  42 kB   00:00     
(68/191): hwdata-0.252-8.6.el7.x86_64.rpm                  | 2.2 MB   00:00     
(69/191): hdf5-1.8.12-10.el7.x86_64.rpm                    | 1.6 MB   00:00     
(70/191): inchi-1.0.4-4.el7.x86_64.rpm                     | 453 kB   00:00     
(71/191): inchi-devel-1.0.4-4.el7.x86_64.rpm               |  19 kB   00:00     
(72/191): jasper-libs-1.900.1-31.el7.x86_64.rpm            | 150 kB   00:00     
(73/191): java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64. | 243 kB   00:00     
(74/191): javapackages-tools-3.4.1-11.el7.noarch.rpm       |  73 kB   00:00     
(75/191): kmod-20-15.el7_4.7.x86_64.rpm                    | 121 kB   00:00     
(76/191): jbigkit-libs-2.0-11.el7.x86_64.rpm               |  46 kB   00:00     
(77/191): kmod-libs-20-15.el7_4.7.x86_64.rpm               |  50 kB   00:00     
(78/191): junit-4.11-8.el7.noarch.rpm                      | 261 kB   00:00     
(79/191): libICE-1.0.9-9.el7.x86_64.rpm                    |  66 kB   00:00     
(80/191): libSM-1.2.2-2.el7.x86_64.rpm                     |  39 kB   00:00     
(81/191): lapack-3.4.2-8.el7.x86_64.rpm                    | 5.4 MB   00:00     
(82/191): libX11-common-1.6.5-1.el7.noarch.rpm             | 164 kB   00:00     
(83/191): libX11-devel-1.6.5-1.el7.x86_64.rpm              | 980 kB   00:00     
(84/191): kpartx-0.4.9-111.el7_4.2.x86_64.rpm              |  73 kB   00:00     
(85/191): libXau-1.0.8-2.1.el7.x86_64.rpm                  |  29 kB   00:00     
(86/191): libXcomposite-0.4.4-4.1.el7.x86_64.rpm           |  22 kB   00:00     
(87/191): java-1.8.0-openjdk-devel-1.8.0.161-0.b14.el7_4.x | 9.8 MB   00:00     
(88/191): libX11-1.6.5-1.el7.x86_64.rpm                    | 606 kB   00:00     
(89/191): libXcursor-1.1.14-8.el7.x86_64.rpm               |  30 kB   00:00     
(90/191): libXext-1.3.3-3.el7.x86_64.rpm                   |  39 kB   00:00     
(91/191): libXext-devel-1.3.3-3.el7.x86_64.rpm             |  75 kB   00:00     
(92/191): libXau-devel-1.0.8-2.1.el7.x86_64.rpm            |  14 kB   00:00     
(93/191): libXdamage-devel-1.1.4-4.1.el7.x86_64.rpm        | 9.7 kB   00:00     
(94/191): libXfixes-5.0.3-1.el7.x86_64.rpm                 |  18 kB   00:00     
(95/191): libXft-2.3.2-2.el7.x86_64.rpm                    |  58 kB   00:00     
(96/191): libXfixes-devel-5.0.3-1.el7.x86_64.rpm           |  13 kB   00:00     
(97/191): libXi-1.7.9-1.el7.x86_64.rpm                     |  40 kB   00:00     
(98/191): libXdamage-1.1.4-4.1.el7.x86_64.rpm              |  20 kB   00:00     
(99/191): libXpm-3.5.12-1.el7.x86_64.rpm                   |  55 kB   00:00     
(100/191): libXinerama-1.1.3-2.1.el7.x86_64.rpm            |  14 kB   00:00     
(101/191): libXrender-0.9.10-1.el7.x86_64.rpm              |  26 kB   00:00     
(102/191): libXfont-1.5.2-1.el7.x86_64.rpm                 | 152 kB   00:00     
(103/191): libXrandr-1.5.1-2.el7.x86_64.rpm                |  27 kB   00:00     
(104/191): libXtst-1.2.3-1.el7.x86_64.rpm                  |  20 kB   00:00     
(105/191): libXxf86vm-devel-1.1.4-1.el7.x86_64.rpm         |  18 kB   00:00     
(106/191): libXrender-devel-0.9.10-1.el7.x86_64.rpm        |  17 kB   00:00     
(107/191): libaec-1.0.2-1.el7.x86_64.rpm                   |  33 kB   00:00     
(108/191): libXxf86vm-1.1.4-1.el7.x86_64.rpm               |  18 kB   00:00     
(109/191): libdrm-devel-2.4.74-1.el7.x86_64.rpm            | 120 kB   00:00     
(110/191): libarchive-3.1.2-10.el7_2.x86_64.rpm            | 318 kB   00:00     
(111/191): libfontenc-1.1.3-3.el7.x86_64.rpm               |  31 kB   00:00     
(112/191): libdrm-2.4.74-1.el7.x86_64.rpm                  | 146 kB   00:00     
(113/191): libjpeg-turbo-1.2.90-5.el7.x86_64.rpm           | 134 kB   00:00     
(114/191): libpciaccess-0.13.4-3.1.el7_4.x86_64.rpm        |  26 kB   00:00     
(115/191): libpng-1.5.13-7.el7_2.x86_64.rpm                | 213 kB   00:00     
(116/191): libicu-50.1.2-15.el7.x86_64.rpm                 | 6.9 MB   00:00     
(117/191): libquadmath-4.8.5-16.el7_4.2.x86_64.rpm         | 186 kB   00:00     
(118/191): libgfortran-4.8.5-16.el7_4.2.x86_64.rpm         | 296 kB   00:00     
(119/191): libthai-0.1.14-9.el7.x86_64.rpm                 | 187 kB   00:00     
(120/191): libpng-devel-1.5.13-7.el7_2.x86_64.rpm          | 122 kB   00:00     
(121/191): libxcb-1.12-1.el7.x86_64.rpm                    | 211 kB   00:00     
(122/191): libxshmfence-1.2-1.el7.x86_64.rpm               | 7.2 kB   00:00     
(123/191): libtiff-4.0.3-27.el7_3.x86_64.rpm               | 170 kB   00:00     
(124/191): libxslt-1.1.28-5.el7.x86_64.rpm                 | 242 kB   00:00     
(125/191): libwebp-0.3.0-7.el7.x86_64.rpm                  | 170 kB   00:00     
(126/191): lksctp-tools-1.0.17-2.el7.x86_64.rpm            |  88 kB   00:00     
(127/191): libxcb-devel-1.12-1.el7.x86_64.rpm              | 1.0 MB   00:00     
(128/191): m4-1.4.16-10.el7.x86_64.rpm                     | 256 kB   00:00     
(129/191): lzo-2.06-8.el7.x86_64.rpm                       |  59 kB   00:00     
(130/191): mesa-libEGL-devel-17.0.1-6.20170307.el7.x86_64. |  30 kB   00:00     
(131/191): lyx-fonts-2.2.3-1.el7.noarch.rpm                | 159 kB   00:00     
(132/191): mesa-libGL-17.0.1-6.20170307.el7.x86_64.rpm     | 155 kB   00:00     
(133/191): mesa-libEGL-17.0.1-6.20170307.el7.x86_64.rpm    |  82 kB   00:00     
(134/191): lz4-1.7.3-1.el7.x86_64.rpm                      |  82 kB   00:00     
(135/191): mesa-libgbm-17.0.1-6.20170307.el7.x86_64.rpm    |  32 kB   00:00     
(136/191): numpy-f2py-1.7.1-11.el7.x86_64.rpm              | 205 kB   00:00     
(137/191): pango-1.40.4-1.el7.x86_64.rpm                   | 275 kB   00:00     
(138/191): mesa-libglapi-17.0.1-6.20170307.el7.x86_64.rpm  |  41 kB   00:00     
(139/191): pcre-devel-8.32-17.el7.x86_64.rpm               | 480 kB   00:00     
(140/191): pixman-devel-0.34.0-1.el7.x86_64.rpm            |  20 kB   00:00     
(141/191): mesa-libGL-devel-17.0.1-6.20170307.el7.x86_64.r | 151 kB   00:00     
(142/191): numpy-1.7.1-11.el7.x86_64.rpm                   | 2.8 MB   00:00     
(143/191): pixman-0.34.0-1.el7.x86_64.rpm                  | 248 kB   00:00     
(144/191): java-1.8.0-openjdk-headless-1.8.0.161-0.b14.el7 |  32 MB   00:03     
(145/191): postgresql-devel-9.2.23-3.el7_4.x86_64.rpm      | 952 kB   00:00     
(146/191): postgresql-9.2.23-3.el7_4.x86_64.rpm            | 3.0 MB   00:00     
(147/191): postgresql-libs-9.2.23-3.el7_4.x86_64.rpm       | 234 kB   00:00     
(148/191): pycairo-1.8.10-8.el7.x86_64.rpm                 | 157 kB   00:00     
(149/191): procps-ng-3.3.10-16.el7.x86_64.rpm              | 289 kB   00:00     
(150/191): python-2.7.5-58.el7.x86_64.rpm                  |  91 kB   00:00     
(151/191): python-backports-1.0-8.el7.x86_64.rpm           | 5.8 kB   00:00     
(152/191): python-backports-ssl_match_hostname-3.4.0.2-4.e |  12 kB   00:00     
(153/191): pygobject2-2.28.6-11.el7.x86_64.rpm             | 226 kB   00:00     
(154/191): python-dateutil-1.5-7.el7.noarch.rpm            |  85 kB   00:00     
(155/191): pyparsing-1.5.6-9.el7.noarch.rpm                |  94 kB   00:00     
(156/191): python-javapackages-3.4.1-11.el7.noarch.rpm     |  31 kB   00:00     
(157/191): pygtk2-2.24.0-9.el7.x86_64.rpm                  | 914 kB   00:00     
(158/191): python-nose-1.3.7-1.el7.noarch.rpm              | 276 kB   00:00     
(159/191): python-devel-2.7.5-58.el7.x86_64.rpm            | 395 kB   00:00     
(160/191): python-lxml-3.2.1-4.el7.x86_64.rpm              | 758 kB   00:00     
(161/191): python-Bottleneck-0.7.0-1.el7.x86_64.rpm        | 864 kB   00:00     
(162/191): python-pillow-2.0.0-19.gitd1c6db8.el7.x86_64.rp | 438 kB   00:00     
(163/191): python-setuptools-0.9.8-7.el7.noarch.rpm        | 397 kB   00:00     
(164/191): python-six-1.9.0-2.el7.noarch.rpm               |  29 kB   00:00     
(165/191): python-pandas-0.17.1-1.el7.x86_64.rpm           | 6.6 MB   00:00     
(166/191): python-tables-3.2.0-1.el7.x86_64.rpm            | 1.2 MB   00:00     
(167/191): python2-numexpr-2.5.2-2.el7.x86_64.rpm          | 180 kB   00:00     
(168/191): pytz-2016.10-2.el7.noarch.rpm                   |  46 kB   00:00     
(169/191): python-matplotlib-1.2.0-15.el7.x86_64.rpm       |  26 MB   00:01     
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  Verifying  : libICE-1.0.9-9.el7.x86_64                                 53/191 
  Verifying  : giflib-4.1.6-9.el7.x86_64                                 54/191 
  Verifying  : libwebp-0.3.0-7.el7.x86_64                                55/191 
  Verifying  : dracut-033-502.el7_4.1.x86_64                             56/191 
  Verifying  : xorg-x11-proto-devel-7.7-20.el7.noarch                    57/191 
  Verifying  : libXfont-1.5.2-1.el7.x86_64                               58/191 
  Verifying  : cmake-2.8.12.2-2.el7.x86_64                               59/191 
  Verifying  : harfbuzz-1.3.2-1.el7.x86_64                               60/191 
  Verifying  : atlas-3.10.1-12.el7.x86_64                                61/191 
  Verifying  : libXdamage-devel-1.1.4-4.1.el7.x86_64                     62/191 
  Verifying  : mesa-libgbm-17.0.1-6.20170307.el7.x86_64                  63/191 
  Verifying  : python-Bottleneck-0.7.0-1.el7.x86_64                      64/191 
  Verifying  : libarchive-3.1.2-10.el7_2.x86_64                          65/191 
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  Verifying  : pytz-2016.10-2.el7.noarch                                 68/191 
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  Verifying  : libXtst-1.2.3-1.el7.x86_64                                71/191 
  Verifying  : boost-iostreams-1.53.0-27.el7.x86_64                      72/191 
  Verifying  : 2:texlive-kpathsea-lib-2012-38.20130427_r30134.el7.x86    73/191 
  Verifying  : inchi-1.0.4-4.el7.x86_64                                  74/191 
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  Verifying  : libaec-1.0.2-1.el7.x86_64                                 81/191 
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  Verifying  : 1:java-1.8.0-openjdk-headless-1.8.0.161-0.b14.el7_4.x8    92/191 
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  Verifying  : 7:device-mapper-libs-1.02.140-8.el7.x86_64                94/191 
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  Verifying  : libXfixes-5.0.3-1.el7.x86_64                              96/191 
  Verifying  : boost-atomic-1.53.0-27.el7.x86_64                         97/191 
  Verifying  : libXau-devel-1.0.8-2.1.el7.x86_64                         98/191 
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  Verifying  : libtiff-4.0.3-27.el7_3.x86_64                            101/191 
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  Verifying  : libjpeg-turbo-1.2.90-5.el7.x86_64                        103/191 
  Verifying  : boost-regex-1.53.0-27.el7.x86_64                         104/191 
  Verifying  : atk-2.22.0-3.el7.x86_64                                  105/191 
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  Verifying  : easymock2-2.5.2-12.el7.noarch                            107/191 
  Verifying  : pcre-devel-8.32-17.el7.x86_64                            108/191 
  Verifying  : libquadmath-4.8.5-16.el7_4.2.x86_64                      109/191 
  Verifying  : lzo-2.06-8.el7.x86_64                                    110/191 
  Verifying  : m4-1.4.16-10.el7.x86_64                                  111/191 
  Verifying  : libpciaccess-0.13.4-3.1.el7_4.x86_64                     112/191 
  Verifying  : fontpackages-filesystem-1.44-8.el7.noarch                113/191 
  Verifying  : ttmkfdir-3.0.9-42.el7.x86_64                             114/191 
  Verifying  : hicolor-icon-theme-0.12-7.el7.noarch                     115/191 
  Verifying  : snappy-1.1.0-3.el7.x86_64                                116/191 
  Verifying  : SDL-1.2.15-14.el7.x86_64                                 117/191 
  Verifying  : python-dateutil-1.5-7.el7.noarch                         118/191 
  Verifying  : qrencode-libs-3.4.1-3.el7.x86_64                         119/191 
  Verifying  : jasper-libs-1.900.1-31.el7.x86_64                        120/191 
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  Verifying  : pygobject2-2.28.6-11.el7.x86_64                          122/191 
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  Verifying  : boost-filesystem-1.53.0-27.el7.x86_64                    124/191 
  Verifying  : acl-2.2.51-12.el7.x86_64                                 125/191 
  Verifying  : gl-manpages-1.1-7.20130122.el7.noarch                    126/191 
  Verifying  : mesa-libEGL-17.0.1-6.20170307.el7.x86_64                 127/191 
  Verifying  : mesa-libGL-devel-17.0.1-6.20170307.el7.x86_64            128/191 
  Verifying  : 2:texlive-kpathsea-bin-svn27347.0-38.20130427_r30134.e   129/191 
  Verifying  : libxslt-1.1.28-5.el7.x86_64                              130/191 
  Verifying  : boost-wave-1.53.0-27.el7.x86_64                          131/191 
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  Verifying  : kpartx-0.4.9-111.el7_4.2.x86_64                          134/191 
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  Verifying  : lksctp-tools-1.0.17-2.el7.x86_64                         141/191 
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  Verifying  : python-2.7.5-58.el7.x86_64                               143/191 
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  Verifying  : copy-jdk-configs-2.2-5.el7_4.noarch                      147/191 
  Verifying  : 1:java-1.8.0-openjdk-1.8.0.161-0.b14.el7_4.x86_64        148/191 
  Verifying  : blas-3.4.2-8.el7.x86_64                                  149/191 
  Verifying  : boost-context-1.53.0-27.el7.x86_64                       150/191 
  Verifying  : libXinerama-1.1.3-2.1.el7.x86_64                         151/191 
  Verifying  : kmod-libs-20-15.el7_4.7.x86_64                           152/191 
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  Verifying  : 1:numpy-1.7.1-11.el7.x86_64                              156/191 
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  Verifying  : freetype-2.4.11-15.el7.x86_64                            158/191 
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  Verifying  : python-nose-1.3.7-1.el7.noarch                           162/191 
  Verifying  : libXxf86vm-devel-1.1.4-1.el7.x86_64                      163/191 
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  Verifying  : python-setuptools-0.9.8-7.el7.noarch                     165/191 
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  Verifying  : expat-devel-2.1.0-10.el7_3.x86_64                        168/191 
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  Verifying  : libXcursor-1.1.14-8.el7.x86_64                           176/191 
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  Verifying  : python-pandas-0.17.1-1.el7.x86_64                        178/191 
  Verifying  : boost-1.53.0-27.el7.x86_64                               179/191 
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  Verifying  : systemd-219-42.el7_4.10.x86_64                           182/191 
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  Verifying  : libfontenc-1.1.3-3.el7.x86_64                            190/191 
  Verifying  : boost-python-1.53.0-27.el7.x86_64                        191/191 

Installed:
  bison.x86_64 0:3.0.4-1.el7                                                    
  boost-devel.x86_64 0:1.53.0-27.el7                                            
  cairo-devel.x86_64 0:1.14.8-2.el7                                             
  chrpath.x86_64 0:0.16-0.el7                                                   
  cmake.x86_64 0:2.8.12.2-2.el7                                                 
  eigen3-devel.noarch 0:3.2.5-2.el7                                             
  flex.x86_64 0:2.5.37-3.el7                                                    
  inchi-devel.x86_64 0:1.0.4-4.el7                                              
  java-1.8.0-openjdk-devel.x86_64 1:1.8.0.161-0.b14.el7_4                       
  junit.noarch 0:4.11-8.el7                                                     
  numpy.x86_64 1:1.7.1-11.el7                                                   
  postgresql.x86_64 0:9.2.23-3.el7_4                                            
  postgresql-devel.x86_64 0:9.2.23-3.el7_4                                      
  pycairo.x86_64 0:1.8.10-8.el7                                                 
  python-devel.x86_64 0:2.7.5-58.el7                                            
  python-pandas.x86_64 0:0.17.1-1.el7                                           
  python-pillow.x86_64 0:2.0.0-19.gitd1c6db8.el7                                
  swig.x86_64 0:2.0.10-5.el7                                                    
  xorg-x11-fonts-Type1.noarch 0:7.5-9.el7                                       

Dependency Installed:
  SDL.x86_64 0:1.2.15-14.el7                                                    
  acl.x86_64 0:2.2.51-12.el7                                                    
  agg.x86_64 0:2.5-18.el7                                                       
  alsa-lib.x86_64 0:1.1.3-3.el7                                                 
  atk.x86_64 0:2.22.0-3.el7                                                     
  atlas.x86_64 0:3.10.1-12.el7                                                  
  avahi-libs.x86_64 0:0.6.31-17.el7                                             
  blas.x86_64 0:3.4.2-8.el7                                                     
  blosc.x86_64 0:1.6.1-1.el7                                                    
  boost.x86_64 0:1.53.0-27.el7                                                  
  boost-atomic.x86_64 0:1.53.0-27.el7                                           
  boost-chrono.x86_64 0:1.53.0-27.el7                                           
  boost-context.x86_64 0:1.53.0-27.el7                                          
  boost-date-time.x86_64 0:1.53.0-27.el7                                        
  boost-filesystem.x86_64 0:1.53.0-27.el7                                       
  boost-graph.x86_64 0:1.53.0-27.el7                                            
  boost-iostreams.x86_64 0:1.53.0-27.el7                                        
  boost-locale.x86_64 0:1.53.0-27.el7                                           
  boost-math.x86_64 0:1.53.0-27.el7                                             
  boost-program-options.x86_64 0:1.53.0-27.el7                                  
  boost-python.x86_64 0:1.53.0-27.el7                                           
  boost-random.x86_64 0:1.53.0-27.el7                                           
  boost-regex.x86_64 0:1.53.0-27.el7                                            
  boost-serialization.x86_64 0:1.53.0-27.el7                                    
  boost-signals.x86_64 0:1.53.0-27.el7                                          
  boost-system.x86_64 0:1.53.0-27.el7                                           
  boost-test.x86_64 0:1.53.0-27.el7                                             
  boost-thread.x86_64 0:1.53.0-27.el7                                           
  boost-timer.x86_64 0:1.53.0-27.el7                                            
  boost-wave.x86_64 0:1.53.0-27.el7                                             
  cairo.x86_64 0:1.14.8-2.el7                                                   
  copy-jdk-configs.noarch 0:2.2-5.el7_4                                         
  cryptsetup-libs.x86_64 0:1.7.4-3.el7_4.1                                      
  cups-libs.x86_64 1:1.6.3-29.el7                                               
  dbus.x86_64 1:1.6.12-17.el7                                                   
  dbus-libs.x86_64 1:1.6.12-17.el7                                              
  dejavu-fonts-common.noarch 0:2.33-6.el7                                       
  dejavu-sans-fonts.noarch 0:2.33-6.el7                                         
  device-mapper.x86_64 7:1.02.140-8.el7                                         
  device-mapper-libs.x86_64 7:1.02.140-8.el7                                    
  dracut.x86_64 0:033-502.el7_4.1                                               
  easymock2.noarch 0:2.5.2-12.el7                                               
  expat-devel.x86_64 0:2.1.0-10.el7_3                                           
  fontconfig.x86_64 0:2.10.95-11.el7                                            
  fontconfig-devel.x86_64 0:2.10.95-11.el7                                      
  fontpackages-filesystem.noarch 0:1.44-8.el7                                   
  freetype.x86_64 0:2.4.11-15.el7                                               
  freetype-devel.x86_64 0:2.4.11-15.el7                                         
  gd.x86_64 0:2.0.35-26.el7                                                     
  gdk-pixbuf2.x86_64 0:2.36.5-1.el7                                             
  giflib.x86_64 0:4.1.6-9.el7                                                   
  gl-manpages.noarch 0:1.1-7.20130122.el7                                       
  glib2-devel.x86_64 0:2.50.3-3.el7                                             
  graphite2.x86_64 0:1.3.10-1.el7_3                                             
  gtk-update-icon-cache.x86_64 0:3.22.10-5.el7_4                                
  gtk2.x86_64 0:2.24.31-1.el7                                                   
  hamcrest.noarch 0:1.3-6.el7                                                   
  hardlink.x86_64 1:1.0-19.el7                                                  
  harfbuzz.x86_64 0:1.3.2-1.el7                                                 
  hdf5.x86_64 0:1.8.12-10.el7                                                   
  hicolor-icon-theme.noarch 0:0.12-7.el7                                        
  hwdata.x86_64 0:0.252-8.6.el7                                                 
  inchi.x86_64 0:1.0.4-4.el7                                                    
  jasper-libs.x86_64 0:1.900.1-31.el7                                           
  java-1.8.0-openjdk.x86_64 1:1.8.0.161-0.b14.el7_4                             
  java-1.8.0-openjdk-headless.x86_64 1:1.8.0.161-0.b14.el7_4                    
  javapackages-tools.noarch 0:3.4.1-11.el7                                      
  jbigkit-libs.x86_64 0:2.0-11.el7                                              
  kmod.x86_64 0:20-15.el7_4.7                                                   
  kmod-libs.x86_64 0:20-15.el7_4.7                                              
  kpartx.x86_64 0:0.4.9-111.el7_4.2                                             
  lapack.x86_64 0:3.4.2-8.el7                                                   
  libICE.x86_64 0:1.0.9-9.el7                                                   
  libSM.x86_64 0:1.2.2-2.el7                                                    
  libX11.x86_64 0:1.6.5-1.el7                                                   
  libX11-common.noarch 0:1.6.5-1.el7                                            
  libX11-devel.x86_64 0:1.6.5-1.el7                                             
  libXau.x86_64 0:1.0.8-2.1.el7                                                 
  libXau-devel.x86_64 0:1.0.8-2.1.el7                                           
  libXcomposite.x86_64 0:0.4.4-4.1.el7                                          
  libXcursor.x86_64 0:1.1.14-8.el7                                              
  libXdamage.x86_64 0:1.1.4-4.1.el7                                             
  libXdamage-devel.x86_64 0:1.1.4-4.1.el7                                       
  libXext.x86_64 0:1.3.3-3.el7                                                  
  libXext-devel.x86_64 0:1.3.3-3.el7                                            
  libXfixes.x86_64 0:5.0.3-1.el7                                                
  libXfixes-devel.x86_64 0:5.0.3-1.el7                                          
  libXfont.x86_64 0:1.5.2-1.el7                                                 
  libXft.x86_64 0:2.3.2-2.el7                                                   
  libXi.x86_64 0:1.7.9-1.el7                                                    
  libXinerama.x86_64 0:1.1.3-2.1.el7                                            
  libXpm.x86_64 0:3.5.12-1.el7                                                  
  libXrandr.x86_64 0:1.5.1-2.el7                                                
  libXrender.x86_64 0:0.9.10-1.el7                                              
  libXrender-devel.x86_64 0:0.9.10-1.el7                                        
  libXtst.x86_64 0:1.2.3-1.el7                                                  
  libXxf86vm.x86_64 0:1.1.4-1.el7                                               
  libXxf86vm-devel.x86_64 0:1.1.4-1.el7                                         
  libaec.x86_64 0:1.0.2-1.el7                                                   
  libarchive.x86_64 0:3.1.2-10.el7_2                                            
  libdrm.x86_64 0:2.4.74-1.el7                                                  
  libdrm-devel.x86_64 0:2.4.74-1.el7                                            
  libfontenc.x86_64 0:1.1.3-3.el7                                               
  libgfortran.x86_64 0:4.8.5-16.el7_4.2                                         
  libicu.x86_64 0:50.1.2-15.el7                                                 
  libjpeg-turbo.x86_64 0:1.2.90-5.el7                                           
  libpciaccess.x86_64 0:0.13.4-3.1.el7_4                                        
  libpng.x86_64 2:1.5.13-7.el7_2                                                
  libpng-devel.x86_64 2:1.5.13-7.el7_2                                          
  libquadmath.x86_64 0:4.8.5-16.el7_4.2                                         
  libthai.x86_64 0:0.1.14-9.el7                                                 
  libtiff.x86_64 0:4.0.3-27.el7_3                                               
  libwebp.x86_64 0:0.3.0-7.el7                                                  
  libxcb.x86_64 0:1.12-1.el7                                                    
  libxcb-devel.x86_64 0:1.12-1.el7                                              
  libxshmfence.x86_64 0:1.2-1.el7                                               
  libxslt.x86_64 0:1.1.28-5.el7                                                 
  lksctp-tools.x86_64 0:1.0.17-2.el7                                            
  lyx-fonts.noarch 0:2.2.3-1.el7                                                
  lz4.x86_64 0:1.7.3-1.el7                                                      
  lzo.x86_64 0:2.06-8.el7                                                       
  m4.x86_64 0:1.4.16-10.el7                                                     
  mesa-libEGL.x86_64 0:17.0.1-6.20170307.el7                                    
  mesa-libEGL-devel.x86_64 0:17.0.1-6.20170307.el7                              
  mesa-libGL.x86_64 0:17.0.1-6.20170307.el7                                     
  mesa-libGL-devel.x86_64 0:17.0.1-6.20170307.el7                               
  mesa-libgbm.x86_64 0:17.0.1-6.20170307.el7                                    
  mesa-libglapi.x86_64 0:17.0.1-6.20170307.el7                                  
  numpy-f2py.x86_64 1:1.7.1-11.el7                                              
  pango.x86_64 0:1.40.4-1.el7                                                   
  pcre-devel.x86_64 0:8.32-17.el7                                               
  pixman.x86_64 0:0.34.0-1.el7                                                  
  pixman-devel.x86_64 0:0.34.0-1.el7                                            
  postgresql-libs.x86_64 0:9.2.23-3.el7_4                                       
  procps-ng.x86_64 0:3.3.10-16.el7                                              
  pygobject2.x86_64 0:2.28.6-11.el7                                             
  pygtk2.x86_64 0:2.24.0-9.el7                                                  
  pyparsing.noarch 0:1.5.6-9.el7                                                
  python.x86_64 0:2.7.5-58.el7                                                  
  python-Bottleneck.x86_64 0:0.7.0-1.el7                                        
  python-backports.x86_64 0:1.0-8.el7                                           
  python-backports-ssl_match_hostname.noarch 0:3.4.0.2-4.el7                    
  python-dateutil.noarch 0:1.5-7.el7                                            
  python-javapackages.noarch 0:3.4.1-11.el7                                     
  python-lxml.x86_64 0:3.2.1-4.el7                                              
  python-matplotlib.x86_64 0:1.2.0-15.el7                                       
  python-nose.noarch 0:1.3.7-1.el7                                              
  python-setuptools.noarch 0:0.9.8-7.el7                                        
  python-six.noarch 0:1.9.0-2.el7                                               
  python-tables.x86_64 0:3.2.0-1.el7                                            
  python2-numexpr.x86_64 0:2.5.2-2.el7                                          
  pytz.noarch 0:2016.10-2.el7                                                   
  qdox.noarch 0:1.12.1-10.el7                                                   
  qrencode-libs.x86_64 0:3.4.1-3.el7                                            
  scipy.x86_64 0:0.12.1-3.el7                                                   
  snappy.x86_64 0:1.1.0-3.el7                                                   
  stix-fonts.noarch 0:1.1.0-5.el7                                               
  suitesparse.x86_64 0:4.0.2-10.el7                                             
  systemd.x86_64 0:219-42.el7_4.10                                              
  t1lib.x86_64 0:5.1.2-14.el7                                                   
  tbb.x86_64 0:4.1-9.20130314.el7                                               
  texlive-base.noarch 2:2012-38.20130427_r30134.el7                             
  texlive-dvipng.noarch 2:svn26689.1.14-38.el7                                  
  texlive-dvipng-bin.x86_64 2:svn26509.0-38.20130427_r30134.el7                 
  texlive-kpathsea.noarch 2:svn28792.0-38.el7                                   
  texlive-kpathsea-bin.x86_64 2:svn27347.0-38.20130427_r30134.el7               
  texlive-kpathsea-lib.x86_64 2:2012-38.20130427_r30134.el7                     
  ttmkfdir.x86_64 0:3.0.9-42.el7                                                
  tzdata-java.noarch 0:2018d-1.el7                                              
  xorg-x11-font-utils.x86_64 1:7.5-20.el7                                       
  xorg-x11-proto-devel.noarch 0:7.7-20.el7                                      
  zlib-devel.x86_64 0:1.2.7-17.el7                                              

Complete!
Finish: build setup for rdkit-2017.09.3-2.el7.centos.src.rpm
Start: rpmbuild rdkit-2017.09.3-2.el7.centos.src.rpm
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.eMVAER
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf rdkit-Release_2017_09_3
+ /usr/bin/mkdir -p rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
+ /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2017_09_3.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mv rdkit-Release_2017_09_3 python2
+ pushd python2
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ echo 'Patch #1 (rdkit-2015.03-use_cairo_backend_on_tests.patch):'
Patch #1 (rdkit-2015.03-use_cairo_backend_on_tests.patch):
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2015.03-use_cairo_backend_on_tests.patch
+ /usr/bin/patch -p1 --fuzz=0
patching file rdkit/Chem/Draw/UnitTestSimilarityMaps.py
Hunk #1 succeeded at 169 (offset 71 lines).
Patch #2 (rdkit-2014.09-do_not_install_sping.patch):
+ echo 'Patch #2 (rdkit-2014.09-do_not_install_sping.patch):'
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2014.09-do_not_install_sping.patch
+ /usr/bin/patch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 191 (offset 42 lines).
Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch):
+ echo 'Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch):'
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2014.09-fix_cmake_files_path.patch
+ /usr/bin/patch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 115 (offset 34 lines).
Hunk #2 succeeded at 129 (offset 34 lines).
Patch #7 (rdkit-2015.03-dont_install_contrib.patch):
+ echo 'Patch #7 (rdkit-2015.03-dont_install_contrib.patch):'
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2015.03-dont_install_contrib.patch
+ /usr/bin/patch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 333 (offset 101 lines).
+ rm -rf rdkit/sping
+ cp -pr license.txt ReleaseNotes.md ../
~/build/BUILD/rdkit-Release_2017_09_3
+ popd
+ find python2 -name '*.py'
+ xargs sed -i '1s|^#!.*|#!/usr/bin/python2|'
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.toYinQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ export 'CXXFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed'
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed'
+ pushd python2
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro '
+ export LDFLAGS
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=ON -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 .
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found INCHI: /usr/lib64/libinchi.so  
-- Found PythonInterp: /usr/bin/python2 (found version "2.7.5") 
-- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.5") 
-- Boost version: 1.53.0
-- Found the following Boost libraries:
--   python
Python Install directory /usr/lib64/python2.7/site-packages
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") 
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.53.0
-- Found the following Boost libraries:
--   thread
--   system
-- Boost version: 1.53.0
-- Found the following Boost libraries:
--   serialization
-- Found PostgreSQL: /usr/lib64 (found version "9.2.23") 
-- PostgreSQL include dirs: /usr/include;/usr/include/pgsql/server
-- PostgreSQL library dirs: /usr/lib64
-- PostgreSQL libraries:    pq
== Using strict rotor definition
-- Found BISON: /usr/bin/bison  
-- Found FLEX: /usr/bin/flex  
== Done updating pains files
== Updating Filters.cpp from pains file
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") 
-- checking for module 'cairo'
--   found cairo, version 1.14.8
-- Found Cairo: /usr/include/cairo  
-- Boost version: 1.53.0
-- Found the following Boost libraries:
--   regex

=====================================================================
After building, check
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/pgsql_install.sh
for correctness of installation paths. If everything is OK, gain 
administrator privileges, stop the PostgreSQL service, run
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/pgsql_install.sh
to install the PostgreSQL RDKit cartridge, then start again
the PostgreSQL service
=====================================================================

-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ make -j2
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2017_09_3/python2 -B/builddir/build/BUILD/rdkit-Release_2017_09_3/python2 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles/progress.marks
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/inchi.py
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Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral && /usr/bin/c++   -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/types.cpp
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Linking CXX executable testMatrices
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Linking CXX executable testQuery
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp
Linking CXX executable testMatCalc
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Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/DistPicker.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/MaxMinPicker.cpp
Linking CXX shared module ../../../rdkit/rdBase.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdBase.so -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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Scanning dependencies of target Clustering
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/HierarchicalClusterPicker.cpp
Linking CXX shared library ../../lib/libRDKitSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2017.09.3 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so
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Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/testChemicalFeatures.cpp
Linking CXX shared library ../../../lib/libRDKitInfoTheory.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2017.09.3 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2017.09.3 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
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Linking CXX executable testChemicalFeatures
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Transform2D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Transform3D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/UniformGrid3D.cpp
Linking CXX executable testDataStructs
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o  -o testDataStructs -rdynamic ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/GridUtils.cpp
Linking CXX executable testFPB
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFPB.dir/testFPB.cpp.o  -o testFPB -rdynamic ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/DataStructs.cpp
Linking CXX executable testMultiFPB
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o  -o testMultiFPB -rdynamic ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testGrid.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp
Linking CXX executable testGrid
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testGrid.dir/testGrid.cpp.o  -o testGrid -rdynamic ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testTransforms.cpp
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[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/SparseIntVect.cpp
Linking CXX executable testTransforms
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testTransforms.dir/testTransforms.cpp.o  -o testTransforms -rdynamic ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/Point.cpp
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[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
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[ 14%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment && /usr/bin/c++   -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/AlignPoints.cpp
Linking CXX shared library ../../../lib/libRDKitAlignment.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2017.09.3 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/c++   -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/BFGSOpt.cpp
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[ 15%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/c++   -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/LinearSearch.cpp
Linking CXX shared library ../../../lib/libRDKitOptimizer.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2017.09.3 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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Linking CXX executable testSimDivPickers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1
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Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so
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Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
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Linking CXX executable testAlignment
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/testOptimizer.cpp
Linking CXX executable testOptimizer
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Linking CXX shared library ../../lib/libRDKitGraphMol.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so
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[ 28%] [FLEX][SmartsL] Building scanner with flex 2.5.37
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Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/SubstructMatch.cpp
[ 29%] [BISON][SmilesY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -o /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -pyysmarts_ -d -o /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy
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[ 29%] [FLEX][SmilesL] Building scanner with flex 2.5.37
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmiles_ -o/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.ll
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SmilesParse
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[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
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[ 30%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/SubstructUtils.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp: In function 'void SmilesParseOps::AdjustAtomChiralityFlags(RDKit::RWMol*)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:320:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if (selfPos->first != static_cast<int>((*atomIt)->getIdx())) {
                                                                 ^
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RDKitBase.h:20:0,
                 from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:10:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:323:77: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       CHECK_INVARIANT(selfPos->first == static_cast<int>((*atomIt)->getIdx()),
                                                                             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/Invariant.h:100:9: note: in definition of macro 'CHECK_INVARIANT'
   if (!(expr)) {                                                       \
         ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesWrite.cpp
Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 30%] Built target SubstructMatch
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target MolTransforms
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 30%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/c++   -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/MolTransforms.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp:599:13: warning: unused parameter 'atomToLeftIdx' [-Wunused-parameter]
 std::string getNonQueryBondSmarts(const QueryBond *qbond, int atomToLeftIdx) {
             ^
Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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Scanning dependencies of target Subgraphs
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[ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/boost-numeric-bindings    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/Subgraphs.cpp
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[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp
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[ 30%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/boost-numeric-bindings    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 52
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp
Linking CXX shared library ../../../lib/libRDKitSubgraphs.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 31%] Built target Subgraphs
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
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[ 31%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/c++   -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp
smiles.yy:38:1: warning: unused parameter 'input' [-Wunused-parameter]
 yysmiles_error( const char *input,
 ^
smiles.yy:38:1: warning: unused parameter 'branchPoints' [-Wunused-parameter]
smiles.yy:38:1: warning: unused parameter 'scanner' [-Wunused-parameter]
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 43
[ 32%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/c++   -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/GasteigerParams.cpp
smarts.yy:25:1: warning: unused parameter 'input' [-Wunused-parameter]
 yysmarts_error( const char *input,
 ^
smarts.yy:25:1: warning: unused parameter 'ms' [-Wunused-parameter]
smarts.yy:25:1: warning: unused parameter 'scanner' [-Wunused-parameter]
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  43
[ 32%] Built target PartialCharges
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target MolAlign
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 32%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/c++   -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/AlignMolecules.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'yy_buffer_state* yysmiles__scan_bytes(const char*, yy_size_t, yyscan_t)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2742:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for ( i = 0; i < _yybytes_len; ++i )
                   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: At global scope:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2763:13: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner)
             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:3095:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 void *yysmiles_alloc (yy_size_t  size , yyscan_t yyscanner)
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:3100:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 void *yysmiles_realloc  (void * ptr, yy_size_t  size , yyscan_t yyscanner)
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:3112:6: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 void yysmiles_free (void * ptr , yyscan_t yyscanner)
      ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 32%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/c++   -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: In function 'yy_buffer_state* yysmarts__scan_bytes(const char*, yy_size_t, yyscan_t)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2414:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for ( i = 0; i < _yybytes_len; ++i )
                   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: At global scope:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2475:13: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner)
             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2807:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 void *yysmarts_alloc (yy_size_t  size , yyscan_t yyscanner)
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2812:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 void *yysmarts_realloc  (void * ptr, yy_size_t  size , yyscan_t yyscanner)
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2824:6: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 void yysmarts_free (void * ptr , yyscan_t yyscanner)
      ^
Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  50 51 52
[ 32%] Built target SmilesParse
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target rdPartialCharges
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 32%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
Linking CXX shared library ../../../lib/libRDKitMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2017.09.3 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 32%] Built target MolAlign
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolTransforms
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 32%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdPartialCharges.so -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target MolChemicalFeatures
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[ 32%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolTransforms.so -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
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[ 33%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
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[ 34%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
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make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/c++   -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
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Linking CXX shared library ../../../lib/libRDKitMolCatalog.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2017.09.3 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
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[ 36%] [FLEX][SlnL] Building scanner with flex 2.5.37
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[ 36%] [BISON][SlnY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/bison -pyysln_ -d -o /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/sln.tab.cpp sln.yy
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SLNParse
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/SLNParse.cpp
Linking CXX shared library ../../../lib/libRDKitTrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2017.09.3 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2017.09.3 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
Scanning dependencies of target rdqueries
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rdqueries.cpp
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[ 37%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/SLNAttribs.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 84
[ 38%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/Queries.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 38%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/sln.tab.cpp
sln.yy:54:0: warning: "YYDEBUG" redefined [enabled by default]
 #define YYDEBUG 1
 ^
In file included from sln.yy:50:0:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/sln.tab.hpp:37:0: note: this is the location of the previous definition
 # define YYDEBUG 0
 ^
sln.yy:57:1: warning: unused parameter 'ms' [-Wunused-parameter]
 yysln_error( const char *input,
 ^
sln.yy:57:1: warning: unused parameter 'doQ' [-Wunused-parameter]
sln.yy:57:1: warning: unused parameter 'scanner' [-Wunused-parameter]
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 38%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp
Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdqueries.so -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/Trajectory.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'yy_buffer_state* yysln__scan_bytes(const char*, yy_size_t, yyscan_t)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2526:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  for ( i = 0; i < _yybytes_len; ++i )
                   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp: At global scope:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2587:13: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner)
             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2919:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 void *yysln_alloc (yy_size_t  size , yyscan_t yyscanner)
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2924:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 void *yysln_realloc  (void * ptr, yy_size_t  size , yyscan_t yyscanner)
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2936:6: warning: unused parameter 'yyscanner' [-Wunused-parameter]
 void yysln_free (void * ptr , yyscan_t yyscanner)
      ^
Linking CXX shared library ../../../lib/libRDKitSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2017.09.3 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
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Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so
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Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so
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Linking CXX shared library ../../../lib/libRDKitDepictor.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2017.09.3 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceFieldHelpers
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SDMolSupplier.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SDWriter.cpp
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[ 41%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
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[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
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Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolIterTest
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[ 42%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/itertest.cpp
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[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SmilesWriter.cpp
Linking CXX executable graphmolIterTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolIterTest.dir/itertest.cpp.o  -o graphmolIterTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 42%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMemTest1
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/memtest1.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
Linking CXX executable graphmolMemTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o  -o graphmolMemTest1 -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolcpTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/cptest.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TDTWriter.cpp
Linking CXX executable graphmolcpTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolcpTest.dir/cptest.cpp.o  -o graphmolcpTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 43%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolqueryTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 44%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/querytest.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 19
[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TplFileParser.cpp
Linking CXX executable graphmolqueryTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o  -o graphmolqueryTest -rdynamic ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 45%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestCanon
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 45%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testCanon.cpp
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[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TplFileWriter.cpp
Linking CXX executable graphmoltestCanon
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o  -o graphmoltestCanon -rdynamic ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 45%] Built target graphmoltestCanon
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemTransforms
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
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In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/PDBParser.cpp:24:0:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
 static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
                     ^
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Linking CXX shared library ../../../lib/libRDKitChemTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smatest.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp:10:0:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
 static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
                     ^
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SequenceParsers.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SequenceWriters.cpp
Linking CXX executable smaTest1
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Linking CXX shared library ../../../lib/libRDKitFileParsers.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 49%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target Fingerprints
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 22
[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/Fingerprints.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 50%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 50%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 50%] Built target FilterCatalog
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemTransforms
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[ 50%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/AtomPairs.cpp
Linking CXX executable testChemTransforms
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o  -o testChemTransforms -rdynamic ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 50%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs1
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 98
[ 51%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/boost-numeric-bindings    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/test1.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 23
[ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/MACCS.cpp
Linking CXX shared library ../../../lib/libRDKitFingerprints.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2017.09.3 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 52%] Built target Fingerprints
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/boost-numeric-bindings    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/test2.cpp
Linking CXX executable testSubgraphs1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubgraphs1.dir/test1.cpp.o  -o testSubgraphs1 -rdynamic ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
Scanning dependencies of target filterCatalogTest
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[ 52%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
Linking CXX executable testSubgraphs2
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubgraphs2.dir/test2.cpp.o  -o testSubgraphs2 -rdynamic ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfiltercatalog
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 53%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
Linking CXX executable filterCatalogTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o  -o filterCatalogTest -rdynamic ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 53%] Built target filterCatalogTest
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FragCatalog
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[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 54%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatParams.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 31
[ 55%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
Linking CXX shared library ../../../lib/libRDKitFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2017.09.3 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2017.09.3 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  30 31
[ 55%] Built target FragCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testFingerprints
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/test1.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdfiltercatalog.so -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_serialization-mt -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  76
[ 55%] Built target rdfiltercatalog
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target testPartialCharges
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 55%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/test1.cpp
Linking CXX executable testPartialCharges
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testPartialCharges.dir/test1.cpp.o  -o testPartialCharges -rdynamic ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 55%] Built target testPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolTransforms
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 55%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/test1.cpp
Linking CXX executable testMolTransforms
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolTransforms.dir/test1.cpp.o  -o testMolTransforms -rdynamic ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 55%] Built target testMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceFieldHelpers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 66
[ 56%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
Linking CXX executable testFingerprints
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFingerprints.dir/test1.cpp.o  -o testFingerprints -rdynamic ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 56%] Built target testFingerprints
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testFeatures
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 56%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
Linking CXX executable testFeatures
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFeatures.dir/testFeatures.cpp.o  -o testFeatures -rdynamic ../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 56%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolChemicalFeatures
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 56%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdForceFieldHelpers.so -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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Scanning dependencies of target testShapeHelpers
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[ 56%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 69
[ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
Linking CXX executable testShapeHelpers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o  -o testShapeHelpers -rdynamic ../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 57%] Built target testShapeHelpers
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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Scanning dependencies of target rdShapeHelpers
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdShapeHelpers.so -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
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[ 57%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/test1.cpp
Linking CXX executable testMolCatalog
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolCatalog.dir/test1.cpp.o  -o testMolCatalog -rdynamic ../../../lib/libRDKitMolCatalog.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolCatalog
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[ 57%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
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[ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolChemicalFeatures.so -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 57%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCS
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/FMCS.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolCatalog.so -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 58%] Built target rdMolCatalog
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target MMPA
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[ 58%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/c++   -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/MMPA.cpp
Linking CXX shared library ../../../lib/libRDKitMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2017.09.3 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2017.09.3 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 58%] Built target MMPA
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target testReducedGraphs
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[ 58%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/test1.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Seed.cpp
Linking CXX executable testReducedGraphs
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReducedGraphs.dir/test1.cpp.o  -o testReducedGraphs -rdynamic ../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 58%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target rdReducedGraphs
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 58%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdReducedGraphs.so -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 58%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target trajectoryTest
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make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 100
[ 59%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/trajectoryTest.cpp
Linking CXX executable trajectoryTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o  -o trajectoryTest -rdynamic ../../../lib/libRDKitTrajectory.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  100
[ 59%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target SubstructLibrary
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 56
[ 60%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 60%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp: In function 'std::vector<unsigned int> RDKit::{anonymous}::internalGetMatches(const RDKit::ROMol&, RDKit::MolHolderBase&, const RDKit::FPHolderBase*, unsigned int, unsigned int, bool, bool, bool, int, int)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp:150:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   if (endIdx < numThreads) numThreads = endIdx;
                ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp: In function 'int RDKit::{anonymous}::internalMatchCounter(const RDKit::ROMol&, RDKit::MolHolderBase&, const RDKit::FPHolderBase*, unsigned int, unsigned int, bool, bool, bool, int)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp:203:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   if (endIdx < numThreads) numThreads = endIdx;
                ^
Linking CXX shared library ../../../lib/libRDKitFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2017.09.3 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  15
[ 60%] Built target FMCS
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 60%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/test.cpp
Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  56
[ 60%] Built target SubstructLibrary
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSLNParse
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 60%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdSLNParse.so -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libRDKitSLNParse.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt -lboost_regex-mt ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 60%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
Scanning dependencies of target rdchem
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 60%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rdchem.cpp
Linking CXX executable testSLNParse
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSLNParse.dir/test.cpp.o  -o testSLNParse -rdynamic ../../../lib/libRDKitSLNParse.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_regex-mt ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 60%] Built target testSLNParse
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Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o
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Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp: In function 'void RDKit::Descriptors::{anonymous}::get2DautocorrelationDesc(double*, int, const RDKit::ROMol&, std::vector<double>&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:60:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (unsigned int i = 0; i < numAtoms; i++) {
                                ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:69:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (unsigned int i = 0; i < numAtoms; i++) {
                                ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:77:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (unsigned int i = 0; i < numAtoms; i++) {
                                ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:92:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (unsigned int i = 0; i < numAtoms; ++i) {
                                  ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:93:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for (unsigned int j = i + 1; j < numAtoms; ++j) {
                                        ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 11
[ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp
Linking CXX shared module ../../../rdkit/Chem/rdinchi.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdinchi.so -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o ../../../lib/libRDKitRDInchiLib.so.1.2017.09.3 -linchi ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/USRDescriptor.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/PMI.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/PMI.cpp
Linking CXX executable testUFFForceField
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o  -o testUFFForceField -rdynamic ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeometry
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[ 69%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/DistGeomUtils.cpp
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[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp
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/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp: In function 'void RDKit::Descriptors::AUTOCORR3D(const RDKit::ROMol&, std::vector<double>&, int)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp:182:20: warning: unused variable 'conf' [-Wunused-variable]
   const Conformer& conf = mol.getConformer(confId);
                    ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/RDF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/ChiralViolationContrib.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp: In function 'void RDKit::Descriptors::{anonymous}::getRDFDesc(double*, const RDKit::ROMol&, const RDKit::Conformer&, std::vector<double>&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp:86:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < R.size(); i++) {
                              ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp:67:7: warning: unused variable 'confId' [-Wunused-variable]
   int confId = conf.getId();
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp: In function 'void RDKit::Descriptors::RDF(const RDKit::ROMol&, std::vector<double>&, int)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp:164:7: warning: unused variable 'numAtoms' [-Wunused-variable]
   int numAtoms = mol.getNumAtoms();
       ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MORSE.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp
Linking CXX shared library ../../lib/libRDKitDistGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2017.09.3 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  14
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceField
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/ForceField.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp: In function 'std::vector<double> RDKit::Descriptors::{anonymous}::prepareIState(const RDKit::ROMol&, const RDKit::Conformer&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp:59:7: warning: unused variable 'numAtoms' [-Wunused-variable]
   int numAtoms = conf.getNumAtoms();
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp:60:7: warning: unused variable 'confId' [-Wunused-variable]
   int confId = conf.getId();
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp: In function 'void RDKit::Descriptors::{anonymous}::getMORSEDesc(double*, const RDKit::ROMol&, const RDKit::Conformer&, std::vector<double>&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp:87:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < R.size(); i++) {
                              ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/GETAWAY.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/GETAWAY.cpp:119:6: warning: unused parameter 'n' [-Wunused-parameter]
 bool IsClose2(double a, double b, unsigned int n) {
      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/GETAWAY.cpp:158:6: warning: unused parameter 'n' [-Wunused-parameter]
 bool IsClose3(double a, double b, unsigned int n) {
      ^
Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdForceField.so -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeom
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 70%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/testDistGeom.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 13
[ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/WHIM.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/WHIM.cpp
Linking CXX executable testDistGeom
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o  -o testDistGeom -rdynamic ../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeom
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap && /usr/bin/c++   -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/DistGeom.cpp
Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,DistGeom.so -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Built target DistGeom
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMolOpsTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molopstest.cpp
Linking CXX shared library ../../../lib/libRDKitDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2017.09.3 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors.dir/PBF.cpp.o CMakeFiles/Descriptors.dir/PMI.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors.dir/RDF.cpp.o CMakeFiles/Descriptors.dir/MORSE.cpp.o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o CMakeFiles/Descriptors.dir/WHIM.cpp.o ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  9 10 11 12 13
[ 71%] Built target Descriptors
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolTest1
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/test1.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molopstest.cpp: In function 'void testGithub1281()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molopstest.cpp:6911:16: warning: unused variable 'm' [-Wunused-variable]
         RWMol *m = SmilesToMol(smiles);
                ^
Linking CXX executable graphmolTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolTest1.dir/test1.cpp.o  -o graphmolTest1 -rdynamic ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 71%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestChirality
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testChirality.cpp
Linking CXX executable graphmoltestChirality
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o  -o graphmoltestChirality -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 71%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPickler
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPickler.cpp
Linking CXX executable graphmolMolOpsTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o  -o graphmolMolOpsTest -rdynamic ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPicklerGlobalSetting
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 62
[ 72%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPicklerGlobalSettings.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:5: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable graphmoltestPickler
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o  -o graphmoltestPickler -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 72%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
Scanning dependencies of target hanoiTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 72%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/hanoitest.cpp
Linking CXX executable graphmoltestPicklerGlobalSetting
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o  -o graphmoltestPicklerGlobalSetting -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 72%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molBundleTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 63
[ 73%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testMolBundle.cpp
Linking CXX executable molBundleTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o  -o molBundleTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 73%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
Scanning dependencies of target resMolSupplierTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 73%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/resMolSupplierTest.cpp
Linking CXX executable hanoiTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/hanoiTest.dir/hanoitest.cpp.o  -o hanoiTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 73%] Built target hanoiTest
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target testDepictor
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 73%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/testDepictor.cpp
Linking CXX executable resMolSupplierTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o  -o resMolSupplierTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDepictor
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 74%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
Linking CXX executable testDepictor
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDepictor.dir/testDepictor.cpp.o  -o testDepictor -rdynamic ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 74%] Built target testDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
Scanning dependencies of target cxsmilesTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 75%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
Linking CXX executable cxsmilesTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o  -o cxsmilesTest -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdDepictor.so -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
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[ 75%] Built target rdDepictor
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smiTest1
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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Scanning dependencies of target fileParsersTest1
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/test.cpp
[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/test1.cpp
Linking CXX executable smiTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/smiTest1.dir/test.cpp.o  -o smiTest1 -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
Scanning dependencies of target testMol2ToMol
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMol2ToMol.cpp
Linking CXX executable fileParsersTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/fileParsersTest1.dir/test1.cpp.o  -o fileParsersTest1 -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 75%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolSupplier
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[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolSupplier.cpp
Linking CXX executable testMol2ToMol
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o  -o testMol2ToMol -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 75%] Built target testMol2ToMol
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolWriter.cpp
Linking CXX executable testMolSupplier
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o  -o testMolSupplier -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 75%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
Scanning dependencies of target testSequence
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 97
[ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testSequence.cpp
Linking CXX executable testMolWriter
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o  -o testMolWriter -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 76%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
Scanning dependencies of target testTplParser
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testTpls.cpp
Linking CXX executable testSequence
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSequence.dir/testSequence.cpp.o  -o testSequence -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  97
[ 76%] Built target testSequence
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubstructMatch
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 76%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/test1.cpp
Linking CXX executable testTplParser
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testTplParser.dir/testTpls.cpp.o  -o testTplParser -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 76%] Built target testTplParser
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemReactions
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Reaction.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/MDLParser.cpp
Linking CXX executable testSubstructMatch
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubstructMatch.dir/test1.cpp.o  -o testSubstructMatch -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 77%] Built target testSubstructMatch
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testFragCatalog
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 90
[ 78%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/test1.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 78%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/DaylightParser.cpp
Linking CXX executable testFragCatalog
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFragCatalog.dir/test1.cpp.o  -o testFragCatalog -rdynamic ../../../lib/libRDKitFragCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  90
[ 78%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfragcatalog
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionDepict.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
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[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionRunner.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdfragcatalog.so -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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Scanning dependencies of target test3D
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/test3D.dir/test3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/test3D.cpp
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[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o
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Linking CXX executable test3D
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/test3D.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/test3D.dir/test3D.cpp.o  -o test3D -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 81%] Built target test3D
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
Scanning dependencies of target testAUTOCORR2D
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:5: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testAUTOCORR2D
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o  -o testAUTOCORR2D -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 81%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake --color=
Scanning dependencies of target testAUTOCORR3D
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 86
[ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp:85:5: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp:85:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testAUTOCORR3D
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR3D.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o  -o testAUTOCORR3D -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 82%] Built target testAUTOCORR3D
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target testDescriptors
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/test.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 4
[ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
Linking CXX executable testDescriptors
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDescriptors.dir/test.cpp.o  -o testDescriptors -rdynamic ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/DependInfo.cmake --color=
Scanning dependencies of target testGETAWAY
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY.cpp:106:5: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY.cpp:106:5: warning: unused parameter 'argv' [-Wunused-parameter]
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
Linking CXX executable testGETAWAY
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGETAWAY.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o  -o testGETAWAY -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testGETAWAY
make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/DependInfo.cmake --color=
Scanning dependencies of target testMORSE
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/testMORSE.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMORSE.dir/testMORSE.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RDKitBase.h:20:0,
                 from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h:35,
                 from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h:35,
                 from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h:36,
                 from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp:32:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp: In member function 'virtual void RDKit::EvenSamplePairsStrategy::initializeStrategy(const RDKit::ChemicalReaction&, const BBS&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp:69:37: warning: comparison of unsigned expression >= 0 is always true [-Wtype-limits]
   PRECONDITION(m_numPermutations >= 0,
                                     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/Invariant.h:108:9: note: in definition of macro 'PRECONDITION'
   if (!(expr)) {                                                           \
         ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp: In function 'void testMORSE()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp:67:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i = 0; i < dmorse.size(); i++) {
                                     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp: At global scope:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp:100:5: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp:100:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testMORSE
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMORSE.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMORSE.dir/testMORSE.cpp.o  -o testMORSE -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testMORSE
make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/DependInfo.cmake --color=
Scanning dependencies of target testPBF
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/testPBF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testPBF.dir/testPBF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF.cpp
Linking CXX shared library ../../../lib/libRDKitChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2017.09.3 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  1 2 3 4
[ 83%] Built target ChemReactions
make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/DependInfo.cmake --color=
Scanning dependencies of target testRDF
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/testRDF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testRDF.dir/testRDF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF.cpp:117:1: warning: unused parameter 'argc' [-Wunused-parameter]
 main(int argc, char *argv[])
 ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF.cpp:117:1: warning: unused parameter 'argv' [-Wunused-parameter]
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp: In function 'void testRDF()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp:63:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i = 0; i < drdf.size(); i++) {
                                   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp: At global scope:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp:96:5: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp:96:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testPBF
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPBF.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testPBF.dir/testPBF.cpp.o  -o testPBF -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testPBF
make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake --color=
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testWHIM.dir/testWHIM.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM.cpp
Linking CXX executable testRDF
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDF.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testRDF.dir/testRDF.cpp.o  -o testRDF -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testRDF
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDescriptors
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM.cpp:184:5: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM.cpp:184:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testWHIM
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testWHIM.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testWHIM.dir/testWHIM.cpp.o  -o testWHIM -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testWHIM
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolAlign
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolAlign.so -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target rdMolAlign
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target MolDraw2D
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:405:6: warning: unused parameter 'opts' [-Wunused-parameter]
 void get2DCoordsForReaction(ChemicalReaction &rxn, const MolDrawOptions &opts,
      ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp:71:6: warning: unused parameter 'col2' [-Wunused-parameter]
 void MolDraw2DSVG::drawWavyLine(const Point2D &cds1, const Point2D &cds2,
      ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 41
[ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolDescriptors.so -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 84%] Built target rdMolDescriptors
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target testFMCS
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 89
[ 85%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/testFMCS_Unit.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp:60:6: warning: unused parameter 'col2' [-Wunused-parameter]
 void MolDraw2DCairo::drawWavyLine(const Point2D &cds1, const Point2D &cds2,
      ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 85%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 85%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
Linking CXX executable testFMCS
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o  -o testFMCS -rdynamic ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  89
[ 85%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target rdFMCS
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 85%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lcairo ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_serialization-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 85%] Built target MolDraw2D
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCStest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 16
[ 86%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/testFMCS.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdFMCS.so -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 86%] Built target rdFMCS
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target MolHash
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make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 86%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/c++   -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/MolHash.cpp
Linking CXX executable FMCStest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/FMCStest.dir/testFMCS.cpp.o  -o FMCStest -rdynamic ../../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  16
[ 86%] Built target FMCStest
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMPA
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 86%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 42
[ 87%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/c++   -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/HashToString.cpp
Linking CXX shared library ../../../lib/libRDKitMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2017.09.3 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  42
[ 87%] Built target MolHash
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMMPA
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 87%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
Linking CXX executable testMMPA
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o  -o testMMPA -rdynamic ../../../lib/libRDKitMMPA.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 87%] Built target testMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target StructChecker
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 53
[ 88%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp: In member function 'unsigned int RDKit::StructureCheck::StructChecker::checkMolStructure(RDKit::RWMol&) const':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:51:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
       if (Options.Verbose)
          ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:60:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
     if (Options.Verbose)
        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:68:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
       if (Options.Verbose)
          ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:77:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
     if (Options.Verbose)
        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:85:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
       if (Options.Verbose)
          ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:122:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
       if (Options.Verbose)
          ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:130:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
     if (Options.Verbose)
        ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 88%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMMPA.so -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 88%] Built target rdMMPA
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target substructLibraryTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 88%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::parseOptionsJSON(const string&, RDKit::StructureCheck::StructCheckerOptions&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:33:19: warning: unused variable 'iss' [-Wunused-variable]
     std::istream &iss = ss;
                   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:356:12: warning: unused variable 'k' [-Wunused-variable]
   unsigned k = fscanf(fp, "%d", &n);
            ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: At global scope:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:666:6: warning: unused parameter 'path' [-Wunused-parameter]
 bool loadChargeDataTables(const std::string &path) {
      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:191:5: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, char *argv[]) {
     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:191:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable substructLibraryTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o  -o substructLibraryTest -rdynamic ../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 88%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 88%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructureFlags.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 73
[ 89%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 89%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Utilites.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 54
[ 90%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'void RDKit::StructureCheck::applyAtomSymbolList(RDKit::RWMol&, std::string, RDKit::Atom&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:96:15: warning: unused variable 'atsym' [-Wunused-variable]
   const char *atsym = symbol.c_str();
               ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'bool RDKit::StructureCheck::TransformAugmentedAtoms(RDKit::RWMol&, const std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&, bool)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:216:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
         if(verbose)
           ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'bool RDKit::StructureCheck::RecMatch(const RDKit::ROMol&, unsigned int, const RDKit::StructureCheck::AugmentedAtom&, const std::vector<RDKit::StructureCheck::Neighbourhood>&, bool)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:374:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
     if (verbose)
        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'bool RDKit::StructureCheck::CheckAtoms(const RDKit::ROMol&, const std::vector<RDKit::StructureCheck::AugmentedAtom>&, bool)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:546:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
         if (verbose && //j >= 12 && j <= 21 &&
            ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:555:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
         if (verbose && //j >= 12 && j <= 21 &&
            ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:588:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
     if (verbose && nmatch == prevn)  // UNMATCHED atom
        ^
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdSubstructLibrary.so -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target RGroupDecomposition
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::DubiousStereochemistry(RDKit::RWMol&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:136:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
            n_ligands > 2 && n_ligands <= 4) &&
                                             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::FixDubious3DMolecule(RDKit::RWMol&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:222:56: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
           RDKit::Bond::BEGINDASH == bond->getBondDir() &&
                                                        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'void RDKit::StructureCheck::RemoveDubiousStereochemistry(RDKit::RWMol&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:334:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
            n_ligands > 2 && n_ligands <= 4) &&
                                             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::Atom3Parity(RDKit::StructureCheck::stereo_bond_t*)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:373:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
     if (ligands[i].direction != RDKit::Bond::NONE)
        ^
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 90%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StripSmallFragments.cpp
Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2017.09.3 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2017.09.3 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so
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[ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rdmolops.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 55
[ 91%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'bool RDKit::StructureCheck::ChargeFix::setpKaValues()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp:166:24: warning: variable 'AAp' set but not used [-Wunused-but-set-variable]
   const AugmentedAtom *AAp;
                        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'int RDKit::StructureCheck::ChargeFix::markMostAcidicAtoms(double&, double&)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp:416:17: warning: unused variable 'atom' [-Wunused-variable]
     const Atom &atom = *Mol.getAtomWithIdx(i);
                 ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 91%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/MolOps.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 91%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp: In member function 'bool RDKit::StructureCheck::StructCheckTautomer::applyTautomer(unsigned int)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:20:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
     if (Options.Verbose)
        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:28:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
     if (Options.Verbose)
        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:44:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
   if (Options.Verbose)
      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (-1 == ti || -1 == tj) continue;
               ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (-1 == ti || -1 == tj) continue;
                           ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:36:18: warning: unused variable 'ntb' [-Wunused-variable]
   const unsigned ntb = toTautomer.getNumBonds();
                  ^
Linking CXX shared library ../../../lib/libRDKitStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2017.09.3 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2017.09.3 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  53 54 55
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make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
Scanning dependencies of target rdkit
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 92%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/c++   -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:982:19: warning: unused parameter 'sza' [-Wunused-parameter]
 extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza,
                   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:982:19: warning: unused parameter 'szb' [-Wunused-parameter]
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1095:17: warning: unused parameter 'sza' [-Wunused-parameter]
 extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza,
                 ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1133:17: warning: unused parameter 'sza' [-Wunused-parameter]
 extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza,
                 ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1438:17: warning: unused parameter 'data' [-Wunused-parameter]
 extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
                 ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1438:17: warning: unused parameter 'isQuery' [-Wunused-parameter]
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1438:17: warning: unused parameter 'bitFlags' [-Wunused-parameter]
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1878:21: warning: unused variable 'fp' [-Wunused-variable]
     FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
                     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1900:21: warning: unused variable 'fp' [-Wunused-variable]
     FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
                     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1945:12: warning: unused variable 'nmols' [-Wunused-variable]
   int len, nmols = 0;
            ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_op.c
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/cache.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/cache.c
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/guc.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/guc.c
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/low_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c:410:3: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration]
   fcinfo->flinfo->fn_extra = searchSfpCache(
   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment makes pointer from integer without a cast [enabled by default]
   fcinfo->flinfo->fn_extra = searchSfpCache(
                            ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 79
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/mol_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:34:0:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition':
/usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^
/usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
/usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:33:0:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     PG_RETURN_INT32((int32)lst);
                     ^
/usr/include/pgsql/server/postgres.h:316:39: note: in definition of macro 'SET_4_BYTES'
 #define SET_4_BYTES(value) (((Datum) (value)) & 0xffffffff)
                                       ^
/usr/include/pgsql/server/fmgr.h:295:36: note: in expansion of macro 'Int32GetDatum'
 #define PG_RETURN_INT32(x)  return Int32GetDatum(x)
                                    ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32'
     PG_RETURN_INT32((int32)lst);
     ^
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:34:0:
/usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM'
     CROMol mol = PG_GETARG_DATUM(1);
                  ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/rdkit_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_gist.c
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable]
   double d;
          ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bfp_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:33:0:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c: In function 'gbfp_consistent':
/usr/include/pgsql/server/fmgr.h:299:28: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define PG_RETURN_BOOL(x)  return BoolGetDatum(x)
                            ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:407:8: note: 'result' was declared here
   bool result;
        ^
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:33:0:
/usr/include/pgsql/server/fmgr.h:299:28: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define PG_RETURN_BOOL(x)  return BoolGetDatum(x)
                            ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:477:8: note: 'result' was declared here
   bool result;
        ^
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:33:0:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c: In function 'gbfp_distance':
/usr/include/pgsql/server/fmgr.h:306:51: warning: 'similarity' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define PG_RETURN_FLOAT8(x)  return Float8GetDatum(x)
                                                   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:562:35: note: 'similarity' was declared here
   double nDelta, nQuery, nCommon, similarity;
                                   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:617:3: warning: 'similarity' may be used uninitialized in this function [-Wmaybe-uninitialized]
   return 1.0 - similarity;
   ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:594:33: note: 'similarity' was declared here
   double nKey, nQuery, nCommon, similarity;
                                 ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bfp_gin.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c: In function 'gin_bfp_triconsistent':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c:201:1: warning: control reaches end of non-void function [-Wreturn-type]
 }
 ^
In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c:32:0:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c: In function 'gin_bfp_consistent':
/usr/include/pgsql/server/postgres.h:338:26: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define BoolGetDatum(X) ((Datum) ((X) ? 1 : 0))
                          ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c:115:8: note: 'result' was declared here
   bool result;
        ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 80
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bitstring.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable]
   int i;
       ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/rdkit_io.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_io.c
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/rxn_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rxn_op.c
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment]
 //  /* keep compiler quiet - no extra ; */                                \
 ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/sfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/sfp_op.c
Linking CXX shared library librdkit.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/sql
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/data
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/expected
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o  -L/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/lib64 -lpq ../../../lib/libRDKitRDInchiLib.so.1.2017.09.3 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 -lboost_serialization-mt -lcairo ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 94%] Built target rdkit
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
Scanning dependencies of target testInchi
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/c++   -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/test.cpp
Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdmolops.so -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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[ 94%] Built target rdmolops
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeomHelpers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 94%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
Linking CXX executable testInchi
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testInchi.dir/test.cpp.o  -o testInchi -rdynamic -linchi ../../lib/libRDKitRDInchiLib.so.1.2017.09.3 -linchi ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../lib/libRDKitDepictor.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
Scanning dependencies of target testEnumeration
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Embedder.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp:372:8: warning: variable 'doLong' set but not used [-Wunused-but-set-variable]
   bool doLong = false;
        ^
Linking CXX executable testEnumeration
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o  -o testEnumeration -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
Scanning dependencies of target testReaction
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 96
[ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReaction.cpp
Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Built target DistGeomHelpers
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
Linking CXX executable testReactionFingerprints
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o  -o testReactionFingerprints -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemReactions
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
Linking CXX executable testReaction
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReaction.dir/testReaction.cpp.o  -o testReaction -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  96
[ 95%] Built target testReaction
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceFieldHelpers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
Linking CXX executable testMMFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o  -o testMMFFForceFieldHelpers -rdynamic ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceFieldHelpers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdChemReactions.so -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_serialization-mt -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Built target rdChemReactions
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testCrystalForceField
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 87
[ 96%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
Linking CXX executable testCrystalForceField
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o  -o testCrystalForceField -rdynamic ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  87
[ 96%] Built target testCrystalForceField
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeomHelpers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
Linking CXX executable testUFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o  -o testUFFForceFieldHelpers -rdynamic ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDistGeom
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++   -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
Linking CXX executable testDistGeomHelpers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o  -o testDistGeomHelpers -rdynamic ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Built target testDistGeomHelpers
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/testMolAlign.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdDistGeom.so -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Built target rdDistGeom
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DRxnTest1
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/rxn_test1.cpp
Linking CXX executable moldraw2DRxnTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o  -o moldraw2DRxnTest1 -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lcairo ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DTest1
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/test1.cpp
Linking CXX executable testMolAlign
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o  -o testMolAlign -rdynamic ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Built target testMolAlign
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDraw2D
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 70
[ 97%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
Linking CXX executable moldraw2DTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/moldraw2DTest1.dir/test1.cpp.o  -o moldraw2DTest1 -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lcairo ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target moldraw2DTest1
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolHash
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 93
[ 98%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/testMolHash.cpp
Linking CXX executable testMolHash
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolHash.dir/testMolHash.cpp.o  -o testMolHash -rdynamic ../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  93
[ 98%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 98%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolDraw2D.so -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lcairo -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  70
[ 98%] Built target rdMolDraw2D
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target testStructChecker
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 98%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void doLoadOptionsFromFiles(RDKit::StructureCheck::StructCheckerOptions&, const string&, bool)':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:98:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
   if (options.Verbose)
      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:101:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
   if (options.Verbose)
      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:106:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
   if (options.Verbose)
      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:111:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
   if (options.Verbose)
      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:122:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
   if (options.Verbose)
      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:127:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
   if (options.Verbose)
      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testLoadOptionsFromFiles()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:139:8: warning: unused variable 'ok' [-Wunused-variable]
   bool ok;
        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void test1()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:168:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void test2()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:195:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testStereo()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:324:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testOptionsDefault()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:400:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtomWithDefaultGoodAtoms()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:424:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtom()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:448:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckMatch()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:539:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
     if (!CheckAtoms(*mol, options.GoodAtoms, options.Verbose))
        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificExamples()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:603:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                        ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificOrder()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:676:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformTau()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:705:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformAtoms()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:749:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testAugmentedAtomTranslationsToAtomListQuery()':
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:787:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
                                                      ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: At global scope:
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:5: warning: unused parameter 'argc' [-Wunused-parameter]
 int main(int argc, const char* argv[]) {
     ^
/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolHash.so -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 98%] Built target rdMolHash
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target rdStructChecker
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 98%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/structchecker.cpp
Linking CXX executable testStructChecker
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o  -o testStructChecker -rdynamic ../../../lib/libRDKitStructChecker.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 98%] Built target testStructChecker
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
Scanning dependencies of target testRGroupDecomp
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 98%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
Linking CXX executable testRGroupDecomp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o  -o testRGroupDecomp -rdynamic ../../../lib/libRDKitRGroupDecomposition.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 98%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target rdRGroupDecomposition
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 71
[ 99%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdStructChecker.so -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o ../../../../lib/libRDKitStructChecker.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 99%] Built target rdStructChecker
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceField
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 91
[100%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/testMMFFForceField.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdRGroupDecomposition.so -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2017.09.3 ../../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  71
[100%] Built target rdRGroupDecomposition
Linking CXX executable testMMFFForceField
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o  -o testMMFFForceField -rdynamic ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  91
[100%] Built target testMMFFForceField
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 0
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ chrpath -d librdkit.so
+ popd
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ popd
~/build/BUILD/rdkit-Release_2017_09_3
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.JqNIdQ
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
++ dirname /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ cd rdkit-Release_2017_09_3
+ pushd python2
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2017_09_3/python2 -B/builddir/build/BUILD/rdkit-Release_2017_09_3/python2 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  44 45
[  2%] Built target RDGeneral
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  6 7
[  4%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  46
[  5%] Built target RDGeometryLib
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  32 33 34 35 36 37
[ 11%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 11%] Built target SubstructMatch
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  50 51 52
[ 14%] Built target SmilesParse
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  8
[ 15%] Built target Depictor
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 15%] Built target RDInchiLib
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/inchi.py
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 15%] Built target inchi_support
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 15%] Built target EigenSolvers
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 15%] Built target MolTransforms
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  17 18 19 20
[ 19%] Built target FileParsers
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 19%] Built target Subgraphs
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  43
[ 20%] Built target PartialCharges
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  9 10 11 12 13
[ 25%] Built target Descriptors
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `External/INCHI-API/CMakeFiles/testInchi.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 25%] Built target testInchi
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/RDBoost/CMakeFiles/RDBoost.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 25%] Built target RDBoost
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 25%] Built target rdinchi
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/RDGeneral/CMakeFiles/testDict.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  88
[ 26%] Built target testDict
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/RDGeneral/CMakeFiles/testRDValue.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 26%] Built target testRDValue
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  64
[ 27%] Built target rdBase
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 27%] Built target testDataStructs
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 27%] Built target testFPB
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  94
[ 28%] Built target testMultiFPB
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  57 58
[ 30%] Built target cDataStructs
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 30%] Built target testGrid
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  99
[ 31%] Built target testTransforms
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target rdGeometry
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target testMatrices
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target testAlignment
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target rdAlignment
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target testOptimizer
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  24 25 26 27 28
[ 36%] Built target ForceField
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  29
[ 37%] Built target ForceFieldHelpers
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 37%] Built target testUFFForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 37%] Built target MolAlign
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  14
[ 38%] Built target DistGeometry
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 38%] Built target DistGeomHelpers
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  91
[ 39%] Built target testMMFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target DistGeom
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target Catalogs
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  60
[ 40%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 40%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 40%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 40%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  61
[ 41%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 41%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 41%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 41%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  62
[ 42%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 42%] Built target hanoiTest
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/molBundleTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  63
[ 43%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 43%] Built target resMolSupplierTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  5
[ 44%] Built target ChemTransforms
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 44%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  65
[ 45%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  59
[ 46%] Built target cxsmilesTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  85
[ 47%] Built target smaTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target smiTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target testMol2ToMol
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  97
[ 48%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 48%] Built target testTplParser
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 48%] Built target testSubstructMatch
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  21
[ 49%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  22 23
[ 51%] Built target Fingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  1 2 3 4
[ 55%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 55%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  96
[ 56%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 56%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 56%] Built target rdChemReactions
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 56%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  98
[ 57%] Built target testSubgraphs1
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 57%] Built target testSubgraphs2
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 57%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  76
[ 58%] Built target rdfiltercatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  30 31
[ 60%] Built target FragCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  90
[ 61%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  77
[ 62%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 62%] Built target test3D
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 62%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  86
[ 63%] Built target testAUTOCORR3D
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testGETAWAY
make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testMORSE
make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testPBF
make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testRDF
make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testWHIM
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testFingerprints
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target rdPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testMolTransforms
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target rdMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  87
[ 64%] Built target testCrystalForceField
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  66
[ 65%] Built target rdForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 65%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 65%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 65%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 65%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  40
[ 66%] Built target MolChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 66%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  69
[ 67%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  49
[ 68%] Built target ShapeHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 68%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 68%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  39
[ 69%] Built target MolCatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 69%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 69%] Built target rdMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  41
[ 70%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  70
[ 71%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  15
[ 72%] Built target FMCS
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  89
[ 73%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 73%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  16
[ 74%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  42
[ 75%] Built target MolHash
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  93
[ 76%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 76%] Built target rdMolHash
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 76%] Built target MMPA
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 76%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 76%] Built target rdMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  53 54 55
[ 79%] Built target StructChecker
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 79%] Built target testStructChecker
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 79%] Built target rdStructChecker
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  47
[ 80%] Built target ReducedGraphs
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 80%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 80%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 80%] Built target Trajectory
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  100
[ 81%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  56
[ 82%] Built target SubstructLibrary
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 82%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  73
[ 83%] Built target rdSubstructLibrary
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target RGroupDecomposition
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  71
[ 84%] Built target rdRGroupDecomposition
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  48
[ 85%] Built target SLNParse
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 85%] Built target testSLNParse
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 85%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  74 75
[ 87%] Built target rdchem
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  81 82 83
[ 90%] Built target rdmolfiles
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 90%] Built target rdmolops
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  84
[ 91%] Built target rdqueries
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 91%] Built target rdtrajectory
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  95
[ 92%] Built target testQuery
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  92
[ 93%] Built target testMatCalc
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  68
[ 94%] Built target rdMetricMatrixCalc
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Built target hc
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Built target SimDivPickers
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Built target testSimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  72
[ 95%] Built target rdSimDivPickers
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Built target Clustering
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  38
[ 96%] Built target InfoTheory
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  67
[ 97%] Built target rdInfoTheory
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target cQuantize
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target ChemicalFeatures
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target testChemicalFeatures
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target rdChemicalFeatures
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  78 79 80
[100%] Built target rdkit
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[1]: Nothing to be done for `preinstall'.
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/CTestTestfile.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/cmake_install.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Makefile
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDConfig.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDLogger.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDRandom.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/TestRunner.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/_py2_pickle.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/six.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/cactvs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemdraw.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemdraw_qax.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/comhack.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/fileutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/listutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/spiral.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test3.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test2.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test1.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/retest.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/12h.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/epydoc.config
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Filter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Node.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Output.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Supply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Transform.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SDSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/demo.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/SimilarityPickers.py
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Grid3D.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/point.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Transform2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Transform3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Transform.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Utils.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/Matrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/SquareMatrix.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/Contrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/ForceField.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeometry.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeometry.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/BoundsMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/ChiralSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitCatalogs.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitCatalogs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitCatalogs.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitCatalogs.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/Catalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/CatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitGraphMol.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitGraphMol.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitGraphMol.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitGraphMol.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Atom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/atomic_data.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/AtomIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Bond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/BondIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Chirality.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Conformer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/details.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/GraphMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryAtom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryBond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RDKitBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Resonance.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RingInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Rings.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ROMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RWMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SanitException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/new_canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolBundle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFileParsers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFileParsers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFileParsers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/Crippen.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MQN.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/Property.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/PBF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/PMI.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/RDF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MORSE.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/GETAWAY.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/WHIM.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolAlign.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolAlign.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so.1
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/Seed.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdFMCS.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolHash.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolHash.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolHash.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolHash.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolHash.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMMPA.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMMPA.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMMPA.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMMPA.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMMPA.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Utilites.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Pattern.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Stereo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdStructChecker.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdStructChecker.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/AndQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/EqualityQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/GreaterQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/LessEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/LessQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/OrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/Query.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/QueryObjects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/RangeQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/SetQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/XOrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Features/Feature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so"
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ install -D librdkit.so /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/pgsql/rdkit.so
+ install -D rdkit.control /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/pgsql/extension/rdkit.control
+ install -D rdkit--3.5.sql /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/pgsql/extension/rdkit--3.5.sql
+ popd
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ popd
~/build/BUILD/rdkit-Release_2017_09_3
+ rm -r /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64//usr/share/RDKit
+ FMCS=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ sed '1{\@^#!/usr/bin/python2@d}' /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ touch -r /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new
+ mv /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ rm /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/rdkit-Release_2017_09_3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/pgsql/rdkit.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMMPA.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolHash.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolAlign.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemReactions.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructMatch.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFileParsers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitGraphMol.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitCatalogs.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceField.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitOptimizer.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitAlignment.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDataStructs.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDBoost.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDGeneral.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdStructChecker.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMMPA.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolHash.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdFMCS.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolAlign.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDistGeom.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemReactions.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdinchi.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataStructs/cDataStructs.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Geometry/rdGeometry.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Numerics/rdAlignment.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
/usr/lib/rpm/sepdebugcrcfix: Updated 86 CRC32s, 0 CRC32s did match.
symlinked /usr/lib/debug/usr/lib64/libRDKitChemicalFeatures.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemicalFeatures.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemicalFeatures.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemicalFeatures.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitInfoTheory.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitInfoTheory.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKithc.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKithc.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKithc.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKithc.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSimDivPickers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSimDivPickers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSLNParse.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSLNParse.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSLNParse.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSLNParse.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRGroupDecomposition.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRGroupDecomposition.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubstructLibrary.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubstructLibrary.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitTrajectory.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitTrajectory.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitTrajectory.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitTrajectory.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitReducedGraphs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitReducedGraphs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitReducedGraphs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitReducedGraphs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitStructChecker.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitStructChecker.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitStructChecker.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitStructChecker.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMMPA.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMMPA.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMMPA.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMMPA.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolHash.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolHash.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolHash.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolHash.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFMCS.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFMCS.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFMCS.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFMCS.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolDraw2D.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolDraw2D.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolCatalog.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolCatalog.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDepictor.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDepictor.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDepictor.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDepictor.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceField.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceField.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceField.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceField.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitAlignment.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitAlignment.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitAlignment.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitAlignment.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.1.debug
13294 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.iBAzHo
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ pushd python2
+ export RDBASE=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ RDBASE=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ export LD_LIBRARY_PATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib
+ LD_LIBRARY_PATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib
+ export PYTHONPATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ PYTHONPATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ ARGS='-V -E '\''pythonTestSping|testPgSQL'\'''
+ make test
Running tests...
/usr/bin/ctest --force-new-ctest-process -V -E 'pythonTestSping|testPgSQL'
UpdateCTestConfiguration  from :/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/DartConfiguration.tcl
UpdateCTestConfiguration  from :/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/DartConfiguration.tcl
Test project /builddir/build/BUILD/rdkit-Release_2017_09_3/python2
Constructing a list of tests
Done constructing a list of tests
Checking test dependency graph...
Checking test dependency graph end
test 1
        Start   1: testInchi

1: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/testInchi
1: Test timeout computed to be: 9.99988e+06
1: [10:53:27] -------------------------------------
1: [10:53:27] testing github issue 3: bad inchis when mol has no stereoinfo
1: [10:53:27] done
1: [10:53:27] testing a consequence of the fix for github issue 8: bad mols from some inchis
1: [10:53:27] -------------------------------------
1: [10:53:27] done
1: [10:53:27] testing github issue 40: bad MWs from inchis
1: [10:53:27] -------------------------------------
1: [10:53:28] done
1: [10:53:28] testing github issue 67: seg fault from inchi
1: [10:53:28] -------------------------------------
1: [10:53:28] Extended double-bond stereochemistry (e.g. C=C=C=C) ignored
1: [10:53:28] done
1: [10:53:28] testing github issue 68: hang while reading InChI
1: [10:53:28]   parse 1:
1: [10:53:28] -------------------------------------
1: [10:53:28]   done
1: [10:53:28]   parse 2:
1: [10:53:28]   done
1: [10:53:28] done
1: [10:53:28] testing github issue 296: problems with chiral S and inchi
1: [10:53:28] -------------------------------------
1: [10:53:28] done
1: [10:53:28] -------------------------------------
1: [10:53:28]     Test multithreading
1: reading molecules
1: generating reference data
1: processing
1:  launch :0
1:  launch :1
1:  launch :2
1:  launch :3
1: [10:53:32]   done
1: [10:53:32] testing github issue 437: problems with InChI and ring stereochemistry
1: [10:53:32] -------------------------------------
1: [10:53:32] done
1: [10:53:32] testing github issue 562: InChI radicals not properly converted
1: [10:53:32] -------------------------------------
1: [10:53:32] done
1: [10:53:32] testing github issue 614: segfault from MolToInchi when bad bond stereochem info is present
1: [10:53:32] -------------------------------------
1: [10:53:32] done
1: [10:53:32] testing github issue 1572: Incorrect conversion from InChI
1: [10:53:32] -------------------------------------
1: [10:53:32] done
  1/130 Test   #1: testInchi ..........................   Passed    5.12 sec
test 2
        Start   2: testDict

2: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/testDict
2: Test timeout computed to be: 9.99988e+06
2: [10:53:33] Testing Github940: property dictionaries leaking memory
2: [10:53:33] 	done
2: Testing RDValue
2: Testing RDAny
2: dict set int vect
2: dict get int vect
2: static boost any:0.26 s
2: dynamic boost any:0.57 s
2: static RDAny:0.04 s
2: dynamic RDAny:0.28 s
2: static RDValue:0 s
2: dynamic RDValue:0 s
2: deleted!
2: [10:53:34] dict test
2: [10:53:34] -------------------------------------
2: [10:53:34] Testing String Pickle Roundtrips.
2: [10:53:34] 	done
2: [10:53:34] -------------------------------------
2: [10:53:34] Testing conversion of vect to string.
2: [1.2,0,]
2: [10001,0,]
2: [10:53:34] 	done
2: [10:53:34] -------------------------------------
2: [10:53:34] Testing returning const references.
2: [10:53:34] any cast
2: [10:53:34] done: 0 300000
2: [10:53:34] copy
2: [10:53:34] done: 0 300000
2: [10:53:34] ref
2: [10:53:34] done: 0 300000
2: [10:53:34] dict
2: [10:53:34] done: 0.01 300000
2: [10:53:34] ref with hasVal
2: [10:53:34] done: 0 300000
2: [10:53:34] 	done
2: [10:53:34] -------------------------------------
2: [10:53:34] Testing dict update.
2: [10:53:34] 	done
  2/130 Test   #2: testDict ...........................   Passed    1.43 sec
test 3
        Start   3: testRDValue

3: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/testRDValue
3: Test timeout computed to be: 9.99988e+06
3: -- running tests -- 
3: min: -2147483648 -2147483648
3: min: 0 0
3: min: 2.22507e-308 2.22507e-308
3: min: 1.17549e-38 1.17549e-38
3: min: 0 0
3: == int
3: == double
3: == float
3: == unsigned int
3: == bool
3: == std::string
  3/130 Test   #3: testRDValue ........................   Passed    0.07 sec
test 4
        Start   4: testDataStructs

4: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testDataStructs
4: Test timeout computed to be: 9.99988e+06
4: [10:53:34] pass
4: [10:53:34] v3 4
4: [10:53:34] v4 5
4: [10:53:34]  SPARSE -----------------------------------
4: [10:53:34] Set 10: 0
4: [10:53:34] Set 11: 0
4: [10:53:34] Set 14: 0
4: [10:53:34] Set 10: 1
4: [10:53:34] Get 14: 1
4: [10:53:34] Num: 20
4: [10:53:34] NumOn: 3
4: [10:53:34] NumOff: 17
4: 10, 11, 14, 
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[14]: 1
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[14]: 0
4: t1: 10, 11, 14, 
4: t2: 10, 11, 15, 17, 
4: t1|t2: 10, 11, 14, 15, 17, 
4: t1&t2: 10, 11, 
4: t1^t2: 14, 15, 17, 
4: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
4:  except 
4: [10:53:34]  Explicit ----------------------------------
4: [10:53:34] Set 10: 0
4: [10:53:34] Set 11: 0
4: [10:53:34] Set 14: 0
4: [10:53:34] Set 10: 1
4: [10:53:34] Get 14: 1
4: [10:53:34] Num: 20
4: [10:53:34] NumOn: 3
4: [10:53:34] NumOff: 17
4: 10, 11, 14, 
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[14]: 1
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[14]: 0
4: t1: 10, 11, 14, 
4: t2: 10, 11, 15, 17, 
4: t1|t2: 10, 11, 14, 15, 17, 
4: t1&t2: 10, 11, 
4: t1^t2: 14, 15, 17, 
4: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
4:  except 
4: [10:53:34]  Done
4: [10:53:34]  Test DiscreteValue Vectors 1 ----------------------------
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34]  Test DiscreteValue Vectors 2 ------------------------------
4: [10:53:34]  Test DiscreteValue Vectors 3 ---------------------------
4: [10:53:34]  Test DiscreteValue Operations -----------------------------
4: [10:53:34]  Test DiscreteValue Operations 2 -------------------------- 
4: [10:53:34]  Test SparseIntVect  ------------------------------------
4: [10:53:34]  Test SparseIntVect Serialization  --------------------------
4: [10:53:34]  Test BitVect Serialization  -------------------------------
4: [10:53:34]  Test BitVect to FPS  -------------------------------
4: [10:53:34]  Test BitVect to binary string  -------------------------------
4: [10:53:34]  Test Similarity Measures BitVect -------------------------------
4: [10:53:34]  Test Similarity Measures SparseBitVect -------------------------------
4: [10:53:34]  Test BitVect with all ones -------------------------------
4: [10:53:34]  Test Explicit BitVects: Concatenation Operation  -------------------------------
4: [10:53:34]  Test bitmap operations  -------------------------------
  4/130 Test   #4: testDataStructs ....................   Passed    0.13 sec
test 5
        Start   5: testFPB

5: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testFPB
5: Test timeout computed to be: 9.99988e+06
5: [10:53:34] -----------------------
5:  Testing FPBReader basics 
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing Lazy FPBReader basics 
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing FPBReader tanimoto 
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing FPBReader tanimoto neighbors
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing FPBReader contains search
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing Lazy FPBReader basics 
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing Lazy FPBReader tanimoto 
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing Lazy FPBReader tanimoto neighbors
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing some internal bitset details
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing FPBReader Tversky 
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing FPBReader Tversky neighbors
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5:  Testing github issue 1118: deleting non-initialized FPBReader causes seg fault
5: [10:53:34] Finished
  5/130 Test   #5: testFPB ............................   Passed    0.06 sec
test 6
        Start   6: testMultiFPB

6: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testMultiFPB
6: Test timeout computed to be: 9.99988e+06
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader basics 
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader Tanimoto 
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader Tversky 
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader contains search
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader Similarity Threaded
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader Contains Threaded
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader edge cases 
6: [10:53:34] Finished
  6/130 Test   #6: testMultiFPB .......................   Passed    0.06 sec
test 7
        Start   7: pyBV

7: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testBV.py"
7: Test timeout computed to be: 9.99988e+06
7: .............
7: ----------------------------------------------------------------------
7: Ran 13 tests in 0.366s
7: 
7: OK
  7/130 Test   #7: pyBV ...............................   Passed    0.55 sec
test 8
        Start   8: pyDiscreteValueVect

8: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testDiscreteValueVect.py"
8: Test timeout computed to be: 9.99988e+06
8: ......
8: ----------------------------------------------------------------------
8: Ran 6 tests in 0.007s
8: 
8: OK
  8/130 Test   #8: pyDiscreteValueVect ................   Passed    0.09 sec
test 9
        Start   9: pySparseIntVect

9: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testSparseIntVect.py"
9: Test timeout computed to be: 9.99988e+06
9: ........
9: ----------------------------------------------------------------------
9: Ran 8 tests in 0.006s
9: 
9: OK
  9/130 Test   #9: pySparseIntVect ....................   Passed    0.09 sec
test 10
        Start  10: pyFPB

10: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testFPB.py"
10: Test timeout computed to be: 9.99988e+06
10: .........
10: ----------------------------------------------------------------------
10: Ran 9 tests in 0.022s
10: 
10: OK
 10/130 Test  #10: pyFPB ..............................   Passed    0.10 sec
test 11
        Start  11: testTransforms

11: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testTransforms
11: Test timeout computed to be: 9.99988e+06
11: ****************************************
11: testPointND
11: ****************************************
11: testPointOps3D
11: ****************************************
11: testPointOps2D
11: ****************************************
11: test12D
11: ref1: 1.68362 2.99797  ref2: 1.08715 4.04986 
11: pt1: 1.90007 2.73978  pt2: 1.09613 2.75896 
11: ****************************************
11: test23D
11: ****************************************
11: test3MatMultiply
11: Pt1: 1 0 0  Pt2: 2 0 0 
11: -Pt1: -1 -0 -0 
11: tp1: 0 0 0  tp2: 0 0 0 
11: tp1: 0 0 0  tp2: 0 0 0 
11: tp1: 0 0 3  tp2: 0 0 3 
11: npt1: 0 0 3  npt2: 0 0 4 
11: Pt1: 0 0 3  Pt2: 6.12323e-17 0 4 
11: ****************************************
11: testFromQuaternion
11: ****************************************
 11/130 Test  #11: testTransforms .....................   Passed    0.03 sec
test 12
        Start  12: testGrid

12: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testGrid
12: Test timeout computed to be: 9.99988e+06
12: ***********************************************************
12: Testing Grid
12: 	---------------------------------
12: 	 testUniformGrid1 
12: 
12: 	---------------------------------
12: 	 testUniformGrid2 
12: 
12: 	---------------------------------
12: 	 testUniformGridPickling 
12: 
12: 	---------------------------------
12: 	 testGridOps 
12: 
12: 	---------------------------------
12: 	 testUniformGridIndexing 
12: 
 12/130 Test  #12: testGrid ...........................   Passed    0.03 sec
test 13
        Start  13: testPyGeometry

13: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/testGeometry.py"
13: Test timeout computed to be: 9.99988e+06
13: ..........
13: ----------------------------------------------------------------------
13: Ran 10 tests in 0.017s
13: 
13: OK
13: Testing Geometry wrapper
 13/130 Test  #13: testPyGeometry .....................   Passed    0.11 sec
test 14
        Start  14: testMatrices

14: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/testMatrices
14: Test timeout computed to be: 9.99988e+06
14: [10:53:35] -----------------------------------------
14: [10:53:35] Testing RDNumerics: vectors and matrices Code
14: [10:53:35] ---------------------------------------
14: [10:53:35] 	 test1Vector
14: [10:53:35] ---------------------------------------
14: [10:53:35] 	 test2Matrix
14: [10:53:35] ---------------------------------------
14: [10:53:35] 	 test3SquareMatrix
14: [10:53:35] ---------------------------------------
14: [10:53:35] 	 test4SymmMatrix
 14/130 Test  #14: testMatrices .......................   Passed    0.02 sec
test 15
        Start  15: testAlignment

15: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/testAlignment
15: Test timeout computed to be: 9.99988e+06
15: -----------------------------------------
15: Testing Alignment Code
15: ---------------------------------------
15: 	 testBasic
15: ---------------------------------------
15: 	 testTriangle
15: ---------------------------------------
15: 	 testFourPts
15: ---------------------------------------
15: 	 testReflection
15: ---------------------------------------
 15/130 Test  #15: testAlignment ......................   Passed    0.01 sec
test 16
        Start  16: pyAlignment

16: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap/testAlignment.py"
16: Test timeout computed to be: 9.99988e+06
16: .....
16: ----------------------------------------------------------------------
16: Ran 5 tests in 0.011s
16: 
16: OK
16: Testing Alignment Wrapper code:
 16/130 Test  #16: pyAlignment ........................   Passed    0.09 sec
test 17
        Start  17: testOptimizer

17: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/testOptimizer
17: Test timeout computed to be: 9.99988e+06
17: -------------------------------------
17: Testing linear search.
17:   done
17: -------------------------------------
17: Testing BFGS optimization.
17:   done
 17/130 Test  #17: testOptimizer ......................   Passed    0.00 sec
test 18
        Start  18: testUFFForceField

18: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/testUFFForceField
18: Test timeout computed to be: 9.99988e+06
18: -------------------------------------
18: Unit tests for force field basics.
18:   done
18: -------------------------------------
18: Unit tests for basics of UFF bond-stretch terms.
18:   done
18: -------------------------------------
18: Unit tests for UFF bond-stretch terms.
18:   done
18: -------------------------------------
18: Unit tests for basics of UFF angle terms.
18:   done
18: -------------------------------------
18: Unit tests for UFF angle-bend terms.
18: theta = 3.14159; theta0 = 3.14159
18: theta = 2.094395, param1.theta0 = 2.094395
18:   done
18: -------------------------------------
18:  Test Simple UFF molecule optimizations.
18:   done
18: -------------------------------------
18: Unit tests for UFF nonbonded terms.
18:   done
18: -------------------------------------
18:  Test UFF torsional terms.
18:   done
18: -------------------------------------
18:  Test UFF Parameter objects
18: -------------------------------------
18:  Test Simple UFF molecule optimization, part 2.
18:   done
18: -------------------------------------
18:  Test UFF Torsion Conflicts.
18: C 0.4783 -0.7477 -0.0753 
18: C -0.5465 -0.0176 0.3519 
18: C -0.5114 1.4472 0.0870 
18: H -1.5201 -0.4838 0.2485 
18: H 0.4696 1.8363 0.3367 
18: O -1.2618 1.9423 0.6934 
18: F -0.7163 1.6298 -0.9622 
18:   done
18: -------------------------------------
18: Unit tests for UFF distance constraint terms.
18:   done
18: -------------------------------------
18: Unit tests for all UFF constraint terms.
18:   done
18: -------------------------------------
18: Unit tests for copying UFF ForceFields.
18:   done
 18/130 Test  #18: testUFFForceField ..................   Passed    0.05 sec
test 19
        Start  19: testMMFFForceField

19: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/testMMFFForceField
19: Test timeout computed to be: 9.99988e+06
19: -------------------------------------
19: Official MMFF validation suite.
19: 
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_dative.sdf...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: All 191 tests passed
19: 
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.sdf...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: All 191 tests passed
19: 
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_dative.smi...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: All 191 tests passed
19: 
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.smi...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: All 191 tests passed
19:   done
19: -------------------------------------
19: Unit tests for all MMFF constraint terms.
19:   done
19: -------------------------------------
19: Unit tests for copying MMFF ForceFields.
19:   done
 19/130 Test  #19: testMMFFForceField .................   Passed   10.15 sec
test 20
        Start  20: pyForceFieldConstraints

20: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/testConstraints.py"
20: Test timeout computed to be: 9.99988e+06
20: ...[10:53:46] 
20: 
20: ****
20: Invariant Violation
20: bad direction in linearSearch
20: Violation occurred on line 231 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/BFGSOpt.h
20: Failed Expression: status >= 0
20: ****
20: 
20: ......[10:53:46] 
20: 
20: ****
20: Invariant Violation
20: bad direction in linearSearch
20: Violation occurred on line 231 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/BFGSOpt.h
20: Failed Expression: status >= 0
20: ****
20: 
20: ...
20: ----------------------------------------------------------------------
20: Ran 12 tests in 0.508s
20: 
20: OK
 20/130 Test  #20: pyForceFieldConstraints ............   Passed    0.70 sec
test 21
        Start  21: testDistGeom

21: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/testDistGeom
21: Test timeout computed to be: 9.99988e+06
21: ***********************************************************
21:    test1 
21: ***********************************************************
21:    testIssue216 
21: Rows: 4 Columns: 4
21:       0      1      1      1
21:       1      0      1      1
21:       1      1      0      1
21:       1      1      1      0
21: ***********************************************************
21: 
 21/130 Test  #21: testDistGeom .......................   Passed    0.01 sec
test 22
        Start  22: pyDistGeom

22: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/rough_test.py"
22: Test timeout computed to be: 9.99988e+06
22: ......
22: ----------------------------------------------------------------------
22: Ran 6 tests in 0.010s
22: 
22: OK
 22/130 Test  #22: pyDistGeom .........................   Passed    0.09 sec
test 23
        Start  23: graphmolTest1

23: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolTest1
23: Test timeout computed to be: 9.99988e+06
23: Atoms:
23: 	0 8 O chg: 0  deg: 2 exp: 2 imp: 0 hyb: 0 arom?: 0 chi: 0
23: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 0 arom?: 0 chi: 0
23: 	2 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 0 arom?: 0 chi: 0
23: 	3 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 0 arom?: 0 chi: 0
23: 	4 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 0 arom?: 0 chi: 0
23: 	5 6 C chg: 0  deg: 1 exp: 3 imp: 1 hyb: 0 arom?: 0 chi: 0
23: 	6 6 C chg: 0  deg: 2 exp: 4 imp: 0 hyb: 0 arom?: 0 chi: 0
23: 	7 7 N chg: 0  deg: 2 exp: 1 imp: 2 hyb: 0 arom?: 1 chi: 0
23: 	8 22 Ti chg: 0  deg: 1 exp: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: getExplicitValence() called without call to calcExplicitValence()
23: Violation occurred on line 162 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
23: Failed Expression: d_explicitValence > -1
23: ****
23: 
23: N/A imp: -1 hyb: 0 arom?: 0 chi: 0
23: Bonds:
23: 	0 0->1 order: 1 conj?: 0 aromatic?: 0
23: 	1 1->2 order: 2 conj?: 0 aromatic?: 0
23: 	2 2->3 order: 1 conj?: 0 aromatic?: 0
23: 	3 0->4 order: 1 conj?: 0 aromatic?: 0
23: 	4 5->6 order: 3 conj?: 0 aromatic?: 0
23: 	5 6->7 order: 1 conj?: 0 aromatic?: 0
23: 	6 7->8 order: 2 conj?: 0 aromatic?: 0
23: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: bond already exists
23: Violation occurred on line 278 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
23: Failed Expression: !(boost::edge(atomIdx1, atomIdx2, d_graph).second)
23: ****
23: 
23: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: bond already exists
23: Violation occurred on line 278 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
23: Failed Expression: !(boost::edge(atomIdx1, atomIdx2, d_graph).second)
23: ****
23: 
23: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: attempt to add self-bond
23: Violation occurred on line 276 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
23: Failed Expression: atomIdx1 != atomIdx2
23: ****
23: 
23: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: bond already exists
23: Violation occurred on line 350 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
23: Failed Expression: !(boost::edge(bond_pin->getBeginAtomIdx(), bond_pin->getEndAtomIdx(), d_graph).second)
23: ****
23: 
23: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: attempt to add self-bond
23: Violation occurred on line 347 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
23: Failed Expression: bond_pin->getBeginAtomIdx() != bond_pin->getEndAtomIdx()
23: ****
23: 
23: [10:53:46] Explicit valence for atom # 0 B, 4, is greater than permitted
23: [10:53:46] Explicit valence for atom # 0 B, 5, is greater than permitted
23: [10:53:46] 
23: 
23: ****
23: Post-condition Violation
23: Element 'Xx' not found
23: Violation occurred on line 90 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PeriodicTable.h
23: Failed Expression: anum > -1
23: ****
23: 
23: [10:53:46] -------------------------------------
23: [10:53:46]     Test github381: thread-safe initialization of the periodic table
23: [10:53:46]   done
23: [10:53:46] -------------------------------------
23: [10:53:46]     Test github1041: Segfault for atom with no owner (expect some warnings)
23: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: no owner
23: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
23: Failed Expression: dp_mol
23: ****
23: 
23: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: no owner
23: Violation occurred on line 150 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Bond.h
23: Failed Expression: dp_mol
23: ****
23: 
23: [10:53:46]   done
23: [10:53:46] -------------------------------------
23: [10:53:46]     Test github1041: Segfault for atom with no owner (expect some warnings)
23: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: no owner
23: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
23: Failed Expression: dp_mol
23: ****
23: 
23: [10:53:46] 
23: 
23: ****
23: Pre-condition Violation
23: no owner
23: Violation occurred on line 150 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Bond.h
23: Failed Expression: dp_mol
23: ****
23: 
23: [10:53:46]   done
23: [10:53:46] -------------------------------------
23: [10:53:46]     Test github1453: RWMol.clear() should reset the numBonds count.
23: [10:53:46]   done
 23/130 Test  #23: graphmolTest1 ......................   Passed    0.09 sec
test 24
        Start  24: graphmolcpTest

24: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolcpTest
24: Test timeout computed to be: 9.99988e+06
24: [10:53:46] -----------------------
24:  Testing behavior of copied queries
24: 
24: 
24: 
24: COPY
24: [10:53:46] Finished
24: [10:53:46] -----------------------
24:  Testing copying conformers
24: [10:53:46] Finished
 24/130 Test  #24: graphmolcpTest .....................   Passed    0.02 sec
test 25
        Start  25: graphmolqueryTest

25: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolqueryTest
25: Test timeout computed to be: 9.99988e+06
25: [10:53:46] ---------------------- Test1
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test2
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test3
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test4
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test5
25: [10:53:46] Done!
25: [10:53:46] -------------------------------------
25: [10:53:46] Testing query--query matches
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test issue 2892580
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test github issue 53: query molecules not matching [R]
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test queries using qualifiers instead of ==
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test Github issue 165: radicals not used in atom-atom matching
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test extra atom queries
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test extra bond queries
25: [10:53:46] Done!
 25/130 Test  #25: graphmolqueryTest ..................   Passed    0.01 sec
test 26
        Start  26: graphmolMolOpsTest

26: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolMolOpsTest
26: Test timeout computed to be: 9.99988e+06
26: [10:53:46] C1CC1
26: [10:53:46] C1CCC1
26: [10:53:46] C1CCCCCC1
26: [10:53:46] C1C(CCC)CC(C(C)CCC(CC))CCC1
26: [10:53:46] CC1CCC1
26: [10:53:46] CC1C(C2)CCC2C1
26: [10:53:46] BFSR: 5
26: [10:53:46] BFSR: 6
26: [10:53:46] ( [10:53:46]  0[10:53:46]  5[10:53:46]  2[10:53:46]  1[10:53:46] )
26: [10:53:46] ( [10:53:46]  0[10:53:46]  7[10:53:46]  4[10:53:46]  1[10:53:46] )
26: [10:53:46] ( [10:53:46]  0[10:53:46]  7[10:53:46]  6[10:53:46]  5[10:53:46] )
26: [10:53:46] ( [10:53:46]  1[10:53:46]  4[10:53:46]  3[10:53:46]  2[10:53:46] )
26: [10:53:46] ( [10:53:46]  5[10:53:46]  2[10:53:46]  3[10:53:46]  6[10:53:46] )
26: [10:53:46] ( [10:53:46]  7[10:53:46]  6[10:53:46]  3[10:53:46]  4[10:53:46] )
26: [10:53:46] C(C1C2C3C41)(C2C35)C45
26: [10:53:46] C1CC2C1CCC2
26: [10:53:46] 
26: C12=C3C=CC=C1C=CC2=CC=C3
26: [10:53:46] C12=C3C=CC=C1C=CC2=CC=C3
26: [10:53:46] C1(O)C(O)C(O)C1O
26: [10:53:46] Count: 5
26: [10:53:46] -----------------------
26:  Testing Hydrogen Ops
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Distance Matrix Operations
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Atom Ranking
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing double bond stereochemistry
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Issue 183
26: 
26: Atoms:
26: 	0 17 Cl chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	2 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	5 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	7 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	8 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	10 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	11 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	12 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	13 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: Bonds:
26: 	0 0->1 order: 1 dir: 3 conj?: 0 aromatic?: 0
26: 	1 1->2 order: 1 conj?: 0 aromatic?: 0
26: 	2 1->3 order: 2 stereo: 3 conj?: 1 aromatic?: 0
26: 	3 3->4 order: 1 dir: 3 conj?: 1 aromatic?: 0
26: 	4 4->5 order: 1 conj?: 0 aromatic?: 0
26: 	5 4->6 order: 2 stereo: 3 conj?: 1 aromatic?: 0
26: 	6 6->7 order: 1 dir: 4 conj?: 0 aromatic?: 0
26: 	7 6->8 order: 1 conj?: 0 aromatic?: 0
26: 	8 3->9 order: 1 dir: 4 conj?: 1 aromatic?: 0
26: 	9 9->10 order: 1 conj?: 0 aromatic?: 0
26: 	10 9->11 order: 2 stereo: 2 conj?: 1 aromatic?: 0
26: 	11 11->12 order: 1 dir: 3 conj?: 0 aromatic?: 0
26: 	12 11->13 order: 1 conj?: 0 aromatic?: 0
26: [10:53:46] ref: C/C(F)=C(C)/C(=C(/C)Cl)C(/F)=C(/C)F
26: [10:53:46] smi: C/C(F)=C(C)/C(=C(/C)Cl)C(/F)=C(/C)F
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Issue 188: bad CIP rankings
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Issue 189: BondDirs not getting properly cleared.
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing shortest path code. This should finish very quickly.
26: path: 2
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Issue 190: BondDirs incorrectly cleared.
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Issue 211
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Issue 210
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Issue 212
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing AddHs with coordinates
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26:  Testing Add Confomers
26: [10:53:46] Finished 
26:  [10:53:46] -----------------------
26:  Sanitization special cases
26: [10:53:46] Warning: conflicting stereochemistry at atom 10 ignored.
26: [10:53:46] Warning: conflicting stereochemistry at atom 10 ignored.
26: [10:53:46] Finished
26: [10:53:47] -----------------------
26:  Issue 276
26: [10:53:47] Finished 
26:  [10:53:47] -----------------------
26:  Additional Aromaticity Cases
26: [10:53:47] Finished 
26:  [10:53:47] -----------------------
26:  Testing sf.net issue 1694023 (bad chiral smiles after removing Hs) 
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 1719053 (Ring stereochemistry incorrectly removed) 
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 1811276 (kekulization failing) 
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 1836576 (sanitization crash) 
26: [10:53:47] Explicit valence for atom # 0 B, 5, is greater than permitted
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing impact of removeHs on chirality
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing SFIssue1894348 (impact of removeHs on bond stereo atoms)
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 1942657 
26: [10:53:47] Explicit valence for atom # 1 C, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 C, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 C, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 Si, 7, is greater than permitted
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 198608 
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing hybridization assignment 
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing some aromaticity edge cases 
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2196817: handling of aromatic dummies
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2208994 : kekulization error
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2313979: aromaticity assignment hangs 
26: [10:53:47]    Doing molecule: bucky1
26: [10:53:47]      This should finish in a few seconds.  >>>
26: [10:53:47]    <<< Done.
26: [10:53:47]    Doing molecule: bucky2
26: [10:53:47]      This should finish in a few seconds.  >>>
26: [10:53:47]    <<< Done.
26: [10:53:47]    Doing molecule: bucky3
26: [10:53:47]      This should finish in a few seconds.  >>>
26: [10:53:47]    <<< Done.
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2316677 : canonicalization error
26: smi: Cc1ccc(S(=O)(=O)/N=C2\CC(=N\C(C)(C)C)/C2=N\C(C)(C)C)cc1
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2951221 : hydrogens added with bad coordinates
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2952255 : bad assignment of radicals to early elements
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 3185548 : problems with SSSR code
26: [10:53:47]   Starting file read 1
26: [10:53:47]   finished
26: [10:53:47]   Starting file read 2
26: [10:53:47]   finished
26: [10:53:47] Finished
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing Issue 3349243
26: [10:53:47] 	done
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing fast find rings
26: [10:53:47] 	done
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2830244: make sure that non-ring aromatic atoms generate errors:
26: [10:53:47] non-ring atom 0 marked aromatic
26: [10:53:47] non-ring atom 0 marked aromatic
26: [10:53:47] Finished
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing Issue 3349243
26: [10:53:47] 	done
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing canonicalization basics
26: [10:53:47] Conflicting single bond directions around double bond at index 17.
26: [10:53:47]   BondStereo set to STEREONONE and single bond directions set to NONE.
26: [10:53:47] 	done
26: [10:53:47] -----------------------
26:  Testing sf.net issue 3549146: problems after mergeQueryHs
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 249: finding rings consumes all memory
26: starting ring finding
26: done
26: starting ring finding
26: done
26: starting ring finding
26: done
26: starting sanitization
26: done
26: starting sanitization
26: done
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 256: bad atom counts
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 266: ring finding error
26: starting ring finding
26: done
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 266: ring finding error
26: starting ring finding
26: done
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing sf.net issue 272: removing two-coordinate Hs
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing Github issue 8 (impact of removeAtom on bond stereo atoms)
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing Github issue 42 (impact of removeAtom on atom stereochem)
26: smiles: CC[C@]1(C(=O)c([nH])n)CC[C@](C)(O)CC1
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing Github issue 65 (kekulization of boron-containing aromatic rings)
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing Github issue 72 (problems with bad benzothiazolium structure)
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing renumbering atoms
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing github issue 141: Kekulization of molecule with aromatic N leaves the explicit H there.
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] Testing ZBO basics
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing operator= on molecules
26: [10:53:47] Finished
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing Atom-Atom matching behavior
26: [10:53:47] 	done
26: [10:53:47] -----------------------
26:  Testing github issue 190: Don't merge Hs onto dummy atoms.
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing getMolFragsWithQuery().
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing CIP chirality
26: -------------------------------
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing github issue 418: removeHs not updating H count.
26: [10:53:47] Explicit valence for atom # 0 N, 4, is greater than permitted
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing github issue 432: problems caused by aromatic Ns with radical electrons.
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26:  Testing github issue 443: kekulization problems caused by any bonds.
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 447: Radicals are not correctly assigned when reading from SMILES.
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing generation of new molecules from molecule fragments
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 510: Hexafluorophosphate cannot be handled
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 526: Bad ring finding in a complex fused ring
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 539: Lack of conjugation in allyl cations, lack of aromaticity perception/ability to kekulize aromatic carbocations such as cyclopropenyl and tropylium
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 678: failure in AddHs when addCoords is true and coords are all zero
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 717: AddHs cip rank is declared <int> should be unsigned int
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github #754 : loss of double bond geometry with removeHs
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github #805 : Pre-condition Violation: bad bond type
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github #518 : Rings containing all dummy atoms with single bonds are flagged as aromatic
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing error reporting for kekulization
26: [10:53:48] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
26: 
26: [10:53:48] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
26: 
26: [10:53:48] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
26: 
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue #868: inappropriate warning from MergeQueryHs
26: [10:53:48] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26:  Testing simple aromaticity
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing custom aromaticity
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 908: AddHs() using 3D coordinates with 2D conformations
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26:  Testing github issue 962: Kekulization issues post successful smiles parsing
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26:  Testing github issue 1021: AssignStereochemistry() giving incorrect results after FastFindRings()
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26:  Testing github issue 607: AssignAtomChiralTagsFromStructure() not recognizing chiral S
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26:  Testing adjustQueryProperties()
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 1204: Support tetravalent and hexavalent Te
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing findPotentialStereoBonds
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing Bond::setStereo(Bond::STEREOCIS / Bond::STEREOTRANS)
26: [10:53:48] C/C=C\C == C/C=C\C 4
26: [10:53:48] C/C=C/C == C/C=C/C 5
26: [10:53:48] C/C=C\C=C\C == C/C=C\C=C\C 4
26: [10:53:48] C/C=C/C=C/C == C/C=C/C=C/C 5
26: [10:53:48] C/C=C\C=C/C == C/C=C\C=C/C 4
26: [10:53:48] C/C=C/C=C\C == C/C=C/C=C\C 5
26: [10:53:48] C/C=C\C=C/C == C/C=C\C=C/C 4
26: [10:53:48] C/C=C/C=C\C == C/C=C/C=C\C 5
26: [10:53:48] C/C=C\C=C\C == C/C=C\C=C\C 4
26: [10:53:48] C/C=C/C=C/C == C/C=C/C=C/C 5
26: [10:53:48] C(\C)=C\C == C(\C)=C\C 4
26: [10:53:48] C(\C)=C/C == C(\C)=C/C 5
26: [10:53:48] C(\C)=C\C=C\C == C(\C)=C\C=C\C 4
26: [10:53:48] C(\C)=C/C=C/C == C(\C)=C/C=C/C 5
26: [10:53:48] C(\C)=C\C=C/C == C(\C)=C\C=C/C 4
26: [10:53:48] C(\C)=C/C=C\C == C(\C)=C/C=C\C 5
26: [10:53:48] C(\C)=C\C=C/C == C(\C)=C\C=C/C 4
26: [10:53:48] C(\C)=C/C=C\C == C(\C)=C/C=C\C 5
26: [10:53:48] C(\C)=C\C=C\C == C(\C)=C\C=C\C 4
26: [10:53:48] C(\C)=C/C=C/C == C(\C)=C/C=C/C 5
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] -----------------------
26:  Testing Bond::setStereoAtoms(...)
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] -----------------------
26:  Testing github issue 1478: 
26:   Aromatic rings composed solely of dummy atoms should not be kekulized
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 1439: 
26: RemoveHs() removes H atom attached to dummy if it came from AddHs()
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing github issue 1281: 
26: RDKit gets stuck on PubChem CID 102128817
26: [10:53:48] Maximum BFS search size exceeded.
26: This is likely due to a highly symmetric fused ring system.
26: [10:53:48] Maximum BFS search size exceeded.
26: This is likely due to a highly symmetric fused ring system.
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing Github issue 1605: Inappropriate bad valence exception during partial sanitization. 
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26:  Testing Github issue 1703: Dative bonds interfere with kekulization and the perception of aromaticity
26: [10:53:48] Finished
 26/130 Test  #26: graphmolMolOpsTest .................   Passed    1.72 sec
test 27
        Start  27: graphmoltestCanon

27: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestCanon
27: Test timeout computed to be: 9.99988e+06
27: [10:53:48] Pass in the list of smiles
27: [10:53:48] FINISHED after 0 lines.
 27/130 Test  #27: graphmoltestCanon ..................   Passed    0.01 sec
test 28
        Start  28: graphmoltestChirality

28: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestChirality
28: Test timeout computed to be: 9.99988e+06
28: [10:53:48] -------------------------------------
28: [10:53:48] CIP codes from SMILES
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] CIP codes from a mol file (1)
28: [10:53:48]  >>>>>>>>>>>>> smiles 1 <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] CIP codes from a mol file (2)
28: [10:53:48]  >>>>>>>>>>>>> smiles 1 <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> smiles 2 <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] CIP codes from a mol->smiles conversion (1)
28: [10:53:48] smiout: N[C@H](O)I
28: [10:53:48]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] chirality cleanup
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] chirality perception from 3D coordinates: 
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] iterative chirality (sf.net issue 1931470): 
28: [10:53:48]  : C[C@H]1CCC[C@@H](C)[C@H]1C C[C@H]1CCC[C@@H](C)[C@H]1C
28: [10:53:48]  : C[C@H]1CCC[C@@H](C)[C@@H]1C C[C@H]1CCC[C@@H](C)[C@@H]1C
28: [10:53:48]  : CC1[C@H](C)CCC[C@H]1C CC1[C@H](C)CCC[C@H]1C
28: [10:53:48]  : CC1[C@H](C)CCC[C@H]1C CC1[C@H](C)CCC[C@H]1C
28: [10:53:48]  : C/C=C\[C@@H](C)/C=C/C C/C=C\[C@@H](C)/C=C/C
28: [10:53:48]  : C/C=C\[C@H](C)/C=C/C C/C=C\[C@H](C)/C=C/C
28: [10:53:48]  : C/C=C/C(C)/C=C/C C/C=C/C(C)/C=C/C
28: [10:53:48]  : CC=C[C@@H](C)/C=C/C CC=C[C@@H](C)/C=C/C
28: [10:53:48]  : CC=C[C@H](C)/C=C\C CC=C[C@H](C)/C=C\C
28: [10:53:48]  : C/C=C(/[C@@](C)(F)Cl)[C@](C)(F)Cl C/C=C(/[C@@](C)(F)Cl)[C@](C)(F)Cl
28: [10:53:48]  : C/C=C(\[C@@](C)(F)Cl)[C@](C)(F)Cl C/C=C(\[C@@](C)(F)Cl)[C@](C)(F)Cl
28: [10:53:48]  : CC=C([C@](C)(F)Cl)[C@](C)(F)Cl CC=C([C@](C)(F)Cl)[C@](C)(F)Cl
28: [10:53:48]  : C/C=C\C(\C=C\C)=C\C C/C=C\C(\C=C\C)=C\C
28: [10:53:48]  : C/C=C\C(=C/C)\C=C\C C/C=C\C(=C/C)\C=C\C
28: [10:53:48]  : CC=C(/C=C/C)/C=C/C CC=C(/C=C/C)/C=C/C
28: [10:53:48]  : CC=C(/C=C\C)/C=C\C CC=C(/C=C\C)/C=C\C
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] testing that the removal of bond directions is correct: 
28: [10:53:48]  : BC(=C/Cl)/C=C/C BC(=C/Cl)/C=C/C
28: [10:53:48]  : BC(=C/Cl)/C=C/C BC(=C/Cl)/C=C/C
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 2762917: chirality swap on addHs()
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 3009911: bad atom priorities
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 3139534: stereochemistry in larger rings
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Test findChiralAtoms.
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 3453172: stereochemistry at three-coordinate S and Se
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] test ring stereochemistry 
28: [10:53:48]  : B[C@H]1CC[C@H](C)CC1 B[C@H]1CC[C@H](C)CC1
28: [10:53:48]  : B[C@H]1CC[C@H](C)CC1 B[C@H]1CC[C@H](C)CC1
28: [10:53:48]  : C[C@H]1CC[C@H](F)CC1 C[C@H]1CC[C@H](F)CC1
28: [10:53:48]  : CC1(C)CCC(F)CC1 CC1(C)CCC(F)CC1
28: [10:53:48]  : C1CC2CCC1CC2 C1CC2CCC1CC2
28: [10:53:48]  : CC12CCC(C)(CC1)CC2 CC12CCC(C)(CC1)CC2
28: [10:53:48]  : CC12CCC(C)(NC1)OC2 C[C@]12CC[C@](C)(CN1)CO2
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 87: removal of bond wedging
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 90: isotopes and chirality
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 2705543: 
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 553: Chirality not affected by atom-map index
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 803: Support larger isotope deltas in the chirality assignment
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 1294: ring stereochemistry perception failing for spiro centers
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 1423: Generate a warning for conflicting bond directions
28: [10:53:48] Conflicting single bond directions around double bond at index 2.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] Conflicting single bond directions around double bond at index 4.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] Conflicting single bond directions around double bond at index 15.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] Conflicting single bond directions around double bond at index 2.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] Conflicting single bond directions around double bond at index 1.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing assignStereochemistryFrom3D
28: [10:53:48] done
 28/130 Test  #28: graphmoltestChirality ..............   Passed    0.10 sec
test 29
        Start  29: graphmoltestPickler

29: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestPickler
29: Test timeout computed to be: 9.99988e+06
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing String Pickle Roundtrips.
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing reading existing pickle file (v2).
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing combining molecules using pickles.
29: Atoms:
29: 	0 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	1 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	2 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	3 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	4 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	5 8 O chg: 0  deg: 2 exp: 2 imp: 0 hyb: 4 arom?: 0 chi: 0
29: 	6 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: Bonds:
29: 	0 0->1 order: 1 conj?: 0 aromatic?: 0
29: 	1 1->2 order: 1 conj?: 0 aromatic?: 0
29: 	2 2->0 order: 1 conj?: 0 aromatic?: 0
29: 	3 3->4 order: 1 conj?: 0 aromatic?: 0
29: 	4 4->5 order: 1 conj?: 0 aromatic?: 0
29: 	5 5->6 order: 1 conj?: 0 aromatic?: 0
29: 	6 6->3 order: 1 conj?: 0 aromatic?: 0
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing Issue164: Roundtrip Pickle Failure.
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing Issue219: Pickle Failure with Conformations.
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing Issue220: Pickle problems with bond stereochemistry.
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing query serialization.
29: [10:53:48] C=[$(C=O)]
29: [10:53:48] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl]
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing radical handling in pickles.
29: [10:53:48] 	done
29: [10:53:48] -----------------------
29: [10:53:48] Testing pickling of properties
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing sf.net issue 2788233.
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing sf.net issue 3202580.
29:   mass! 13.0034
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing sf.net issue 3316407.
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing sf.net issue 3496759.
29: [10:53:49] 	done
29: [10:53:49] -------------------------------------
29: [10:53:49] Testing sf.net issue 280.
29: [10:53:49] 	done
29: [10:53:49] -------------------------------------
29: [10:53:49] Testing sf.net issue 285.
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] Testing residue information handling on atoms
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] Testing Github issue 149: cannot pickle unsanitized molecules
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] Testing Github issue 713: Molecule serialization doesn't read/write atomic numbers above 128
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] Testing Github 1563: Add a canned Atom query for heavy atom degree
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] Testing Github 1710: bonds that are STEREOCIS or STEREOTRANS cannot be depickled
29: [10:53:49] 	done
 29/130 Test  #29: graphmoltestPickler ................   Passed    0.27 sec
test 30
        Start  30: graphmoltestPicklerGlobalSetting

30: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestPicklerGlobalSetting
30: Test timeout computed to be: 9.99988e+06
30: [10:53:49] -----------------------
30: [10:53:49] Testing pickling of properties
30: [10:53:49] 	done
 30/130 Test  #30: graphmoltestPicklerGlobalSetting ...   Passed    0.01 sec
test 31
        Start  31: graphmolIterTest

31: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolIterTest
31: Test timeout computed to be: 9.99988e+06
31: [10:53:49] test1 done
31: [10:53:49] test2 done
31: [10:53:49] test3 done
31: [10:53:49] test4 done
31: [10:53:49] test5 done
31: [10:53:49] test6 done
31: [10:53:49] test7 done
31: [10:53:49] test8 done
31: [10:53:49] testIssue263 done
 31/130 Test  #31: graphmolIterTest ...................   Passed    0.01 sec
test 32
        Start  32: hanoiTest

32: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/hanoiTest
32: Test timeout computed to be: 9.99988e+06
32: [10:53:49] Testing the hanoi sort
32: [10:53:49] populating vectors
32: [10:53:49] sorting (hanoi sort) vectors
32: [10:53:50] done: 500000
32: [10:53:50] Done
32: [10:53:50] Testing hanoi with a functor.
32: [10:53:50] Done
32: [10:53:50] Testing basic partition refinement.
32: [10:53:50] Done
32: [10:53:50] Testing partition refinement with neighbors.
32: [10:53:50] Done
32: [10:53:50] testing canonicalization via tie breaking.
32: [10:53:50] Done
32: [10:53:50] testing canonicalization using the wrapper.
32: [10:53:50] Done
32: [10:53:50] testing some specific ordering problems
32: [10:53:50] Finished
32: [10:53:50] testing chiral invariants.
32: [10:53:50] Finished
32: [10:53:50] testing unique ranks in w.r.t. renumbering.
32: [10:53:50] Finished
32: [10:53:50] testing mol fragments.
32: [10:53:50] Finished
32: [10:53:50] testing protein round-tripping.
32: [10:53:51] Finished
32: [10:53:51] testing stability w.r.t. renumbering.
32: [10:54:08] Finished
32: [10:54:08] testing smiles round-tripping.
32: [10:54:08] Finished
32: [10:54:08] testing github #1567: Non-canonical result from MolFragmentToSmiles()
32: [10:54:08] Finished
 32/130 Test  #32: hanoiTest ..........................   Passed   19.87 sec
test 33
        Start  33: graphmolMemTest1

33: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolMemTest1
33: Test timeout computed to be: 9.99988e+06
33: [10:54:08] -----------------------
33:  dict
33: [10:54:08] Finished
 33/130 Test  #33: graphmolMemTest1 ...................   Passed    0.01 sec
test 34
        Start  34: resMolSupplierTest

34: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/resMolSupplierTest
34: Test timeout computed to be: 9.99988e+06
34: [10:54:08] -----------------------
34: testBaseFunctionality
34: [10:54:08] -----------------------
34: testBenzylCation
34: [10:54:08] -----------------------
34: testBenzylAnion
34: [10:54:08] -----------------------
34: testButadiene
34: [10:54:08] -----------------------
34: testZwitterion
34: [10:54:08] -----------------------
34: testChargeMigration
34: [10:54:08] -----------------------
34: testChargeSeparation1
34: [10:54:08] -----------------------
34: testChargeSeparation2
34: [10:54:08] -----------------------
34: testMultipleConjGroups1
34: [10:54:08] -----------------------
34: testMultipleConjGroups2
34: [10:54:08] -----------------------
34: testDimethylMalonate
34: [10:54:08] -----------------------
34: testMethylAcetate
34: [10:54:08] -----------------------
34: testPyranium2_6dicarboxylate
34: [10:54:08] -----------------------
34: testSubstructMatchAcetate
34: [10:54:08] -----------------------
34: testSubstructMatchDMAP
34: [10:54:08] -----------------------
34: testCrambin
34: [10:54:09] -----------------------
34: testGitHub1166
 34/130 Test  #34: resMolSupplierTest .................   Passed    0.71 sec
test 35
        Start  35: molBundleTest

35: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molBundleTest
35: Test timeout computed to be: 9.99988e+06
35: [10:54:09] -----------------------
35:     testBaseFunctionality
35: [10:54:09]   Done.
35: [10:54:09] -----------------------
35:     testSubstructFunctionality
35: [10:54:09]   Done.
35: [10:54:09] -----------------------
35:     testExceptions
35: [10:54:09]   Done.
 35/130 Test  #35: molBundleTest ......................   Passed    0.01 sec
test 36
        Start  36: testDepictor

36: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/testDepictor
36: Test timeout computed to be: 9.99988e+06
36: [10:54:09] ***********************************************************
36: [10:54:09]    test1 
36: [10:54:09] ***********************************************************
36: 
36: [10:54:09] ***********************************************************
36: [10:54:09]    testCollisions 
36: [10:54:09] ***********************************************************
36: 
36: [10:54:09] ***********************************************************
36: [10:54:09]    testAddHs 
36: [10:54:09] ***********************************************************
36: 
36: [10:54:09] ***********************************************************
36: [10:54:09]    test198 
36: [10:54:09] ***********************************************************
36: 
36: [10:54:09] ***********************************************************
36: [10:54:09]    test2 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    test3 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    test4 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    tempTest 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Issue248 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Queries 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test crashes associated with RemoveHs 
36: [10:54:09] WARNING: bond found with stereo spec but no stereo atoms
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2091304
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2821647
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2948402
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2995724
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Testing a change of the depictor bond length
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 3122141
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 3135833
36: [10:54:09] Warning: stereochemistry around double bond may be incorrect in depiction.
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 3487469
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 8
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 78
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 910
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 1073
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    testConstrainedCoords
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 1112: Bad coordinate generation for H2
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2303566
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 1286: GenerateDepictionMatching2DStructure isn't matching 2D structure
36: [10:54:09] ***********************************************************
36: [10:54:09] -----------------------
36:  Testing Github issue 1691: Acetylenic hydrogens not given appropriate 2D coordinates
36: [10:54:09] Finished
 36/130 Test  #36: testDepictor .......................   Passed    0.26 sec
test 37
        Start  37: pyDepictor

37: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/testDepictor.py"
37: Test timeout computed to be: 9.99988e+06
37: .......
37: ----------------------------------------------------------------------
37: Ran 7 tests in 0.162s
37: 
37: OK
 37/130 Test  #37: pyDepictor .........................   Passed    0.30 sec
test 38
        Start  38: smiTest1

38: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smiTest1
38: Test timeout computed to be: 9.99988e+06
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing molecules which should parse.
38: [10:54:10] ***: C1CC2C1CC2
38: [10:54:10] ***: c1cccn(=O)c1
38: [10:54:10] ***: C
38: [10:54:10] ***: CC
38: [10:54:10] ***: C-C
38: [10:54:10] ***: C=C
38: [10:54:10] ***: [CH2+]C[CH+2]
38: [10:54:10] ***: C1CC1
38: [10:54:10] ***: C1CC=1
38: [10:54:10] ***: C=1CC1
38: [10:54:10] ***: C=C-O
38: [10:54:10] ***: C1CC1
38: [10:54:10] ***: C1NC1
38: [10:54:10] ***: C1=CC1
38: [10:54:10] ***: C1CCC1
38: [10:54:10] ***: CC(C)CC
38: [10:54:10] ***: CC(=O)O
38: [10:54:10] ***: C1C(=O)C1
38: [10:54:10] ***: C1C(N)C1
38: [10:54:10] ***: CC(O)C
38: [10:54:10] ***: OC=CCC
38: [10:54:10] ***: CC([O-])O
38: [10:54:10] ***: C1CC2C1CC2
38: [10:54:10] ***: Cl/C=C/Cl
38: [10:54:10] ***: Cl/C=C\Cl
38: [10:54:10] ***: Cl/C=C/Cl
38: [10:54:10] ***: Cl/C=C\Cl
38: [10:54:10] ***: Cl/C=C\\Cl
38: [10:54:10] ***: C1CC.CC1
38: [10:54:10] ***: C1C(C2CC2).C2CC2C1
38: [10:54:10] ***: [Na+].[Cl-].[NH4+].[Cl-]
38: [10:54:10] ***: C[35Cl]
38: [10:54:10] ***: C%10CC%10
38: [10:54:10] ***: [H][H]
38: [10:54:10] ***: [H+]
38: [10:54:10] ***: C[N+](=O)[O-]
38: [10:54:10] ***: N1C(=N)SC=C1
38: [10:54:10] ***: [O-][N+](=O)C1=CNC(=N)S1
38: [10:54:10] ***: CN(=O)=O
38: [10:54:10] ***: C1=CC=C[N+]([O-])=C1
38: [10:54:10] ***: C1=CC=CN(=O)=C1
38: [10:54:10] ***:   C1=CC=CN(=O)=C1
38: [10:54:10] ***: C1=CC=CN(=O)=C1  
38: [10:54:10] ***:   C1=CC=CN(=O)=C1  
38: [10:54:10] ***: 	C1=CC=CN(=O)=C1
38: 
38: [10:54:10] ***: c1ccccc1[*]
38: [10:54:10] ***: c1ccccc1[1*]
38: [10:54:10] ***: S1cccc1
38: [10:54:10] ***: *1ccccc1
38: [10:54:10] ***: C1=CC=CC=C1
38: [10:54:10] ***: *1=CC=CC=C1
38: [10:54:10] ***: *1*cccc1
38: [10:54:10] ***: *1**ccc1
38: [10:54:10] ***: c1ccc[se]1
38: [10:54:10] ***: c1ccc[te]1
38: [10:54:10] ***: C0CC0
38: [10:54:10] ***: C/C(/C=C2\Sc1ccc(cc1N\2C))=C5\SC4=NccN4C\5=O
38: [10:54:10] ***: [HH]
38: [10:54:10] ***: [2HH]
38: [10:54:10] ***: [HH2-]
38: [10:54:10] ***: [2HH2-]
38: [10:54:10] ***: b1ccccc1
38: [10:54:10] ***: C[Rf]C
38: [10:54:10] ***: [C:1]
38: [10:54:10] ***: [C:0]
38: [10:54:10] ***: [si]1cccc[si]1
38: [10:54:10] ***: [asH]1cccc1
38: [10:54:10] ***: [Db][Sg][Bh][Hs][Mt][Ds][Rg][Cn][Nh][Fl][Mc][Lv][Ts][Og]
38: [10:54:10] ***: [Uun][Uuu][Uub][Uut][Uuq][Uup][Uuh][Uus][Uuo]
38: [10:54:10] ***: ['Db']['Sg']['Bh']['Hs']['Mt']['Ds']['Rg']['Cn']['Nh']['Fl']['Mc']['Lv']['Ts']['Og']
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing molecules which should fail to parse/sanitize.
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing details
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing smiles that were previously problems
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing basic SMILES canonicalization
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 127 (chiral smiles with fused rings)
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 143 (removing chiral tags for non-chiral centers)
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 151 (Chiral centers in rings with hydrogen on them not handled correctly)
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 153 (Incorrect order of ring-closure bonds from SMILES)
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 175 (cis/trans wrong on ring closures)
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 176 (problems with 'mol BOND ring_number')
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 180: Z/E problems
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 159 (cis/trans wrong in some branched systems)
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 184: Cis/Trans incorrect on ring-closure bonds
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 185: Cis/Trans incorrect on writing branches
38: [10:54:10] C(\C)=N\O
38: [10:54:10] CC(/C=P/N)=N\O
38: [10:54:10] N/P=C/C(C)=N/O
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 191: Bad bond directions in a branch
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 256: SMILES yields incorrect structure
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 266: kekulized SMILES output
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing rootedAtAtom functionality
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing isotope handling
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1670149
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1842174: bad bond dirs in branches
38: [10:54:10] F/C=N/Cl
38: [10:54:10] C(\F)=N/Cl
38: [10:54:10] F/C=C/C=C(/Cl)Br
38: [10:54:10] C(/C=C/F)=C(\Cl)Br
38: [10:54:10] O=NC1=NOC(=N\O)/C1=N\O
38: [10:54:10] O/N=C1\COC\C1=N\O
38: [10:54:10] O/N=C1\COC\[N+]1=N\O
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1844959: bad handling of Hs in chiral smiles
38: [10:54:10] --------------------------------------------
38: [10:54:10] C[C@H]1CNOC1
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 157 (Symmetric molecules with multiple chiral centers badly canonicalized)
38: [10:54:10] -**-**---------------------------------------
38: [10:54:10] C1N[C@@H]2CC1CO2
38: [10:54:10] C1N[C@@H]2CC1CO2
38: [10:54:10] C1N[C@@H]2CC1CO2
38: [10:54:10] O=C1NC(=O)C2C1[C@H]1C=C[14C@@H]2C1
38: [10:54:10] O=C1NC(=O)C2C1[C@H]1C=C[14C@@H]2C1
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing handling of stereochemical smiles
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing sf.net bug 1942220
38: [10:54:10] 	done
38: [10:54:10] -----------------------
38:  Testing sf.net issue 3127883 (kekulization failing) 
38: [10:54:10] Finished
38: [10:54:10] -------------------------------------
38: [10:54:10] test adding atom-map information
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3145697 repeated ring labels in disconnected structures
38: [10:54:10] SMILES Parse Error: unclosed ring for input: 'C1.C11.C'
38: [10:54:10] SMILES Parse Error: unclosed ring for input: 'C1C.CC11CCC'
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3152751 cannot roundtrip charged aromatic Se and Te
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing use of replacement patterns in input
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing forcing explicit bonds in the output SMILES
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3139534: stereochemistry in larger rings
38: [10:54:10] smiles: C1=C\COCCCCC/1
38: [10:54:10] smiles: C1=C/CCCCCC/C=C/1
38: [10:54:10] smiles: C1=C\CCCCCC/C=C/1
38: [10:54:10] smiles: C1=C/CCCOC/C=C/1
38: [10:54:10] smiles: C1=C/NCCCCC/1
38: [10:54:10] smiles: C1CCCCN/C=C/1
38: [10:54:10] smiles: CCC/[N+]1=C/c2ccccc2OC(=O)\C=C/1O
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3526815: canonical smiles failure in many symmetric fragments
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3525799: bad smiles for r groups
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3526810: canonical smiles failure in symmetric heterocycles
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3528556: canonical smiles failure in cycle
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] do not repeat ring closure digits on the same atom
38: --C1CCC2(CC1)CCCCC2CCC1CCCC1
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 257: unrecognized bonds are in SMILES as ?s
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing handling of ring stereochemistry
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 45: stereochemistry information influencing non-stereo SMILES
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 206: Problems round-tripping P
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 378: SMILES parser doing the wrong thing for odd dot-disconnected construct
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 389: Add option to SmilesWriter to allow writing of all explicit hydrogens
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1719046: explicit Hs in canonical smiles
38: smi: ClC1CCCCC1
38: smi: ClC1CCCCC1
38: smi: ClC1CCCCC1Br
38: smi: c1ccccc1
38: smi: c1ccncc1
38: smi: c1cc[nH]c1
38: smi: c1cc[nH]c1
38: smi: c1cc[pH]c1
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1844617: oscillating chirality in canonical smiles
38: [10:54:10] CN1CC[C@@]23[C@@H]4CC[C@@H]1[C@]2(O)CCC(=O)[C@@H]3OC4
38: [10:54:10] CN1CC[C@@]23[C@@H]4CC[C@@H]1[C@]2(O)CCC(=O)[C@@H]3OC4
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3C
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3C
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3CC1CC1
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3CC1CC1
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Fragment Smiles
38: CbC(aC)aC
38: CaC(bC)aC
38: CbC(bC)aC
38: O.C
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 12: non-canonical fragment smiles
38: [10:54:10] done
38: [10:54:10] testing smiles writing/canonicalization for modified molecules.
38: [10:54:10] testing github issue 532: _smilesAtomOutputOrder incorrect for dot disconnected molecules
38: [10:54:10] done
38: [10:54:10] testing github issue 786: chiral order for ring closure after branch
38: C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O
38: [10:54:10] done
38: [10:54:10] testing github issue 760: reversed stereochemistry with sulfoxides and ring closures
38: [10:54:10] done
38: [10:54:10] testing dative bond support
38: [10:54:10] done
38: [10:54:10] Stereochemistry not output to SMILES when allHsExplicit=True
38: [10:54:10] done
38: [10:54:10] Testing the SmilesParseParams class
38: [10:54:10] SMILES Parse Error: syntax error for input: 'CCCC the_name'
38: [10:54:10] SMILES Parse Error: syntax error for input: 'CCCC the_name'
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing the %(....) notation for SMILES ring closure numbers
38: 
38: [10:54:10] Test: c1ccccc1 (should be read)
38: [10:54:10] Test: c%(1)ccccc%(1) (should be read)
38: [10:54:10] Test: c%(12)ccccc%(12) (should be read)
38: [10:54:10] Test: c%(123)ccccc%(123) (should be read)
38: [10:54:10] Test: c%(1234)ccccc%(1234) (should be read)
38: [10:54:10] Test: c%(99999)ccccc%(99999) (should be read)
38: [10:54:10] Test: c%()ccccc%() (should NOT be read)
38: [10:54:10] SMILES Parse Error: syntax error for input: 'c%()ccccc%()'
38: [10:54:10] Test: c%(100000)ccccc%(100000) (should NOT be read)
38: [10:54:10] SMILES Parse Error: syntax error for input: 'c%(100000)ccccc%(100000)'
38: [10:54:10] done
 38/130 Test  #38: smiTest1 ...........................   Passed    0.17 sec
test 39
        Start  39: cxsmilesTest

39: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/cxsmilesTest
39: Test timeout computed to be: 9.99988e+06
39: [10:54:10] testing base functionality
39: [10:54:10] done
39: [10:54:10] testing reading 2D coordinates
39: [10:54:10] done
39: [10:54:10] testing reading Atom Labels
39: [10:54:10] done
39: [10:54:10] testing CSXMILES and mol name
39: [10:54:10] done
39: [10:54:10] testing coordinate bonds
39: [10:54:10] done
39: [10:54:10] testing radicals
39: [10:54:10] done
39: [10:54:10] testing atom values
39: [10:54:10] done
39: [10:54:10] testing atom properties
39: [10:54:10] done
 39/130 Test  #39: cxsmilesTest .......................   Passed    0.01 sec
test 40
        Start  40: smaTest1

40: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smaTest1
40: Test timeout computed to be: 9.99988e+06
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing patterns which should parse.
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing patterns which should fail to parse.
40: [10:54:10] 	Expect Parse error messages
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching2
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching3
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching4
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching 5
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching 6
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing Smarts Writer.
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing fragment patterns.
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing former problems
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing Issue 196: Smarts handling of 'aa' incorrect
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing Issue 254: Bad handling of unspecified bonds in SMARTS
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing Issue 255: Core leaks in smarts parsing.  Watch memory consumption.
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 330: problems writing some recursive smarts.
40: [10:54:11] sma: [$(C=O)]
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 351:
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing atom map assignment:
40: [10:54:11] SMARTS Parse Error: syntax error for input: '[C:10H3]CC'
40: [10:54:11] SMARTS Parse Error: syntax error for input: '[C:10:3]ON'
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing cleaner SMARTS -> SMILES 
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing SMILES -> SMARTS
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 1914154: problems with generating smarts for recursive queries
40: [10:54:11] [$(C)&$(O)]
40: [10:54:11] [$(C),$(O)]
40: [10:54:11] [!$(C)&$(O)]
40: [10:54:11] [C&$(C-O)&$(C=O)]
40: [10:54:11] [$(C=O),$(C-O);$(C-N)]
40: [10:54:11] [$(C-N);$(C=O),$(C-O)]
40: [10:54:11] [$(C-N)&$(C=O),$(C-O)]
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing miscellaneous bits of SMARTS writing
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing issue 1804420, missing assignment of atoms maps
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing handling (or lack thereof) of stereochem in smarts (sf.net issue 2738320)
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 2884178 part1: SubstructMatch not returning correct number of matches
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 2884178 part2: SubstructMatch not returning correct number of matches
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 3000399: incorrect behavior of X queries
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing serial numbers in recursive SMARTS queries
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing use of replacement patterns in input
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing github #313: problems with 'h' in SMARTS
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing github #314: problems with 'x' in SMARTS
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 378: SMILES parser doing the wrong thing for odd dot-disconnected construct
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 544: merging query Hs failing on recursive SMARTS
40: [10:54:11] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
40: [10:54:11] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 766: AnyBond specification treated as single when joining rings in SMARTS
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 893: invalid handling of negation of aromaticity when writing SMARTS
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Transuranic matching
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 1338: SMARTS proton query parsed incorrectly
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 1472: MolToSmarts does not include atom map info for molecules built from SMILES
40: [10:54:11] done
 40/130 Test  #40: smaTest1 ...........................   Passed    0.80 sec
test 41
        Start  41: fileParsersTest1

41: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/fileParsersTest1
41: Test timeout computed to be: 9.99988e+06
41: [10:54:11]  ---- Running with POSIX locale ----- 
41: [10:54:11] testing atom query parsing
41: [10:54:11] done
41: [10:54:11] testing bond query parsing
41: [10:54:11] done
41: [10:54:11]  ----------> Test4 
41: [10:54:11]  Finished <---------- 
41: [10:54:11]  ----------> Test5 
41: [10:54:11] testing chirality parsing
41: [10:54:11] done
41: [10:54:11] testing Issue145:
41:  Mol parsing: molecule yields non-canonical smiles from mol block
41: [10:54:11] done
41: [10:54:11] testing Issue148:
41:  Mol files containing mis-drawn nitro groups not properly parsed
41: [10:54:11] done
41: [10:54:11] testing roundtrip chirality parsing
41: [10:54:11] SMI: O[C@H](S)I
41: ***************************************
41: ***************************************
41: [10:54:11] Issue142d.mol
41:      RDKit          3D
41: 
41:   4  3  0  0  0  0  0  0  0  0999 V2000
41:    -0.6675   -0.6843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0196   -0.1648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
41:     0.6675   -0.6517    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0948    0.6843    0.0000 I   0  0  0  0  0  0  0  0  0  0  0  0
41:   2  1  1  1
41:   3  2  1  0
41:   2  4  1  0
41: M  END
41: 
41: [10:54:11] 9 9
41: [10:54:11] done
41: [10:54:11] testing reading without sanitization
41: [10:54:11] done
41: [10:54:11] testing Issue180: bad Z/E assignments
41: [10:54:11] done
41: [10:54:11] testing Issue264: bad stereochemistry from mol files
41: [10:54:11] O=C1Nc2ccc(Br)cc2/C1=N/c1ccccc1
41: [10:54:11] O=C1Nc2ccc(Br)cc2/C1=N\c1ccccc1
41: [10:54:11] done
41: [10:54:11] testing Issue399: bond wedging cleanup
41: [10:54:11] done
41: [10:54:11] testing handling of charge lines
41: [10:54:11] done
41: [10:54:11] testing basic double bond stereochemistry
41: [10:54:11]   sub-test for issue 3099836
41: [10:54:11] done
41: [10:54:11] testing double bonds with symmetric substituents
41: [10:54:11] done
41: [10:54:11] testing double bonds in rings with stereochem specifications
41: [10:54:11] done
41: [10:54:11] testing mol file R-group parsing
41: [10:54:11] done
41: [10:54:11] testing mol file degree queries
41: [10:54:11] done
41: [10:54:11] testing mol file ring-bond count queries
41: [10:54:11] done
41: [10:54:11] testing mol file unsaturation queries
41: [10:54:11] done
41: [10:54:11] testing mol file queries -> SMARTS 
41: [10:54:11] done
41: [10:54:11] testing handling of missing files
41: [10:54:11] done
41: [10:54:11] testing issue Issue1965035: problems with WedgeMolBonds 
41: [10:54:11] done
41: [10:54:11] testing handling of radicals 
41: [10:54:11] done
41: [10:54:11] testing handling of bogus bond orders (issue 2337369)
41: [10:54:11] bond with order 0 found on line 7. This is not part of the MDL specification.
41: [10:54:11] unrecognized query bond type, 9, found on line 7. Using an "any" query.
41: [10:54:11] done
41: [10:54:11] testing handling of atom stereo parity flags
41: [10:54:11] done
41: [10:54:11]  Testing issue 2692246 
41: [10:54:11]  done
41: [10:54:11]  Testing mol blocks without kekulization 
41: [10:54:11]  done
41: [10:54:11] testing atom values in mol files
41: [10:54:11] done
41: [10:54:11] testing handling of A, Q, and * in mol files
41: [10:54:11] done
41: [10:54:11] testing handling of mol files with atom lists and values
41: [10:54:11] done
41: [10:54:11] testing basic handling of v3000 mol files
41: [10:54:11] skipping block at line 25: BEGIN COLLECTION
41: [10:54:11] done
41: [10:54:11]  Testing issue 2963522 
41: [10:54:11]  done
41: [10:54:11]  Testing issue 3073163 
41: [10:54:11]  done
41: [10:54:11]  Testing Issue3154208 (a large mol failure)
41: generating smiles
41: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2
41: converting back
41: check isomorphism
41: [10:54:11] Large molecule canonical smiles test
41: [10:54:11] Iteration: 1 of 50
41: [10:54:11] Iteration: 11 of 50
41: [10:54:12] Iteration: 21 of 50
41: [10:54:12] Iteration: 31 of 50
41: [10:54:12] Iteration: 41 of 50
41: [10:54:13]  done
41: [10:54:13] -------------------------------------
41: [10:54:13] Issue 3228150: round-trip stereochemistry failure
41: [10:54:13]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:13]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:13]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:13]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:13] done
41: [10:54:13] testing writing mol file R-groups (issue 3313540)
41: [10:54:13] done
41: [10:54:13]  ----------> Test issue 3359739 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3374639 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test three-coordinate chirality 
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3375647 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3375684 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test handling of chiral phosphorous 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3392107 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3432136 
41: [10:54:13]  Unhandled CTAB feature: S group MON on line: 14. Molecule skipped.
41: [10:54:13]  Unhandled CTAB feature: S group MON on line 22 on line: 22. Molecule skipped.
41: [10:54:13]  S group SUP ignored on line 35.
41: [10:54:13]  S group SUP ignored on line 28
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3477283 
41: [10:54:13]  deprecated group abbreviation ignored on line 24
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3484552 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3514824 
41: [10:54:13]  Finished <---------- 
41: [10:54:13] -------------------------------------
41: [10:54:13] Issue 3525799: bad smiles for r groups
41: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*]
41: [10:54:13] done
41: [10:54:13] -------------------------------------
41: [10:54:13] Testing skip lines in CTABs
41: [10:54:13] done
41: [10:54:13] -------------------------------------
41: [10:54:13] Bad issue 269: handling of bad atom symbols in CTABs
41: [10:54:13] 
41: 
41: ****
41: Post-condition Violation
41: Element 'Mv' not found
41: Violation occurred on line 90 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PeriodicTable.h
41: Failed Expression: anum > -1
41: ****
41: 
41: [10:54:13] done
41: [10:54:13] testing handling of chiral flags
41: [10:54:13] done
41: [10:54:13] testing handling of mol file valence flags
41: [10:54:13] done
41: [10:54:13] testing github issue 88: M  END not being read from V3K ctabs
41: [10:54:13] done
41: [10:54:13] testing github issue 82: stereochemistry only perceived if sanitization is done
41: [10:54:13] done
41: [10:54:13] testing impact of Hs in mol files on stereochemistry
41: [10:54:13] done
41: [10:54:13] testing reading reactions in mol files
41: [10:54:13] done
41: [10:54:13] testing Github 166: skipping sanitization on reading pdb files
41: [10:54:13] done
41: [10:54:13] testing ZBO parsing
41: [10:54:13] done
41: [10:54:13] testing Github 164: problems with Xe from mol files
41: [10:54:13] done
41: [10:54:13] testing github issue 194: bad bond types from pdb
41: [10:54:13] done
41: [10:54:13] testing github issue 196: left justitified bond topology
41: [10:54:13] done
41: [10:54:13] -------------------------------------
41: [10:54:13] Bad issue 3557676: handling of D and T in CTABs
41: [10:54:13] done
41: [10:54:13] testing basic writing of v3000 mol files
41: [10:54:14] done
41: [10:54:14] testing more queries from v3000 mol files
41: [10:54:14] done
41: [10:54:14] -----------------------
41:  Testing github issue 191: wavy bonds to Hs should affect attached double bond stereochemistry.
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
41: [10:54:14] Finished
41: [10:54:14] testing splitting on PDB residues
41: [10:54:14] done
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 337: No double bond stereo perception from CTABs when sanitization is turned off
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 360: Computed props on non-sanitized molecule interfering with substructure matching
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 741: Support CTABs where the second letter in atom symbols is capitalized
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 188: Bad E/Z assignment from CTAB
41: ----------------------------------
41: ----------------------------------
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing right-aligned elements in RCSB SDF files
41: [10:54:14] 
41: 
41: ****
41: Pre-condition Violation
41: rlabel out of range for MDL files
41: Violation occurred on line 525 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
41: Failed Expression: rlabel >= 0 && rlabel < 100
41: ****
41: 
41: [10:54:14] GetSSSR interrupted by segmentation fault
41: [10:54:14] done
41: [10:54:14] Test github 1034: Squiggle bonds from CTABs lost post-parsing
41: [10:54:14] done
41: [10:54:14] Test github 1049: MolOps::cleanUp() being called by CTAB parser even when sanitization isn't on
41: [10:54:14] done
41: [10:54:14] testing reading pdb files
41: [10:54:16] done
41: [10:54:16] testing reading sequences
41: [10:54:16] Test MDL molfiles with dative bonds (V3000 only)
41: [10:54:16] done
41: [10:54:16] Test github 1251: MolFromMolBlock sanitizing when it should not be
41: [10:54:16] done
41: [10:54:16] Test github 1029: PDB reader fails for arginine explicit hydrogens 
41: [10:54:16] done
41: [10:54:16] Test github 1340: PDB parser creating H-H bonds 
41: [10:54:16] done
41: [10:54:16]  ---- Running with German locale ----- 
41: de_DE.UTF-8
41: [10:54:16] -------------------------------------
41: [10:54:16]     Test multithreading Locale Switching
41: [10:54:16]     Test multithreading (Done)
41: [10:54:16] -------------------------------------
41: [10:54:16] testing atom query parsing
41: [10:54:16] done
41: [10:54:16] testing bond query parsing
41: [10:54:16] done
41: [10:54:16]  ----------> Test4 
41: [10:54:16]  Finished <---------- 
41: [10:54:16]  ----------> Test5 
41: [10:54:16] testing chirality parsing
41: [10:54:16] done
41: [10:54:16] testing Issue145:
41:  Mol parsing: molecule yields non-canonical smiles from mol block
41: [10:54:16] done
41: [10:54:16] testing Issue148:
41:  Mol files containing mis-drawn nitro groups not properly parsed
41: [10:54:16] done
41: [10:54:16] testing roundtrip chirality parsing
41: [10:54:16] SMI: O[C@H](S)I
41: ***************************************
41: ***************************************
41: [10:54:16] Issue142d.mol
41:      RDKit          3D
41: 
41:   4  3  0  0  0  0  0  0  0  0999 V2000
41:    -0.6675   -0.6843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0196   -0.1648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
41:     0.6675   -0.6517    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0948    0.6843    0.0000 I   0  0  0  0  0  0  0  0  0  0  0  0
41:   2  1  1  1
41:   3  2  1  0
41:   2  4  1  0
41: M  END
41: 
41: [10:54:16] 9 9
41: [10:54:16] done
41: [10:54:16] testing reading without sanitization
41: [10:54:16] done
41: [10:54:16] testing Issue180: bad Z/E assignments
41: [10:54:16] done
41: [10:54:16] testing Issue264: bad stereochemistry from mol files
41: [10:54:16] O=C1Nc2ccc(Br)cc2/C1=N/c1ccccc1
41: [10:54:16] O=C1Nc2ccc(Br)cc2/C1=N\c1ccccc1
41: [10:54:16] done
41: [10:54:16] testing Issue399: bond wedging cleanup
41: [10:54:16] done
41: [10:54:16] testing handling of charge lines
41: [10:54:16] done
41: [10:54:16] testing basic double bond stereochemistry
41: [10:54:16]   sub-test for issue 3099836
41: [10:54:16] done
41: [10:54:16] testing double bonds with symmetric substituents
41: [10:54:16] done
41: [10:54:16] testing double bonds in rings with stereochem specifications
41: [10:54:16] done
41: [10:54:16] testing mol file R-group parsing
41: [10:54:16] done
41: [10:54:16] testing mol file degree queries
41: [10:54:16] done
41: [10:54:16] testing mol file ring-bond count queries
41: [10:54:16] done
41: [10:54:16] testing mol file unsaturation queries
41: [10:54:16] done
41: [10:54:16] testing mol file queries -> SMARTS 
41: [10:54:16] done
41: [10:54:16] testing handling of missing files
41: [10:54:16] done
41: [10:54:16] testing issue Issue1965035: problems with WedgeMolBonds 
41: [10:54:16] done
41: [10:54:16] testing handling of radicals 
41: [10:54:16] done
41: [10:54:16] testing handling of bogus bond orders (issue 2337369)
41: [10:54:16] bond with order 0 found on line 7. This is not part of the MDL specification.
41: [10:54:16] unrecognized query bond type, 9, found on line 7. Using an "any" query.
41: [10:54:16] done
41: [10:54:16] testing handling of atom stereo parity flags
41: [10:54:16] done
41: [10:54:16]  Testing issue 2692246 
41: [10:54:16]  done
41: [10:54:16]  Testing mol blocks without kekulization 
41: [10:54:16]  done
41: [10:54:16] testing atom values in mol files
41: [10:54:16] done
41: [10:54:16] testing handling of A, Q, and * in mol files
41: [10:54:16] done
41: [10:54:16] testing handling of mol files with atom lists and values
41: [10:54:16] done
41: [10:54:16] testing basic handling of v3000 mol files
41: [10:54:16] skipping block at line 25: BEGIN COLLECTION
41: [10:54:16] done
41: [10:54:16]  Testing issue 2963522 
41: [10:54:16]  done
41: [10:54:16]  Testing issue 3073163 
41: [10:54:16]  done
41: [10:54:16]  Testing Issue3154208 (a large mol failure)
41: generating smiles
41: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2
41: converting back
41: check isomorphism
41: [10:54:16] Large molecule canonical smiles test
41: [10:54:16] Iteration: 1 of 50
41: [10:54:16] Iteration: 11 of 50
41: [10:54:17] Iteration: 21 of 50
41: [10:54:17] Iteration: 31 of 50
41: [10:54:18] Iteration: 41 of 50
41: [10:54:18]  done
41: [10:54:18] -------------------------------------
41: [10:54:18] Issue 3228150: round-trip stereochemistry failure
41: [10:54:18]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:18]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:18]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:18]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:18] done
41: [10:54:18] testing writing mol file R-groups (issue 3313540)
41: [10:54:18] done
41: [10:54:18]  ----------> Test issue 3359739 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3374639 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test three-coordinate chirality 
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3375647 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3375684 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test handling of chiral phosphorous 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3392107 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3432136 
41: [10:54:18]  Unhandled CTAB feature: S group MON on line: 14. Molecule skipped.
41: [10:54:18]  Unhandled CTAB feature: S group MON on line 22 on line: 22. Molecule skipped.
41: [10:54:18]  S group SUP ignored on line 35.
41: [10:54:18]  S group SUP ignored on line 28
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3477283 
41: [10:54:18]  deprecated group abbreviation ignored on line 24
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3484552 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3514824 
41: [10:54:18]  Finished <---------- 
41: [10:54:18] -------------------------------------
41: [10:54:18] Issue 3525799: bad smiles for r groups
41: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*]
41: [10:54:18] done
41: [10:54:18] -------------------------------------
41: [10:54:18] Testing skip lines in CTABs
41: [10:54:18] done
41: [10:54:18] -------------------------------------
41: [10:54:18] Bad issue 269: handling of bad atom symbols in CTABs
41: [10:54:18] 
41: 
41: ****
41: Post-condition Violation
41: Element 'Mv' not found
41: Violation occurred on line 90 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PeriodicTable.h
41: Failed Expression: anum > -1
41: ****
41: 
41: [10:54:18] done
41: [10:54:18] testing handling of chiral flags
41: [10:54:18] done
41: [10:54:18] testing handling of mol file valence flags
41: [10:54:18] done
41: [10:54:18] testing github issue 88: M  END not being read from V3K ctabs
41: [10:54:18] done
41: [10:54:18] testing github issue 82: stereochemistry only perceived if sanitization is done
41: [10:54:18] done
41: [10:54:18] testing impact of Hs in mol files on stereochemistry
41: [10:54:18] done
41: [10:54:18] testing reading reactions in mol files
41: [10:54:18] done
41: [10:54:18] testing Github 166: skipping sanitization on reading pdb files
41: [10:54:18] done
41: [10:54:18] testing ZBO parsing
41: [10:54:18] done
41: [10:54:18] testing Github 164: problems with Xe from mol files
41: [10:54:18] done
41: [10:54:18] testing github issue 194: bad bond types from pdb
41: [10:54:18] done
41: [10:54:18] testing github issue 196: left justitified bond topology
41: [10:54:18] done
41: [10:54:18] -------------------------------------
41: [10:54:18] Bad issue 3557676: handling of D and T in CTABs
41: [10:54:18] done
41: [10:54:18] testing basic writing of v3000 mol files
41: [10:54:19] done
41: [10:54:19] testing more queries from v3000 mol files
41: [10:54:19] done
41: [10:54:19] -----------------------
41:  Testing github issue 191: wavy bonds to Hs should affect attached double bond stereochemistry.
41: [10:54:19] Finished
41: [10:54:19] -------------------------------------
41: [10:54:19] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
41: [10:54:19] Finished
41: [10:54:19] testing splitting on PDB residues
41: [10:54:20] done
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing Github 337: No double bond stereo perception from CTABs when sanitization is turned off
41: [10:54:20] Finished
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing Github 360: Computed props on non-sanitized molecule interfering with substructure matching
41: [10:54:20] Finished
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing Github 741: Support CTABs where the second letter in atom symbols is capitalized
41: [10:54:20] Finished
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing Github 188: Bad E/Z assignment from CTAB
41: ----------------------------------
41: ----------------------------------
41: [10:54:20] Finished
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing right-aligned elements in RCSB SDF files
41: [10:54:20] 
41: 
41: ****
41: Pre-condition Violation
41: rlabel out of range for MDL files
41: Violation occurred on line 525 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
41: Failed Expression: rlabel >= 0 && rlabel < 100
41: ****
41: 
41: [10:54:20] GetSSSR interrupted by segmentation fault
41: [10:54:20] done
41: [10:54:20] Test github 1034: Squiggle bonds from CTABs lost post-parsing
41: [10:54:20] done
41: [10:54:20] Test github 1049: MolOps::cleanUp() being called by CTAB parser even when sanitization isn't on
41: [10:54:20] done
41: [10:54:20] testing reading pdb files
41: [10:54:21] done
41: [10:54:21] testing reading sequences
41: [10:54:21] Test MDL molfiles with dative bonds (V3000 only)
41: [10:54:21] done
41: [10:54:21] Test github 1251: MolFromMolBlock sanitizing when it should not be
41: [10:54:21] done
41: [10:54:21] Test github 1029: PDB reader fails for arginine explicit hydrogens 
41: [10:54:21] done
41: [10:54:21] Test github 1340: PDB parser creating H-H bonds 
41: [10:54:21] done
 41/130 Test  #41: fileParsersTest1 ...................   Passed   10.29 sec
test 42
        Start  42: testMolSupplier

42: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolSupplier
42: Test timeout computed to be: 9.99988e+06
42: [10:54:21] 
42: -----------------------------------------
42: [10:54:21] Finished: testMolSup()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testRandMolSup()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSmilesSup()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] ------------------------------------------------------
42: [10:54:21] SMILES Parse Error: syntax error for input: 'fail'
42: [10:54:21] ERROR: Smiles parse error on line 3
42: [10:54:21] ERROR: Cannot create molecule from : 'fail'
42: [10:54:21] ------------------------------------------------------
42: [10:54:21] ------------------------------------------------------
42: [10:54:21] >>> This may result in an infinite loop.  It should finish almost immediately:
42: [10:54:21] <<< done.
42: [10:54:21] Finished: testSmilesSupFromText()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSmilesWriter()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] 48
42: [10:54:21] 78
42: [10:54:21] 128
42: [10:54:21] 163
42: [10:54:21] 164
42: [10:54:21] 170
42: [10:54:21] 180
42: [10:54:21] 186
42: [10:54:21] 192
42: [10:54:21] 203
42: [10:54:21] 210
42: [10:54:21] 211
42: [10:54:21] 213
42: [10:54:21] 220
42: [10:54:21] 229
42: [10:54:21] 256
42: [10:54:21] 16
42: [10:54:21] Finished: testSDWriter()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSDSupplierEnding()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSuppliersEmptyFile()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testCisTrans()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testStereoRound()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testIssue226()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testTDTSupplier1()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testTDTSupplier2()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testTDTSupplier3()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSDSupplierFromText()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Spurious data before the first property will be ignored
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Finished: testSDSupplierStrLax1()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Finished: testSDSupplierStrLax2()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Spurious data before the first property will be ignored
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Finished: testSDSupplierFromTextStrLax1()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Finished: testSDSupplierFromTextStrLax2()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testIssue265()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: End of data field name not found
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Explicit valence for atom # 0 F, 2, is greater than permitted
42: [10:54:21] ERROR: Could not sanitize molecule ending on line 16
42: [10:54:21] ERROR: Explicit valence for atom # 0 F, 2, is greater than permitted
42: [10:54:21] ERROR: Atom line too short: '  1  2  1  0  0  0  0' on line 12
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: Bond line too short: 'M  END' on line 18
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Finished: testSDErrorHandling()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testIssue381()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSetStreamIndices()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testMixIterAndRandom()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: build:
42: [10:54:21] Finished: testRemoveHs()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testGetItemText()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testForwardSDSupplier()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testMissingCRSDSupplier()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testIssue3482695()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 75. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 245. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 324. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 537. Molecule skipped.
42: [10:54:21] ERROR: Cannot convert     to int on line 558
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 884. Molecule skipped.
42: [10:54:21] Finished: testIssue3525673()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testBlankLinesInProps()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSkipLines()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testGitHub23()
42: [10:54:21] -----------------------------------------
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testGitHub88()
42: [10:54:21] -----------------------------------------
42: 
 42/130 Test  #42: testMolSupplier ....................   Passed    0.28 sec
test 43
        Start  43: testMolWriter

43: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolWriter
43: Test timeout computed to be: 9.99988e+06
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriter()
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriter2()
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriterNoNames()
43: [10:54:21] SMILES Parse Error: syntax error for input: 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] ERROR: Smiles parse error on line 1
43: [10:54:21] ERROR: Cannot create molecule from : 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriterClose()
43: [10:54:21] SMILES Parse Error: syntax error for input: 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] ERROR: Smiles parse error on line 1
43: [10:54:21] ERROR: Cannot create molecule from : 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSDWriter()
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testTDTWriter()
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriterStrm()
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSDWriterStrm()
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testTDTWriterStrm()
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSDMemoryCorruption()
43: [10:54:22] Finished
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] Running testIssue265()
43: [10:54:22] Finished
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] Running testMolFileChiralFlag()
43: [10:54:22] Finished
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing handling of mol file valence flags
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing handling of mol files with reactions
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing handling of ZBO specs
43: MOLBLOCK:
43: 
43:      RDKit          2D
43: 
43:  11 10  0  0  0  0  0  0  0  0999 V2000
43:    -0.3380    0.2050    0.0000 Fe  0  0  0  0  0  0  0  0  0  0  0  0
43:     0.4870    0.2050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.0524   -0.2075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.0524    0.6175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:     1.3120    0.2050    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.7669   -0.6200    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.7669    1.0300    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380    1.0300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380   -0.6200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380    1.8550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380   -1.4450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:   1  2  1  0
43:   1  3  1  0
43:   1  4  1  0
43:   2  5  2  0
43:   3  6  2  0
43:   4  7  2  0
43:   1  8  1  0
43:   1  9  1  0
43:   8 10  2  0
43:   9 11  2  0
43: M  ZBO  5   1   0   2   0   3   0   7   0   8   0
43: M  HYD  6   1   0   2   2   3   2   4   2   8   2   9   2
43: M  END
43: ------
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] testing SDWriter options
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing details of v3000 writing
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 187: A not written to mol block
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 186: chiral S not written to ctab
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 189: Problems round-tripping Al2Cl6 via CTAB
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 266: Bond query information written to CTAB
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 268: Bond topology information written to CTAB
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 357: Hydrogens in mol blocks have a valence value set
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing test needsUpdatePropertyCache functionality in SDwriter
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] Running testIssue3525000()
43: [10:54:22] Finished
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 488: SmilesWriter not creating automatic name values for molecules read from CTABs
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 611: If wedged bonds are already present, write them to mol blocks
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing SDWriter::getText()
43: [10:54:22] -----------------------------------------
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing molfile writer dative bond support
43: [10:54:22] -----------------------------------------
43: 
 43/130 Test  #43: testMolWriter ......................   Passed    0.26 sec
test 44
        Start  44: testTplParser

44: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testTplParser
44: Test timeout computed to be: 9.99988e+06
44: [10:54:22] testing basic tpl parsing
44: [10:54:22] done
44: [10:54:22] testing tpl writing
44: [10:54:22] done
 44/130 Test  #44: testTplParser ......................   Passed    0.02 sec
test 45
        Start  45: testMol2ToMol

45: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMol2ToMol
45: Test timeout computed to be: 9.99988e+06
45: [10:54:22] ---------------------------------------
45: [10:54:22] -- testing general mol2 file parsing --
45: [10:54:22] ---------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE general mol2 file parsing --
45: [10:54:22] ------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] -- testing subst arom groups in mol2 --
45: [10:54:22] ---------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE subst arom groups in mol2 --
45: [10:54:22] ------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] -- testing issue 3399798             --
45: [10:54:22] ---------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE                           --
45: [10:54:22] ------------------------------------
45: [10:54:22] -----------------------------------
45: [10:54:22] -- testing GitHub issue #114     --
45: [10:54:22] -----------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE                           --
45: [10:54:22] ------------------------------------
45: [10:54:22] -----------------------------------
45: [10:54:22] -- testing GitHub issue #438: problems with metals in mol2 files  --
45: [10:54:22] -----------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE                           --
45: [10:54:22] ------------------------------------
 45/130 Test  #45: testMol2ToMol ......................   Passed    0.04 sec
test 46
        Start  46: testSequence

46: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testSequence
46: Test timeout computed to be: 9.99988e+06
46:   Sequence: GREG
46:   HELM: PEPTIDE1{G.R.E.G}$$$$
46:   Smiles: N=C(N)NCCC[C@H](NC(=O)CN)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)O
46:   PDB:
46: ATOM      1  N   GLY A   1       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      2  CA  GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      3  C   GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      4  O   GLY A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      5  N   ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      6  CA  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      7  C   ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      8  O   ARG A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      9  CB  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     10  CG  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     11  CD  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     12  NE  ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     13  CZ  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     14  NH1 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     15  NH2 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     16  N   GLU A   3       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     17  CA  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     18  C   GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     19  O   GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     20  CB  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     21  CG  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     22  CD  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     23  OE1 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     24  OE2 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     25  N   GLY A   4       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     26  CA  GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     27  C   GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     28  O   GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     29  OXT GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: CONECT    1    2
46: CONECT    2    3
46: CONECT    3    4    4    5
46: CONECT    5    6
46: CONECT    6    7    9
46: CONECT    7    8    8   16
46: CONECT    9   10
46: CONECT   10   11
46: CONECT   11   12
46: CONECT   12   13
46: CONECT   13   14   14   15
46: CONECT   16   17
46: CONECT   17   18   20
46: CONECT   18   19   19   25
46: CONECT   20   21
46: CONECT   21   22
46: CONECT   22   23   23   24
46: CONECT   25   26
46: CONECT   26   27
46: CONECT   27   28   28   29
46: END
46: 
46:   Sequence: TTCCPSIVARSNFNVCRLPGTPEAICATYTGCIIIPGATCPGDYAN
46:   HELM: PEPTIDE1{T.T.C.C.P.S.I.V.A.R.S.N.F.N.V.C.R.L.P.G.T.P.E.A.I.C.A.T.Y.T.G.C.I.I.I.P.G.A.T.C.P.G.D.Y.A.N}$$$$
46:   Smiles: CC[C@H](C)[C@H](NC(=O)[C@H](C)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](NC(=O)CNC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CS)NC(=O)[C@@H](NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CO)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CS)NC(=O)[C@H](CS)NC(=O)[C@@H](NC(=O)[C@@H](N)[C@@H](C)O)[C@@H](C)O)[C@@H](C)CC)C(C)C)C(C)C)[C@@H](C)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](CS)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(N)=O)C(=O)O)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)O
46:   PDB:
46: ATOM      1  N   THR A   1       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      2  CA  THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      3  C   THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      4  O   THR A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      5  CB  THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      6  OG1 THR A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      7  CG2 THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      8  N   THR A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      9  CA  THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     10  C   THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     11  O   THR A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     12  CB  THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     13  OG1 THR A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     14  CG2 THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     15  N   CYS A   3       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     16  CA  CYS A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     17  C   CYS A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     18  O   CYS A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     19  CB  CYS A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     20  SG  CYS A   3       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM     21  N   CYS A   4       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     22  CA  CYS A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     23  C   CYS A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     24  O   CYS A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     25  CB  CYS A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     26  SG  CYS A   4       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM     27  N   PRO A   5       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     28  CA  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     29  C   PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     30  O   PRO A   5       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     31  CB  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     32  CG  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     33  CD  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     34  N   SER A   6       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     35  CA  SER A   6       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     36  C   SER A   6       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     37  O   SER A   6       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     38  CB  SER A   6       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     39  OG  SER A   6       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     40  N   ILE A   7       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     41  CA  ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     42  C   ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     43  O   ILE A   7       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     44  CB  ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     45  CG1 ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     46  CG2 ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     47  CD1 ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     48  N   VAL A   8       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     49  CA  VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     50  C   VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     51  O   VAL A   8       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     52  CB  VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     53  CG1 VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     54  CG2 VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     55  N   ALA A   9       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     56  CA  ALA A   9       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     57  C   ALA A   9       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     58  O   ALA A   9       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     59  CB  ALA A   9       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     60  N   ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     61  CA  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     62  C   ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     63  O   ARG A  10       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     64  CB  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     65  CG  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     66  CD  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     67  NE  ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     68  CZ  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     69  NH1 ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     70  NH2 ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     71  N   SER A  11       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     72  CA  SER A  11       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     73  C   SER A  11       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     74  O   SER A  11       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     75  CB  SER A  11       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     76  OG  SER A  11       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     77  N   ASN A  12       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     78  CA  ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     79  C   ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     80  O   ASN A  12       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     81  CB  ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     82  CG  ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     83  OD1 ASN A  12       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     84  ND2 ASN A  12       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     85  N   PHE A  13       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     86  CA  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     87  C   PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     88  O   PHE A  13       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     89  CB  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     90  CG  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     91  CD1 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     92  CD2 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     93  CE1 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     94  CE2 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     95  CZ  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     96  N   ASN A  14       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     97  CA  ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     98  C   ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     99  O   ASN A  14       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    100  CB  ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    101  CG  ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    102  OD1 ASN A  14       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    103  ND2 ASN A  14       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    104  N   VAL A  15       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    105  CA  VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    106  C   VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    107  O   VAL A  15       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    108  CB  VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    109  CG1 VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    110  CG2 VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    111  N   CYS A  16       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    112  CA  CYS A  16       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    113  C   CYS A  16       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    114  O   CYS A  16       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    115  CB  CYS A  16       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    116  SG  CYS A  16       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    117  N   ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    118  CA  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    119  C   ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    120  O   ARG A  17       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    121  CB  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    122  CG  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    123  CD  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    124  NE  ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    125  CZ  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    126  NH1 ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    127  NH2 ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    128  N   LEU A  18       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    129  CA  LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    130  C   LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    131  O   LEU A  18       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    132  CB  LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    133  CG  LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    134  CD1 LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    135  CD2 LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    136  N   PRO A  19       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    137  CA  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    138  C   PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    139  O   PRO A  19       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    140  CB  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    141  CG  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    142  CD  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    143  N   GLY A  20       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    144  CA  GLY A  20       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    145  C   GLY A  20       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    146  O   GLY A  20       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    147  N   THR A  21       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    148  CA  THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    149  C   THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    150  O   THR A  21       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    151  CB  THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    152  OG1 THR A  21       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    153  CG2 THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    154  N   PRO A  22       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    155  CA  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    156  C   PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    157  O   PRO A  22       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    158  CB  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    159  CG  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    160  CD  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    161  N   GLU A  23       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    162  CA  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    163  C   GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    164  O   GLU A  23       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    165  CB  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    166  CG  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    167  CD  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    168  OE1 GLU A  23       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    169  OE2 GLU A  23       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    170  N   ALA A  24       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    171  CA  ALA A  24       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    172  C   ALA A  24       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    173  O   ALA A  24       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    174  CB  ALA A  24       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    175  N   ILE A  25       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    176  CA  ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    177  C   ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    178  O   ILE A  25       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    179  CB  ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    180  CG1 ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    181  CG2 ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    182  CD1 ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    183  N   CYS A  26       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    184  CA  CYS A  26       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    185  C   CYS A  26       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    186  O   CYS A  26       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    187  CB  CYS A  26       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    188  SG  CYS A  26       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    189  N   ALA A  27       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    190  CA  ALA A  27       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    191  C   ALA A  27       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    192  O   ALA A  27       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    193  CB  ALA A  27       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    194  N   THR A  28       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    195  CA  THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    196  C   THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    197  O   THR A  28       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    198  CB  THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    199  OG1 THR A  28       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    200  CG2 THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    201  N   TYR A  29       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    202  CA  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    203  C   TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    204  O   TYR A  29       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    205  CB  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    206  CG  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    207  CD1 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    208  CD2 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    209  CE1 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    210  CE2 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    211  CZ  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    212  OH  TYR A  29       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    213  N   THR A  30       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    214  CA  THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    215  C   THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    216  O   THR A  30       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    217  CB  THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    218  OG1 THR A  30       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    219  CG2 THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    220  N   GLY A  31       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    221  CA  GLY A  31       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    222  C   GLY A  31       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    223  O   GLY A  31       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    224  N   CYS A  32       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    225  CA  CYS A  32       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    226  C   CYS A  32       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    227  O   CYS A  32       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    228  CB  CYS A  32       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    229  SG  CYS A  32       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    230  N   ILE A  33       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    231  CA  ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    232  C   ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    233  O   ILE A  33       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    234  CB  ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    235  CG1 ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    236  CG2 ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    237  CD1 ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    238  N   ILE A  34       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    239  CA  ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    240  C   ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    241  O   ILE A  34       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    242  CB  ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    243  CG1 ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    244  CG2 ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    245  CD1 ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    246  N   ILE A  35       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    247  CA  ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    248  C   ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    249  O   ILE A  35       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    250  CB  ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    251  CG1 ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    252  CG2 ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    253  CD1 ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    254  N   PRO A  36       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    255  CA  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    256  C   PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    257  O   PRO A  36       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    258  CB  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    259  CG  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    260  CD  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    261  N   GLY A  37       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    262  CA  GLY A  37       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    263  C   GLY A  37       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    264  O   GLY A  37       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    265  N   ALA A  38       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    266  CA  ALA A  38       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    267  C   ALA A  38       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    268  O   ALA A  38       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    269  CB  ALA A  38       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    270  N   THR A  39       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    271  CA  THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    272  C   THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    273  O   THR A  39       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    274  CB  THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    275  OG1 THR A  39       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    276  CG2 THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    277  N   CYS A  40       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    278  CA  CYS A  40       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    279  C   CYS A  40       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    280  O   CYS A  40       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    281  CB  CYS A  40       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    282  SG  CYS A  40       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    283  N   PRO A  41       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    284  CA  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    285  C   PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    286  O   PRO A  41       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    287  CB  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    288  CG  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    289  CD  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    290  N   GLY A  42       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    291  CA  GLY A  42       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    292  C   GLY A  42       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    293  O   GLY A  42       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    294  N   ASP A  43       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    295  CA  ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    296  C   ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    297  O   ASP A  43       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    298  CB  ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    299  CG  ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    300  OD1 ASP A  43       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    301  OD2 ASP A  43       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    302  N   TYR A  44       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    303  CA  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    304  C   TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    305  O   TYR A  44       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    306  CB  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    307  CG  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    308  CD1 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    309  CD2 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    310  CE1 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    311  CE2 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    312  CZ  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    313  OH  TYR A  44       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    314  N   ALA A  45       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    315  CA  ALA A  45       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    316  C   ALA A  45       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    317  O   ALA A  45       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    318  CB  ALA A  45       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    319  N   ASN A  46       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    320  CA  ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    321  C   ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    322  O   ASN A  46       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    323  CB  ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    324  CG  ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    325  OD1 ASN A  46       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    326  ND2 ASN A  46       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    327  OXT ASN A  46       0.000   0.000   0.000  0.00  0.00           O  
46: CONECT    1    2
46: CONECT    2    3    5
46: CONECT    3    4    4    8
46: CONECT    5    6    7
46: CONECT    8    9
46: CONECT    9   10   12
46: CONECT   10   11   11   15
46: CONECT   12   13   14
46: CONECT   15   16
46: CONECT   16   17   19
46: CONECT   17   18   18   21
46: CONECT   19   20
46: CONECT   21   22
46: CONECT   22   23   25
46: CONECT   23   24   24   27
46: CONECT   25   26
46: CONECT   27   28   33
46: CONECT   28   29   31
46: CONECT   29   30   30   34
46: CONECT   31   32
46: CONECT   32   33
46: CONECT   34   35
46: CONECT   35   36   38
46: CONECT   36   37   37   40
46: CONECT   38   39
46: CONECT   40   41
46: CONECT   41   42   44
46: CONECT   42   43   43   48
46: CONECT   44   45   46
46: CONECT   46   47
46: CONECT   48   49
46: CONECT   49   50   52
46: CONECT   50   51   51   55
46: CONECT   52   53   54
46: CONECT   55   56
46: CONECT   56   57   59
46: CONECT   57   58   58   60
46: CONECT   60   61
46: CONECT   61   62   64
46: CONECT   62   63   63   71
46: CONECT   64   65
46: CONECT   65   66
46: CONECT   66   67
46: CONECT   67   68
46: CONECT   68   69   69   70
46: CONECT   71   72
46: CONECT   72   73   75
46: CONECT   73   74   74   77
46: CONECT   75   76
46: CONECT   77   78
46: CONECT   78   79   81
46: CONECT   79   80   80   85
46: CONECT   81   82
46: CONECT   82   83   83   84
46: CONECT   85   86
46: CONECT   86   87   89
46: CONECT   87   88   88   96
46: CONECT   89   90
46: CONECT   90   91   91   92
46: CONECT   91   93
46: CONECT   92   94   94
46: CONECT   93   95   95
46: CONECT   94   95
46: CONECT   96   97
46: CONECT   97   98  100
46: CONECT   98   99   99  104
46: CONECT  100  101
46: CONECT  101  102  102  103
46: CONECT  104  105
46: CONECT  105  106  108
46: CONECT  106  107  107  111
46: CONECT  108  109  110
46: CONECT  111  112
46: CONECT  112  113  115
46: CONECT  113  114  114  117
46: CONECT  115  116
46: CONECT  117  118
46: CONECT  118  119  121
46: CONECT  119  120  120  128
46: CONECT  121  122
46: CONECT  122  123
46: CONECT  123  124
46: CONECT  124  125
46: CONECT  125  126  126  127
46: CONECT  128  129
46: CONECT  129  130  132
46: CONECT  130  131  131  136
46: CONECT  132  133
46: CONECT  133  134  135
46: CONECT  136  137  142
46: CONECT  137  138  140
46: CONECT  138  139  139  143
46: CONECT  140  141
46: CONECT  141  142
46: CONECT  143  144
46: CONECT  144  145
46: CONECT  145  146  146  147
46: CONECT  147  148
46: CONECT  148  149  151
46: CONECT  149  150  150  154
46: CONECT  151  152  153
46: CONECT  154  155  160
46: CONECT  155  156  158
46: CONECT  156  157  157  161
46: CONECT  158  159
46: CONECT  159  160
46: CONECT  161  162
46: CONECT  162  163  165
46: CONECT  163  164  164  170
46: CONECT  165  166
46: CONECT  166  167
46: CONECT  167  168  168  169
46: CONECT  170  171
46: CONECT  171  172  174
46: CONECT  172  173  173  175
46: CONECT  175  176
46: CONECT  176  177  179
46: CONECT  177  178  178  183
46: CONECT  179  180  181
46: CONECT  181  182
46: CONECT  183  184
46: CONECT  184  185  187
46: CONECT  185  186  186  189
46: CONECT  187  188
46: CONECT  189  190
46: CONECT  190  191  193
46: CONECT  191  192  192  194
46: CONECT  194  195
46: CONECT  195  196  198
46: CONECT  196  197  197  201
46: CONECT  198  199  200
46: CONECT  201  202
46: CONECT  202  203  205
46: CONECT  203  204  204  213
46: CONECT  205  206
46: CONECT  206  207  207  208
46: CONECT  207  209
46: CONECT  208  210  210
46: CONECT  209  211  211
46: CONECT  210  211
46: CONECT  211  212
46: CONECT  213  214
46: CONECT  214  215  217
46: CONECT  215  216  216  220
46: CONECT  217  218  219
46: CONECT  220  221
46: CONECT  221  222
46: CONECT  222  223  223  224
46: CONECT  224  225
46: CONECT  225  226  228
46: CONECT  226  227  227  230
46: CONECT  228  229
46: CONECT  230  231
46: CONECT  231  232  234
46: CONECT  232  233  233  238
46: CONECT  234  235  236
46: CONECT  236  237
46: CONECT  238  239
46: CONECT  239  240  242
46: CONECT  240  241  241  246
46: CONECT  242  243  244
46: CONECT  244  245
46: CONECT  246  247
46: CONECT  247  248  250
46: CONECT  248  249  249  254
46: CONECT  250  251  252
46: CONECT  252  253
46: CONECT  254  255  260
46: CONECT  255  256  258
46: CONECT  256  257  257  261
46: CONECT  258  259
46: CONECT  259  260
46: CONECT  261  262
46: CONECT  262  263
46: CONECT  263  264  264  265
46: CONECT  265  266
46: CONECT  266  267  269
46: CONECT  267  268  268  270
46: CONECT  270  271
46: CONECT  271  272  274
46: CONECT  272  273  273  277
46: CONECT  274  275  276
46: CONECT  277  278
46: CONECT  278  279  281
46: CONECT  279  280  280  283
46: CONECT  281  282
46: CONECT  283  284  289
46: CONECT  284  285  287
46: CONECT  285  286  286  290
46: CONECT  287  288
46: CONECT  288  289
46: CONECT  290  291
46: CONECT  291  292
46: CONECT  292  293  293  294
46: CONECT  294  295
46: CONECT  295  296  298
46: CONECT  296  297  297  302
46: CONECT  298  299
46: CONECT  299  300  300  301
46: CONECT  302  303
46: CONECT  303  304  306
46: CONECT  304  305  305  314
46: CONECT  306  307
46: CONECT  307  308  308  309
46: CONECT  308  310
46: CONECT  309  311  311
46: CONECT  310  312  312
46: CONECT  311  312
46: CONECT  312  313
46: CONECT  314  315
46: CONECT  315  316  318
46: CONECT  316  317  317  319
46: CONECT  319  320
46: CONECT  320  321  323
46: CONECT  321  322  322  327
46: CONECT  323  324
46: CONECT  324  325  325  326
46: END
46: 
46:   Sequence: GREG
46:   HELM: PEPTIDE1{G.R.E.G}$$$$
46:   Smiles: N=C(N)NCCC[C@H](NC(=O)CN)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)O
46:   PDB:
46: ATOM      1  N   GLY A   1       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      2  CA  GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      3  C   GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      4  O   GLY A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      5  N   ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      6  CA  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      7  C   ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      8  O   ARG A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      9  CB  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     10  CG  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     11  CD  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     12  NE  ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     13  CZ  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     14  NH1 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     15  NH2 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     16  N   GLU A   3       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     17  CA  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     18  C   GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     19  O   GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     20  CB  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     21  CG  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     22  CD  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     23  OE1 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     24  OE2 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     25  N   GLY A   4       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     26  CA  GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     27  C   GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     28  O   GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     29  OXT GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: CONECT    1    2
46: CONECT    2    3
46: CONECT    3    4    4    5
46: CONECT    5    6
46: CONECT    6    7    9
46: CONECT    7    8    8   16
46: CONECT    9   10
46: CONECT   10   11
46: CONECT   11   12
46: CONECT   12   13
46: CONECT   13   14   14   15
46: CONECT   16   17
46: CONECT   17   18   20
46: CONECT   18   19   19   25
46: CONECT   20   21
46: CONECT   21   22
46: CONECT   22   23   23   24
46: CONECT   25   26
46: CONECT   26   27
46: CONECT   27   28   28   29
46: END
46: 
46:   Sequence: CYIQNCPLG
46:   HELM: PEPTIDE1{C.Y.I.Q.N.C.P.L.G.[am]}$PEPTIDE1,PEPTIDE1,1:R3-6:R3$$$
46:   Smiles: CC[C@H](C)[C@@H]1NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@@H](N)CSSC[C@@H](C(=O)N2CCC[C@H]2C(=O)N[C@@H](CC(C)C)C(=O)NCC(N)=O)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CCC(N)=O)NC1=O
46:   PDB:
46: ATOM      1  N   CYS A   1       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM      2  CA  CYS A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      3  C   CYS A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      4  O   CYS A   1       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM      5  CB  CYS A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      6  SG  CYS A   1       0.000   0.000   0.000 -0.00  0.00           S  
46: ATOM      7  N   TYR A   2       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM      8  CA  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      9  C   TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     10  O   TYR A   2       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     11  CB  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     12  CG  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     13  CD1 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     14  CD2 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     15  CE1 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     16  CE2 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     17  CZ  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     18  OH  TYR A   2       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     19  N   ILE A   3       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     20  CA  ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     21  C   ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     22  O   ILE A   3       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     23  CB  ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     24  CG1 ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     25  CG2 ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     26  CD1 ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     27  N   GLN A   4       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     28  CA  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     29  C   GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     30  O   GLN A   4       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     31  CB  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     32  CG  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     33  CD  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     34  OE1 GLN A   4       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     35  NE2 GLN A   4       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     36  N   ASN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     37  CA  ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     38  C   ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     39  O   ASN A   5       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     40  CB  ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     41  CG  ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     42  OD1 ASN A   5       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     43  ND2 ASN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     44  N   CYS A   6       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     45  CA  CYS A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     46  C   CYS A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     47  O   CYS A   6       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     48  CB  CYS A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     49  SG  CYS A   6       0.000   0.000   0.000 -0.00  0.00           S  
46: ATOM     50  N   PRO A   7       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     51  CA  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     52  C   PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     53  O   PRO A   7       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     54  CB  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     55  CG  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     56  CD  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     57  N   LEU A   8       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     58  CA  LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     59  C   LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     60  O   LEU A   8       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     61  CB  LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     62  CG  LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     63  CD1 LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     64  CD2 LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     65  N   GLY A   9       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     66  CA  GLY A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     67  C   GLY A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     68  O   GLY A   9       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   69  N   NH2 A  10       0.000   0.000   0.000 -0.00  0.00           N  
46: CONECT    1    2
46: CONECT    2    3    5
46: CONECT    3    4    4    7
46: CONECT    5    6
46: CONECT    6   49
46: CONECT    7    8
46: CONECT    8    9   11
46: CONECT    9   10   10   19
46: CONECT   11   12
46: CONECT   12   13   13   14
46: CONECT   13   15
46: CONECT   14   16   16
46: CONECT   15   17   17
46: CONECT   16   17
46: CONECT   17   18
46: CONECT   19   20
46: CONECT   20   21   23
46: CONECT   21   22   22   27
46: CONECT   23   24   25
46: CONECT   25   26
46: CONECT   27   28
46: CONECT   28   29   31
46: CONECT   29   30   30   36
46: CONECT   31   32
46: CONECT   32   33
46: CONECT   33   34   34   35
46: CONECT   36   37
46: CONECT   37   38   40
46: CONECT   38   39   39   44
46: CONECT   40   41
46: CONECT   41   42   42   43
46: CONECT   44   45
46: CONECT   45   46   48
46: CONECT   46   47   47   50
46: CONECT   48   49
46: CONECT   50   51   56
46: CONECT   51   52   54
46: CONECT   52   53   53   57
46: CONECT   54   55
46: CONECT   55   56
46: CONECT   57   58
46: CONECT   58   59   61
46: CONECT   59   60   60   65
46: CONECT   61   62
46: CONECT   62   63   64
46: CONECT   65   66
46: CONECT   66   67
46: CONECT   67   68   68   69
46: END
46: 
46:   Sequence: LfPVXLfPVX
46:   HELM: PEPTIDE1{L.[dF].P.V.[Orn].L.[dF].P.V.[Orn]}$PEPTIDE1,PEPTIDE1,10:R2-1:R1$$$
46:   Smiles: CC(C)C[C@@H]1NC(=O)[C@H](CCCN)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc2ccccc2)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCN)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc2ccccc2)NC1=O
46:   PDB:
46: ATOM      1  N   LEU A   1       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM      2  CA  LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      3  C   LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      4  O   LEU A   1       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM      5  CB  LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      6  CG  LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      7  CD1 LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      8  CD2 LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM    9  N   DPN A   2       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   10  CA  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   11  C   DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   12  O   DPN A   2       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   13  CB  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   14  CG  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   15  CD1 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   16  CD2 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   17  CE1 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   18  CE2 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   19  CZ  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     20  N   PRO A   3       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     21  CA  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     22  C   PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     23  O   PRO A   3       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     24  CB  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     25  CG  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     26  CD  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     27  N   VAL A   4       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     28  CA  VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     29  C   VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     30  O   VAL A   4       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     31  CB  VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     32  CG1 VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     33  CG2 VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   34  N   ORN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   35  CA  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   36  C   ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   37  O   ORN A   5       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   38  CB  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   39  CG  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   40  CD  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   41  NE  ORN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     42  N   LEU A   6       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     43  CA  LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     44  C   LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     45  O   LEU A   6       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     46  CB  LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     47  CG  LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     48  CD1 LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     49  CD2 LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   50  N   DPN A   7       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   51  CA  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   52  C   DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   53  O   DPN A   7       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   54  CB  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   55  CG  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   56  CD1 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   57  CD2 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   58  CE1 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   59  CE2 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   60  CZ  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     61  N   PRO A   8       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     62  CA  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     63  C   PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     64  O   PRO A   8       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     65  CB  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     66  CG  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     67  CD  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     68  N   VAL A   9       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     69  CA  VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     70  C   VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     71  O   VAL A   9       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     72  CB  VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     73  CG1 VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     74  CG2 VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   75  N   ORN A  10       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   76  CA  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   77  C   ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   78  O   ORN A  10       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   79  CB  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   80  CG  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   81  CD  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   82  NE  ORN A  10       0.000   0.000   0.000 -0.00  0.00           N  
46: CONECT    1    2   77
46: CONECT    2    3    5
46: CONECT    3    4    4    9
46: CONECT    5    6
46: CONECT    6    7    8
46: CONECT    9   10
46: CONECT   10   11   13
46: CONECT   11   12   12   20
46: CONECT   13   14
46: CONECT   14   15   15   16
46: CONECT   15   17
46: CONECT   16   18   18
46: CONECT   17   19   19
46: CONECT   18   19
46: CONECT   20   21   26
46: CONECT   21   22   24
46: CONECT   22   23   23   27
46: CONECT   24   25
46: CONECT   25   26
46: CONECT   27   28
46: CONECT   28   29   31
46: CONECT   29   30   30   34
46: CONECT   31   32   33
46: CONECT   34   35
46: CONECT   35   36   38
46: CONECT   36   37   37   42
46: CONECT   38   39
46: CONECT   39   40
46: CONECT   40   41
46: CONECT   42   43
46: CONECT   43   44   46
46: CONECT   44   45   45   50
46: CONECT   46   47
46: CONECT   47   48   49
46: CONECT   50   51
46: CONECT   51   52   54
46: CONECT   52   53   53   61
46: CONECT   54   55
46: CONECT   55   56   56   57
46: CONECT   56   58
46: CONECT   57   59   59
46: CONECT   58   60   60
46: CONECT   59   60
46: CONECT   61   62   67
46: CONECT   62   63   65
46: CONECT   63   64   64   68
46: CONECT   65   66
46: CONECT   66   67
46: CONECT   68   69
46: CONECT   69   70   72
46: CONECT   70   71   71   75
46: CONECT   72   73   74
46: CONECT   75   76
46: CONECT   76   77   79
46: CONECT   77   78   78
46: CONECT   79   80
46: CONECT   80   81
46: CONECT   81   82
46: END
46: 
46:   Sequence: GREG
46:   HELM: PEPTIDE1{G.R.E.G}$$$$
46:   Smiles: N=C(N)NCCCC(NC(=O)CN)C(=O)NC(CCC(=O)O)C(=O)NCC(=O)O
46:   PDB:
46: ATOM      1  N   GLY A   1       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM      2  CA  GLY A   1       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      3  C   GLY A   1       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      4  O   GLY A   1       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM      5  N   ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM      6  CA  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      7  C   ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      8  O   ARG A   2       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM      9  CB  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     10  CG  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     11  CD  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     12  NE  ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     13  CZ  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     14  NH1 ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     15  NH2 ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     16  N   GLU A   3       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     17  CA  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     18  C   GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     19  O   GLU A   3       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     20  CB  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     21  CG  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     22  CD  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     23  OD1 GLU A   3       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     24  OD2 GLU A   3       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     25  N   GLY A   4       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     26  CA  GLY A   4       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     27  C   GLY A   4       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     28  O   GLY A   4       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     29  OXT GLY A   4       0.000   0.000   0.000  1.00  0.00           O  
46: CONECT    1    2
46: CONECT    2    3
46: CONECT    3    4    4    5
46: CONECT    5    6
46: CONECT    6    7    9
46: CONECT    7    8    8   16
46: CONECT    9   10
46: CONECT   10   11
46: CONECT   11   12
46: CONECT   12   13
46: CONECT   13   14   14   15
46: CONECT   16   17
46: CONECT   17   18   20
46: CONECT   18   19   19   25
46: CONECT   20   21
46: CONECT   21   22
46: CONECT   22   23   23   24
46: CONECT   25   26
46: CONECT   26   27
46: CONECT   27   28   28   29
46: END
46: 
 46/130 Test  #46: testSequence .......................   Passed    0.05 sec
test 47
        Start  47: testSubstructMatch

47: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/testSubstructMatch
47: Test timeout computed to be: 9.99988e+06
47:  ----------------- Test 1
47: Done
47: 
47:  ----------------- Test 2
47: Done
47: 
47:  ----------------- Test 3
47: Done
47: 
47:  ----------------- Test 4
47: Done
47: 
47:  ----------------- Test 5
47: Done
47: 
47:  ----------------- Test 5 QueryRoot
47: Done
47: 
47:  ----------------- Test 6 (Issue71 related)
47: Done
47: 
47:  ----------------- Testing serial numbers on recursive queries
47: Done
47: 
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test multithreading
47: reading molecules
47:  hits: 1111110111111111111111011111100011011011111101010111011110111101111111111111111111111011111011111110
47: processing
47:  launch :0
47:  launch :1
47:  launch :2
47:  launch :3
47:  done
47:  hits2: 1111110111111111111111011111100011011011111101010111011110111101111111111111111111111011111011111110
47: processing2
47:  launch2 :0
47:  launch2 :1
47:  launch2 :2
47:  launch2 :3
47:  done
47:  preprocessing 3
47:  hits3: 1110100011001000010011100110100011011000010101000100110010101111011100101000001111110000010100100110
47: processing3
47:  launch3 :0
47:  launch3 :1
47:  launch3 :2
47:  launch3 :3
47:  done
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test GitHub issue 15
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test GitHub issue 409
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test chiral matching
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test GitHub issue 688: partially specified chiral substructure queries don't work properly
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test dative-bond matching
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test cis/trans matching
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test cis/trans matching part 2
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22]     Testing Github #1389: Substructure matching with chirality failure when query is built from SMARTS
47: [10:54:22]   done
 47/130 Test  #47: testSubstructMatch .................   Passed    0.46 sec
test 48
        Start  48: testReaction

48: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReaction
48: Test timeout computed to be: 9.99988e+06
48: [10:54:22] ********************************************************
48: [10:54:22] Testing Chemical Reactions 
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing ChemicalReaction infrastructure
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing simple reactions
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing ring formation reactions
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reactions forming multiple products
48: smi: O=C1CNC(=O)CN1
48: 1: O=C1CNC(=O)CN1
48: 2: COOC
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing salt handling
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Daylight parser
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing MDL parser
48: O=C1CNC(=O)CN1
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Reaction Validation.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 4 
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing handling of query atoms in the products
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Chirality handling
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] F[C@](Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@](Cl)(Br)I
48: [10:54:22] F[C@](Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Chirality handling (rxn)
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing handling of double bond stereochemistry
48: [10:54:22] [*]C(=O)/C=C/Cl
48: [10:54:22] C/C=C/Cl
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 1748846: bad bond orders in reaction products
48: [10:54:22] 1
48: [10:54:22] COCc1ccccc1
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 1804420: bad handling of query atoms in products.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 1882749: property handling in products.
48: [10:54:22] atom 0 in product 0 has multiple charge specifications.
48:  mass: 15.0001
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing parser exception handling
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 1920627: chirality flip in reactions.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing property transfer in reactions.
48: Oc1ccccn1
48: Oc1ccc[nH]1
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 2050085: recap failing on chiral molecules.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing bond queries in the product.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 2540021: bad handling of atoms with explicit Hs.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing using dots in the products to remove bonds.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing pickling and depickling reactions.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing preservation of atom flags from rxn files.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing transfer of conformer data from reactants->products.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing v3000 MDL parser
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reaction SMARTS writer.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reaction depictor.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing RXN file writer.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reactant and product queries.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Issue 3140490.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing string replacement in parsing.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing getReactingAtoms() 1.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing getReactingAtoms() 2
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing grouping parens in reactants1
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:1](=O)O.[C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:1](=O)O).[C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:2])'
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing grouping parens in reactants2
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing use of _protected property on atoms.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing use of adding recursive queries to a reaction.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing loss of chirality on innocent atoms.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing handling of agents in reaction smarts
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github 233: chirality not preserved in nonmapped atoms
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Daylight parser
48: [10:54:22] SMILES Parse Error: syntax error for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github 290: seg fault while parsing rxn
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reaction SMILES writer.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing handling of reaction agents.
48: [10:54:22] reactant 2 has no mapped atoms.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing the conversion of a molecule with Rxn role to a reaction and vice versa.
48: [10:54:22] >> Atoms within one molecule have different RXN roles.
48: [10:54:22] >> Fragment 0 not included in the reaction, atoms do not have a correct RXN role.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing grouping parens in products1
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:1][C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:1][C:2])'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:1]).[C:2]'
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing grouping parens in products2
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing RNX file parser with empty agent column
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing RNX from patent data
48: [10:54:22] reactant 0 has no mapped atoms.
48: [10:54:22] reactant 1 has no mapped atoms.
48: [10:54:22] reactant 3 has no mapped atoms.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 6 found multiple times.
48: [10:54:22] product atom-mapping number 7 found multiple times.
48: [10:54:22] product atom-mapping number 8 found multiple times.
48: [10:54:22] product atom-mapping number 12 found multiple times.
48: [10:54:22] product atom-mapping number 9 found multiple times.
48: [10:54:22] product atom-mapping number 10 found multiple times.
48: [10:54:22] product atom-mapping number 11 found multiple times.
48: [10:54:22] reactant 0 has no mapped atoms.
48: [10:54:22] reactant 1 has no mapped atoms.
48: [10:54:22] reactant 3 has no mapped atoms.
48: [10:54:22] reactant atom-mapping number 19 found multiple times.
48: [10:54:22] reactant atom-mapping number 25 found multiple times.
48: [10:54:22] reactant atom-mapping number 20 found multiple times.
48: [10:54:22] reactant atom-mapping number 21 found multiple times.
48: [10:54:22] reactant atom-mapping number 22 found multiple times.
48: [10:54:22] reactant atom-mapping number 23 found multiple times.
48: [10:54:22] reactant atom-mapping number 24 found multiple times.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing products redundant atom mapping numbers in run_reactants
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reaction substructure matching w/o agents
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing products with redundant atom mapping numbers and chirality
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: F[C@@](Cl)(Br)ONO[C@@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: F[C@@](Cl)(Br)ONO[C@@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: F[C@@](Cl)(Br)O[C@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: F[C@@](Cl)(Br)O[C@@](F)(Cl)Br
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing products with redundant atom mapping numbers and chirality
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 4 
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 4 
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing old pickle file with new agent version
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing introduction of new atoms with chirality
48: [10:54:22] product atom-mapping number 6 not found in reactants.
48: [10:54:22] product atom-mapping number 7 not found in reactants.
48: [10:54:22] product atom-mapping number 8 not found in reactants.
48: [10:54:22] F[C@](Cl)(I)N[C@H](Cl)Br
48: [10:54:22] [C@@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][Br:6]>>[C@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][CH2:7][C@@H:8]([CH3:9])[Cl:10]
48: [10:54:22] product atom-mapping number 7 not found in reactants.
48: [10:54:22] product atom-mapping number 8 not found in reactants.
48: [10:54:22] product atom-mapping number 9 not found in reactants.
48: [10:54:22] product atom-mapping number 10 not found in reactants.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 6 
48: [10:54:22] C[C@H](F)CCC[C@@H](C)Cl
48: [10:54:22] [C@@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][Br:6]>>[C@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][CH2:7][C@@H:8]([CH3:9])[Cl:10]
48: [10:54:22] product atom-mapping number 7 not found in reactants.
48: [10:54:22] product atom-mapping number 8 not found in reactants.
48: [10:54:22] product atom-mapping number 9 not found in reactants.
48: [10:54:22] product atom-mapping number 10 not found in reactants.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 6 
48: [10:54:22] C[C@H](F)CCC[C@@H](C)Cl
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing round trip molFileValue
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing canonicatization of reactions
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github685: SMARTS reaction triggers invariant violation on chiral compounds
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github975: Unnecessary warnings in rxn.validate()
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing copy constructor
48: smi1 [CH3:1][CH2:2][C:3]([OH:4])([NH2:5])[Cl:6]>>[CH3:1][C:3]([CH3:2])([OH:4])[NH2:5].[ClH:6]
48: smi2 [CH3:1][CH2:2][C:3]([OH:4])([NH2:5])[Cl:6]>>[CH3:1][C:3]([CH3:2])([OH:4])[NH2:5].[ClH:6]
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github 243: dummy labels copied into products
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github 1266: Reactions don't modify isotope unless chemical element is specified for the product
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests sanitize reaction (unmapped Hs) 
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests sanitize reaction (mapped hs in react but not prod) 
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 7 8 9 10 11 12 13 14 15 16 
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests sanitize reaction (mapped hs in react and prod) 
48: [10:54:22] product atom-mapping number 17 not found in reactants.
48: [10:54:22] product atom-mapping number 18 not found in reactants.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 12 
48: [10:54:22] Done
48: [10:54:22] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
48: [10:54:22] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
48: 
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests github1387: Bond from reactant not added to product
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests github1544: ChemicalReaction code not calling setNoImplicit() when H counts are set
48: [10:54:22] Done
48: [10:54:22] *******************************************************
 48/130 Test  #48: testReaction .......................   Passed    0.21 sec
test 49
        Start  49: testReactionFingerprints

49: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReactionFingerprints
49: Test timeout computed to be: 9.99988e+06
49: [10:54:22] ********************************************************
49: [10:54:22] Testing Chemical Reaction Fingerprints 
49: [10:54:22] -------------------------------------
49: [10:54:22]     Test Reaction StructuralFingerprint
49: [10:54:22] -------------------------------------
49: [10:54:22]     Test Reaction DifferenceFingerprint
49: [10:54:22] *******************************************************
 49/130 Test  #49: testReactionFingerprints ...........   Passed    0.03 sec
test 50
        Start  50: testEnumeration

50: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testEnumeration
50: Test timeout computed to be: 9.99988e+06
50: 30000000000 30000000000
50: 0,0 0
50: 0,1 0
50: 1,0 0
50: 1,1 0
50: 2,0 0
50: 2,1 0
50: [10:55:12] Removed 1 non matching reagents at template 0
50: [10:55:12] Removed 1 non matching reagents at template 1
50: [10:55:12] Removed 1 non matching reagents at template 2
50: [10:55:12] -------------------------------------
50: [10:55:12] Testing github #1657: EnumerateLibrary with initFromString called twice doesn't clear the reaction
50: [10:55:13] 	done
 50/130 Test  #50: testEnumeration ....................   Passed   50.19 sec
test 51
        Start  51: pyChemReactions

51: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py"
51: Test timeout computed to be: 9.99988e+06
51: .......[10:55:13] mapped atoms in the reactants were not mapped in the products.
51:   unmapped numbers are: 3 
51: [10:55:13] mapped atoms in the reactants were not mapped in the products.
51:   unmapped numbers are: 3 
51: .[10:55:13] mapped atoms in the reactants were not mapped in the products.
51:   unmapped numbers are: 3 
51: ..[10:55:13] reactant 2 has no mapped atoms.
51: [10:55:13] reactant 2 has no mapped atoms.
51: [10:55:13] product 1 has no mapped atoms.
51: ********************************************
51: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testData/AmideBond.rxn
51: <rdkit.Chem.rdChemReactions.ChemicalReaction object at 0x1279a60>
51: ........[10:55:13] SMARTS Parse Error: syntax error for input: '[C:1](=[O:2])Q'
51: [10:55:13] SMARTS Parse Error: syntax error for input: '[C:1](=[O:2])[N:3]Q'
51: .[10:55:13] reactant atom-mapping number 1 found multiple times.
51: [10:55:13] product atom-mapping number 2 not found in reactants.
51: [10:55:13] mapped atoms in the reactants were not mapped in the products.
51:   unmapped numbers are: 4 
51: [10:55:13] product atom-mapping number 5 not found in reactants.
51: ......[10:55:13] reaction has no reactants
51: [10:55:13] reaction has no products
51: [10:55:13] initialization failed
51: [10:55:13] reaction has no reactants
51: [10:55:13] reaction has no products
51: .[10:55:13] reaction has no reactants
51: [10:55:13] reaction has no products
51: [10:55:13] initialization failed
51: [10:55:13] reaction has no reactants
51: [10:55:13] reaction has no products
51: .
51: ----------------------------------------------------------------------
51: Ran 27 tests in 0.052s
51: 
51: OK
 51/130 Test  #51: pyChemReactions ....................   Passed    0.55 sec
test 52
        Start  52: pyChemReactionEnumerations

52: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/testEnumerations.py"
52: Test timeout computed to be: 9.99988e+06
52: [10:55:13] == testCartesianProduct
52: True
52: .[10:55:13] == testEnumerateLibrary
52: == CartesianProductStrategy CartesianProductStrategy
52: ..[10:55:13] == testRGroupState
52: .[10:55:13] == testRandomEnumerateAllBBsLibrary
52: ** [1, 1]
52: ** [0, 2]
52: ** [1, 0]
52: .[10:55:13] == testRandomEnumerateLibrary
52: .[10:55:13] == testRandomSample
52: 197 out of 300
52: 0 6 out of 10
52: 1 3 out of 5
52: 2 4 out of 6
52: .[10:55:13] == testRandomSampleAllBBs
52: 198 out of 300
52: 0 10 out of 10
52: 1 5 out of 5
52: 2 6 out of 6
52: .[10:55:13]  deprecated -- please use MatchOnlyAtRgroupsAdjustParams instead
52: [10:55:13] Removed 1 non matching reagents at template 0
52: [10:55:13] Removed 1 non matching reagents at template 2
52: [10:55:13] Removed 1 non matching reagents at template 0
52: [10:55:13] Removed 1 non matching reagents at template 1
52: [10:55:13] Removed 1 non matching reagents at template 2
52: [10:55:13]  deprecated -- please use MatchOnlyAtRgroupsAdjustParams instead
52: [10:55:13] Removed 1 non matching reagents at template 0
52: [10:55:13] Removed 1 non matching reagents at template 1
52: [10:55:13] Removed 1 non matching reagents at template 2
52: .[10:55:13] == testRemoveBadMatches
52: [10:55:13] Removed 3 non matching reagents at template 0
52: [10:55:13] Removed 4 non matching reagents at template 1
52: .[10:55:13] == testTimings
52: .
52: ----------------------------------------------------------------------
52: Ran 11 tests in 0.990s
52: 
52: OK
52: <rdkit.Chem.rdChemReactions.CartesianProductStrategy object at 0x1310f18> Skipped 10000000 in 0.0417819023132 seconds
52: <rdkit.Chem.rdChemReactions.RandomSampleStrategy object at 0x1310ec0> Skipped 10000000 in 0.413046121597 seconds
52: <rdkit.Chem.rdChemReactions.RandomSampleAllBBsStrategy object at 0x1310db8> Skipped 10000000 in 0.322587966919 seconds
 52/130 Test  #52: pyChemReactionEnumerations .........   Passed    1.12 sec
test 53
        Start  53: pyChemReactionSanitize

53: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/testSanitize.py"
53: Test timeout computed to be: 9.99988e+06
53: ********************************************
53: $RXN
53: 
53:       RDKit
53: 
53:   2  1
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    2 [*:1]
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   1  2  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: V    1 [*:2]
53: V    2 boronicacid
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: V    1 [*:1]
53: V    2 [*:2]
53: M  END
53: 
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: $RXN
53: 
53:       RDKit
53: 
53:   2  1
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    2 [*:1]
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   1  2  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: V    1 [*:2]
53: V    2 boronicacid
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: V    1 [*:1]
53: V    2 [*:2]
53: M  END
53: 
53: ********************************************
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: 
53:       RDKit
53: 
53:   2  1
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    2 *
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   1  2  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: V    1 *
53: V    2 boronicacid
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: V    1 *
53: V    2 *
53: M  END
53: 
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: 
53:       RDKit
53: 
53:   2  1
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    2 [*:1]
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   1  2  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: V    1 [*:2]
53: V    2 boronicacid
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: V    1 [*:1]
53: V    2 [*:2]
53: M  END
53: 
53: ********************************************
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: 
53:       RDKit
53: 
53:   2  1
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53: V    1 halogen.bromine.aromatic
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   1  2  1  0
53:   2  4  1  0
53: V    2 boronicacid
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    11.9811   -6.9292    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53: M  END
53: 
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: 
53:       RDKit
53: 
53:   2  1
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    2 [*:1]
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   1  2  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: V    1 [*:2]
53: V    2 boronicacid
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: V    1 [*:1]
53: V    2 [*:2]
53: M  END
53: 
53: ********************************************
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: 
53:       RDKit
53: 
53:   2  1
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53: V    1 halogen.bromine.aromatic
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   1  2  1  0
53:   2  4  1  0
53: V    2 boronicacid
53: M  END
53: $MOL
53: 
53:      RDKit          2D
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    11.9811   -6.9292    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53: M  END
53: 
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: ..
53: ----------------------------------------------------------------------
53: Ran 2 tests in 0.015s
53: 
53: OK
53: $RXN Failed
 53/130 Test  #53: pyChemReactionSanitize .............   Passed    0.16 sec
test 54
        Start  54: testChemTransforms

54: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/testChemTransforms
54: Test timeout computed to be: 9.99988e+06
54: [10:55:14] ********************************************************
54: [10:55:14] Testing Chemical Transforms 
54: [10:55:14] -------------------------------------
54: [10:55:14] Testing deleteSubstruct
54: 1 smi: CC
54: 1 smi: CC
54: 2 smi: CCO[C@H](N)P
54: 2 smi: CC
54: [10:55:14] 	done
54: [10:55:14] -------------------------------------
54: [10:55:14] Testing replaceSubstruct
54: replaceSub smi1:CCP(CC)[C@@H](N)O
54: replaceSub smi1:CCNCC
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] More testing of replaceSubstruct
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceSidechains
54: sidechains chiral=true smi1;;; [1*]P([2*])[C@H](N)O
54: sidechains chiral=false smi1;;; [1*]P([2*])[C@H](N)O
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceCore
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceCore with labels
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing a former crash in replaceCore
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing that atom positions are correctly copied by replaceCore
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceCore with a matchvect
54: [10:55:15] -- caught error[10:55:15] -- caught error[10:55:15] -- caught error[10:55:15] -- caught error[10:55:15] -------------------------------------
54: [10:55:15] Testing murcko decomposition
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceCore requiring dummy atoms
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing that atom positions are correctly copied by replaceSubstructs
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing handling of substituted non-carbon aromatic atoms
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing combination of molecules
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing adding recursive queries to a molecule
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing parsing query definition file
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing sf.net issue 275: Murcko decomposition with chiral atoms
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing fragmentOnBonds
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing fragmentOnBRICSBonds
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing fragmentOnSomeBonds
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing github issue 429: fragmentOnSomeBonds() should update implicit H count on aromatic heteroatoms when addDummies is False
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing github issue 430: fragmentOnSomeBonds() crashes if bond list is empty
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing github issue 511: FragmentOnBonds() producing incorrect chirality
54: CC[C@@](C)(N)OC
54: [10:55:15] 	done
54: [10:55:15] *******************************************************
 54/130 Test  #54: testChemTransforms .................   Passed    0.21 sec
test 55
        Start  55: testSubgraphs1

55: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/testSubgraphs1
55: Test timeout computed to be: 9.99988e+06
55: -----------------------
55:  Subgraph retrieval
55: Finished
55: -----------------------
55:  testSubgraphs2a
55: Finished
55: -----------------------
55:  testSubgraphs2
55: Finished
55: -----------------------
55:  Path retrieval
55: Finished
55: -----------------------
55:  Path retrieval2
55: Finished
55: -----------------------
55:  Unique Subgraph retrieval
55: Finished
55: -----------------------
55:  testUniqueSubgraphs2
55: Finished
55: -----------------------
55:  testRootedSubgraphs
55: Finished
55: -----------------------
55:  testRootedPaths
55: Finished
 55/130 Test  #55: testSubgraphs1 .....................   Passed    0.28 sec
test 56
        Start  56: testSubgraphs2

56: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/testSubgraphs2
56: Test timeout computed to be: 9.99988e+06
56: -----------------------
56:  Test1: pathToSubmol
56: Finished
56: -----------------------
56:  Test2: Atom Environments
56: Finished
56: -----------------------
56:  Testing github Issue103: stereochemistry and pathToSubmol
56: Finished
 56/130 Test  #56: testSubgraphs2 .....................   Passed    0.02 sec
test 57
        Start  57: filterCatalogTest

57: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/filterCatalogTest
57: Test timeout computed to be: 9.99988e+06
57: [10:55:15] -----------------------
57:  Testing the filter catalog 
57: Warning: molecule failed filter 
57: Warning: molecule failed filter: reason hzone_phenol_A(479)
57: v = { 
57: 	0,23},
57: 	1,22},
57: 	2,20},
57: 	3,19},
57: 	4,25},
57: 	5,24},
57: 	6,18},
57: 	7,17},
57: 	8,16},
57: 	9,21},
57: }
57: match = { 
57: 	0,23},
57: 	1,22},
57: 	2,20},
57: 	3,19},
57: 	4,25},
57: 	5,24},
57: 	6,18},
57: 	7,17},
57: 	8,16},
57: 	9,21},
57: }
57: Warning: molecule failed filter 
57: Warning: molecule failed filter: reason cyano_imine_B(17)
57: v = { 
57: 	0,11},
57: 	1,12},
57: 	2,13},
57: 	3,14},
57: 	4,15},
57: 	5,10},
57: 	6,9},
57: 	7,8},
57: 	8,7},
57: 	9,6},
57: 	10,5},
57: 	11,17},
57: 	12,16},
57: }
57: match = { 
57: 	0,11},
57: 	1,12},
57: 	2,13},
57: 	3,14},
57: 	4,15},
57: 	5,10},
57: 	6,9},
57: 	7,8},
57: 	8,7},
57: 	9,6},
57: 	10,5},
57: 	11,17},
57: 	12,16},
57: }
57: Warning: molecule failed filter 
57: Warning: molecule failed filter: reason keto_keto_gamma(5)
57: v = { 
57: 	0,0},
57: 	1,1},
57: 	2,2},
57: 	3,4},
57: 	4,5},
57: 	5,6},
57: 	6,7},
57: 	7,8},
57: 	8,9},
57: 	9,14},
57: 	10,15},
57: 	11,16},
57: }
57: match = { 
57: 	0,0},
57: 	1,1},
57: 	2,2},
57: 	3,4},
57: 	4,5},
57: 	5,6},
57: 	6,7},
57: 	7,8},
57: 	8,9},
57: 	9,14},
57: 	10,15},
57: 	11,16},
57: }
57: [10:55:15] Finished
 57/130 Test  #57: filterCatalogTest ..................   Passed    0.12 sec
test 58
        Start  58: pyFilterCatalog

58: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/rough_test.py"
58: Test timeout computed to be: 9.99988e+06
58: [10:55:16] FilterMatcherBase::Clone is deprecated, use copy instead
58: (Five aromatic carbons And (Not any of Five aromatic carbons))
58: (Five aromatic carbons Or (Not any of Five aromatic carbons))
58: (Not (Five aromatic carbons And (Not any of Five aromatic carbons)))
58: ********************************************
58: Testing: PAINS_A 2
58: ********************************************
58: Testing: PAINS_B 4
58: ********************************************
58: Testing: PAINS_C 8
58: ********************************************
58: Testing: PAINS 14
58: .....[10:55:17] FilterMatcherBase::Clone is deprecated, use copy instead
58: ....[10:55:17] FilterMatcherBase::Clone is deprecated, use copy instead
58: (Not FilterMatcher)
58: .[10:55:17] FilterMatcherBase::Clone is deprecated, use copy instead
58: ........
58: ----------------------------------------------------------------------
58: Ran 18 tests in 0.733s
58: 
58: OK
58: Bar
58: Count 1
58: ********************************************
58: set(['Cl,Br,I'])
 58/130 Test  #58: pyFilterCatalog ....................   Passed    1.65 sec
test 59
        Start  59: testFragCatalog

59: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/testFragCatalog
59: Test timeout computed to be: 9.99988e+06
59:  21
59: [10:55:17] ----- Test 1
59: [10:55:17] ---- Done
59: [10:55:17] ----- Test 2
59: [10:55:17] ---- Done
59: [10:55:17] ----- Test 3
59: [10:55:17] ---- Done
59: [10:55:17] ----- Test Issue 115
59: [10:55:17] ---- Done
59: [10:55:17] ----- Test Issue 117
59: [10:55:17] ---- Done
59: [10:55:17] ---- Test Issue294
59:   Watch memory usage.
59: [10:55:17] ---- Done
 59/130 Test  #59: testFragCatalog ....................   Passed    0.57 sec
test 60
        Start  60: pyFragCatalog

60: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/rough_test.py"
60: Test timeout computed to be: 9.99988e+06
60: .........
60: ----------------------------------------------------------------------
60: Ran 9 tests in 0.056s
60: 
60: OK
 60/130 Test  #60: pyFragCatalog ......................   Passed    0.20 sec
test 61
        Start  61: testDescriptors

61: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testDescriptors
61: Test timeout computed to be: 9.99988e+06
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Crippen parameter acquisition.
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Crippen calculation.
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Issue262: problems with Crippen calculation from pickles.
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test AMW calculation.
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Exact MW calculation.
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Labute ASA descriptors.
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test TPSA descriptors.
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test Lipinski parameters.
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test VSA descriptors.
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test molecular formula calculation.
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test Issue 3415534.
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test Issue3433771: Bad definition for Crippen atom type O11.
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test multithreading
61: reading molecules
61: processing
61:  launch :0
61:  launch :1
61:  launch :2
61:  launch :3
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Issue252: Bad definitions for Crippen atom types.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of ChiVs.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of ChiNs.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of HallKierAlpha.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of Kappa1.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of Kappa2.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of Kappa3.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Crippen atom type calculations.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test ring descriptors
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test other count descriptors.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test MQN
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test GitHub Issue 56.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Github92: Bad Crippen atom type for pyrrole H.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Github362: order dependence  in Kier-Hall descriptors.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of spiro and bridgehead counts.
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Github694: ExactMolWt ignoring the mass of the electron
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Testing Properties and KitchenSink
61: [10:55:22] ---Caught keyerror (bad property name)---
61: [10:55:22] ---Caught stereo value error---
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test USR Descriptor
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Github #1702: AUTOCORR2D.h not installed unless RDK_BUILD_DESCRIPTORS3D but is required
61: [10:55:22]   done
 61/130 Test  #61: testDescriptors ....................   Passed    4.97 sec
test 62
        Start  62: testAUTOCORR2D

62: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D
62: Test timeout computed to be: 9.99988e+06
62: [10:55:22] ----------------------------
62: start test autocorr2D
62: [10:55:23]   done
 62/130 Test  #62: testAUTOCORR2D .....................   Passed    0.42 sec
test 63
        Start  63: testPBF

63: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF
63: Test timeout computed to be: 9.99988e+06
63: [10:55:23] -------------------------------------
63: [10:55:23]     Basic PBF tests.
63: [10:55:23]   done
63: [10:55:23] -------------------------------------
63: [10:55:23]     PBF edge cases.
63: [10:55:23]   done
 63/130 Test  #63: testPBF ............................   Passed    0.18 sec
test 64
        Start  64: testRDF

64: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF
64: Test timeout computed to be: 9.99988e+06
64: =>start test rdf
64: [10:55:24] test on : 365 molecules done
 64/130 Test  #64: testRDF ............................   Passed    0.48 sec
test 65
        Start  65: testMORSE

65: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE
65: Test timeout computed to be: 9.99988e+06
65: =>start test MORSE
65: =>read file
65: [10:55:24] test on : 365 molecules done
 65/130 Test  #65: testMORSE ..........................   Passed    0.75 sec
test 66
        Start  66: test3D

66: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/test3D
66: Test timeout computed to be: 9.99988e+06
66: [10:55:24] -------------------------------------
66: [10:55:24]     Basic PMI tests.
66: [10:55:24]   done
66: [10:55:24] -------------------------------------
66: [10:55:24]     More PMI/NPR tests.
66: [10:55:24]   done
66: [10:55:24] -------------------------------------
66: [10:55:24]     Basic NPR tests.
66: [10:55:25]   done
66: [10:55:25] -------------------------------------
66: [10:55:25]     PMI edge cases.
66: [10:55:25]   done
66: [10:55:25] -------------------------------------
66: [10:55:25]     NPR edge cases.
66: [10:55:25]   done
66: [10:55:25] -------------------------------------
66: [10:55:25]     3D descriptors.
66: [10:55:25]   done
66: [10:55:25] -------------------------------------
66: [10:55:25]     3D descriptor edge cases.
66: [10:55:25]   done
 66/130 Test  #66: test3D .............................   Passed    0.40 sec
test 67
        Start  67: testWHIM

67: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM
67: Test timeout computed to be: 9.99988e+06
67: =>start test WHIM
67: [10:55:25] test on : 365 molecules done
 67/130 Test  #67: testWHIM ...........................   Passed    0.32 sec
test 68
        Start  68: testGETAWAY

68: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY
68: Test timeout computed to be: 9.99988e+06
68: =>start test GETAWAY
68: [10:55:26] test on : 365 molecules done
 68/130 Test  #68: testGETAWAY ........................   Passed    1.19 sec
test 69
        Start  69: testAUTOCORR3D

69: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D
69: Test timeout computed to be: 9.99988e+06
69: =>start test autocorr3D
69: [10:55:26] test on : 365 molecules done
 69/130 Test  #69: testAUTOCORR3D .....................   Passed    0.30 sec
test 70
        Start  70: pyMolDescriptors

70: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py"
70: Test timeout computed to be: 9.99988e+06
70: .......................
70: ----------------------------------------------------------------------
70: exactmw 78.046950192
70: lipinskiHBA 0.0
70: lipinskiHBD 0.0
70: NumRotatableBonds 0.0
70: NumHBD 0.0
70: NumHBA 0.0
70: NumHeteroatoms 0.0
70: NumAmideBonds 0.0
70: FractionCSP3 0.0
70: NumRings 1.0
70: NumAromaticRings 1.0
70: NumAliphaticRings 0.0
70: NumSaturatedRings 0.0
70: NumHeterocycles 0.0
70: NumAromaticHeterocycles 0.0
70: NumSaturatedHeterocycles 0.0
70: NumAliphaticHeterocycles 0.0
70: NumSpiroAtoms 0.0
70: NumBridgeheadAtoms 0.0
70: NumAtomStereoCenters 0.0
70: NumUnspecifiedAtomStereoCenters 0.0
70: labuteASA 37.4314031195
70: tpsa 0.0
70: CrippenClogP 1.6866
70: CrippenMR 26.442
70: NumAtoms 6.0
70: exactmw 78.046950192
70: lipinskiHBA 0.0
70: Ran 23 tests in 0.026s
70: 
70: OK
 70/130 Test  #70: pyMolDescriptors ...................   Passed    0.47 sec
test 71
        Start  71: pyMolDescriptors3D

71: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/test3D.py"
71: Test timeout computed to be: 9.99988e+06
71: ......
71: ----------------------------------------------------------------------
71: Ran 6 tests in 0.071s
71: 
71: OK
 71/130 Test  #71: pyMolDescriptors3D .................   Passed    0.21 sec
test 72
        Start  72: testFingerprints

72: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/testFingerprints
72: Test timeout computed to be: 9.99988e+06
72: [10:55:27] testing basics
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: Atoms:
72: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: [10:55:27] done
72: [10:55:27] testing subgraph invariants
72: [10:55:27] --------------------  fp1 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] done
72: [10:55:27] testing auto folding
72: [10:55:27] done
72: [10:55:27] testing basics alg2
72: [10:55:27] done
72: [10:55:27] testing subgraph invariants alg2
72: [10:55:27] --------------------  fp1 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] done
72: [10:55:27] testing similarity trends
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->1 order: 12 conj?: 1 aromatic?: 1
72: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: SMI: Oc1cc2[nH]cnc2c(O)n1
72: Atoms:
72: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->1 order: 12 conj?: 1 aromatic?: 1
72: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: c1(O)cc2[nH]cnc2c(O)n1
72: Atoms:
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 0->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: c1c(O)nc(O)c2c1[nH]cn2
72: Atoms:
72: 	0 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	3 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 1 conj?: 1 aromatic?: 0
72: 	2 1->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 1 conj?: 1 aromatic?: 0
72: 	5 4->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->6 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: c12cc(O)nc(O)c1nc[nH]2
72: Atoms:
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 1 conj?: 1 aromatic?: 0
72: 	3 2->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->0 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: [nH]1c2cc(O)nc(O)c2nc1
72: Atoms:
72: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 1 conj?: 1 aromatic?: 0
72: 	4 3->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 1 conj?: 1 aromatic?: 0
72: 	7 6->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 8->1 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: c1[nH]c2cc(O)nc(O)c2n1
72: Atoms:
72: 	0 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	1 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 1 conj?: 1 aromatic?: 0
72: 	5 4->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 1 conj?: 1 aromatic?: 0
72: 	8 7->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 9->2 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: n1c[nH]c2cc(O)nc(O)c21
72: Atoms:
72: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	2 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	10 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->3 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: c12c(cc(O)nc1O)[nH]cn2
72: Atoms:
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 1 conj?: 1 aromatic?: 0
72: 	4 3->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 1 conj?: 1 aromatic?: 0
72: 	7 1->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 6->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->0 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: c1(O)c2c(cc(O)n1)[nH]cn2
72: Atoms:
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: [10:55:27] done
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 0->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 3->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->2 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: Oc1c2c(cc(O)n1)[nH]cn2
72: Atoms:
72: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: [10:55:27] testing basics layered fps
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 3->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->1 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->2 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: SMI: n1c(O)cc2[nH]cnc2c1O
72: Atoms:
72: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	3 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 1 conj?: 1 aromatic?: 0
72: 	2 1->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 1 conj?: 1 aromatic?: 0
72: 	10 9->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 8->4 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: 
72: [10:55:27] done
72: [10:55:27] testing advanced layered fps
72: [10:55:27] done
72: [10:55:27] testing layered fps and queries
72: [10:55:27] done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Morgan Fingerprints.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Morgan Fingerprints using fromAtoms argument.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Morgan Fingerprints as bit vects.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Morgan Fingerprints with feature invariants.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test additional Morgan fingerprints options.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Atom Codes.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Atom Pairs.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Atom Pairs part 2.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Topological Torsions.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Bulk Topological Torsions.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Hashed Atom Pairs.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Hashed torsions.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Rooted Atom Pairs.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test ignoring atoms in Atom Pairs.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Rooted Topological Torsions.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test ignoring atoms in Topological Torsions.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test atom info from morgan fingerprints.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] testing RDKit fingerprint options
72: [10:55:27] done
72: [10:55:27] testing atom pair and torsions options
72: [10:55:27] -------------------------------------
72: [10:55:27] done
72: [10:55:27] testing MACCS key calculation
72: [10:55:27] -------------------------------------
72: [10:55:27] done
72: [10:55:27] testing RDKit fingerprints rooted at particular atoms
72: [10:55:27] -------------------------------------
72: [10:55:27] done
72: [10:55:27] testing RDKit fingerprints reporting atomBits
72: [10:55:27] -------------------------------------
72: [10:55:27] done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Atom Pairs including info about chirality.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Topological Torsions including info about chirality.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test GitHub Issue 25: fingerprint backwards compatibility.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test GitHub Issue 151: PatternFingerprint problems
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test 3D atom pairs.
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test GitHub Issue 195: GenMACCSKeys() raises an exception with an empty molecule
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test multithreading with the pattern FP
72: reading molecules
72: pass 1
72:  launch :0
72:  launch :1
72:  launch :2
72:  launch :3
72: pass 2
72:  launch :0
72:  launch :1
72:  launch :2
72:  launch :3
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test GitHub Issue 258: Bad pattern fingerprint for query molecule
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP.
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test GitHub Issue 695: Include cis/trans stereochemistry when useChirality=true with the morgan fingerprints
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test GitHub Issue 811: rooted atom fingerprint non identical for the same molecules #811
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test unfolded version of RDKFP   
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test bitinfo of RDKFP   
72: [10:55:36] -------------------------------------
72: [10:55:36]     Single atoms setting radius 1 bits in Morgan fingerprints  
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36] Github #879: Pattern fingerprint should set bits for single-atom fragments.
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36] Github #1496: Pattern fingerprint setting bad bits for degree zero atoms
72: [10:55:36]   done
 72/130 Test  #72: testFingerprints ...................   Passed    8.90 sec
test 73
        Start  73: testPartialCharges

73: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/testPartialCharges
73: Test timeout computed to be: 9.99988e+06
73: [10:55:36] -------------------------------------
73: [10:55:36]     Test GitHub issue 485: Gasteiger charge calculation fails with hexavalent sulfur
73: [10:55:36]   done
 73/130 Test  #73: testPartialCharges .................   Passed    0.02 sec
test 74
        Start  74: pyPartialCharges

74: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py"
74: Test timeout computed to be: 9.99988e+06
74: ......
74: ----------------------------------------------------------------------
74: Ran 6 tests in 0.205s
74: 
74: OK
 74/130 Test  #74: pyPartialCharges ...................   Passed    0.35 sec
test 75
        Start  75: testMolTransforms

75: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/testMolTransforms
75: Test timeout computed to be: 9.99988e+06
75: ***********************************************************
75: Testing MolTransforms
75: 	---------------------------------
75: 	 test1Canonicalization 
75: 
75: 	---------------------------------
75: 	 testGetSetBondLength 
75: 
75: 	---------------------------------
75: 	 testGetSetAngle 
75: 
75: 	---------------------------------
75: 	 testGetSetDihedral 
75: 
75: 	---------------------------------
75: 	 testGithub1262: PMI descriptors incorrect  
75: 
75: ***********************************************************
 75/130 Test  #75: testMolTransforms ..................   Passed    0.02 sec
test 76
        Start  76: pyMolTransforms

76: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py"
76: Test timeout computed to be: 9.99988e+06
76: ....
76: ----------------------------------------------------------------------
76: Ran 4 tests in 0.013s
76: 
76: OK
 76/130 Test  #76: pyMolTransforms ....................   Passed    0.12 sec
test 77
        Start  77: testMMFFForceFieldHelpers

77: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpers
77: Test timeout computed to be: 9.99988e+06
77: [10:55:37] -------------------------------------
77: [10:55:37]     Test MMFF atom types.
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing MMFF builder tools.
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing MMFF builder+minimization.
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing Issue239.
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing Issue242.
77: [10:55:37] E1: 169.67
77: [10:55:37] E2: 162.526
77: [10:55:37] E1: 99.6001
77: [10:55:37] E2: 99.6001
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing github 308: crash during MMFF parameterization .
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing SFIssue1653802.
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing SFIssue2378119.
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing bulk MMFF (regression to check that things run).
77: [10:55:37] Mol:1
77: [10:55:37] Mol:2
77: [10:55:37] Mol:3
77: [10:55:37] Mol:4
77: [10:55:37] Mol:5
77: [10:55:37] Mol:6
77: [10:55:37] Mol:7
77: [10:55:37] Mol:8
77: [10:55:37] Mol:9
77: [10:55:37] Mol:10
77: [10:55:37] Mol:11
77: [10:55:37] Mol:12
77: [10:55:37] Mol:13
77: [10:55:37] Mol:14
77: [10:55:37] Mol:15
77: [10:55:37] Mol:16
77: [10:55:37] Mol:17
77: [10:55:37] Mol:18
77: [10:55:37] Mol:19
77: [10:55:37] Mol:20
77: [10:55:37] Mol:21
77: [10:55:37] Mol:22
77: [10:55:37] Mol:23
77: [10:55:37] Mol:24
77: [10:55:37] Mol:25
77: [10:55:37] Mol:26
77: [10:55:37] Mol:27
77: [10:55:37] Mol:28
77: [10:55:37] Mol:29
77: [10:55:37] Mol:30
77: [10:55:37] Mol:31
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37]     Test MMFF force-field parameter getters.
77: [10:55:37] -------------------------------------
77: [10:55:37]     Test MMFF multithreading
77: generating reference data
77: processing
77:  launch :0
77:  launch :1
77:  launch :2
77: [10:55:37] Rep: 0 Mol:0
77:  launch :3
77: [10:55:37] Rep: 0 Mol:1
77: [10:55:37] Rep: 0 Mol:2
77: [10:55:37] Rep: 0 Mol:3
77: [10:55:37] Rep: 0 Mol:5
77: [10:55:37] Rep: 0 Mol:9
77: [10:55:37] Rep: 0 Mol:4
77: [10:55:37] Rep: 0 Mol:13
77: [10:55:37] Rep: 0 Mol:17
77: [10:55:37] Rep: 0 Mol:6
77: [10:55:37] Rep: 0 Mol:8
77: [10:55:37] Rep: 0 Mol:10
77: [10:55:37] Rep: 0 Mol:12
77: [10:55:37] Rep: 0 Mol:16
77: [[10:55:37] Rep: 0 Mol:7
77: [10:55:37] Rep: 0 Mol:11
77: [10:55:37] Rep: 0 Mol:15
77: [10:55:37] Rep: 0 Mol:19
77: [10:55:37] Rep: 0 Mol:20
77: 10:55:37] Rep: 0 Mol:21
77: [10:55:37] Rep: 0 Mol:14
77: [10:55:37] Rep: 0 Mol:23
77: [10:55:37] Rep: 0 Mol:27
77: [10:55:37] Rep: 0 Mol:25
77: [10:55:37] Rep: 0 Mol:18
77: [10:55:37] Rep: 0 Mol:24
77: [10:55:37] Rep: 0 Mol:31
77: [10:55:37] Rep: 0 Mol:22
77: [10:55:37] Rep: 0 Mol:29
77: [10:55:37] Rep: 0 Mol:28
77: [10:55:37] Rep: 0 Mol:26
77: [10:55:37] Rep: 0 Mol:30
77: [10:55:38] Rep: 100 Mol:3
77: [10:55:38] Rep: 100 Mol:7
77: [10:55:38] Rep: 100 Mol:11
77: [10:55:38] Rep: 100 Mol:15
77: [10:55:38] Rep: 100 Mol:19
77: [10:55:38] Rep: 100 Mol:23
77: [10:55:38] Rep: 100 Mol:27
77: [10:55:38] Rep: 100 Mol:31
77: [10:55:39] Rep: 100 Mol:0
77: [10:55:39] Rep: 100 Mol:4
77: [10:55:39] Rep: 100 Mol:8
77: [10:55:39] Rep: 100 Mol:12
77: [10:55:39] Rep: 100 Mol:16
77: [10:55:39] Rep: 100 Mol:20
77: [10:55:39] Rep: 100 Mol:24
77: [10:55:39] Rep: 100 Mol:28
77: [10:55:39] Rep: 100 Mol:1
77: [10:55:39] Rep: 100 Mol:5
77: [10:55:39] Rep: 100 Mol:9
77: [10:55:39] Rep: 100 Mol:13
77: [10:55:39] Rep: 100 Mol:17
77: [10:55:39] Rep: 100 Mol:21
77: [10:55:39] Rep: 100 Mol:25
77: [10:55:39] Rep: 100 Mol:29
77: [10:55:39] Rep: 100 Mol:2
77: [10:55:39] Rep: 100 Mol:6
77: [10:55:39] Rep: 100 Mol:10
77: [10:55:39] Rep: 100 Mol:14
77: [10:55:39] Rep: 100 Mol:18
77: [10:55:39] Rep: 100 Mol:22
77: [10:55:39] Rep: 100 Mol:26
77: [10:55:39] Rep: 100 Mol:30
77: [10:55:39] Rep: 200 Mol:3
77: [10:55:39] Rep: 200 Mol:7
77: [10:55:39] Rep: 200 Mol:11
77: [10:55:39] Rep: 200 Mol:15
77: [10:55:39] Rep: 200 Mol:19
77: [10:55:39] Rep: 200 Mol:23
77: [10:55:39] Rep: 200 Mol:27
77: [10:55:39] Rep: 200 Mol:31
77: [10:55:40] Rep: 200 Mol:0
77: [10:55:40] Rep: 200 Mol:4
77: [10:55:40] Rep: 200 Mol:8
77: [10:55:40] Rep: 200 Mol:12
77: [10:55:40] Rep: 200 Mol:16
77: [10:55:40] Rep: 200 Mol:20
77: [10:55:40] Rep: 200 Mol:24
77: [10:55:40] Rep: 200 Mol:28
77: [10:55:40] Rep: 200 Mol:1
77: [10:55:40] Rep: 200 Mol:5
77: [10:55:40] Rep: 200 Mol:9
77: [10:55:40] Rep: 200 Mol:13
77: [10:55:40] Rep: 200 Mol:17
77: [10:55:40] Rep: 200 Mol:21
77: [10:55:40] Rep: 200 Mol:25
77: [10:55:40] Rep: 200 Mol:29
77: [10:55:40] Rep: 300 Mol:3
77: [10:55:40] Rep: 300 Mol:7
77: [10:55:40] Rep: 300 Mol:11
77: [10:55:40] Rep: 300 Mol:15
77: [10:55:40] Rep: 300 Mol:19
77: [10:55:40] Rep: 300 Mol:23
77: [10:55:40] Rep: 300 Mol:27
77: [10:55:40] Rep: 300 Mol:31
77: [10:55:40] Rep: 200 Mol:2
77: [10:55:40] Rep: 200 Mol:6
77: [10:55:40] Rep: 200 Mol:10
77: [10:55:40] Rep: 200 Mol:14
77: [10:55:40] Rep: 200 Mol:18
77: [10:55:40] Rep: 200 Mol:22
77: [10:55:40] Rep: 200 Mol:26
77: [10:55:40] Rep: 200 Mol:30
77: [10:55:41] Rep: 300 Mol:0
77: [10:55:41] Rep: 300 Mol:4
77: [10:55:41] Rep: 300 Mol:8
77: [10:55:41] Rep: 300 Mol:12
77: [10:55:41] Rep: 300 Mol:16
77: [10:55:41] Rep: 300 Mol:20
77: [10:55:41] Rep: 300 Mol:24
77: [10:55:41] Rep: 300 Mol:28
77: [10:55:41] Rep: 300 Mol:1
77: [10:55:41] Rep: 300 Mol:5
77: [10:55:41] Rep: 300 Mol:9
77: [10:55:41] Rep: 300 Mol:13
77: [10:55:41] Rep: 300 Mol:17
77: [10:55:41] Rep: 300 Mol:21
77: [10:55:41] Rep: 300 Mol:25
77: [10:55:41] Rep: 300 Mol:29
77: [10:55:41] Rep: 400 Mol:3
77: [10:55:41] Rep: 400 Mol:7
77: [10:55:41] Rep: 400 Mol:11
77: [10:55:41] Rep: 400 Mol:15
77: [10:55:41] Rep: 400 Mol:19
77: [10:55:41] Rep: 400 Mol:23
77: [10:55:41] Rep: 400 Mol:27
77: [10:55:41] Rep: 400 Mol:31
77: [10:55:42] Rep: 300 Mol:2
77: [10:55:42] Rep: 300 Mol:6
77: [10:55:42] Rep: 300 Mol:10
77: [10:55:42] Rep: 300 Mol:14
77: [10:55:42] Rep: 300 Mol:18
77: [10:55:42] Rep: 300 Mol:22
77: [10:55:42] Rep: 300 Mol:26
77: [10:55:42] Rep: 300 Mol:30
77: [10:55:42] Rep: 400 Mol:0
77: [10:55:42] Rep: 400 Mol:4
77: [10:55:42] Rep: 400 Mol:8
77: [10:55:42] Rep: 400 Mol:12
77: [10:55:42] Rep: 400 Mol:16
77: [10:55:42] Rep: 400 Mol:20
77: [10:55:42] Rep: 400 Mol:24
77: [10:55:42] Rep: 400 Mol:28
77: [10:55:42] Rep: 400 Mol:1
77: [10:55:42] Rep: 400 Mol:5
77: [10:55:42] Rep: 400 Mol:9
77: [10:55:42] Rep: 400 Mol:13
77: [10:55:42] Rep: 400 Mol:17
77: [10:55:42] Rep: 400 Mol:21
77: [10:55:42] Rep: 400 Mol:25
77: [10:55:42] Rep: 400 Mol:29
77: [10:55:43] Rep: 400 Mol:2
77: [10:55:43] Rep: 400 Mol:6
77: [10:55:43] Rep: 400 Mol:10
77: [10:55:43] Rep: 400 Mol:14
77: [10:55:43] Rep: 400 Mol:18
77: [10:55:43] Rep: 400 Mol:22
77: [10:55:43] Rep: 400 Mol:26
77: [10:55:43] Rep: 400 Mol:30
77: [10:55:44]   done
77: [10:55:44] -------------------------------------
77: [10:55:44]     Test MMFF multithreading2
77: [10:55:50]   done
77: [10:55:50] -------------------------------------
77: [10:55:50]     Testing github 162: Incorrect SMILES after MMFF parameterization .
77: [10:55:50]   done
77: [10:55:50] -------------------------------------
77: [10:55:50]     Testing github 224: crash during MMFF parameterization .
77: [10:55:50]   done
 77/130 Test  #77: testMMFFForceFieldHelpers ..........   Passed   13.17 sec
test 78
        Start  78: testUFFForceFieldHelpers

78: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFForceFieldHelpers
78: Test timeout computed to be: 9.99988e+06
78: [10:55:50] -------------------------------------
78: [10:55:50]     Test UFF atom labels.
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 5
78: [10:55:50]   done
78: [10:55:50] -------------------------------------
78: [10:55:50]     Test UFF atom typer.
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 1
78: [10:55:50]   done
78: [10:55:50] -------------------------------------
78: [10:55:50]     Testing UFF builder tools.
78: [10:55:50]   done
78: [10:55:50] -------------------------------------
78: [10:55:50]     Testing UFF builder+minimization.
78: [10:55:50]   done
78: [10:55:50] -------------------------------------
78: [10:55:50]     Testing bulk UFF (regression to check that things run).
78: [10:55:50] Mol:1
78: [10:55:50] Mol:2
78: [10:55:50] Mol:3
78: [10:55:50] Mol:4
78: [10:55:50] Mol:5
78: [10:55:50] Mol:6
78: [10:55:50] Mol:7
78: [10:55:50] Mol:8
78: [10:55:50] Mol:9
78: [10:55:50] Mol:10
78: [10:55:50] Mol:11
78: [10:55:50] Mol:12
78: [10:55:50] Mol:13
78: [10:55:50] Mol:14
78: [10:55:50] Mol:15
78: [10:55:50] Mol:16
78: [10:55:50] Mol:17
78: [10:55:50] Mol:18
78: [10:55:50] Mol:19
78: [10:55:50] Mol:20
78: [10:55:50] Mol:21
78: [10:55:50] Mol:22
78: [10:55:50] Mol:23
78: [10:55:51] Mol:24
78: [10:55:51] Mol:25
78: [10:55:51] Mol:26
78: [10:55:51] Mol:27
78: [10:55:51] Mol:28
78: [10:55:51] Mol:29
78: [10:55:51] Mol:30
78: [10:55:51] Mol:31
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing UFF special cases.
78: [10:55:51] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:51] UFFTYPER: Unrecognized charge state for atom: 0
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing Issue239.
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing SFIssue1653802.
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing SFIssue2378119.
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51]     Test UFF force-field parameter getters.
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing handling missing parameters.
78: [10:55:51] UFFTYPER: Unrecognized hybridization for atom: 0
78: [10:55:51] UFFTYPER: Unrecognized atom type: Cu (0)
78: [10:55:51] UFFTYPER: Unrecognized hybridization for atom: 0
78: [10:55:51] UFFTYPER: Unrecognized atom type: Cu (0)
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing SFIssue3009337.
78: [10:55:51] UFFTYPER: Warning: hybridization set to SP3 for atom 2
78: [10:55:51] UFFTYPER: Warning: hybridization set to SP3 for atom 2
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51]     Test UFF multithreading
78: generating reference data
78: processing
78:  launch :0
78:  launch :1
78:  launch :2
78: [10:55:51] Rep: 0 Mol:0[[10:55:51] Rep: 0 Mol:1
78: 
78:  launch :3
78: [10:55:51] Rep: 0 Mol:5
78: [10:55:51] Rep: 0 Mol:9
78: [10:55:51] Rep: 0 Mol:13
78: 10:55:51] Rep: 0 Mol:2
78: [10:55:51] Rep: 0 Mol:3
78: [10:55:51] Rep: 0 Mol:4
78: [10:55:51] Rep: 0 Mol:17
78: [10:55:51] Rep: 0 Mol:6
78: [10:55:51] Rep: 0 Mol:7
78: [10:55:51] Rep: 0 Mol:11
78: [10:55:51] Rep: 0 Mol:15
78: [10:55:51] Rep: 0 Mol:19
78: [10:55:51] Rep: 0 Mol:21
78: [10:55:51] Rep: 0 Mol:10
78: [10:55:51] Rep: 0 Mol:8
78: [[10:55:51] Rep: 0 Mol:23
78: [10:55:51] Rep: 0 Mol:27
78: [10:55:51] Rep: 0 Mol:31
78: [10:55:51] Rep: 0 Mol:25
78: 10:55:51] Rep: 0 Mol:12
78: [10:55:51] Rep: 0 Mol:16
78: [10:55:51] Rep: 0 Mol:14
78: [10:55:51] Rep: 0 Mol:20
78: [10:55:51] Rep: 0 Mol:18
78: [10:55:51] Rep: 0 Mol:22
78: [10:55:51] Rep: 0 Mol:29
78: [10:55:51] Rep: 0 Mol:24
78: [10:55:51] Rep: 0 Mol:26
78: [10:55:51] Rep: 0 Mol:28
78: [10:55:51] Rep: 0 Mol:30
78: [10:55:52] Rep: 100 Mol:3
78: [10:55:52] Rep: 100 Mol:7
78: [10:55:52] Rep: 100 Mol:11
78: [10:55:52] Rep: 100 Mol:15
78: [10:55:52] Rep: 100 Mol:19
78: [10:55:52] Rep: 100 Mol:23
78: [10:55:52] Rep: 100 Mol:27
78: [10:55:52] Rep: 100 Mol:31
78: [10:55:52] Rep: 100 Mol:1
78: [10:55:52] Rep: 100 Mol:5
78: [10:55:52] Rep: 100 Mol:9
78: [10:55:52] Rep: 100 Mol:13
78: [10:55:52] Rep: 100 Mol:17
78: [10:55:52] Rep: 100 Mol:21
78: [10:55:52] Rep: 100 Mol:25
78: [10:55:52] Rep: 100 Mol:29
78: [10:55:52] Rep: 100 Mol:0
78: [10:55:52] Rep: 100 Mol:4
78: [10:55:52] Rep: 100 Mol:8
78: [10:55:52] Rep: 100 Mol:12
78: [10:55:52] Rep: 100 Mol:16
78: [10:55:52] Rep: 100 Mol:20
78: [10:55:52] Rep: 100 Mol:24
78: [10:55:52] Rep: 100 Mol:28
78: [10:55:52] Rep: 100 Mol:2
78: [10:55:52] Rep: 100 Mol:6
78: [10:55:52] Rep: 100 Mol:10
78: [10:55:52] Rep: 100 Mol:14
78: [10:55:52] Rep: 100 Mol:18
78: [10:55:52] Rep: 100 Mol:22
78: [10:55:52] Rep: 100 Mol:26
78: [10:55:52] Rep: 100 Mol:30
78: [10:55:52] Rep: 200 Mol:3
78: [10:55:52] Rep: 200 Mol:7
78: [10:55:52] Rep: 200 Mol:11
78: [10:55:52] Rep: 200 Mol:15
78: [10:55:52] Rep: 200 Mol:19
78: [10:55:52] Rep: 200 Mol:23
78: [10:55:52] Rep: 200 Mol:27
78: [10:55:52] Rep: 200 Mol:31
78: [10:55:52] Rep: 200 Mol:0
78: [10:55:52] Rep: 200 Mol:4
78: [10:55:52] Rep: 200 Mol:8
78: [10:55:52] Rep: 200 Mol:12
78: [10:55:52] Rep: 200 Mol:16
78: [10:55:52] Rep: 200 Mol:20
78: [10:55:52] Rep: 200 Mol:24
78: [10:55:52] Rep: 200 Mol:28
78: [10:55:52] Rep: 200 Mol:1
78: [10:55:52] Rep: 200 Mol:5
78: [10:55:52] Rep: 200 Mol:9
78: [10:55:52] Rep: 200 Mol:13
78: [10:55:52] Rep: 200 Mol:17
78: [10:55:52] Rep: 200 Mol:21
78: [10:55:52] Rep: 200 Mol:25
78: [10:55:52] Rep: 200 Mol:29
78: [10:55:53] Rep: 300 Mol:3
78: [10:55:53] Rep: 300 Mol:7
78: [10:55:53] Rep: 300 Mol:11
78: [10:55:53] Rep: 300 Mol:15
78: [10:55:53] Rep: 300 Mol:19
78: [10:55:53] Rep: 300 Mol:23
78: [10:55:53] Rep: 300 Mol:27
78: [10:55:53] Rep: 300 Mol:31
78: [10:55:53] Rep: 200 Mol:2
78: [10:55:53] Rep: 200 Mol:6
78: [10:55:53] Rep: 200 Mol:10
78: [10:55:53] Rep: 200 Mol:14
78: [10:55:53] Rep: 200 Mol:18
78: [10:55:53] Rep: 200 Mol:22
78: [10:55:53] Rep: 200 Mol:26
78: [10:55:53] Rep: 200 Mol:30
78: [10:55:53] Rep: 300 Mol:0
78: [10:55:53] Rep: 300 Mol:4
78: [10:55:53] Rep: 300 Mol:8
78: [10:55:53] Rep: 300 Mol:12
78: [10:55:53] Rep: 300 Mol:16
78: [10:55:53] Rep: 300 Mol:20
78: [10:55:53] Rep: 300 Mol:24
78: [10:55:53] Rep: 300 Mol:28
78: [10:55:53] Rep: 300 Mol:1
78: [10:55:53] Rep: 300 Mol:5
78: [10:55:53] Rep: 300 Mol:9
78: [10:55:53] Rep: 300 Mol:13
78: [10:55:53] Rep: 300 Mol:17
78: [10:55:53] Rep: 300 Mol:21
78: [10:55:53] Rep: 300 Mol:25
78: [10:55:53] Rep: 300 Mol:29
78: [10:55:53] Rep: 400 Mol:3
78: [10:55:53] Rep: 400 Mol:7
78: [10:55:53] Rep: 400 Mol:11
78: [10:55:53] Rep: 400 Mol:15
78: [10:55:53] Rep: 400 Mol:19
78: [10:55:53] Rep: 400 Mol:23
78: [10:55:53] Rep: 400 Mol:27
78: [10:55:53] Rep: 400 Mol:31
78: [10:55:53] Rep: 300 Mol:2
78: [10:55:53] Rep: 300 Mol:6
78: [10:55:53] Rep: 300 Mol:10
78: [10:55:53] Rep: 300 Mol:14
78: [10:55:53] Rep: 300 Mol:18
78: [10:55:53] Rep: 300 Mol:22
78: [10:55:53] Rep: 300 Mol:26
78: [10:55:53] Rep: 300 Mol:30
78: [10:55:53] Rep: 500 Mol:3
78: [10:55:53] Rep: 500 Mol:7
78: [10:55:53] Rep: 400 Mol:0
78: [10:55:53] Rep: 400 Mol:4
78: [10:55:53] Rep: 400 Mol:8
78: [[10:55:53] Rep: 500 Mol:11
78: [10:55:53] Rep: 500 Mol:15
78: [10:55:53] Rep: 500 Mol:19
78: [10:55:53] Rep: 500 Mol:23
78: [10:55:53] Rep: 500 Mol:27
78: [10:55:53] Rep: 500 Mol:31
78: [10:55:53] Rep: 400 Mol:12
78: [10:55:53] Rep: 400 Mol:16
78: [10:55:53] Rep: 400 Mol:20
78: [10:55:53] Rep: 400 Mol:24
78: [10:55:53] Rep: 400 Mol:28
78: 10:55:53] Rep: 400 Mol:1
78: [10:55:53] Rep: 400 Mol:5
78: [10:55:54] Rep: 400 Mol:9
78: [10:55:54] Rep: 400 Mol:13
78: [10:55:54] Rep: 400 Mol:17
78: [10:55:54] Rep: 400 Mol:21
78: [10:55:54] Rep: 400 Mol:25
78: [10:55:54] Rep: 400 Mol:29
78: [10:55:54] Rep: 600 Mol:3
78: [10:55:54] Rep: 600 Mol:7
78: [10:55:54] Rep: 600 Mol:11
78: [10:55:54] Rep: 600 Mol:15
78: [10:55:54] Rep: 600 Mol:19
78: [10:55:54] Rep: 600 Mol:23
78: [10:55:54] Rep: 600 Mol:27
78: [10:55:54] Rep: 600 Mol:31
78: [10:55:54] Rep: 500 Mol:1
78: [10:55:54] Rep: 500 Mol:5
78: [10:55:54] Rep: 500 Mol:9
78: [10:55:54] Rep: 500 Mol:13
78: [10:55:54] Rep: 500 Mol:17
78: [10:55:54] Rep: 500 Mol:21
78: [10:55:54] Rep: 500 Mol:25
78: [10:55:54] Rep: 500 Mol:29
78: [10:55:54] Rep: 500 Mol:0
78: [10:55:54] Rep: 500 Mol:4
78: [10:55:54] Rep: 500 Mol:8
78: [10:55:54] Rep: 500 Mol:12
78: [10:55:54] Rep: 500 Mol:16
78: [10:55:54] Rep: 500 Mol:20
78: [10:55:54] Rep: 500 Mol:24
78: [10:55:54] Rep: 500 Mol:28
78: [10:55:54] Rep: 400 Mol:2
78: [10:55:54] Rep: 400 Mol:6
78: [10:55:54] Rep: 400 Mol:10
78: [10:55:54] Rep: 400 Mol:14
78: [10:55:54] Rep: 400 Mol:18
78: [10:55:54] Rep: 400 Mol:22
78: [10:55:54] Rep: 400 Mol:26
78: [10:55:54] Rep: 400 Mol:30
78: [10:55:54] Rep: 700 Mol:3
78: [10:55:54] Rep: 700 Mol:7
78: [10:55:54] Rep: 700 Mol:11
78: [10:55:54] Rep: 700 Mol:15
78: [10:55:54] Rep: 700 Mol:19
78: [10:55:54] Rep: 700 Mol:23
78: [10:55:54] Rep: 700 Mol:27
78: [10:55:54] Rep: 700 Mol:31
78: [10:55:55] Rep: 600 Mol:1
78: [10:55:55] Rep: 600 Mol:5
78: [10:55:55] Rep: 600 Mol:9
78: [10:55:55] Rep: 600 Mol:13
78: [10:55:55] Rep: 600 Mol:17
78: [10:55:55] Rep: 600 Mol:21
78: [10:55:55] Rep: 600 Mol:25
78: [10:55:55] Rep: 600 Mol:29
78: [10:55:55] Rep: 600 Mol:0
78: [10:55:55] Rep: 600 Mol:4
78: [10:55:55] Rep: 600 Mol:8
78: [10:55:55] Rep: 600 Mol:12
78: [10:55:55] Rep: 600 Mol:16
78: [10:55:55] Rep: 600 Mol:20
78: [10:55:55] Rep: 600 Mol:24
78: [10:55:55] Rep: 600 Mol:28
78: [10:55:55] Rep: 500 Mol:2
78: [10:55:55] Rep: 500 Mol:6
78: [10:55:55] Rep: 500 Mol:10
78: [10:55:55] Rep: 500 Mol:14
78: [10:55:55] Rep: 500 Mol:18
78: [10:55:55] Rep: 500 Mol:22
78: [10:55:55] Rep: 500 Mol:26
78: [10:55:55] Rep: 500 Mol:30
78: [10:55:55] Rep: 800 Mol:3
78: [10:55:55] Rep: 800 Mol:7
78: [10:55:55] Rep: 800 Mol:11
78: [10:55:55] Rep: 800 Mol:15
78: [10:55:55] Rep: 800 Mol:19
78: [10:55:55] Rep: 800 Mol:23
78: [10:55:55] Rep: 800 Mol:27
78: [10:55:55] Rep: 800 Mol:31
78: [10:55:55] Rep: 700 Mol:1
78: [10:55:55] Rep: 700 Mol:5
78: [10:55:55] Rep: 700 Mol:9
78: [10:55:55] Rep: 700 Mol:13
78: [10:55:55] Rep: 700 Mol:17
78: [10:55:55] Rep: 700 Mol:21
78: [10:55:55] Rep: 700 Mol:25
78: [10:55:55] Rep: 700 Mol:29
78: [10:55:55] Rep: 700 Mol:0
78: [10:55:55] Rep: 700 Mol:4
78: [10:55:55] Rep: 700 Mol:8
78: [10:55:55] Rep: 700 Mol:12
78: [10:55:55] Rep: 700 Mol:16
78: [10:55:55] Rep: 700 Mol:20
78: [10:55:55] Rep: 700 Mol:24
78: [10:55:55] Rep: 700 Mol:28
78: [10:55:55] Rep: 900 Mol:3
78: [10:55:55] Rep: 900 Mol:7
78: [10:55:55] Rep: 900 Mol:11
78: [10:55:55] Rep: 900 Mol:15
78: [10:55:55] Rep: 900 Mol:19
78: [10:55:55] Rep: 900 Mol:23
78: [10:55:55] Rep: 900 Mol:27
78: [10:55:55] Rep: 900 Mol:31
78: [10:55:56] Rep: 600 Mol:2
78: [10:55:56] Rep: 600 Mol:6
78: [10:55:56] Rep: 600 Mol:10
78: [10:55:56] Rep: 600 Mol:14
78: [10:55:56] Rep: 600 Mol:18
78: [10:55:56] Rep: 600 Mol:22
78: [10:55:56] Rep: 600 Mol:26
78: [10:55:56] Rep: 600 Mol:30
78: [10:55:56] Rep: 800 Mol:1
78: [10:55:56] Rep: 800 Mol:5
78: [10:55:56] Rep: 800 Mol:9
78: [10:55:56] Rep: 800 Mol:13
78: [10:55:56] Rep: 800 Mol:17
78: [10:55:56] Rep: 800 Mol:21
78: [10:55:56] Rep: 800 Mol:25
78: [10:55:56] Rep: 800 Mol:29
78: [10:55:56] Rep: 800 Mol:0
78: [10:55:56] Rep: 800 Mol:4
78: [10:55:56] Rep: 800 Mol:8
78: [10:55:56] Rep: 800 Mol:12
78: [10:55:56] Rep: 800 Mol:16
78: [10:55:56] Rep: 800 Mol:20
78: [10:55:56] Rep: 800 Mol:24
78: [10:55:56] Rep: 800 Mol:28
78: [10:55:56] Rep: 900 Mol:1
78: [10:55:56] Rep: 900 Mol:5
78: [10:55:56] Rep: 900 Mol:9
78: [10:55:56] Rep: 900 Mol:13
78: [10:55:56] Rep: 900 Mol:17
78: [10:55:56] Rep: 900 Mol:21
78: [10:55:56] Rep: 900 Mol:25
78: [10:55:56] Rep: 900 Mol:29
78: [10:55:56] Rep: 700 Mol:2
78: [10:55:56] Rep: 700 Mol:6
78: [10:55:56] Rep: 700 Mol:10
78: [10:55:56] Rep: 700 Mol:14
78: [10:55:56] Rep: 700 Mol:18
78: [10:55:56] Rep: 700 Mol:22
78: [10:55:56] Rep: 700 Mol:26
78: [10:55:56] Rep: 700 Mol:30
78: [10:55:57] Rep: 900 Mol:0
78: [10:55:57] Rep: 900 Mol:4
78: [10:55:57] Rep: 900 Mol:8
78: [10:55:57] Rep: 900 Mol:12
78: [10:55:57] Rep: 900 Mol:16
78: [10:55:57] Rep: 900 Mol:20
78: [10:55:57] Rep: 900 Mol:24
78: [10:55:57] Rep: 900 Mol:28
78: [10:55:57] Rep: 800 Mol:2
78: [10:55:57] Rep: 800 Mol:6
78: [10:55:57] Rep: 800 Mol:10
78: [10:55:57] Rep: 800 Mol:14
78: [10:55:57] Rep: 800 Mol:18
78: [10:55:57] Rep: 800 Mol:22
78: [10:55:57] Rep: 800 Mol:26
78: [10:55:57] Rep: 800 Mol:30
78: [10:55:57] Rep: 900 Mol:2
78: [10:55:57] Rep: 900 Mol:6
78: [10:55:57] Rep: 900 Mol:10
78: [10:55:57] Rep: 900 Mol:14
78: [10:55:57] Rep: 900 Mol:18
78: [10:55:57] Rep: 900 Mol:22
78: [10:55:57] Rep: 900 Mol:26
78: [10:55:57] Rep: 900 Mol:30
78: [10:55:57]   done
78: [10:55:57] -------------------------------------
78: [10:55:57]     Test UFF multithreading2
78: [10:56:04]   done
78: [10:56:04] -------------------------------------
78: [10:56:04]     Testing GitHubIssue62.
78: [10:56:04] beta-lactam 38.6865
78: [10:56:04] cyclopropanone 174.698
78: [10:56:04] aziridine 337.986
78: [10:56:04] aziridinone 115.248
78: [10:56:04] isobutene 2.48217
78: [10:56:04] acetone 1.91788
78: [10:56:04] cyclopentanone 10.1648
78: [10:56:04] cyclopropene 98.4685
78: [10:56:04] cyclobutene 39.0782
78: [10:56:04] cyclopropane 267.236
78: [10:56:04] gamma-lactam 15.7471
78: [10:56:04] trans-2,3-diphenylcyclopropan-1-one 202.121
78: [10:56:04] cis-2,3-diphenylcyclopropan-1-one 205.539
78: [10:56:04] 2,3-diphenylcyclopropa-2-en-1-one 20.0443
78: [10:56:04] cyclopropylidencyclobutane 218.986
78: [10:56:04] diphenylmethylidencyclobutane 79.6273
78: [10:56:04]   done
78: [10:56:04] -------------------------------------
78: [10:56:04]     Test Github Issue 613: UFF Atom type not properly assigned to lanthanides.
78: [10:56:04]   done
 78/130 Test  #78: testUFFForceFieldHelpers ...........   Passed   14.54 sec
test 79
        Start  79: testCrystalForceField

79: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalForceField
79: Test timeout computed to be: 9.99988e+06
79: -------------------------------------
79:  Test CrystalFF torsional term.
 79/130 Test  #79: testCrystalForceField ..............   Passed    0.03 sec
test 80
        Start  80: pyForceFieldHelpers

80: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py"
80: Test timeout computed to be: 9.99988e+06
80: .....[10:56:04] UFFTYPER: Unrecognized hybridization for atom: 0
80: [10:56:04] UFFTYPER: Unrecognized atom type: Cu (0)
80: ......
80: ----------------------------------------------------------------------
80: Ran 11 tests in 0.024s
80: 
80: OK
 80/130 Test  #80: pyForceFieldHelpers ................   Passed    0.17 sec
test 81
        Start  81: testDistGeomHelpers

81: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/testDistGeomHelpers
81: Test timeout computed to be: 9.99988e+06
81: [10:56:05] ********************************************************
81: [10:56:05] Testing DistGeomHelpers
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test2 
81: 
81: go
81: -------------------------------------
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test3 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test4 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test5 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test6 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test15Dists 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test Issue 215 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testMultipleConfs 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testMultipleConfsExpTors 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue227 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue236 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testOrdering 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue244 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue251 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] ERROR: Cannot convert     to int on line 95
81: [10:56:05] ERROR: moving to the begining of the next molecule
81: [10:56:05] 	 testIssue276 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue284 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue285 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue355 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testRandomCoords 
81: 
81: [10:56:05] ERROR: CTAB version string invalid at line 306
81: [10:56:05] ERROR: moving to the begining of the next molecule
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 1989539 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 2091864 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test constrained embedding 
81: 
81: [10:56:05] ssd: 0.051827
81: [10:56:05] ssd: 0.0583638
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 2091974 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 2835784 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 3019283 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 3238580 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 3483968 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test github issue 55 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test1 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test multi-threading 
81: 
81: building molecules
81: generating reference data
81: validating reference data
81: processing
81:  launch :0
81:  launch :1
81:  launch :2
81:  launch :3
81: [10:56:14]   done
81: [10:56:14] 	---------------------------------
81: [10:56:14] 	 test github issue 256: handling of zero-atom molecules
81: 
81: [10:56:14] 	---------------------------------
81: [10:56:14] 	 test multi-threaded multi-conf embedding 
81: 
81: [10:56:15] 	---------------------------------
81: [10:56:15] 	 test github issue 563: Incorrect ring stereochemistry after embedding
81: 
81: CNC[C@H]1CC[C@H](C[NH3+])CC1
81: [10:56:15] 	---------------------------------
81: [10:56:15] 	 test github issue 568: Incorrect stereochemistry after embedding
81: 
81: C1=NC[C@]2(CN3CC[C@@H]2C3)O1
81: O=C(O)[C@@H]1[C@H]2CC[C@H](O2)[C@@H]1C(=O)O
81: O=C(CCc1ccccc1)OC[C@H]1C[C@@H]2O[C@H]1[C@H]1C(=O)OC(=O)[C@@H]21
81: Cn1cc(C2=NC[C@]3(CN4CC[C@@H]3C4)O2)c2ccccc21
81: Nc1ncnc2c1ncn2[C@@H]1C=C(CO)[C@@H](O)[C@H]1O
81: CO[C@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
81: CO[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
81: CCS[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
81: CCCCC[C@H](O)/C=C/[C@]1(F)[C@@H](C/C=C\CCCC(=O)OC)[C@@H](O)C[C@H]1O
81: CCCCC[C@@H](O)/C=C/[C@]1(F)[C@@H](O)C[C@@H](O)[C@H]1C/C=C\CCCC(=O)OC
81: CNC(=O)Oc1cccc2c1OC[C@@H]1CCN(C)[C@H]21
81: CNC(=O)Oc1ccc2c(c1)[C@@H]1[C@@H](CCN1C)CO2
81: CN1CC[C@H]2COc3c(O)cccc3[C@H]21
81: CC(=O)C[C@@]12CCC[C@H]1[C@@H]1CCC3=CC(=O)CC[C@@H]3[C@H]1CC2
81: O=C(O)[C@@H]1C[C@H]2C[C@@H](CCc3nn[nH]n3)CC[C@H]2CN1
81: COc1ccc2c(c1)OC[C@@H](N1CCC(O)(c3ccc(F)cc3)CC1)[C@H]2O
81: Oc1ccc2c(c1)OC[C@@H](N1CCC(Cc3ccccc3)CC1)[C@H]2O
81: Oc1ccc2c(c1)OC[C@H](N1CCC(O)(c3ccccc3)CC1)[C@@H]2O
81: CC(=O)c1ccc2c(c1)[C@@]13CCCC[C@H]1[C@@H](C2)N(CC1CC1)CC3
81: CC(=O)O[C@@H]1CC[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C1)OCO5
81: COc1cc2c(cc1OC)[C@@H]1C[C@@H]3C[C@H](O)CC[C@@H]3CN1CC2
81: N#C[C@@H]1C[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C[C@@H]1O)OCO5
81: COC(=O)[C@@H]1C[C@](C)(C(=O)O)NC(=O)N1
81: CC(=O)OC1=C(Sc2ccccc2)C[C@H]2Cc3cc4cccc(O)c4c(O)c3C(=O)[C@H]2C1
81: Nc1ncnc2c1ncn2[C@H]1C[C@H](O)[C@@H](CO)C1
81: C[C@H](C(N)=O)N1CC[C@@]23CCCC[C@@H]2[C@@H]1Cc1ccc(OCc2cccc(F)c2)cc13
81: CN1C(=O)CC[C@@]2(C)C1=CCc1cc(Cl)ccc12
81: Cc1nc(COc2ccc3c(c2)[C@@H](O)[C@@H](Cc2cccnc2)CO3)ccc1[N+](=O)[O-]
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 test github issue 696: Bad 1-4 bounds matrix elements in highly constrained system
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 More ChEMBL molecules failing bounds smoothing.
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 ugly conformations can be generated for highly constrained ring systems.
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 test embed parameters structure.
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 test github 1227: Hs being used in RMSD filtering.
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 Failure to embed larger aromatic rings.
81: [10:56:48] 	---------------------------------
81: [10:56:48] 	 Deterministic with large random seeds
81: [10:56:51] *******************************************************
 81/130 Test  #81: testDistGeomHelpers ................   Passed   46.78 sec
test 82
        Start  82: pyDistGeom

82: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py"
82: Test timeout computed to be: 9.99988e+06
82: ...........
82: ----------------------------------------------------------------------
82: Ran 11 tests in 11.698s
82: 
82: OK
 82/130 Test  #82: pyDistGeom .........................   Passed   11.92 sec
test 83
        Start  83: testMolAlign

83: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/testMolAlign
83: Test timeout computed to be: 9.99988e+06
83: ***********************************************************
83: Testing MolAlign
83: 	---------------------------------
83: 	 test1MolAlign 
83: 
83: 	---------------------------------
83: 	 test1GetBestRMS 
83: 
83: 	---------------------------------
83: 	 test1MolWithQueryAlign 
83: 
83: 	---------------------------------
83: 	 test2AtomMap 
83: 
83: 	---------------------------------
83: 	 test3Weights 
83: 
83: 	---------------------------------
83: 	 testIssue241 
83: 
83: 	---------------------------------
83: 	 testMMFFO3A 
83: 
83: 	---------------------------------
83: 	 testMMFFO3A with pre-computed dmat and MolHistogram
83: 
83: 	---------------------------------
83: 	 testMMFFO3A with constraints
83: 
83: 	---------------------------------
83: 	 testMMFFO3A with variable weight constraints followed by local-only optimization
83: 
83: 	---------------------------------
83: 	 testCrippenO3A 
83: 
83: 	---------------------------------
83: 	 testCrippenO3A with pre-computed dmat and MolHistogram
83: 
83: 	---------------------------------
83: 	 testCrippenO3A with constraints
83: 
83: 	---------------------------------
83: generating reference data
83: 	 testCrippenO3A with variable weight constraints followed by local-only optimization
83: 
83: 	---------------------------------
83: 	 testMMFFO3A multithreading
83: 
83: processing
83:  launch :0
83:  launch :1
83:  launch :2
83:  launch :3
83: [10:57:07] Rep: 0 Mol:2
83: [10:57:07] Rep: 0 Mol:0
83: [10:57:07] Rep: 0 Mol:1
83: [10:57:07] Rep: 0 Mol:3
83: [[10:57:07] Rep: 0 Mol:7
83: [10:57:07] Rep: 0 Mol:5
83: 10:57:07] Rep: 0 Mol:4
83: [10:57:07] Rep: 0 Mol:6
83: [10:57:07] Rep: 0 Mol:9
83: [10:57:07] Rep: 0 Mol:8
83: [10:57:07] Rep: 0 Mol:11
83: [10:57:07] Rep: 0 Mol:10
83: [10:57:07] Rep: 0 Mol:13
83: [10:57:07] Rep: 0 Mol:15
83: [10:57:07] Rep: 0 Mol:14
83: [10:57:07] Rep: 0 Mol:12
83: [10:57:07] Rep: 0 Mol:17
83: [10:57:07] Rep: 0 Mol:16
83: [10:57:07] Rep: 0 Mol:18
83: [10:57:07] Rep: 0 Mol:19
83: [10:57:07] Rep: 0 Mol:22
83: [10:57:07] Rep: 0 Mol:23
83: [10:57:07] Rep: 0 Mol:21
83: [10:57:07] Rep: 0 Mol:20
83: [10:57:07] Rep: 0 Mol:26
83: [10:57:07] Rep: 0 Mol:27
83: [10:57:07] Rep: 0 Mol:25
83: [10:57:07] Rep: 0 Mol:24
83: [10:57:07] Rep: 0 Mol:30
83: [10:57:07] Rep: 0 Mol:31
83: [10:57:07] Rep: 0 Mol:29
83: [10:57:07] Rep: 0 Mol:28
83: [10:57:07] Rep: 0 Mol:35
83: [10:57:07] Rep: 0 Mol:34
83: [10:57:07] Rep: 0 Mol:33
83: [10:57:07] Rep: 0 Mol:32
83: [10:57:07] Rep: 0 Mol:39
83: [10:57:07] Rep: 0 Mol:38
83: [10:57:07] Rep: 0 Mol:36
83: [10:57:07] Rep: 0 Mol:37
83: [10:57:07] Rep: 0 Mol:40
83: [10:57:07] Rep: 0 Mol:43
83: [10:57:07] Rep: 0 Mol:47
83: [10:57:07] Rep: 0 Mol:42
83: [10:57:07] Rep: 0 Mol:41
83: [10:57:[10:57:07] Rep: 0 Mol:44
83: 07] Rep: 0 Mol:51
83: [10:57:07] Rep: 0 Mol:48
83: [10:57:07] Rep: 0 Mol:46
83: [10:57:07] Rep: 0 Mol:45
83: [10:57:07] Rep: 0 Mol:55
83: [10:57:07] Rep: 0 Mol:52
83: [10:57:07] Rep: 0 Mol:49
83: [10:57:07] Rep: 0 Mol:50
83: [10:57:07] Rep: 0 Mol:53
83: [10:57:07] Rep: 0 Mol:54
83: [10:57:11] Rep: 10 Mol:1
83: [10:57:11] Rep: 10 Mol:5
83: [10:57:11] Rep: 10 Mol:3
83: [10:57:11] Rep: 10 Mol:9
83: [10:57:11] Rep: 10 Mol:7
83: [10:57:11] Rep: 10 Mol:11
83: [10:57:11] Rep: 10 Mol:15
83: [10:57:11] Rep: 10 Mol:13
83: [10:57:11] Rep: 10 Mol:19
83: [10:57:11] Rep: 10 Mol:17
83: [10:57:11] Rep: 10 Mol:23
83: [10:57:11] Rep: 10 Mol:21
83: [10:57:11] Rep: 10 Mol:0
83: [10:57:11] Rep: 10 Mol:27
83: [10:57:11] Rep: 10 Mol:4
83: [10:57:11] Rep: 10 Mol:25
83: [10:57:11] Rep: 10 Mol:31
83: [10:57:11] Rep: 10 Mol:8
83: [10:57:11] Rep: 10 Mol:29
83: [[10:57:11] Rep: 10 Mol:35
83: [10:57:11] Rep: 10 Mol:12
83: [10:57:11] Rep: 10 Mol:39
83: 10:57:11] Rep: 10 Mol:33
83: [10:57:11] Rep: 10 Mol:2
83: [10:57:11] Rep: 10 Mol:16
83: [10:57:11] Rep: 10 Mol:6
83: [10:57:11] Rep: 10 Mol:43
83: [10:57:11] Rep: 10 Mol:10
83: [10:57:11] Rep: 10 Mol:37
83: [10:57:11] Rep: 10 Mol:14
83: [10:57:11] Rep: 10 Mol:47
83: [10:57:11] Rep: 10 Mol:20
83: [10:57:11] Rep: 10 Mol:18
83: [10:57:11] Rep: 10 Mol:22
83: [10:57:11] Rep: 10 Mol:41
83: [10:57:11] Rep: 10 Mol:26
83: [10:57:11] Rep: 10 Mol:24
83: [10:57:11] Rep: 10 Mol:51
83: [10:57:11] Rep: 10 Mol:45
83: [10:57:11] Rep: 10 Mol:55
83: [10[10:57:11] Rep: 10 Mol:30
83: :57:11] Rep: 10 Mol:28
83: [10:57:11] Rep: 10 Mol:49
83: [10:57:11] Rep: 10 Mol:34
83: [10:57:11] Rep: 10 Mol:32
83: [10:57:11] Rep: 10 Mol:53
83: [10:57:11] Rep: 10 Mol:38
83: [10:57:11] Rep: 10 Mol:36
83: [10:57:11] Rep: 10 Mol:40
83: [10:57:11] Rep: 10 Mol:42
83: [10:57:12] Rep: 10 Mol:44
83: [10:57:12] Rep: 10 Mol:48
83: [10:57:12] Rep: 10 Mol:46
83: [10:57:12] Rep: 10 Mol:50
83: [10:57:12] Rep: 10 Mol:52
83: [10:57:12] Rep: 10 Mol:54
83: [10:57:15] Rep: 20 Mol:3
83: [10:57:15] Rep: 20 Mol:7
83: [10:57:15] Rep: 20 Mol:11
83: [10:57:15] Rep: 20 Mol:15
83: [10:57:15] Rep: 20 Mol:19
83: [10:57:15] Rep: 20 Mol:23
83: [10:57:15] Rep: 20 Mol:27
83: [10:57:15] Rep: 20 Mol:31
83: [10:57:15] Rep: 20 Mol:35
83: [10:57:15] Rep: 20 Mol:1
83: [10:57:15] Rep: 20 Mol:39
83: [10:57:16] Rep: 20 Mol:5
83: [10:57:16] Rep: 20 Mol:43
83: [10:57:16] Rep: 20 Mol:9
83: [10:57:16] Rep: 20 Mol:47
83: [10:57:16] Rep: 20 Mol:13
83: [10:57:16] Rep: 20 Mol:51
83: [10:57:16] Rep: 20 Mol:0
83: [10:57:16] Rep: 20 Mol:17
83: [10:57:16] Rep: 20 Mol:55
83: [10:57:16] Rep: 20 Mol:4
83: [10:57:16] Rep: 20 Mol:21
83: [10:57:16] Rep: 20 Mol:8
83: [10:57:16] Rep: 20 Mol:25
83: [10:57:16] Rep: 20 Mol:12
83: [10:57:16] Rep: 20 Mol:29
83: [10:57:16] Rep: 20 Mol:16
83: [10:57:16] Rep: 20 Mol:33
83: [10:57:16] Rep: 20 Mol:2
83: [10:57:16] Rep: 20 Mol:20
83: [10:57:16] Rep: 20 Mol:6
83: [10:57:16] Rep: 20 Mol:37
83: [10:57:16] Rep: 20 Mol:10
83: [10:57:16] Rep: 20 Mol:24
83: [10:57:16] Rep: 20 Mol:41
83: [10:57:16] Rep: 20 Mol:14
83: [10:57:16] Rep: 20 Mol:28
83: [10:57:16] Rep: 20 Mol:45
83: [10:57:16] Rep: 20 Mol:18
83: [10:57:16] Rep: 20 Mol:32
83: [10:57:16] Rep: 20 Mol:49
83: [10:57:16] Rep: 20 Mol:22
83: [10:57:16] Rep: 20 Mol:36
83: [10:57:16] Rep: 20 Mol:53
83: [10:57:16] Rep: 20 Mol:40
83: [10:57:16] Rep: 20 Mol:26
83: [10:57:16] Rep: 20 Mol:30
83: [10:57:16] Rep: 20 Mol:44
83: [10:57:16] Rep: 20 Mol:48
83: [10:57:16] Rep: 20 Mol:34
83: [10:57:16] Rep: 20 Mol:52
83: [10:57:16] Rep: 20 Mol:38
83: [10:57:16] Rep: 20 Mol:42
83: [10:57:16] Rep: 20 Mol:46
83: [10:57:16] Rep: 20 Mol:50
83: [10:57:16] Rep: 20 Mol:54
83: [10:57:20]   done
83: 	---------------------------------
83: 	 test O3A multithreading bug
83: 
83: [10:57:45]   done
83: 	---------------------------------
83: 	 testCrippenO3A multithreading
83: 
83: generating reference data
83: processing
83:  launch :0
83:  launch :1
83:  launch :2
83:  launch :3
83: [10:57:46] Rep: 0 Mol:0
83: [10:57:46] Rep: 0 Mol:2
83: [[10:57:46] Rep: 0 Mol:1
83: [10:57:46] Rep: 0 Mol:3
83: [10:57:46] Rep: 0 Mol:5
83: [10:57:46] Rep: 0 Mol:7
83: [10:57:46] Rep: 0 Mol:9
83: 10:57:46] Rep: 0 Mol:4
83: [10:57:46] Rep: 0 Mol:6
83: [10:57:46] Rep: 0 Mol:8
83: [10:57:46] Rep: 0 Mol:10
83: [10:57:46] Rep: 0 Mol:11
83: [10:57:46] Rep: 0 Mol:13
83: [10:57:46] Rep: 0 Mol:12
83: [10:57:46] Rep: 0 Mol:14
83: [10:57:46] Rep: 0 Mol:15
83: [10:57:46] Rep: 0 Mol:18
83: [10:57:46] Rep: 0 Mol:16
83: [10:57:46] Rep: 0 Mol:22
83: [10[10:57:46] Rep: 0 Mol:19
83: :57:46] Rep: 0 Mol:17
83: [[10:57:46] Rep: 0 Mol:20
83: [10:57:46] Rep: 0 Mol:23
83: 10:57:46] Rep: 0 Mol:21
83: [10:57:46] Rep: 0 Mol:24
83: [10:57:46] Rep: 0 Mol:26
83: [10:57:46] Rep: 0 Mol:28
83: [10:57:46] Rep: 0 Mol:25
83: [10:57:46] Rep: 0 Mol:32
83: [10:57:46] Rep: 0 Mol:27
83: [10:57:46] Rep: 0 Mol:36
83: [10:57:46] Rep: 0 Mol:30
83: [10:57:46] Rep: 0 Mol:40
83: [10:57:46] Rep: 0 Mol:44
83: [10:57:46] Rep: 0 Mol:48
83: [10:57:46] Rep: 0 Mol:29
83: [10:57:46] Rep: 0 Mol:31
83: [10:57:46] Rep: 0 Mol:52
83: [10:57:46] Rep: 0 Mol:34
83: [10:57:46] Rep: 0 Mol:33
83: [10:57:46] Rep: 0 Mol:35
83: [10:57:46] Rep: 0 Mol:38
83: [10:57:46] Rep: 0 Mol:39
83: [10:57:46] Rep: 0 Mol:37
83: [10:57:46] Rep: 0 Mol:43
83: [10:57:46] Rep: 0 Mol:42
83: [10:57:46] Rep: 0 Mol:41
83: [10:57:46] Rep: 0 Mol:47
83: [10:57:46] Rep: 0 Mol:46
83: [10:57:46] Rep: 0 Mol:51
83: [10:57:46] Rep: 0 Mol:45
83: [10:57:46] Rep: 0 Mol:49
83: [[10:57:46] Rep: 0 Mol:50
83: [10:57:46] Rep: 0 Mol:55
83: 10:57:46] Rep: 0 Mol:53
83: [10:57:46] Rep: 0 Mol:54
83: [10:57:48] Rep: 10 Mol:0
83: [10:57:48] Rep: 10 Mol:4
83: [10:57:48] Rep: 10 Mol:8
83: [10:57:48] Rep: 10 Mol:12
83: [10:57:48] Rep: 10 Mol:16
83: [10:57:48] Rep: 10 Mol:20
83: [10:57:48] Rep: 10 Mol:24
83: [10:57:48] Rep: 10 Mol:28
83: [10:57:48] Rep: 10 Mol:3
83: [10:57:48] Rep: 10 Mol:32
83: [10:57:48] Rep: 10 Mol:7
83: [10:57:48] Rep: 10 Mol:11
83: [10:57:48] Rep: 10 Mol:36
83: [10:57:48] Rep: 10 Mol:40
83: [10:57:48] Rep: 10 Mol:15
83: [10:57:48] Rep: 10 Mol:44
83: [[10:57:48] Rep: 10 Mol:19
83: 10:57:48] Rep: 10 Mol:48
83: [10:57:48] Rep: 10 Mol:23
83: [10:57:48] Rep: 10 Mol:52
83: [10:57:48] Rep: 10 Mol:27
83: [10:57:48] Rep: 10 Mol:31
83: [10:57:48] Rep: 10 Mol:1
83: [10:57:48] Rep: 10 Mol:35
83: [10:57:48] Rep: 10 Mol:5
83: [10:57:48] Rep: 10 Mol:9
83: [10:57:48] Rep: 10 Mol:39
83: [10:57:48] Rep: 10 Mol:13
83: [10:57:48] Rep: 10 Mol:43
83: [10:57:48] Rep: 10 Mol:47
83: [10:57:48] Rep: 10 Mol:17
83: [10:57:48] Rep: 10 Mol:51
83: [10:57:48] Rep: 10 Mol:21
83: [10:57:48] Rep: 10 Mol:55
83: [10:57:48] Rep: 10 Mol:2
83: [[10:57:48] Rep: 10 Mol:25
83: 10:57:48] Rep: 10 Mol:6
83: [10:57:48] Rep: 10 Mol:10
83: [10:57:48] Rep: 10 Mol:29
83: [10:57:48] Rep: 10 Mol:14
83: [10:57:48] Rep: 10 Mol:33
83: [[10:57:48] Rep: 10 Mol:18
83: 10:57:48] Rep: 10 Mol:37
83: [10:57:48] Rep: 10 Mol:22
83: [10:57:48] Rep: 10 Mol:26
83: [10:57:48] Rep: 10 Mol:41
83: [10:57:48] Rep: 10 Mol:30
83: [10:57:48] Rep: 10 Mol:45
83: [10:57:48] Rep: 10 Mol:49
83: [[10:57:48] Rep: 10 Mol:34
83: 10:57:48] Rep: 10 Mol:53
83: [10:57:48] Rep: 10 Mol:38
83: [10:57:48] Rep: 10 Mol:42
83: [10:57:48] Rep: 10 Mol:46
83: [10:57:48] Rep: 10 Mol:50
83: [10:57:48] Rep: 10 Mol:54
83: [10:57:50] Rep: 20 Mol:0
83: [10:57:50] Rep: 20 Mol:4
83: [10:57:50] Rep: 20 Mol:3
83: [10:57:50] Rep: 20 Mol:8
83: [10:57:50] Rep: 20 Mol:7
83: [10:57:50] Rep: 20 Mol:12
83: [10:57:50] Rep: 20 Mol:11
83: [[10:57:50] Rep: 20 Mol:16
83: 10:57:50] Rep: 20 Mol:15
83: [10:57:50] Rep: 20 Mol:20
83: [10:57:50] Rep: 20 Mol:19
83: [10:57:50] Rep: 20 Mol:24
83: [10:57:50] Rep: 20 Mol:23
83: [10:57:50] Rep: 20 Mol:28
83: [10:57:50] Rep: 20 Mol:27
83: [[10:57:50] Rep: 20 Mol:32
83: 10:57:50] Rep: 20 Mol:31
83: [10:57:50] Rep: 20 Mol:36
83: [[10:57:50] Rep: 20 Mol:35
83: [10:57:50] Rep: 20 Mol:40
83: 10:57:50] Rep: 20 Mol:39
83: [10:57:50] Rep: 20 Mol:44
83: [10:57:50] Rep: 20 Mol:48
83: [10:57:50] Rep: 20 Mol:43
83: [10:57:50] Rep: 20 Mol:47
83: [10:57:50] Rep: 20 Mol:1
83: [10:57:50] Rep: 20 Mol:52
83: [10:57:50] Rep: 20 Mol:5
83: [10:57:50] Rep: 20 Mol:51
83: [10:57:50] Rep: 20 Mol:9
83: [10:57:50] Rep: 20 Mol:55
83: [10:57:50] Rep: 20 Mol:13
83: [10:57:50] Rep: 20 Mol:17
83: [10:57:50] Rep: 20 Mol:21
83: [10:57:50] Rep: 20 Mol:25
83: [10:57:50] Rep: 20 Mol:29
83: [10:57:50] Rep: 20 Mol:33
83: [10:57:50] Rep: 20 Mol:37
83: [10:57:50] Rep: 20 Mol:41
83: [10:57:50] Rep: 20 Mol:2
83: [10:57:50] Rep: 20 Mol:45
83: [[10:57:50] Rep: 20 Mol:6
83: [10:57:50] Rep: 20 Mol:10
83: 10:57:50] Rep: 20 Mol:49
83: [10:57:50] Rep: 20 Mol:53
83: [10:57:50] Rep: 20 Mol:14
83: [10:57:50] Rep: 20 Mol:18
83: [10:57:50] Rep: 20 Mol:22
83: [10:57:50] Rep: 20 Mol:26
83: [10:57:51] Rep: 20 Mol:30
83: [10:57:51] Rep: 20 Mol:34
83: [10:57:51] Rep: 20 Mol:38
83: [10:57:51] Rep: 20 Mol:42
83: [10:57:51] Rep: 20 Mol:46
83: [10:57:51] Rep: 20 Mol:50
83: [10:57:51] Rep: 20 Mol:54
83: [10:57:52]   done
83: 	---------------------------------
83: 	 test getO3AForProbeConfs
83: 
83: [10:58:02]   done
83: 	---------------------------------
83: 	 test O3A multithreading bug
83: 
83: [10:58:27]   done
83: ***********************************************************
 83/130 Test  #83: testMolAlign .......................   Passed   84.13 sec
test 84
        Start  84: pyMolAlign

84: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/testMolAlign.py"
84: Test timeout computed to be: 9.99988e+06
84: .................
84: ----------------------------------------------------------------------
84: Ran 17 tests in 7.739s
84: 
84: OK
84: Testing MolAlign Wrappers
 84/130 Test  #84: pyMolAlign .........................   Passed    7.92 sec
test 85
        Start  85: testFeatures

85: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/testFeatures
85: Test timeout computed to be: 9.99988e+06
85: [10:58:35] -------------------------------------
85: [10:58:35] AtomType parser testing.
85: [10:58:35] SMARTS Parse Error: syntax error for input: '[$([!$([NH0]);N,O,$([S]),$([N,O)])]'
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] FeatureDefinition parser testing.
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] Test pulling feat defs from a string.
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] FeatureDef functionality testing.
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] FeatureFactory testing.
85: [10:58:35] 1
85: [10:58:35] 2
85: [10:58:35] 3
85: [10:58:35] 4
85: [10:58:35] 5
85: [10:58:35] 6
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] Feature Location testing.
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] Test building a FeatureFactory from a file
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Issue 224.
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Issue 225.
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] Test Issue346
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] Test Issue347
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Issue 348.
85: [10:58:35] SMARTS Parse Error: syntax error for input: '[C[C]'
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Nested AtomType definitions.
85: [$([$([$([C;!$(C=[O,N,P,S]);!$(C#N)]),c]);R])]
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Github Issue #252: crash when calling getPos() with no conformer.
85: [10:58:35]      expect a precondition failure message below
85: [10:58:35] 
85: 
85: ****
85: Pre-condition Violation
85: molecule has no conformers
85: Violation occurred on line 37 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
85: Failed Expression: dp_mol->getNumConformers()
85: ****
85: 
85: [10:58:35]    Done
 85/130 Test  #85: testFeatures .......................   Passed    0.03 sec
test 86
        Start  86: pyChemicalFeatures

86: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py"
86: Test timeout computed to be: 9.99988e+06
86: ....[10:58:35] SMARTS Parse Error: syntax error for input: '[N,O;!HQ]'
86: ...
86: ----------------------------------------------------------------------
86: Ran 7 tests in 0.010s
86: 
86: OK
 86/130 Test  #86: pyChemicalFeatures .................   Passed    0.13 sec
test 87
        Start  87: testShapeHelpers

87: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/testShapeHelpers
87: Test timeout computed to be: 9.99988e+06
87: ***********************************************************
87: Testing ShapeHelpers
87: 	---------------------------------
87: 	 test1Encode 
87: 
87: 	---------------------------------
87: 	 test2Compare 
87: 
87: ***********************************************************
 87/130 Test  #87: testShapeHelpers ...................   Passed    0.02 sec
test 88
        Start  88: pyShapeHelpers

88: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py"
88: Test timeout computed to be: 9.99988e+06
88: .
88: ----------------------------------------------------------------------
88: Ran 1 test in 0.029s
88: 
88: OK
88: Testing Shape Helpers wrapper
 88/130 Test  #88: pyShapeHelpers .....................   Passed    0.15 sec
test 89
        Start  89: testMolCatalog

89: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/testMolCatalog
89: Test timeout computed to be: 9.99988e+06
89: [10:58:36] >>------------- Test 1
89: [10:58:36] <<-------------- Done
 89/130 Test  #89: testMolCatalog .....................   Passed    0.01 sec
test 90
        Start  90: pyMolCatalog

90: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/rough_test.py"
90: Test timeout computed to be: 9.99988e+06
90: .
90: ----------------------------------------------------------------------
90: Ran 1 test in 0.007s
90: 
90: OK
 90/130 Test  #90: pyMolCatalog .......................   Passed    0.11 sec
test 91
        Start  91: moldraw2DTest1

91: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/moldraw2DTest1
91: Test timeout computed to be: 9.99988e+06
91:  ----------------- Test 1
91:  Done
91:  ----------------- Test 2
91:  Done
91:  ----------------- Test 4
91:  Done
91:  ----------------- Test 5
91:  Done
91:  ----------------- Test 6 (atom labels)
91:  Done
91:  ----------------- Test 7 (backgrounds)
91:  Done
91:  ----------------- Test8: PrepareMolDrawing
91:  Done
91:  ----------------- Test multi-threaded drawing
91: reading molecules
91: generating reference drawings
91: processing
91:  launch :0
91:  launch :1
91:  launch :2
91:  launch :3
91:  ----------------- Test Github #781: Rendering single-atom molecules
91:  Done
91:  ----------------- Test 3
91:  Done
91:  Done
91:  ----------------- Test Github774
91:  Done
91:  ----------------- Test 9 (molecule legends)
91:  Done
91:  ----------------- Test Github852: Lines used to wedge bonds are too thick
91:  Done
91:  ----------------- Test Github860: Atom symbols in wrong order if bond comes from right
91:  Done
91:  ----------------- Test Github #910: ugly coordinates generated for peptide chains
91:  Done
91:  ----------------- Test Github #932: mistake in SVG for wedged bonds
91:  Done
91:  ----------------- Test Github #953: default color should not be cyan
91:  Done
91:  ----------------- Test Github #983: wedged bonds between chiral centers drawn improperly
91:  Done
91:  ----------------- Test Deuterium, Tritium
91:  Done
91:  ----------------- Test crossed bonds
91:  Done
91:  ----------------- Testing drawing a second molecule
91:  Done
91:  ----------------- Testing drawing a grid of molecules
91:  Done
91:  ----------------- Testing drawMolecules
91:  Done
91:  ----------------- Test JSON Configuration
91:  Done
91:  ----------------- Testing github 1090: escape html characters in SVG output
91:  Done
91:  ----------------- Testing github 1035: overflow bug in SVG color generation
91:  Done
91:  ----------------- Testing github 1271: MolDraw2D not drawing anything for molecules aligned with the X or Y axes
91:  Done
91:  ----------------- Testing github 1322: add custom atom labels
91:  Done
91:  ----------------- Testing github 565: support a fixed bond length in the MolDraw2D code
91:  Done
91:  ----------------- Testing use of a black & white palette
91:  Done
91:  ----------------- Testing use of continuous highlighting with drawMolecules
91:  Done
 91/130 Test  #91: moldraw2DTest1 .....................   Passed    1.82 sec
test 92
        Start  92: moldraw2DRxnTest1

92: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/moldraw2DRxnTest1
92: Test timeout computed to be: 9.99988e+06
92:  ----------------- Test 1
92:  Done
92:  ----------------- Test 2: some examples that caused problems in testing
92: 3 [cH:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1>>CC(C)[c:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1	CN1CCC(CC1)N(C)S(=O)(=O)c2ccccc2	CC(C)c1ccc(cc1)S(=O)(=O)N(C)C2CCN(CC2)C
92: 3 [cH:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1>>[cH:3]1[cH:2][c:1]([cH:6][cH:5][c:4]1)Cl	Cc1cccc(c1C)N2CCN(CC2)CCCNC(=O)c3cc([nH]c3C)c4ccccc4	Cc1cccc(c1C)N2CCN(CC2)CCCNC(=O)c3cc([nH]c3C)c4ccc(cc4)Cl
92: 2 Cc1c(cc([nH]1)[c:1]2[cH:2][cH:3][cH:4][cH:5][cH:6]2)[C:7](=[O:8])[NH:9][CH2:10][CH2:11]>>CCc1nc(c(n1[c:1]2[cH:2][cH:3][cH:4][cH:5][cH:6]2)C)[C:7](=[O:8])[NH:9][CH2:10][CH2:11]	Cc1c(cc([nH]1)c2ccccc2)C(=O)NCCN3CCN(C
92: 2 C3)c4cccc(c4Cl)Cl	CCc1nc(c(n1c2ccccc2)C)C(=O)NCCN3CCN(CC3)c4cccc(c4Cl)Cl
92: 3 [c:1][C:2](=[O:3])[NH:4]CCC[CH2:5][N:6]([CH2:7])[CH2:8]>>[c:1][C:2](=[O:3])[NH:4]C[CH2:5][N:6]([CH2:7])[CH2:8]	CCCn1c(c(cc1c2ccccc2)C(=O)NCCCCN3CCN(CC3)c4cccc(c4Cl)Cl)C	CCCn1c(c(cc1c2ccccc2)C(=O)NCCN3CCN(CC3)c4cccc(c4Cl)Cl)C
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: 3 [CH3:1]c1c(cc(n1[CH3:2])C(C)(C)C)[C:3]>>[CH3:2]c1c(c(nc(n1)[CH3:1])[C:3])OC	Cc1cccc(c1C)N2CCN(CC2)CCNC(=O)c3cc(n(c3C)C)C(C)(C)C	Cc1cccc(c1C)N2CCN(CC2)CCNC(=O)c3c(c(nc(n3)C)C)OC
92:  Done
92:  ----------------- Test 3: test reactant highlighting
92:  Done
92:  ----------------- Test 4: some examples from SMARTS in testing
92: draw!
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8
92: 
92: [10:58:38] Explicit valence for atom # 1 N, 4, is greater than permitted
92: [10:58:38] Explicit valence for atom # 13 N, 4, is greater than permitted
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8
92: 
92: [10:58:38] Explicit valence for atom # 1 N, 4, is greater than permitted
92: [10:58:38] Explicit valence for atom # 13 N, 4, is greater than permitted
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: 
92:  done
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92:  Done
 92/130 Test  #92: moldraw2DRxnTest1 ..................   Passed    0.22 sec
test 93
        Start  93: pyMolDraw2D

93: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py"
93: Test timeout computed to be: 9.99988e+06
93: ..............
93: ----------------------------------------------------------------------
93: Ran 14 tests in 0.019s
93: 
93: OK
 93/130 Test  #93: pyMolDraw2D ........................   Passed    0.19 sec
test 94
        Start  94: testFMCS

94: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/testFMCS
94: Test timeout computed to be: 9.99988e+06
94: [10:58:38] *******************************************************
94: [10:58:38] FMCS Unit Test 
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testJSONParameters
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] FMCS test1Basics()
94: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test32
94: 
94:  test32()
94: MCS: [#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#6]=[#6]-[#6](-[#7]-[#6]1:[#6]:[#6](-[#16](-[#7]2-[#6]-[#6]-[#8]-[#6]-[#6]-2)(=[#8])=[#8]):[#6]:[#6]:[#6]:1-[#7](-[#6]-[#6])-[#6]-[#6])=[#8] 31 atoms, 33 bonds
94: Time elapsed 0.079 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test190
94: 
94:  test190()
94: MCS: [#6]1:[#6]:[#6]2:[#8]:[#6](-[#6]3:[#6]:[#6](-[#7]-[#6](=[#8])-[#6]):[#6]:[#6]:[#6]:3):[#7]:[#6]:2:[#6]:[#6]:1 19 atoms, 21 bonds
94: Time elapsed 0.014 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test3
94: 
94:  test3()
94: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6]-[#6](=[#8])-[#7]-[#6]-[#6]-[#6]-[#6] 14 atoms, 14 bonds
94: Time elapsed 0.019 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testSimpleFast
94: 
94: testSimpleFast()
94: MCS: [#6]-[#8]-[#6]-[#6]1:[#6]:[#7]:[#6]:[#6](:[#6]:1):[#7]:[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#8]-[#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#17] 24 atoms, 26 bonds
94: Time elapsed 0.142 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testSimple
94: 
94: testSimple()
94: MCS: [#6]-[#6]-[#6](-[#7]-[#6](=[#8])-[#6]-[#7]-[#6](=[#8])-[#6])-[#6](-[#7]-[#6])=[#8] 15 atoms, 14 bonds
94: Time elapsed 0.165 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testSegFault
94: 
94: testSegFault()
94: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1 6 atoms, 6 bonds
94: Time elapsed 0.004 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testThreshold
94: 
94: testThreshold()
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testRing1
94: 
94: testRing1()
94: MCS: [#6]1:[#6]:[#7]:[#6](:[#6]:[#6]:1)-[#6](=[#8])-[#8]-[#6](-[#6])-[#6] 12 atoms, 12 bonds
94: Time elapsed 0.003 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testAtomCompareIsotopes
94: 
94: testAtomCompareIsotopes()
94: MCS: [0*]-[0*]-[13*] 3 atoms, 2 bonds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testAtomCompareAnyAtom
94: 
94: testAtomCompareAnyAtom()
94: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testAtomCompareAnyAtomBond
94: 
94: testAtomCompareAnyAtom()
94: MCS: [#6]1-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:1=,-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test18
94: 
94: test18()
94: Query +MAP [CH3:0][c:1]1[n:2][c:3]([CH2:4][N:5]([CH:6]([CH3:7])[c:8]2[n:9][cH:10][cH:11][cH:12][cH:13]2)[CH2:14][CH2:15][CH2:16][CH2:17][NH2:18])[cH:19][cH:20][cH:21]1
94: MCS: [#6](:[#7]:[#6]-[#6]-[#7](-[#6](-[#6])-[#6]1:[#7]:[#6]:[#6]:[#6]:[#6]:1)-[#6]-[#6]-[#6]-[#6]-[#7]):[#6]:[#6]:[#6] 21 atoms, 21 bonds
94: Time elapsed 0.008 seconds
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test504
94: 
94: test504()
94: Query +MAP [CH2:0]([CH2:1][CH2:2][NH:3][C:4]([CH:5]1[CH2:6][CH:7]1[c:8]1[c:9][c:10]([Cl:11])[c:12]([Cl:13])[cH:14][c:15]1)=[O:16])[CH2:17][CH2:18][N:19]1[CH2:20][CH2:21][CH:22]([NH:23][C:24]([NH:25][c:26]2[cH:27][cH:28][c:29]([Cl:30])[cH:31][cH:32]2)=[O:33])[CH2:34]1
94: MCS: [#6](-[#6]-[#6]-[#7]-[#6](-[#6]1-[#6]-[#6]-1-[#6]1:[#6]:[#6](-[#17]):[#6](:[#6]:[#6]:1)-[#17])=[#8])-[#6]-[#6]-[#7](-[#6]-[#6]-[#6]-[#7]-[#6](-[#7]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)=[#8])-[#6] 34 atoms, 36 bonds
94: Time elapsed 0.101 seconds
94: [10:58:39] 	done
94: [10:58:39] -------------------------------------
94: [10:58:39] FMCS testInitialSeed()
94: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
94: Time elapsed 0.001 seconds
94: [10:58:39] 	done
94: [10:58:39] -------------------------------------
94: [10:58:39] FMCS testInitialSeed2()
94: [10:58:39] initial_smarts: CCNCCNcccccccnC1CC1
94: [10:58:39] RDKit MATCHED Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1
94: [10:58:39] RDKit MATCHED COc1c(N2CCNC(C)C2)c(F)cc2c(=O)c(C(=O)O)cn(C3CC3)c12
94: MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds
94: Time elapsed 0.028 seconds
94: [10:58:39] 
94: 
94: Found MCS as the only initial seed (25 atoms, 28 bonds): 
94: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6]
94: Query Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1 26(26) atoms, 29(28) bonds
94: 1 Seeds:1 MCS 25 atoms, 28 bonds for 0.0014 seconds. bond[0]=6
94: STATISTICS:
94: Total Growing Steps  = 1, MCS found on 1 step, for 0.0014 seconds
94: Initial   Seeds      = 1,  Mismatched 0
94: Inspected Seeds      = 2
94: Rejected by BestSize = 0
94: SingleBondExcluded   = 0
94: MatchCheck Seeds     = 2
94:      MatchCalls = 2
94:      MatchFound = 1
94:  fastMatchCalls = 1
94:  fastMatchFound = 0
94:  slowMatchCalls = 2
94:  slowMatchFound = 1
94:   DupCacheFound = 0   0 matched, 0 mismatched
94: HashCache size  = 1 keys
94: HashCache size  = 1 entries
94: FindHashInCache = 2
94: HashFoundInCache= 0
94: ExactMatchCalls = 0
94: ExactMatchFound = 0
94: [10:58:39] MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds
94: Time elapsed 0.002 seconds
94: [10:58:39] 	done
94: [10:58:39] 
94: -------------------------------------
94: [10:58:39] Testing github #481 : order dependence in FMCS with chirality
94: [10:58:39] **** mols:O[C@H](C)Cl   O[C@@H](C)Cl
94: query=OCCl SubstructMatch(useChirality=false) res =1 size=3
94: query=OCCl SubstructMatch(useChirality=true ) res =1 size=3
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6]-[#17] 3 atoms, 2 bonds
94: [10:58:39] ------ REVERSE mols -------- 
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6]-[#17] 3 atoms, 2 bonds
94: [10:58:39] **** mols:OC(C)Cl   O[C@H](C)Cl
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] ------ REVERSE mols -------- 
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS:  0 atoms, 0 bonds
94: [10:58:39] 	done
94: [10:58:39] 
94: -------------------------------------
94: [10:58:39] Testing FMCS testChirality
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = C(F)C useChirality = 0
94: res sub = 1 size=3
94: MCS: [#9]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = C(F)C useChirality = 1
94: res sub = 1 size=3
94: MCS: [#9]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = CC[C@H](F)Cl query = CCC useChirality = 0
94: res sub = 1 size=3
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = CC[C@H](F)Cl query = CCC useChirality = 1
94: res sub = 1 size=3
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = CCC(F)Cl query = CC useChirality = 0
94: res sub = 1 size=2
94: MCS: [#6]-[#6] 2 atoms, 1 bonds
94: [10:58:39] -------------------------------------
94: test target = CCC(F)Cl query = CC useChirality = 1
94: res sub = 1 size=2
94: MCS: [#6]-[#6] 2 atoms, 1 bonds
94: [10:58:39] -------------------------------------
94: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 0
94: res sub = 1 size=4
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 1
94: res sub = 1 size=4
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 0
94: res sub = 1 size=4
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 1
94: res sub = 1 size=4
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = CC(F)C useChirality = 0
94: res sub = 0 size=0
94: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = CC(F)C useChirality = 1
94: res sub = 0 size=0
94: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = OC(F)C useChirality = 0
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = OC(F)C useChirality = 1
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 0
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 1
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 0
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 1
94: res sub = 0 size=0
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = OC(F)C useChirality = 0
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = OC(F)C useChirality = 1
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = O[C@H](F)C useChirality = 0
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = O[C@H](F)C useChirality = 1
94: res sub = 0 size=0
94: MCS:  0 atoms, 0 bonds
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 0
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 1
94: res sub = 0 size=0
94: MCS:  0 atoms, 0 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 0
94: res sub = 1 size=3
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 1
94: res sub = 1 size=3
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 0
94: res sub = 1 size=3
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 1
94: res sub = 1 size=3
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: 
94: 0. <<<<<<<<< actual MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds >>>>>>>
94: [10:58:39] -------------------------------------
94: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 0
94: res sub = 1 size=3
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 1
94: res sub = 1 size=3
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: 	done
94: [10:58:39] -------------------------------------
94: [10:58:39] Testing github issue 631: FindMCS matchChiralTag=True does not match self
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]1-[#6]=[#6]-[#6]-[#7]-1-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 11 atoms, 12 bonds
94: 
94: [10:58:39] MCS: [#6]1-[#6]=[#6]-[#6]-[#7]-1-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 11 atoms, 12 bonds
94: 
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]-[#6]1:[#6]:[#6]2:[#6](:[#6]:[#6]:1-[#6])-[#6](=[#8])-[#7](-[#6]-2=[#8])-[#6]1-[#6]-[#6]-[#6](-[#7]-[#6]-1=[#8])=[#8] 21 atoms, 23 bonds
94: 
94: [10:58:39] MCS: [#6]-[#6]1:[#6]:[#6]2:[#6](:[#6]:[#6]:1-[#6])-[#6](=[#8])-[#7](-[#6]-2=[#8])-[#6]1-[#6]-[#6]-[#6](-[#7]-[#6]-1=[#8])=[#8] 21 atoms, 23 bonds
94: 
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: [10:58:39] ============================================
94: [10:58:39] 	done
94: [10:58:39] -------------------------------------
94: [10:58:39] Testing including formal charge in matches 
94: [10:58:39] MCS: [#6]-[#6]-[#7]-[#6] 4 atoms, 3 bonds
94: 
94: [10:58:39] MCS: [#6]-[#6] 2 atoms, 1 bonds
94: 
94: [10:58:39] ============================================
94: [10:58:39] 	done
94: TOTAL Time elapsed 0.64 seconds
94: [10:58:39] *******************************************************
 94/130 Test  #94: testFMCS ...........................   Passed    0.65 sec
test 95
        Start  95: pyFMCS

95: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/testFMCS.py"
95: Test timeout computed to be: 9.99988e+06
95: ..........
95: ----------------------------------------------------------------------
95: Ran 10 tests in 0.405s
95: 
95: OK
 95/130 Test  #95: pyFMCS .............................   Passed    0.52 sec
test 96
        Start  96: FMCStest

96: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/FMCStest
96: Test timeout computed to be: 9.99988e+06
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_15113.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_16613.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_30745.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_30861.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_31495.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_34869.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_36158.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_36559.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_37434.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_39147.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_43754.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_44011.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_44158.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_48076.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_48961.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_49648.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_49703.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_51128.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_51343.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_51842.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_54554.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_55749.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_17256.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20244.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20245.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30149.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30499.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_36186.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_39262.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_43966.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_45279.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_48029.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49064.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49801.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_50681.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_54039.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58265.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58358.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58866.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_60810.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21358.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21597.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30111.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30349.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31746.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31822.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_35220.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37603.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37964.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_39508.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42164.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42577.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_44072.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_45522.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46700.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46719.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46744.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_48517.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_49087.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_50034.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_51475.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53483.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53506.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_54598.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55614.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55737.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57090.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57705.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57785.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58463.txt
96: 
96: fopen testChEMBL_Txt(): No such file or directory
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96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58700.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61003.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61349.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_38526.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_50778.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_52179.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_54285.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_30224.txt
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96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_31222.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37349.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37369.txt
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96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37465.txt
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96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37541.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_38371.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44314.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44578.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_45765.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_46281.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_47928.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_50624.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51341.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51662.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51767.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53081.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53396.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53407.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_58823.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_59190.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_60672.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_61176.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_20905.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30074.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30175.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30423.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_31555.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_34878.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_35926.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_42168.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_20859.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30060.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30061.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30606.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30866.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_31249.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_34921.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_35188.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_36636.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_37466.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_39202.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_43952.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_49345.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_49591.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_49854.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_51416.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_53537.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_58879.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_60679.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_61269.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_20600.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_20859.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_30060.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_30606.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_30866.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_31558.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_35188.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_37466.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_43875.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_48911.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_49591.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_49854.txt
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_57887.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_60679.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_6857.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_15478.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_20853.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30840.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30862.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30918.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30994.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31014.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31508.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31623.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35003.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35004.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35281.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35957.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36520.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36641.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_38586.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_44431.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_45093.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_51302.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5247.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_52937.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_57198.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5739.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_6535.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20205.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20986.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_30091.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34698.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34705.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37038.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37272.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37447.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38909.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38953.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_39472.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_45825.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_47179.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49028.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49860.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_51984.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53395.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53826.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54121.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54530.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_55738.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_57725.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_58590.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_20432.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_30331.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_37956.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_48114.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_58566.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34731.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34818.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37318.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37339.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37564.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39504.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39561.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46082.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46089.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47349.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47757.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_51593.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_54754.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58262.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58958.txt
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_16827.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_20503.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_20724.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_30254.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_30321.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_30572.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_31116.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_31281.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_31443.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_34747.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_34920.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_35040.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_36623.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_37136.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_37208.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_38298.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_38554.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_39088.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_39543.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_44049.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_44562.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_45180.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_45867.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_46087.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_46829.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_47546.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_48395.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_50461.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_50765.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_51669.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_52381.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_57231.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_58246.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_30999.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31021.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31650.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_35011.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_37014.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_44598.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_48446.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50614.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50615.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50618.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_51950.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_31616.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_38381.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_45757.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_46816.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_50701.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_54049.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_57890.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_61045.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_30194.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_31421.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_35538.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_55727.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_60676.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_61130.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_6444.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_15623.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_20096.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_21591.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30184.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30380.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30745.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30861.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_31619.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_34869.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_35284.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_36158.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_36915.txt
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_37434.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_37541.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_37677.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_38837.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_39530.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_43793.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44158.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44164.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44579.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44593.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44692.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44914.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_45878.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48050.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48706.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48944.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48961.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_49880.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_50055.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_50512.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_51064.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_53537.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_55749.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_58879.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_6876.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_44664.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_46451.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_50640.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_56102.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_58015.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59089.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59092.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_61340.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_31458.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_38481.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_42104.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49475.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49933.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_50558.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_37249.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_39117.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_48227.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_48229.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_53969.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_54262.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_55353.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_61212.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20250.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20506.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20626.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20689.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_21358.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30158.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30349.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_34843.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_35220.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36318.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36800.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_39349.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45385.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45676.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46700.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46719.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_48517.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_52690.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_53483.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_55435.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_56102.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58015.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58375.txt
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58700.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_16724.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_2710.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_30128.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_31250.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_35519.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_36905.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_46788.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_4737.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_55736.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_57473.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_16146.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30313.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30539.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30653.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30988.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_31179.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_31339.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_3525.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_36886.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_37020.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_38128.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_43952.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_45210.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_45899.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_47889.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_51800.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_53158.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_5330.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_55648.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_56096.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_57287.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_57399.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_57606.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_58470.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_60894.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_15010.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_20304.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_20542.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_20788.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_21358.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_30349.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_31103.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_31764.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_31822.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_35220.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_37964.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_42164.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_44072.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_45522.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_46719.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_46744.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_48416.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_49740.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_50034.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_50640.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_53483.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_53506.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_53814.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_55435.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_56074.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_56107.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57090.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57705.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57785.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57861.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_58583.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_59089.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_59092.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_20600.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_30764.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_34876.txt
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_37427.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_38266.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_45283.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_46990.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_47123.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_47900.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_48050.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_48062.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_48076.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_50718.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_50972.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_51372.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_51830.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_53049.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_53505.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_54021.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_54565.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_54570.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_57666.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_57890.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_58072.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_58634.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_58643.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_59080.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_59202.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_59346.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_60379.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_60385.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_61098.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_31154.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_35648.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_48914.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_51975.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_52435.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_55790.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_58958.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_61146.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20191.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20562.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20606.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20607.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30003.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30402.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30726.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30924.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31457.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31460.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31600.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31620.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31640.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31782.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31797.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31829.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31856.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34690.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34691.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34694.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_35712.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37497.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37539.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48070.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48219.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48824.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48902.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_52867.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_53534.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_54570.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_58727.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60159.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60661.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_30037.txt
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_34734.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_35365.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_35787.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_36793.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_37845.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_38328.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_39374.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_43936.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_44059.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_44405.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_44424.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_45166.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_46158.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_46425.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_47187.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48435.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48817.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48849.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48957.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48965.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_49519.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_49921.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_50392.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_50972.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_52405.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_52442.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_53169.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_54640.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_57207.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_58537.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_58920.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_60358.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_16077.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_34943.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_36391.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_36574.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_52906.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_54642.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_16385.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_20333.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_20774.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_35825.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_37637.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_47741.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_48567.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_48841.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_49589.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_50564.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_51201.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_53150.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_55747.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_58276.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_20813.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_2331.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_2391.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_30374.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_30512.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_30796.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_31058.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_31450.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_36609.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_36636.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_38266.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_43800.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_47621.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_49433.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_49550.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_49865.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_51005.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_52373.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_53878.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_54554.txt
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_57508.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_57618.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_59484.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_6563.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_16845.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_37106.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_37272.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_47947.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_50754.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_55800.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_57380.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_35328.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_36137.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_38826.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_44596.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_51275.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_55671.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_20155.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_30616.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_30653.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_30988.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_31339.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_31527.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_31631.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_36047.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_36568.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_36636.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_37020.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_38128.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_43952.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_45210.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_47889.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_51064.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_51800.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_5330.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_57508.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_58470.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_60894.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_20730.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_20753.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_30097.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_30663.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_35365.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_35375.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_35918.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_36010.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_36780.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_36793.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_37845.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_39110.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_39546.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_43936.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_44405.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_44424.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_44683.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_45166.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_46648.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_46986.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_47070.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_47187.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_48435.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_48817.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49138.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49460.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49519.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49532.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49829.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_50608.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_54640.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_61082.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_15727.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_20155.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_30407.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_3525.txt
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_12377.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_1308.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_34759.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_35447.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_42214.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_45877.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_47082.txt
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_57082.txt
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13-10000-random-pairs.sdf
96: ERROR: RDKit could not load input file
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_pairs.smi
96: ERROR: RDKit could not load input file
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_knearest_2.smi
96: ERROR: RDKit could not load input file
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_knearest_10.smi
96: ERROR: RDKit could not load input file
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_knearest_100.smi
96: ERROR: RDKit could not load input file
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_threshold_80.smi
96: ERROR: RDKit could not load input file
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_threshold_90.smi
96: ERROR: RDKit could not load input file
 96/130 Test  #96: FMCStest ...........................   Passed    0.05 sec
test 97
        Start  97: testMolHash

97: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/testMolHash
97: Test timeout computed to be: 9.99988e+06
97: Hash size = 32 bits.
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test1 DEFAULT ARGUMENTS
97: Hash size = 32 bits.
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test2 CHIRALITY == ATOM
97: Hash size = 32 bits.
97: 1803875862 = FvaEaw | C[C@H](F)Cl
97: 1803875862 = FvaEaw | C[C@@H](F)Cl
97: 1803875862 = FvaEaw | CC(F)Cl
97: 1803875862 = FvaEaw | [13CH3]C(F)Cl
97: 1803875862 = FvaEaw | C[C@H](Cl)F
97: 1803875862 = FvaEaw | C[C@@H](Cl)F
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test21 CHIRALITY == BOND
97: Hash size = 32 bits.
97: 2682339084 = DD/hnw | C/C=C/C
97: 2682339084 = DD/hnw | CC=CC
97: 2682339084 = DD/hnw | C/C=C\C
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test3 CHIRALITY DIFF
97: 396390390 = 9m+gFw  C[C@H](F)Cl
97: 165703670 = 9m/gCQ  C[C@@H](F)Cl
97: 627077110 = 9m9gJQ  CC(F)Cl
97: 1767927798 = 9m9gaQ  [13CH3]C(F)Cl
97: 487785244 = HAMTHQ  C[C@H]1CC[C@H](C)CC1
97: 1886585628 = HANzcA  C[C@H]1CC[C@@H](C)CC1
97: 3383952156 = HAOzyQ  CC1CCC(C)CC1
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test3a CHIRALITY EQUAL
97: 396390390 396390390
97: 165703670 165703670
97: 1432360172 1432360172
97: 1432360172 638829804
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test4 STRING
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNTmug-IhGA6w-9m+gFw  C[C@H](F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNSixQ-IhGA6w-9m/gCQ  C[C@@H](F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNQqsA-IhGA6w-9m9gJQ  CC(F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNQqjw-IhGA6w-9m9gaQ  [13CH3]C(F)Cl
97: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP6lAg-xKA4jw-HAMTHQ  C[C@H]1CC[C@H](C)CC1
97: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP49vg-xKA4jw-HANzcA  C[C@H]1CC[C@@H](C)CC1
97: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP4NRw-xKA4jw-HAOzyQ  CC1CCC(C)CC1
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test5 
97: [10:58:39] 	done
 97/130 Test  #97: testMolHash ........................   Passed    0.14 sec
test 98
        Start  98: pyMolHash

98: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/testMolHash.py"
98: Test timeout computed to be: 9.99988e+06
98: 
98: ----------------------------------------------------------------------
98: Ran 0 tests in 0.000s
98: 
98: OK
 98/130 Test  #98: pyMolHash ..........................   Passed    0.10 sec
test 99
        Start  99: testMMPA

99: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/testMMPA
99: Test timeout computed to be: 9.99988e+06
99: [10:58:39] *******************************************************
99: [10:58:39] MMPA Unit Test 
99: 
99: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1
99: Time elapsed 0.003242 seconds
99:  1: res= NULL,C[*:1].C[C:2](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1
99:  1: NOREF. Reference data NOT LISTED in test case.
99:  2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:3](C(=O)N[*:2])[NH+]1CCCC1
99:  2: NOREF. Reference data NOT LISTED in test case.
99:  3: res= O=C(Nc1ccccc1[*:1])[*:2],C[*:1].C[C:3]([NH+]1CCCC1)[*:2]
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  4: res= O=C(Nc1ccccc1[*:1])[C:0]([NH+]1CCCC1)[*:2],C[*:1].C[*:2]
99:  4: NOREF. Reference data NOT LISTED in test case.
99:  5: res= O=C(Nc1ccccc1[*:1])[C:0]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].C[*:2]
99:  5: NOREF. Reference data NOT LISTED in test case.
99:  6: res= C[C:0](C(=O)Nc1ccccc1[*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  7: res= NULL,C[C:2](C(=O)N[*:1])[NH+]1CCCC1.Cc1ccccc1[*:1]
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  8: res= O=C(N[*:3])[*:1],C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1[*:3]
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  9: res= O=C(N[*:2])[C:0]([NH+]1CCCC1)[*:1],C[*:1].Cc1ccccc1[*:2]
99:  9: NOREF. Reference data NOT LISTED in test case.
99: 10: res= O=C(N[*:3])[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1].Cc1ccccc1[*:3]
99: 10: NOREF. Reference data NOT LISTED in test case.
99: 11: res= C[C:0](C(=O)N[*:2])[*:1],C1CC[NH+]([*:1])C1.Cc1ccccc1[*:2]
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 12: res= NULL,C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1NC(=O)[*:1]
99: 12: NOREF. Reference data NOT LISTED in test case.
99: 13: res= C1CC[NH+]([C:0]([*:1])[*:2])C1,C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 13: NOREF. Reference data NOT LISTED in test case.
99: 14: res= [C:0]([*:1])([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 14: NOREF. Reference data NOT LISTED in test case.
99: 15: res= C[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.Cc1ccccc1NC(=O)[*:1]
99: 15: NOREF. Reference data NOT LISTED in test case.
99: 16: res= NULL,C[*:1].Cc1ccccc1NC(=O)[C:2]([NH+]1CCCC1)[*:1]
99: 16: NOREF. Reference data NOT LISTED in test case.
99: 17: res= Cc1ccccc1NC(=O)[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99: 17: NOREF. Reference data NOT LISTED in test case.
99: 18: res= NULL,C1CC[NH+]([*:1])C1.Cc1ccccc1NC(=O)[C:2](C)[*:1]
99: 18: NOREF. Reference data NOT LISTED in test case.
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  1: Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1,Case1,[*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:2].Cc1ccccc1NC(=O)[*:1]
99:  -----------------------------------
99: [10:58:39] -------------------------------------
99: [10:58:39] MMPA test2()
99: 
99: Time elapsed 0.002657 seconds
99: 
99: TEST 1 mol: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717
99:    1: NULL, C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O
99:  1: PASSED. matchedRefRes = 4
99:    2: O=[n+]1c([*:2])c([*:1])n([O-])c2ccccc21, C[*:1].O=C(NCCO)[*:2]
99:  2: PASSED. matchedRefRes = 1
99:    3: O=C(N[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].OCC[*:2]
99:  3: PASSED. matchedRefRes = 6
99:    4: O=C(NC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].OC[*:2]
99:  4: PASSED. matchedRefRes = 13
99:    5: O=C(NCC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].O[*:2]
99:  5: PASSED. matchedRefRes = 12
99:    6: NULL, Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O=C(NCCO)[*:1]
99:  6: PASSED. matchedRefRes = 10
99:    7: O=C(N[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:  7: NOREF. Reference data NOT LISTED in test case.O=C(N[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:    8: O=C(NC[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:  8: NOREF. Reference data NOT LISTED in test case.O=C(NC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:    9: O=C(NCC[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:  9: NOREF. Reference data NOT LISTED in test case.O=C(NCC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:    10: NULL, Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99: 10: PASSED. matchedRefRes = 3
99:    11: C([*:1])[*:2], Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 11: NOREF. Reference data NOT LISTED in test case.C([*:1])[*:2],Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:    12: C(C[*:2])[*:1], Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 12: PASSED. matchedRefRes = 8
99:    13: NULL, Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 13: PASSED. matchedRefRes = 9
99:    14: C([*:1])[*:2], Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 14: PASSED. matchedRefRes = 11
99:    15: NULL, Cc1c(C(=O)NCC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:1]
99: 15: PASSED. matchedRefRes = 2
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  5: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,C([*:1])[*:2],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  7: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(N[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:2]
99: 14: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NCC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 15: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  -----------------------------------
99: [10:58:39] 	Done
99: [10:58:39] -------------------------------------
99: [10:58:39] MMPA test3()
99: 
99: 
99: TEST mol: ZINC21984717 Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717
99: Time elapsed 0.002715 seconds
99:  1: res= NULL,C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O
99:  1: PASSED. matchedRefRes = 4
99:  2: res= O=[n+]1c([*:2])c([*:1])n([O-])c2ccccc21,C[*:1].O=C(NCCO)[*:2]
99:  2: PASSED. matchedRefRes = 1
99:  3: res= O=C(N[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].OCC[*:2]
99:  3: PASSED. matchedRefRes = 6
99:  4: res= O=C(NC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].OC[*:2]
99:  4: PASSED. matchedRefRes = 13
99:  5: res= O=C(NCC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].O[*:2]
99:  5: PASSED. matchedRefRes = 12
99:  6: res= NULL,Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O=C(NCCO)[*:1]
99:  6: PASSED. matchedRefRes = 10
99:  7: res= O=C(N[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  8: res= O=C(NC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  9: res= O=C(NCC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:  9: NOREF. Reference data NOT LISTED in test case.
99: 10: res= NULL,Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99: 10: PASSED. matchedRefRes = 3
99: 11: res= C([*:1])[*:2],Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 12: res= C(C[*:2])[*:1],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 12: PASSED. matchedRefRes = 8
99: 13: res= NULL,Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 13: PASSED. matchedRefRes = 9
99: 14: res= C([*:1])[*:2],Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 14: PASSED. matchedRefRes = 11
99: 15: res= NULL,Cc1c(C(=O)NCC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:1]
99: 15: PASSED. matchedRefRes = 2
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  5: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,C([*:1])[*:2],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  7: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(N[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:2]
99: 14: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NCC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 15: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  -----------------------------------
99: 
99: TEST mol: Case1-SIMPLE CC(N1CC1)C(=O) Case1-SIMPLE
99: Time elapsed 0.000711 seconds
99:  1: res= NULL,C[*:1].O=CC(N1CC1)[*:1]
99:  1: PASSED. matchedRefRes = 2
99:  2: res= O=CC([*:1])[*:2],C1CN1[*:2].C[*:1]
99:  2: PASSED. matchedRefRes = 3
99:  3: res= C([*:1])([*:2])[*:3],C1CN1[*:3].C[*:1].O=C[*:2]
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  4: res= C1CN1C([*:1])[*:2],C[*:1].O=C[*:2]
99:  4: PASSED. matchedRefRes = 4
99:  5: res= NULL,C1CN1[*:1].CC(C=O)[*:1]
99:  5: PASSED. matchedRefRes = 5
99:  6: res= CC([*:1])[*:2],C1CN1[*:2].O=C[*:1]
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  7: res= NULL,CC(N1CC1)[*:1].O=C[*:1]
99:  7: PASSED. matchedRefRes = 7
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  1: CC(N1CC1)C(=O),Case1-SIMPLE,C([*:1])([*:2])[*:3],C1CN1[*:2].C[*:1].O=C[*:3]
99:  6: CC(N1CC1)C(=O),Case1-SIMPLE,CC([*:1])[*:2],C1CN1[*:1].O=C[*:2]
99:  -----------------------------------
99: 
99: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1
99: Time elapsed 0.002946 seconds
99:  1: res= NULL,C[*:1].C[C:2](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1
99:  1: NOREF. Reference data NOT LISTED in test case.
99:  2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:3](C(=O)N[*:2])[NH+]1CCCC1
99:  2: NOREF. Reference data NOT LISTED in test case.
99:  3: res= O=C(Nc1ccccc1[*:1])[*:2],C[*:1].C[C:3]([NH+]1CCCC1)[*:2]
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  4: res= O=C(Nc1ccccc1[*:1])[C:0]([NH+]1CCCC1)[*:2],C[*:1].C[*:2]
99:  4: NOREF. Reference data NOT LISTED in test case.
99:  5: res= O=C(Nc1ccccc1[*:1])[C:0]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].C[*:2]
99:  5: NOREF. Reference data NOT LISTED in test case.
99:  6: res= C[C:0](C(=O)Nc1ccccc1[*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  7: res= NULL,C[C:2](C(=O)N[*:1])[NH+]1CCCC1.Cc1ccccc1[*:1]
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  8: res= O=C(N[*:3])[*:1],C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1[*:3]
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  9: res= O=C(N[*:2])[C:0]([NH+]1CCCC1)[*:1],C[*:1].Cc1ccccc1[*:2]
99:  9: NOREF. Reference data NOT LISTED in test case.
99: 10: res= O=C(N[*:3])[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1].Cc1ccccc1[*:3]
99: 10: NOREF. Reference data NOT LISTED in test case.
99: 11: res= C[C:0](C(=O)N[*:2])[*:1],C1CC[NH+]([*:1])C1.Cc1ccccc1[*:2]
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 12: res= NULL,C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1NC(=O)[*:1]
99: 12: NOREF. Reference data NOT LISTED in test case.
99: 13: res= C1CC[NH+]([C:0]([*:1])[*:2])C1,C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 13: NOREF. Reference data NOT LISTED in test case.
99: 14: res= [C:0]([*:1])([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 14: NOREF. Reference data NOT LISTED in test case.
99: 15: res= C[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.Cc1ccccc1NC(=O)[*:1]
99: 15: NOREF. Reference data NOT LISTED in test case.
99: 16: res= NULL,C[*:1].Cc1ccccc1NC(=O)[C:2]([NH+]1CCCC1)[*:1]
99: 16: NOREF. Reference data NOT LISTED in test case.
99: 17: res= Cc1ccccc1NC(=O)[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99: 17: NOREF. Reference data NOT LISTED in test case.
99: 18: res= NULL,C1CC[NH+]([*:1])C1.Cc1ccccc1NC(=O)[C:2](C)[*:1]
99: 18: NOREF. Reference data NOT LISTED in test case.
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  1: Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1,Case1,[*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:2].Cc1ccccc1NC(=O)[*:1]
99:  -----------------------------------
99: 
99: TEST mol: Case2 O=C(OCc1ccccc1)C(O)c1ccccc1 Case2
99: Time elapsed 0.006110 seconds
99:  1: res= NULL,O=C(O[*:1])C(O)c1ccccc1.c1ccc(C[*:1])cc1
99:  1: NOREF. Reference data NOT LISTED in test case.
99:  2: res= C([*:1])[*:2],O=C(O[*:1])C(O)c1ccccc1.c1ccc([*:2])cc1
99:  2: NOREF. Reference data NOT LISTED in test case.
99:  3: res= O=C(O[*:2])[*:1],OC(c1ccccc1)[*:1].c1ccc(C[*:2])cc1
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  4: res= O=C(O[*:1])C(c1ccccc1)[*:2],O[*:2].c1ccc(C[*:1])cc1
99:  4: NOREF. Reference data NOT LISTED in test case.
99:  5: res= O=C(O[*:1])C([*:2])[*:3],O[*:2].c1ccc(C[*:1])cc1.c1ccc([*:3])cc1
99:  5: NOREF. Reference data NOT LISTED in test case.
99:  6: res= O=C(O[*:1])C(O)[*:2],c1ccc(C[*:1])cc1.c1ccc([*:2])cc1
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  7: res= NULL,O=C(OC[*:1])C(O)c1ccccc1.c1ccc([*:1])cc1
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  8: res= O=C(OC[*:2])[*:1],OC(c1ccccc1)[*:1].c1ccc([*:2])cc1
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  9: res= O=C(OC[*:2])C(c1ccccc1)[*:1],O[*:1].c1ccc([*:2])cc1
99:  9: NOREF. Reference data NOT LISTED in test case.
99: 10: res= O=C(OC[*:2])C([*:1])[*:3],O[*:1].c1ccc([*:2])cc1.c1ccc([*:3])cc1
99: 10: NOREF. Reference data NOT LISTED in test case.
99: 11: res= O=C(OC[*:1])C(O)[*:2],c1ccc([*:1])cc1.c1ccc([*:2])cc1
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 12: res= NULL,O=C(OCc1ccccc1)[*:1].OC(c1ccccc1)[*:1]
99: 12: NOREF. Reference data NOT LISTED in test case.
99: 13: res= c1ccc(C([*:1])[*:2])cc1,O=C(OCc1ccccc1)[*:1].O[*:2]
99: 13: NOREF. Reference data NOT LISTED in test case.
99: 14: res= C([*:1])([*:2])[*:3],O=C(OCc1ccccc1)[*:1].O[*:2].c1ccc([*:3])cc1
99: 14: PASSED. matchedRefRes = 1
99: 15: res= OC([*:1])[*:2],O=C(OCc1ccccc1)[*:1].c1ccc([*:2])cc1
99: 15: NOREF. Reference data NOT LISTED in test case.
99: 16: res= NULL,O=C(OCc1ccccc1)C(c1ccccc1)[*:1].O[*:1]
99: 16: NOREF. Reference data NOT LISTED in test case.
99: 17: res= O=C(OCc1ccccc1)C([*:1])[*:2],O[*:1].c1ccc([*:2])cc1
99: 17: NOREF. Reference data NOT LISTED in test case.
99: 18: res= NULL,O=C(OCc1ccccc1)C(O)[*:1].c1ccc([*:1])cc1
99: 18: NOREF. Reference data NOT LISTED in test case.
99: 
99:  --- ALL PASSED --- 
99:  -----------------------------------
99: [10:58:40] 	Done
99: [10:58:40] *******************************************************
99: 5 TEST CASES FAILED 
99: [10:58:40] *******************************************************
 99/130 Test  #99: testMMPA ...........................   Passed    0.10 sec
test 100
        Start 100: pyMMPA

100: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/testMMPA.py"
100: Test timeout computed to be: 9.99988e+06
100: .........
100: ----------------------------------------------------------------------
100: Ran 9 tests in 1.356s
100: 
100: OK
100/130 Test #100: pyMMPA .............................   Passed    1.47 sec
test 101
        Start 101: testStructChecker

101: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker
101: Test timeout computed to be: 9.99988e+06
101: [10:58:41] *******************************************************
101: [10:58:41] StructChecker Unit Test 
101: [10:58:41] -------------------------------------
101: [10:58:41] testFlags
101: [10:58:41] STEREO_ERROR
101: [10:58:41] STEREO_ERROR,TRANSFORMED
101: [10:58:41] 65407 = BAD_MOLECULE,ALIAS_CONVERSION_FAILED,STEREO_ERROR,STEREO_FORCED_BAD,ATOM_CLASH,ATOM_CHECK_FAILED,SIZE_CHECK_FAILED,,TRANSFORMED,FRAGMENTS_FOUND,EITHER_WARNING,DUBIOUS_STEREO_REMOVED,RECHARGED,STEREO_TRANSFORMED,TEMPLATE_TRANSFORMED,TAUTOMER_TRANSFORMED
101: [10:58:41]  STEREO_ERROR ,	 TRANSFORMED [xXx} = STEREO_ERROR,TRANSFORMED
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] testOptionsDefault
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] RES : 
101: [10:58:41] 1 : COC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
101: [10:58:41] RES : 
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] testOptionsJSON
101: [10:58:41] str='{}'
101: [10:58:41] str='{...error..}'
101: [10:58:41] JSON StructureCheck Options:expected object name
101: [10:58:41] str='{"Verbose": true, "CheckStereo": true}'
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] testLoadOptionsFromFiles FROM CURRENT (.../test) DIRECTORY
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] testOptionsDefault
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] RES : 
101: [10:58:41] 1 : COC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
101: [10:58:41] RES : 
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] test1
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] test2
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] testCheckAtom
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] 
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] testCheckAtom2
101: [10:58:41] substance Substance_310925001_310950000-003900.sdf
101: [10:58:41] Cc1nscc1[N+](=O)[O-]
101: [10:58:41] Cc1[nH+]scc1[N+](=O)[O-]
101: [10:58:41] RES: ATOM_CHECK_FAILED,TRANSFORMED
101: [10:58:41] substance Substance_310925001_310950000-012197.sdf
101: [10:58:41] [N-]=[N+]=NCC(F)(F)F
101: [10:58:41] [N-]=[N+]=NCC(F)(F)F
101: [10:58:41] RES: 
101: [10:58:41] substance Substance_310925001_310950000-021440.sdf
101: [10:58:41] O=COCO[N+](=O)[O-]
101: [10:58:41] O=COCO[N+](=O)[O-]
101: [10:58:41] RES: 
101: [10:58:41] substance Substance_310925001_310950000-021442.sdf
101: [10:58:41] CCOCO[N+](=O)[O-]
101: [10:58:41] CCOCO[N+](=O)[O-]
101: [10:58:41] RES: 
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] testCheckAtom
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] 
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] testStereo
101: [10:58:41] 0 : COC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
101: [10:58:41] FLAGS:
101: [10:58:41] 1 : OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H]2[C@@H]1c3c(O)c(OC)c(O)cc3C(=O)O2
101: [10:58:41] FLAGS:
101: [10:58:41] 2 : OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)1
101: [10:58:41] FLAGS:
101: [10:58:41] 3 : OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H]2[C@@H]1c3c(O)c(OC)c(O)cc3C(=O)O2
101: [10:58:41] FLAGS:
101: [10:58:41] substance_310975001:
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: chiral flag, no stereocenter
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] FLAGS: 
101: [10:58:41] substance 0
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] ref: STEREO_ERROR
101: [10:58:41] RES: 
101: [10:58:41] -------
101: [10:58:41] substance 1
101: [10:58:41] [#9]-[#6](-[#35])(-[#17])-[#6]
101: [10:58:41] [#9]-[#6](-[#35])(-[#17])-[#6]
101: [10:58:41] ref: EITHER_WARNING,DUBIOUS_STEREO_REMOVED
101: [10:58:41] RES: 
101: [10:58:41] -------
101: [10:58:41] substance 2
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] ref: 
101: [10:58:41] RES: 
101: [10:58:41] -------
101: [10:58:41] substance 3
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] ref: EITHER_WARNING,DUBIOUS_STEREO_REMOVED
101: [10:58:41] RES: 
101: [10:58:41] -------
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] checking nitro groups
101: flags 0
101: [10:58:41] -------------------------------------
101: [10:58:41] testSpecificOrder
101: [10:58:41] 0 : FC(F)O
101: [10:58:41] 
101: [10:58:41] 1 : OC(F)F
101: [10:58:41] 
101: [10:58:41] -------------------------------------
101: [10:58:41] testTransformAtoms
101: [10:58:41] 0 : FC=C(F)O
101: [10:58:41] OC(F)CF
101: [10:58:41] TAUTOMER_TRANSFORMED
101: [10:58:41] -------------------------------------
101: [10:58:41] testTransformAtoms
101: [10:58:41] 0 : C(=O)C
101: [10:58:41] before: CC=O
101: [10:58:41] Replace atom '' idx=0 AA: C(-C)(=O) with AAPair i=147 C -> C
101: [10:58:41] CCO
101: [10:58:41] * CheckAtom idx=0, C neighbours=2, O, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=0 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=1, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=1 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=2, C neighbours=1, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si,Ge,Sn,Pb,N,P,As,O,S,Se,Te,F,Cl,Br,I)
101: [10:58:41] AAMatch idx=2 aa_idx=12 ret TRUE !
101: [10:58:41] after:  CCO
101: [10:58:41] TRANSFORMED
101: [10:58:41] 1 : FC=CO
101: [10:58:41] before: OC=CF
101: [10:58:41] Replace atom '' idx=1 AA: C(=C)(-F) with AAPair i=148 C -> C
101: [10:58:41] OCC=F
101: [10:58:41] * CheckAtom idx=0, F neighbours=1, C
101: [10:58:41] UNMATCHED atom idx=0 F status=0 nmatch=0
101: atom '' idx=0 AA: F(=C)
101: [10:58:41] atom '' idx=0 AA: F(=C)
101: [10:58:41] * CheckAtom idx=1, C neighbours=2, F, C
101: [10:58:41] UNMATCHED ring state RING of atom idx=1 C status=0
101: [10:58:41] UNMATCHED atom idx=1 C status=0 nmatch=0
101: atom '' idx=1 AA: C(-C)(=F)
101: [10:58:41] atom '' idx=1 AA: C(-C)(=F)
101: [10:58:41] * CheckAtom idx=2, C neighbours=2, C, O
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=2 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=3, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=3 aa_idx=28 ret TRUE !
101: [10:58:41] after:  OCC=F
101: [10:58:41] ATOM_CHECK_FAILED,TRANSFORMED
101: [10:58:41] -------------------------------------
101: [10:58:41] testAugmentedAtomTranslationsToAtomListQuery
101: [10:58:41] Replace atom '' idx=0 AA: C(-C)(=O) with AAPair i=147 C -> C
101: [10:58:41] CCO
101: [10:58:41] * CheckAtom idx=0, C neighbours=2, O, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=0 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=1, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=1 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=2, C neighbours=1, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si,Ge,Sn,Pb,N,P,As,O,S,Se,Te,F,Cl,Br,I)
101: [10:58:41] AAMatch idx=2 aa_idx=12 ret TRUE !
101: [10:58:41] FLAGs: TRANSFORMED
101: [10:58:41] RES  : [#6](-[#8,#7,#16,#20])-[#6]
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] testCarboxylicAcids. Substance_310925001_310950000-000075-000075
101: [10:58:41] C=CC(C1=CC(=O)C=CC1=O)c1ccccc1.Cc1ccc(Cl)c(Nc2ccccc2C(=O)[O-])c1Cl.[Na+]
101: [10:58:41] Replace atom '310925076' idx=21 AA: C(-C)(-O-1)(=O) with AAPair i=88 C -> C
101: [10:58:41] C=CC(C1=CC(=O)C=CC1=O)c1ccccc1.Cc1ccc(Cl)c(Nc2ccccc2C(=O)O)c1Cl.[Na+]
101: [10:58:41] 310925076 removed fragment i=1 with 1 atoms
101: [10:58:41] 310925076 removed fragment i=2 with 17 atoms
101: [10:58:41] Striped SmallFragmentsCc1ccc(Cl)c(Nc2ccccc2C(=O)O)c1Cl
101: [10:58:41] tautomerizing with rule 0
101: [10:58:41] * CheckAtom idx=0, Cl neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=0 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=1, Cl neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=1 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=2, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=2 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=3, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O(=B,C,Si,Sn,Ge,N,P,As,Sb,S,Se,Cl,Br,I)
101: [10:58:41] AAMatch idx=3 aa_idx=33 ret TRUE !
101: [10:58:41] * CheckAtom idx=4, N neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE N(-C,Si,N,P,O,S)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,F,Cl,Br,I,H,D,T)
101: [10:58:41] AAMatch idx=4 aa_idx=140 ret TRUE !
101: [10:58:41] * CheckAtom idx=5, C neighbours=3, N, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=5 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=6, C neighbours=3, Cl, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=6 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=7, C neighbours=3, N, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=7 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=8, C neighbours=3, Cl, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=8 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=9, C neighbours=3, C, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=9 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=10, C neighbours=3, C, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=10 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=11, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=11 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=12, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=12 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=13, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=13 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=14, C neighbours=3, O, O, C
101: [10:58:41] RecMatch ret TRUE C(=O,S,Se)(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,Se,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=14 aa_idx=322 ret TRUE !
101: [10:58:41] * CheckAtom idx=15, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=15 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=16, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=16 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=17, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=17 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=18, C neighbours=1, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si,Ge,Sn,Pb,N,P,As,O,S,Se,Te,F,Cl,Br,I)
101: [10:58:41] AAMatch idx=18 aa_idx=12 ret TRUE !
101: [10:58:41] C=CC(C1=CC(=O)C=CC1=O)c1ccccc1.Cc1ccc(Cl)c(Nc2ccccc2C(=O)[O-])c1Cl.[Na+]
101: [10:58:41] Cc1ccc(Cl)c(Nc2ccccc2C(=O)O)c1Cl
101: [10:58:41] RES: TRANSFORMED,FRAGMENTS_FOUND
101: [10:58:41] 	done
101: [10:58:41] *******************************************************
101/130 Test #101: testStructChecker ..................   Passed    0.08 sec
test 102
        Start 102: pyStructChecker

102: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/rough_test.py"
102: Test timeout computed to be: 9.99988e+06
102: ..
102: ----------------------------------------------------------------------
102: Ran 2 tests in 0.011s
102: 
102: OK
102/130 Test #102: pyStructChecker ....................   Passed    0.14 sec
test 103
        Start 103: testReducedGraphs

103: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/testReducedGraphs
103: Test timeout computed to be: 9.99988e+06
103: [10:58:41] testing basics
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103: 
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103: 
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103: 
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103: 
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103: 
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103: 
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103: 
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: [10:58:41] done
103: [10:58:41] testing basics2
103: [10:58:41] done
103/130 Test #103: testReducedGraphs ..................   Passed    0.05 sec
test 104
        Start 104: pyReducedGraphs

104: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py"
104: Test timeout computed to be: 9.99988e+06
104: ....
104: ----------------------------------------------------------------------
104: Ran 4 tests in 0.010s
104: 
104: OK
104/130 Test #104: pyReducedGraphs ....................   Passed    0.12 sec
test 105
        Start 105: trajectoryTest

105: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/trajectoryTest
105: Test timeout computed to be: 9.99988e+06
105: [10:58:41] ***********************************************************
105: [10:58:41] Testing Trajectory
105: [10:58:41] 
105: 
105: ****
105: Pre-condition Violation
105: d_pos must not be NULL
105: Violation occurred on line 23 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: d_pos
105: ****
105: 
105: [10:58:41] 
105: 
105: ****
105: Pre-condition Violation
105: d_trajectory must not be NULL
105: Violation occurred on line 24 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: d_trajectory
105: ****
105: 
105: [10:58:41] -------------------------------------
105: [10:58:41] testTrajectory2D
105: [10:58:41] 
105: 
105: ****
105: Range Error
105: snapshotNum
105: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: 5 < 5
105: ****
105: 
105: [10:58:41] 
105: 
105: ****
105: Range Error
105: pointNum
105: Violation occurred on line 27 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: 10 < 10
105: ****
105: 
105: [10:58:41] done
105: [10:58:41] -------------------------------------
105: [10:58:41] testTrajectory3D
105: [10:58:41] 
105: 
105: ****
105: Range Error
105: snapshotNum
105: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: 5 < 5
105: ****
105: 
105: [10:58:41] 
105: 
105: ****
105: Pre-condition Violation
105: d_dimension must be == 2
105: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: d_trajectory->dimension() == 2
105: ****
105: 
105: [10:58:41] 
105: 
105: ****
105: Pre-condition Violation
105: d_dimension must be == 2
105: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: d_trajectory->dimension() == 2
105: ****
105: 
105: [10:58:41] done
105: [10:58:41] -------------------------------------
105: [10:58:41] testReadAmber
105: [10:58:41] 
105: 
105: ****
105: Pre-condition Violation
105: The trajectory must have dimension == 3
105: Violation occurred on line 106 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: traj.dimension() == 3
105: ****
105: 
105: [10:58:41] Error while reading file: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/test_data/water_coords_bad.trx
105: [10:58:41] Premature end of file: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/test_data/water_coords_bad2.trx
105: [10:58:41] done
105: [10:58:41] -------------------------------------
105: [10:58:41] testReadGromos
105: [10:58:41] 
105: 
105: ****
105: Pre-condition Violation
105: The trajectory must have dimension == 3
105: Violation occurred on line 147 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: traj.dimension() == 3
105: ****
105: 
105: [10:58:41] Wrong number of coordinates
105: [10:58:41] Wrong number of coordinates
105: [10:58:41] done
105: [10:58:41] -----------------------
105: [10:58:41] Testing adding conformers from a trajectory
105: [10:58:42] 
105: 
105: ****
105: Range Error
105: snapshotNum
105: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: 0 < 0
105: ****
105: 
105: [10:58:42] snapshotNum
105: [10:58:42] -------------------------------------
105: [10:58:42] testAddConformersFromAmberTrajectory
105: [10:58:42] 
105: 
105: ****
105: Pre-condition Violation
105: from must be < size()
105: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: from < static_cast<int>(size())
105: ****
105: 
105: [10:58:42] done
105: [10:58:42] -------------------------------------
105: [10:58:42] testAddConformersFromGromosTrajectory
105: [10:58:42] 
105: 
105: ****
105: Pre-condition Violation
105: from must be < size()
105: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: from < static_cast<int>(size())
105: ****
105: 
105: [10:58:42] done
105/130 Test #105: trajectoryTest .....................   Passed    0.23 sec
test 106
        Start 106: substructLibraryTest

106: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest
106: Test timeout computed to be: 9.99988e+06
106: [10:58:42] -------------------------------------
106: [10:58:42]     Test1
106: [10:58:42]   done
106: [10:58:42] -------------------------------------
106: [10:58:42]     Test2
106: [10:58:42]   done
106: [10:58:42] -------------------------------------
106: [10:58:42]     Test3 (stereo options)
106: [10:58:42]     Done (stereo options)
106: [10:58:42] -------------------------------------
106: [10:58:42]     Test4 (trusted smiles)
106: [10:58:42]     Done (stereo options)
106/130 Test #106: substructLibraryTest ...............   Passed    0.25 sec
test 107
        Start 107: pySubstructLibrary

107: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/rough_test.py"
107: Test timeout computed to be: 9.99988e+06
107: .......
107: ----------------------------------------------------------------------
107: Ran 7 tests in 1.111s
107: 
107: OK
107/130 Test #107: pySubstructLibrary .................   Passed    1.32 sec
test 108
        Start 108: testRGroupDecomp

108: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp
108: Test timeout computed to be: 9.99988e+06
108: [10:58:43] ********************************************************
108: [10:58:43] Testing R-Group Decomposition 
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp symmetry matching
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp rgroup only matching
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp ring matching
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp full ring dummy core
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp full ring dummy core
108: [10:58:43] ********************************************************
108: [10:58:43] test multi core
108: [10:58:43] ********************************************************
108: [10:58:43] test Github #1550: Kekulization error from R-group decomposition
108: [10:58:43] ********************************************************
108: [10:58:43] test remove sidechain Hs
108: [10:58:43] ********************************************************
108: [10:58:43] test preferring grouping non hydrogens over hydrogens if possible
108: [10:58:43] ********************************************************
108/130 Test #108: testRGroupDecomp ...................   Passed    0.13 sec
test 109
        Start 109: pyRGroupDecomposition

109: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py"
109: Test timeout computed to be: 9.99988e+06
109: ...
109: ----------------------------------------------------------------------
109: Ran 3 tests in 0.101s
109: 
109: OK
109/130 Test #109: pyRGroupDecomposition ..............   Passed    0.22 sec
test 110
        Start 110: testSLNParse

110: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/testSLNParse
110: Test timeout computed to be: 9.99988e+06
110: [10:58:44] -------------------------------------
110: [10:58:44] Test1 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test2: bond orders 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test3: atom properties 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test4: hydrogen handling 
110: [10:58:44] 	done
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH4[I=13]
110: [10:58:44] -------------------------------------
110: [10:58:44] Test5: basic queries 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test6: ring queries 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test7: qualified queries 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test8: more complex atom properties 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test9: recursive SLNs 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test10: nested recursive SLNs 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test12: bond queries and properties 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test13: ring closure details 
110: [10:58:44] SLN Parser error: Atom ID 1 appears *after* its ring closure.
110: [10:58:44] SLN Parser error: Ring closure 1 does not have a corresponding opener.
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test14: error catching 
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH2(C@1H2)CH2(CH2CH2C[1]H2)
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test15: CTAB properties 
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test16: simple macro atoms 
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH2(CH2[1])CH2(CH2CH2CH2@1)
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test1 
110: [10:58:44] -------------------------------------
110: [10:58:44] Test issue277: parse error with & 
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH4	fff
110: [10:58:44] SLN Parse Error: syntax error while parsing: C[charge=+1] 	foo
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] Test issue278: handling of 'not' and 'is' queries on Any
110: [10:58:44] 	done
110: [10:58:44] Query property 'is' ignored on non-query atom
110: [10:58:44] Query property 'is' ignored on non-query atom
110/130 Test #110: testSLNParse .......................   Passed    0.07 sec
test 111
        Start 111: pySLNParse

111: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/testSLN.py"
111: Test timeout computed to be: 9.99988e+06
111: ..
111: ----------------------------------------------------------------------
111: Ran 2 tests in 0.007s
111: 
111: OK
111/130 Test #111: pySLNParse .........................   Passed    0.12 sec
test 112
        Start 112: pyGraphMolWrap

112: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rough_test.py"
112: Test timeout computed to be: 9.99988e+06
112: {'int': 1000, 'double': 10000.123}
112: ..............[10:58:44] SMARTS Parse Error: syntax error for input: 'fiib'
112: ....[10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] Spurious data before the first property will be ignored
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] Spurious data before the first property will be ignored
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: .[10:58:44] SMILES Parse Error: syntax error for input: 'fail'
112: [10:58:44] ERROR: Smiles parse error on line 2
112: [10:58:44] ERROR: Cannot create molecule from : 'fail'
112: >>> This may result in an infinite loop.  It should finish almost instantly
112: <<< OK, it finished.
112: ............[10:58:44] Explicit valence for atom # 1 C, 5, is greater than permitted
112: ............[10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] 
112: 
112: ****
112: Range Error
112: idx
112: Violation occurred on line 149 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
112: Failed Expression: 12 < 6
112: ****
112: 
112: [10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] 
112: 
112: ****
112: Range Error
112: idx
112: Violation occurred on line 149 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
112: Failed Expression: 12 < 6
112: ****
112: 
112: ...............[10:58:44] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count.
112: [10:58:44] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count.
112: ..............[10:58:44] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
112: 
112: [10:58:44] Explicit valence for atom # 1 C, 5, is greater than permitted
112: ...........................................[10:58:50] 
112: 
112: ****
112: Pre-condition Violation
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: ****
112: 
112: [10:58:50] 
112: 
112: ****
112: Pre-condition Violation
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: ****
112: 
112: [10:58:50] 
112: 
112: ****
112: Pre-condition Violation
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: ****
112: 
112: [10:58:50] 
112: 
112: ****
112: Pre-condition Violation
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: ****
112: 
112: [10:58:50] 
112: 
112: ****
112: Pre-condition Violation
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: ****
112: 
112: .....[10:58:50] 
112: 
112: ****
112: Range Error
112: atomIdx1
112: Violation occurred on line 274 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
112: Failed Expression: 0 < 0
112: ****
112: 
112: ......[10:58:50] 
112: 
112: ****
112: Range Error
112: idx
112: Violation occurred on line 149 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
112: Failed Expression: 3 < 1
112: ****
112: 
112: .[10:58:50] 1
112: [10:58:50] 2
112: [10:58:50] 1
112: [10:58:50] 2
112: ............[10:58:50] SMILES Parse Error: syntax error for input: 'CCC |$foo;;bar$| ourname'
112: RDKit ERROR: [10:58:50] SMILES Parse Error: syntax error for input: 'CCC |$foo;;bar$| ourname'
112: ......
112: ----------------------------------------------------------------------
112: Ran 145 tests in 6.102s
112: 
112: OK
112/130 Test #112: pyGraphMolWrap .....................   Passed    6.27 sec
test 113
        Start 113: pyTestConformerWrap

113: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/testConformer.py"
113: Test timeout computed to be: 9.99988e+06
113: ......
113: ----------------------------------------------------------------------
113: Ran 6 tests in 0.009s
113: 
113: OK
113/130 Test #113: pyTestConformerWrap ................   Passed    0.12 sec
test 114
        Start 114: pyTestTrajectory

114: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/testTrajectory.py"
114: Test timeout computed to be: 9.99988e+06
114: Testing Trajectory wrapper
114: [10:58:50] 
114: 
114: ****
114: Pre-condition Violation
114: from must be < size()
114: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: from < static_cast<int>(size())
114: ****
114: 
114: .[10:58:50] 
114: 
114: ****
114: Pre-condition Violation
114: from must be < size()
114: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: from < static_cast<int>(size())
114: ****
114: 
114: .[10:58:50] 
114: 
114: ****
114: Range Error
114: snapshotNum
114: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: 0 < 0
114: ****
114: 
114: .[10:58:50] 
114: 
114: ****
114: Pre-condition Violation
114: The trajectory must have dimension == 3
114: Violation occurred on line 106 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: traj.dimension() == 3
114: ****
114: 
114: ..[10:58:50] 
114: 
114: ****
114: Pre-condition Violation
114: The trajectory must have dimension == 3
114: Violation occurred on line 147 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: traj.dimension() == 3
114: ****
114: 
114: .[10:58:50] 
114: 
114: ****
114: Pre-condition Violation
114: d_pos must not be NULL
114: Violation occurred on line 23 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: d_pos
114: ****
114: 
114: [10:58:50] 
114: 
114: ****
114: Pre-condition Violation
114: d_trajectory must not be NULL
114: Violation occurred on line 24 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: d_trajectory
114: ****
114: 
114: .[10:58:50] 
114: 
114: ****
114: Range Error
114: snapshotNum
114: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: 5 < 5
114: ****
114: 
114: [10:58:50] 
114: 
114: ****
114: Range Error
114: pointNum
114: Violation occurred on line 27 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: 10 < 10
114: ****
114: 
114: .[10:58:50] 
114: 
114: ****
114: Range Error
114: snapshotNum
114: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: 5 < 5
114: ****
114: 
114: [10:58:50] 
114: 
114: ****
114: Pre-condition Violation
114: d_dimension must be == 2
114: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: d_trajectory->dimension() == 2
114: ****
114: 
114: [10:58:50] 
114: 
114: ****
114: Pre-condition Violation
114: d_dimension must be == 2
114: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: d_trajectory->dimension() == 2
114: ****
114: 
114: .
114: ----------------------------------------------------------------------
114: Ran 9 tests in 0.197s
114: 
114: OK
114/130 Test #114: pyTestTrajectory ...................   Passed    0.33 sec
test 115
        Start 115: pyTestThreads

115: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/testThreads.py"
115: Test timeout computed to be: 9.99988e+06
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 7:: My dog has fleas
115: 
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115/130 Test #115: pyTestThreads ......................   Passed    0.17 sec
test 116
        Start 116: testQuery

116: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query/testQuery
116: Test timeout computed to be: 9.99988e+06
116: Query
116: Query2
116: Equality
116: Greater
116: GreaterEqual
116: Less
116: LessEqual
116: Open Range
116: Closed Range
116: Float
116: With Tolerance
116: Set
116: And
116: Or
116: XOr
116: pointer and copy foo
116: Set2
116/130 Test #116: testQuery ..........................   Passed    0.07 sec
test 117
        Start 117: testMatCalc

117: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/testMatCalc
117: Test timeout computed to be: 9.99988e+06
117: 1.68022e+08
117: 1.73149e+08
117: 1.05549e+08
117: 7.20603e+07
117: 1.41535e+08
117: 1.08592e+08
117: 1.11334e+08
117: 2.05553e+08
117: 1.54962e+08
117: 8.08231e+07
117: 5.61421e+07
117: 1.28874e+08
117: 1.59011e+08
117: 8.69902e+07
117: 1.31367e+08
117: 2.27389e+08
117: 1.60289e+08
117: 7.79813e+07
117: 1.61001e+08
117: 2.07599e+08
117: 2.24432e+08
117: 1.39725e+08
117: 2.42614e+08
117: 1.77578e+08
117: 1.05908e+08
117: 9.06742e+07
117: 1.8087e+08
117: 1.98182e+08
117: 2.03052e+08
117: 1.7673e+08
117: 9.32798e+07
117: 1.37969e+08
117: 1.83778e+08
117: 2.1228e+08
117: 5.06157e+07
117: 1.566e+08
117: 2.37142e+08
117: 1.49345e+08
117: 7.05819e+07
117: 1.71633e+08
117: 1.96817e+08
117: 2.18246e+08
117: 9.49496e+07
117: 2.25618e+08
117: 1.30219e+08
117/130 Test #117: testMatCalc ........................   Passed    0.02 sec
test 118
        Start 118: pyMatCalc

118: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py"
118: Test timeout computed to be: 9.99988e+06
118: .....
118: ----------------------------------------------------------------------
118: Ran 5 tests in 0.300s
118: 
118: OK
118/130 Test #118: pyMatCalc ..........................   Passed    0.40 sec
test 119
        Start 119: testSimDivPickers

119: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/testSimDivPickers
119: Test timeout computed to be: 9.99988e+06
119: [10:58:51] -------------------------------------
119: [10:58:51] Testing github issue 1421: MaxMinPicker picking non-existent element.
119: [10:58:51] Done
119/130 Test #119: testSimDivPickers ..................   Passed    0.02 sec
test 120
        Start 120: pySimDivPickers

120: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/testPickers.py"
120: Test timeout computed to be: 9.99988e+06
120: [10:58:51] the useCache argument is deprecated and ignored
120: ..[10:58:51] the useCache argument is deprecated and ignored
120: [10:58:51] the useCache argument is deprecated and ignored
120: .[10:58:51] the useCache argument is deprecated and ignored
120: ......
120: ----------------------------------------------------------------------
120: Ran 9 tests in 0.189s
120: 
120: OK
120/130 Test #120: pySimDivPickers ....................   Passed    0.30 sec
test 121
        Start 121: pyRanker

121: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap/testRanker.py"
121: Test timeout computed to be: 9.99988e+06
121: ..[10:58:52] 
121: 
121: ****
121: Invariant Violation
121: Can't rank more bits than the ensemble size
121: Violation occurred on line 158 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/InfoBitRanker.cpp
121: Failed Expression: num <= dp_maskBits->getNumOnBits()
121: ****
121: 
121: ...
121: ----------------------------------------------------------------------
121: Ran 5 tests in 0.026s
121: 
121: OK
121/130 Test #121: pyRanker ...........................   Passed    0.12 sec
test 122
        Start 122: testChemicalFeatures

122: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/testChemicalFeatures
122: Test timeout computed to be: 9.99988e+06
122: -----------------------------------------
122: Test1
122: Done
122/130 Test #122: testChemicalFeatures ...............   Passed    0.03 sec
test 123
        Start 123: pyFeatures

123: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap/testFeatures.py"
123: Test timeout computed to be: 9.99988e+06
123: ..
123: ----------------------------------------------------------------------
123: Ran 2 tests in 0.009s
123: Testing ChemicalFeatures Wrapper code:
123: 
123: OK
123/130 Test #123: pyFeatures .........................   Passed    0.12 sec
test 124
        Start 124: pythonTestDbCLI

124: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Projects/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Projects"
124: Test timeout computed to be: 9.99988e+06
124: [10:58:52] INFO: Reading molecules and constructing molecular database.
124: [10:58:52] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:58:52] INFO:   Processing 10 molecules
124: [10:58:52] INFO: Generating fingerprints and descriptors:
124: [10:58:52] INFO: Finished.
124: [10:58:52] INFO: Reading molecules and constructing molecular database.
124: [10:58:52] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:58:52] INFO:   Processing 163 molecules
124: [10:58:52] INFO:   done 100
124: [10:58:52] INFO: Generating fingerprints and descriptors:
124: [10:58:55] INFO: Finished.
124: [10:58:55] INFO: Reading query molecules and generating fingerprints
124: [10:58:55] INFO: Finding Neighbors
124: [10:58:56] INFO: The search took 0.1 seconds
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Reading query molecules and generating fingerprints
124: [10:58:56] INFO: Finding Neighbors
124: [10:58:56] INFO: The search took 0.1 seconds
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Reading query molecules and generating fingerprints
124: [10:58:56] INFO: Finding Neighbors
124: [10:58:56] INFO: The search took 0.1 seconds
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Doing property query
124: [10:58:56] INFO: Found 30 molecules matching the query
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Done!
124: [10:58:57] INFO: Doing property query
124: [10:58:57] INFO: Found 30 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO:    Fingerprint screenout rate: 112 of 163 (%68.71)
124: [10:58:57] INFO: Found 49 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO:    Fingerprint screenout rate: 112 of 163 (%68.71)
124: [10:58:57] INFO: Found 49 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO: Found 114 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO:    Fingerprint screenout rate: 23 of 30 (%76.67)
124: [10:58:57] INFO: Found 5 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO: Found 25 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Reading query molecules and generating fingerprints
124: [10:58:59] INFO: Finding Neighbors
124: [10:59:00] INFO: The search took 0.4 seconds
124: [10:59:00] INFO: Creating output
124: [10:59:00] INFO: Done!
124: [10:59:00] INFO: Reading query molecules and generating fingerprints
124: [10:59:00] INFO: Finding Neighbors
124: [10:59:00] INFO: The search took 0.0 seconds
124: [10:59:00] INFO: Creating output
124: [10:59:00] INFO: Done!
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO:   Processing 10 molecules
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO:   Processing 10 molecules
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO:   Processing 10 molecules
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Finished.
124: [10:59:01] INFO: Reading molecules and constructing molecular database.
124: [10:59:01] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:01] INFO: Generating fingerprints and descriptors:
124: [10:59:01] INFO: Finished.
124: [10:59:01] INFO: Guessing that mol format is 'sdf'. Use --molFormat argument if this is wrong.
124: [10:59:01] INFO: Reading molecules and constructing molecular database.
124: [10:59:01] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:01] INFO:   Processing 163 molecules
124: [10:59:01] INFO:   done 100
124: [10:59:01] INFO: Generating fingerprints and descriptors:
124: [10:59:01] INFO: Finished.
124: [10:59:01] INFO: Reading query molecules and generating fingerprints
124: [10:59:01] INFO: Finding Neighbors
124: [10:59:02] INFO: The search took 0.1 seconds
124: [10:59:02] INFO: Creating output
124: [10:59:02] INFO: Done!
124: [10:59:02] INFO: Reading molecules and constructing molecular database.
124: [10:59:02] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:02] INFO:   Processing 10 molecules
124: [10:59:02] INFO: Generating fingerprints and descriptors:
124: [10:59:02] INFO: Finished.
124: [10:59:02] INFO: Reading molecules and constructing molecular database.
124: [10:59:02] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:02] INFO:   Processing 10 molecules
124: [10:59:02] INFO: Generating fingerprints and descriptors:
124: [10:59:02] INFO: Finished.
124: ............
124: ----------------------------------------------------------------------
124: Ran 12 tests in 10.308s
124: 
124: OK
124/130 Test #124: pythonTestDbCLI ....................   Passed   10.38 sec
test 125
        Start 125: pythonTestDirML

125: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/ML/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/ML"
125: Test timeout computed to be: 9.99988e+06
125: .......
125: ----------------------------------------------------------------------
125: Ran 7 tests in 0.502s
125: 
125: OK
125: ............
125: ----------------------------------------------------------------------
125: Ran 12 tests in 0.092s
125: 
125: OK
125: .
125: ----------------------------------------------------------------------
125: Ran 1 test in 0.063s
125: 
125: OK
125: ...
125: ----------------------------------------------------------------------
125: Ran 3 tests in 0.001s
125: 
125: OK
125: ........
125: ----------------------------------------------------------------------
125: Ran 8 tests in 0.000s
125: 
125: OK
125: ....
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.351s
125: 
125: OK
125: .....
125: ----------------------------------------------------------------------
125: Ran 5 tests in 0.002s
125: 
125: OK
125: .........
125: ----------------------------------------------------------------------
125: Ran 9 tests in 0.015s
125: 
125: OK
125: ............
125: ----------------------------------------------------------------------
125: Ran 12 tests in 0.002s
125: 
125: OK
125: .....
125: ----------------------------------------------------------------------
125: Ran 5 tests in 0.168s
125: 
125: OK
125: .
125: ----------------------------------------------------------------------
125: Ran 1 test in 0.000s
125: 
125: OK
125: ......
125: ----------------------------------------------------------------------
125: Ran 6 tests in 0.002s
125: 
125: OK
125: ....
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.350s
125: 
125: OK
125: ......
125: ----------------------------------------------------------------------
125: Ran 6 tests in 0.015s
125: 
125: OK
125: ..
125: ----------------------------------------------------------------------
125: Ran 2 tests in 0.098s
125: 
125: OK
125: ..........
125: ----------------------------------------------------------------------
125: Ran 10 tests in 0.029s
125: 
125: OK
125: .....
125: ----------------------------------------------------------------------
125: Ran 5 tests in 0.064s
125: 
125: OK
125: ..
125: ----------------------------------------------------------------------
125: Ran 2 tests in 0.002s
125: 
125: OK
125: ....
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.007s
125: 
125: OK
125: ...
125: ----------------------------------------------------------------------
125: Ran 3 tests in 0.032s
125: 
125: OK
125: ...
125: ----------------------------------------------------------------------
125: Ran 3 tests in 0.236s
125: 
125: OK
125: ......
125: ----------------------------------------------------------------------
125: Ran 6 tests in 0.366s
125: 
125: OK
125: .......
125: ----------------------------------------------------------------------
125: Ran 7 tests in 0.207s
125: 
125: OK
125: ....
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.011s
125: 
125: OK
125: .....
125: ----------------------------------------------------------------------
125: Ran 5 tests in 2.288s
125: 
125: OK
125: ....
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.002s
125: 
125: OK
125: ....
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.000s
125: 
125: OK
125/130 Test #125: pythonTestDirML ....................   Passed    7.93 sec
test 126
        Start 126: pythonTestDirDataStructs

126: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/DataStructs/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/DataStructs"
126: Test timeout computed to be: 9.99988e+06
126: .......
126: ----------------------------------------------------------------------
126: Ran 7 tests in 0.014s
126: 
126: OK
126: ..................................
126: ----------------------------------------------------------------------
126: Ran 34 tests in 0.003s
126: 
126: OK
126: .....
126: ----------------------------------------------------------------------
126: Ran 5 tests in 0.018s
126: 
126: OK
126: .......
126: ----------------------------------------------------------------------
126: Ran 7 tests in 0.001s
126: 
126: OK
126/130 Test #126: pythonTestDirDataStructs ...........   Passed    0.49 sec
test 127
        Start 127: pythonTestDirDbase

127: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Dbase/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Dbase"
127: Test timeout computed to be: 9.99988e+06
127: ..
127: ----------------------------------------------------------------------
127: Ran 2 tests in 0.009s
127: 
127: OK
127: ...........
127: ----------------------------------------------------------------------
127: Ran 11 tests in 0.012s
127: 
127: OK
127: .
127: ----------------------------------------------------------------------
127: Ran 1 test in 0.001s
127: 
127: OK
127: ...............
127: ----------------------------------------------------------------------
127: Ran 15 tests in 0.021s
127: 
127: OK
127: ......
127: ----------------------------------------------------------------------
127: Ran 6 tests in 0.004s
127: 
127: OK
127/130 Test #127: pythonTestDirDbase .................   Passed    0.25 sec
test 128
        Start 128: pythonTestDirSimDivFilters

128: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/SimDivFilters/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/SimDivFilters"
128: Test timeout computed to be: 9.99988e+06
128/130 Test #128: pythonTestDirSimDivFilters .........   Passed    0.17 sec
test 129
        Start 129: pythonTestDirVLib

129: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/VLib/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/VLib"
129: Test timeout computed to be: 9.99988e+06
129: .............
129: ----------------------------------------------------------------------
129: Ran 13 tests in 0.008s
129: 
129: OK
129: ...........
129: ----------------------------------------------------------------------
129: Ran 11 tests in 0.038s
129: 
129: OK
129/130 Test #129: pythonTestDirVLib ..................   Passed    0.30 sec
test 130
        Start 130: pythonTestDirChem

130: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem"
130: Test timeout computed to be: 9.99988e+06
130: ....
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.040s
130: 
130: OK
130: ......
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.035s
130: 
130: OK
130: ....[10:59:12] 
130: 
130: ****
130: Pre-condition Violation
130: valence not defined for atoms not associated with molecules
130: Violation occurred on line 267 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
130: Failed Expression: dp_mol
130: ****
130: 
130: .
130: ----------------------------------------------------------------------
130: Ran 5 tests in 0.008s
130: 
130: OK
130: ....
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.007s
130: 
130: OK
130: ..
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.012s
130: 
130: OK
130: ......................
130: ----------------------------------------------------------------------
130: Ran 22 tests in 0.028s
130: 
130: OK
130: .....s.................ss
130: ----------------------------------------------------------------------
130: Ran 25 tests in 0.129s
130: 
130: OK (skipped=3)
130: ..s
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.137s
130: 
130: OK (skipped=1)
130: ...................................
130: ----------------------------------------------------------------------
130: Ran 35 tests in 1.187s
130: 
130: OK
130: ....
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.020s
130: 
130: OK
130: .
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.008s
130: 
130: OK
130: ......
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.028s
130: 
130: OK
130: ...
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.045s
130: 
130: OK
130: .ss.ss.......
130: ----------------------------------------------------------------------
130: Ran 13 tests in 0.926s
130: 
130: OK (skipped=4)
130: ...........[10:59:26] WARNING: More than one matching pattern found - picking one
130: [10:59:26] WARNING: More than one matching pattern found - picking one
130: .[10:59:26] WARNING: More than one matching pattern found - picking one
130: ..
130: ----------------------------------------------------------------------
130: Ran 14 tests in 10.213s
130: 
130: OK
130: ........
130: ----------------------------------------------------------------------
130: Ran 8 tests in 0.290s
130: 
130: OK
130: ...........
130: ----------------------------------------------------------------------
130: Ran 11 tests in 3.575s
130: 
130: OK
130: [10:59:30] WARNING: Omitted undefined stereo
130: [10:59:30] WARNING: Proton(s) added/removed
130: .....
130: ----------------------------------------------------------------------
130: Ran 5 tests in 9.020s
130: 
130: OK
130: 
130: InChI write Summary: 1164 identical, 0 suffix variance, 17 reasonable
130: 
130: InChI read Summary: 621 identical, 0 variance, 560 reasonable variance
130: ....
130: ----------------------------------------------------------------------
130: Ran 4 tests in 1.354s
130: 
130: OK
130: ......
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.370s
130: 
130: OK
130: ...............s........
130: ----------------------------------------------------------------------
130: Ran 24 tests in 1.390s
130: 
130: OK (skipped=1)
130: ..
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.000s
130: 
130: OK
130: UnitTestDocTestsChem.py:5: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead.
130:   from rdkit.Chem import MCS, FragmentMatcher, MACCSkeys, Descriptors, TemplateAlign
130: ./builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/MCS.py:1: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead.
130:   # This work was funded by Roche and generously donated to the free
130: .............[10:59:50] WARNING: More than one matching pattern found - picking one
130: [10:59:50] WARNING: More than one matching pattern found - picking one
130: .........
130: ----------------------------------------------------------------------
130: Ran 23 tests in 5.287s
130: 
130: OK
130: ..
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.065s
130: 
130: OK
130: ..s...
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.810s
130: 
130: OK (skipped=1)
130: ..................
130: ----------------------------------------------------------------------
130: Ran 18 tests in 0.814s
130: 
130: OK
130: ...
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.090s
130: 
130: OK
130: ........
130: ----------------------------------------------------------------------
130: Ran 8 tests in 0.027s
130: 
130: OK
130: ..
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.015s
130: 
130: OK
130: ..
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.012s
130: 
130: OK
130: .
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.078s
130: 
130: OK
130: ........
130: ----------------------------------------------------------------------
130: Ran 8 tests in 0.001s
130: 
130: OK
130: ...
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.004s
130: 
130: OK
130: ...
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.001s
130: 
130: OK
130: ....
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.003s
130: 
130: OK
130: ......
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.010s
130: 
130: OK
130: ....
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.014s
130: 
130: OK
130: ....
130: ----------------------------------------------------------------------
130: Ran 4 tests in 2.923s
130: 
130: OK
130: ..........
130: ----------------------------------------------------------------------
130: Ran 10 tests in 0.042s
130: 
130: OK
130: .
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.000s
130: 
130: OK
130: ..........
130: ----------------------------------------------------------------------
130: Ran 10 tests in 0.004s
130: 
130: OK
130: .....
130: ----------------------------------------------------------------------
130: Ran 5 tests in 0.065s
130: 
130: OK
130: .....................
130: ----------------------------------------------------------------------
130: Ran 21 tests in 3.723s
130: 
130: OK
130: .
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.000s
130: 
130: OK
130: ...[11:00:02] 
130: 
130: ****
130: Pre-condition Violation
130: molecule has no conformers
130: Violation occurred on line 37 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
130: Failed Expression: dp_mol->getNumConformers()
130: ****
130: 
130: .
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.019s
130: 
130: OK
130: ..
130: ----------------------------------------------------------------------
130: Ran 2 tests in 10.310s
130: 
130: OK
130: ..
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.085s
130: 
130: OK
130: ...
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.009s
130: 
130: OK
130: ....
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.017s
130: 
130: OK
130: ..........
130: ----------------------------------------------------------------------
130: Ran 10 tests in 0.295s
130: 
130: OK
130: sss...s..s.sss.
130: ----------------------------------------------------------------------
130: Ran 15 tests in 0.246s
130: 
130: OK (skipped=8)
130: Forcing use of Agg renderer
130: /usr/lib64/python2.7/site-packages/matplotlib/__init__.py:1005: UserWarning:  This call to matplotlib.use() has no effect
130: because the the backend has already been chosen;
130: matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
130: or matplotlib.backends is imported for the first time.
130: 
130:   warnings.warn(_use_error_msg)
130: ..
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.155s
130: 
130: OK
130: s
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.000s
130: 
130: OK (skipped=1)
130: ..........
130: ----------------------------------------------------------------------
130: Ran 10 tests in 0.471s
130: 
130: OK
130: ..[11:00:16] reaction has no reactants
130: [11:00:16] reaction has no products
130: [11:00:16] initialization failed
130: [11:00:16] reaction has no reactants
130: [11:00:16] reaction has no products
130: .
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.024s
130: 
130: OK
130/130 Test #130: pythonTestDirChem ..................   Passed   64.94 sec

The following tests passed:
	testInchi
	testDict
	testRDValue
	testDataStructs
	testFPB
	testMultiFPB
	pyBV
	pyDiscreteValueVect
	pySparseIntVect
	pyFPB
	testTransforms
	testGrid
	testPyGeometry
	testMatrices
	testAlignment
	pyAlignment
	testOptimizer
	testUFFForceField
	testMMFFForceField
	pyForceFieldConstraints
	testDistGeom
	pyDistGeom
	graphmolTest1
	graphmolcpTest
	graphmolqueryTest
	graphmolMolOpsTest
	graphmoltestCanon
	graphmoltestChirality
	graphmoltestPickler
	graphmoltestPicklerGlobalSetting
	graphmolIterTest
	hanoiTest
	graphmolMemTest1
	resMolSupplierTest
	molBundleTest
	testDepictor
	pyDepictor
	smiTest1
	cxsmilesTest
	smaTest1
	fileParsersTest1
	testMolSupplier
	testMolWriter
	testTplParser
	testMol2ToMol
	testSequence
	testSubstructMatch
	testReaction
	testReactionFingerprints
	testEnumeration
	pyChemReactions
	pyChemReactionEnumerations
	pyChemReactionSanitize
	testChemTransforms
	testSubgraphs1
	testSubgraphs2
	filterCatalogTest
	pyFilterCatalog
	testFragCatalog
	pyFragCatalog
	testDescriptors
	testAUTOCORR2D
	testPBF
	testRDF
	testMORSE
	test3D
	testWHIM
	testGETAWAY
	testAUTOCORR3D
	pyMolDescriptors
	pyMolDescriptors3D
	testFingerprints
	testPartialCharges
	pyPartialCharges
	testMolTransforms
	pyMolTransforms
	testMMFFForceFieldHelpers
	testUFFForceFieldHelpers
	testCrystalForceField
	pyForceFieldHelpers
	testDistGeomHelpers
	pyDistGeom
	testMolAlign
	pyMolAlign
	testFeatures
	pyChemicalFeatures
	testShapeHelpers
	pyShapeHelpers
	testMolCatalog
	pyMolCatalog
	moldraw2DTest1
	moldraw2DRxnTest1
	pyMolDraw2D
	testFMCS
	pyFMCS
	FMCStest
	testMolHash
	pyMolHash
	testMMPA
	pyMMPA
	testStructChecker
	pyStructChecker
	testReducedGraphs
	pyReducedGraphs
	trajectoryTest
	substructLibraryTest
	pySubstructLibrary
	testRGroupDecomp
	pyRGroupDecomposition
	testSLNParse
	pySLNParse
	pyGraphMolWrap
	pyTestConformerWrap
	pyTestTrajectory
	pyTestThreads
	testQuery
	testMatCalc
	pyMatCalc
	testSimDivPickers
	pySimDivPickers
	pyRanker
	testChemicalFeatures
	pyFeatures
	pythonTestDbCLI
	pythonTestDirML
	pythonTestDirDataStructs
	pythonTestDirDbase
	pythonTestDirSimDivFilters
	pythonTestDirVLib
	pythonTestDirChem

100% tests passed, 0 tests failed out of 130

Total Test time (real) = 408.91 sec
~/build/BUILD/rdkit-Release_2017_09_3
+ popd
+ exit 0
Processing files: rdkit-2017.09.3-2.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.K7FnlY
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-2017.09.3
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-2017.09.3
+ cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-2017.09.3
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.BHGR4x
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/licenses/rdkit-2017.09.3
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/licenses/rdkit-2017.09.3
+ cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/licenses/rdkit-2017.09.3
+ exit 0
Provides: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) rdkit = 2017.09.3-2.el7.centos rdkit(x86-64) = 2017.09.3-2.el7.centos
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python-mt.so.1.53.0()(64bit) libboost_regex-mt.so.1.53.0()(64bit) libboost_serialization-mt.so.1.53.0()(64bit) libboost_system-mt.so.1.53.0()(64bit) libboost_thread-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpthread.so.0(GLIBC_2.3.2)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-devel-2017.09.3-2.el7.centos.x86_64
Provides: rdkit-devel = 2017.09.3-2.el7.centos rdkit-devel(x86-64) = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit)
Processing files: rdkit-doc-2017.09.3-2.el7.centos.noarch
Provides: rdkit-doc = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Processing files: python2-rdkit-2017.09.3-2.el7.centos.x86_64
Provides: python-rdkit = 2017.09.3-2.el7.centos python2-rdkit = 2017.09.3-2.el7.centos python2-rdkit(x86-64) = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python-mt.so.1.53.0()(64bit) libboost_system-mt.so.1.53.0()(64bit) libboost_thread-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpthread.so.0(GLIBC_2.3.2)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 2.7 rtld(GNU_HASH)
Obsoletes: python-rdkit < 2017.09.3-2.el7.centos
Processing files: rdkit-postgresql-2017.09.3-2.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.dH3Cpr
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2017.09.3
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2017.09.3
+ cp -pr python2/Code/PgSQL/rdkit/README /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2017.09.3
+ exit 0
Provides: librdkit.so()(64bit) rdkit-postgresql = 2017.09.3-2.el7.centos rdkit-postgresql(x86-64) = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libboost_system-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-debuginfo-2017.09.3-2.el7.centos.x86_64
Provides: rdkit-debuginfo = 2017.09.3-2.el7.centos rdkit-debuginfo(x86-64) = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
Wrote: /builddir/build/RPMS/rdkit-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-devel-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-doc-2017.09.3-2.el7.centos.noarch.rpm
Wrote: /builddir/build/RPMS/python2-rdkit-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-debuginfo-2017.09.3-2.el7.centos.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.3JVsG0
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ exit 0
Finish: rpmbuild rdkit-2017.09.3-2.el7.centos.src.rpm
Finish: build phase for rdkit-2017.09.3-2.el7.centos.src.rpm
INFO: Done(/var/lib/copr-rpmbuild/results/rdkit-2017.09.3-2.el7.centos.src.rpm) Config(child) 33 minutes 17 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run