Mock Version: 2.10 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/h5py.spec'], chrootPath='/var/lib/mock/centos-stream-8-x86_64-1622759296.159212/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3kskmf48:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3kskmf48:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '6e9add477ca04ca9a0ba8e5b0f9d9635', '-D', '/var/lib/mock/centos-stream-8-x86_64-1622759296.159212/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3kskmf48:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/h5py.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False warning: line 85: Possible unexpanded macro in: Requires: hdf5(x86-64) = %{_hdf5_version} warning: line 105: Possible unexpanded macro in: Requires: hdf5(x86-64) = %{_hdf5_version} Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/h5py-2.10.0-4.el8.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/h5py.spec'], chrootPath='/var/lib/mock/centos-stream-8-x86_64-1622759296.159212/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3kskmf48:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3kskmf48:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'c3f70b14c4b74ee48450dadd7089594c', '-D', '/var/lib/mock/centos-stream-8-x86_64-1622759296.159212/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3kskmf48:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/h5py.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Te5ocv + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf h5py-2.10.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/h5py-2.10.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd h5py-2.10.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (h5py-system-lzf.patch): + echo 'Patch #0 (h5py-system-lzf.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .lzf --fuzz=0 patching file lzf/lzf_filter.c patching file setup_build.py + echo 'Patch #1 (h5py-2.10.x-branch.patch):' Patch #1 (h5py-2.10.x-branch.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .2.10.x --fuzz=0 patching file h5py/_hl/dataset.py patching file h5py/h5t.pyx patching file h5py/tests/test_dataset.py + rm -rf lzf/lzf + /usr/libexec/platform-python api_gen.py + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.kPmpzt + umask 022 + cd /builddir/build/BUILD + cd h5py-2.10.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/libexec/platform-python setup.py build '--executable=/usr/libexec/platform-python -s' running build running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/h5py copying h5py/version.py -> build/lib.linux-x86_64-3.6/h5py copying h5py/ipy_completer.py -> build/lib.linux-x86_64-3.6/h5py copying h5py/highlevel.py -> build/lib.linux-x86_64-3.6/h5py copying h5py/h5py_warnings.py -> build/lib.linux-x86_64-3.6/h5py copying h5py/__init__.py -> build/lib.linux-x86_64-3.6/h5py creating build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/vds.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/selections.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/group.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/filters.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/files.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/dims.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/compat.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/base.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.linux-x86_64-3.6/h5py/_hl creating build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dataset.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_threads.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_slicing.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_selections.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_objects.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5t.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5pl.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5p.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5f.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_group.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_filters.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_file_image.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_file2.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_file.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dtype.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dimension_scales.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_deprecation.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_datatype.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dataset_swmr.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dataset_getitem.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_completions.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_base.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_attrs_data.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_attrs.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_attribute_create.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/common.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/__init__.py -> build/lib.linux-x86_64-3.6/h5py/tests creating build/lib.linux-x86_64-3.6/h5py/tests/test_vds copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.linux-x86_64-3.6/h5py/tests/test_vds copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.linux-x86_64-3.6/h5py/tests/test_vds copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.linux-x86_64-3.6/h5py/tests/test_vds copying h5py/tests/test_vds/__init__.py -> build/lib.linux-x86_64-3.6/h5py/tests/test_vds running build_ext warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/h5fd.pxd:18:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/h5fd.pxd:19:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/h5fd.pxd:20:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/h5fd.pxd:21:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/h5fd.pxd:22:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/h5fd.pxd:23:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/h5fd.pxd:24:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/h5fd.pxd:25:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/h5fd.pxd:26:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/h5fd.pxd:31:8: 'H5FD_CORE' redeclared warning: h5py/h5fd.pxd:32:8: 'H5FD_FAMILY' redeclared warning: h5py/h5fd.pxd:34:8: 'H5FD_LOG' redeclared warning: h5py/h5fd.pxd:35:8: 'H5FD_MPIO' redeclared warning: h5py/h5fd.pxd:37:8: 'H5FD_MULTI' redeclared warning: h5py/h5fd.pxd:38:8: 'H5FD_SEC2' redeclared warning: h5py/h5fd.pxd:39:8: 'H5FD_STDIO' redeclared warning: h5py/h5fd.pxd:44:6: 'H5FD_LOG_LOC_READ' redeclared warning: h5py/h5fd.pxd:45:6: 'H5FD_LOG_LOC_WRITE' redeclared warning: h5py/h5fd.pxd:46:6: 'H5FD_LOG_LOC_SEEK' redeclared warning: h5py/h5fd.pxd:47:6: 'H5FD_LOG_LOC_IO' redeclared warning: h5py/h5fd.pxd:50:6: 'H5FD_LOG_FILE_READ' redeclared warning: h5py/h5fd.pxd:51:6: 'H5FD_LOG_FILE_WRITE' redeclared warning: h5py/h5fd.pxd:52:6: 'H5FD_LOG_FILE_IO' redeclared warning: h5py/h5fd.pxd:55:6: 'H5FD_LOG_FLAVOR' redeclared warning: h5py/h5fd.pxd:58:6: 'H5FD_LOG_NUM_READ' redeclared warning: h5py/h5fd.pxd:59:6: 'H5FD_LOG_NUM_WRITE' redeclared warning: h5py/h5fd.pxd:60:6: 'H5FD_LOG_NUM_SEEK' redeclared warning: h5py/h5fd.pxd:61:6: 'H5FD_LOG_NUM_IO' redeclared warning: h5py/h5fd.pxd:64:6: 'H5FD_LOG_TIME_OPEN' redeclared warning: h5py/h5fd.pxd:65:6: 'H5FD_LOG_TIME_READ' redeclared warning: h5py/h5fd.pxd:66:6: 'H5FD_LOG_TIME_WRITE' redeclared warning: h5py/h5fd.pxd:67:6: 'H5FD_LOG_TIME_SEEK' redeclared warning: h5py/h5fd.pxd:68:6: 'H5FD_LOG_TIME_CLOSE' redeclared warning: h5py/h5fd.pxd:69:6: 'H5FD_LOG_TIME_IO' redeclared warning: h5py/h5fd.pxd:72:6: 'H5FD_LOG_ALLOC' redeclared warning: h5py/h5fd.pxd:73:6: 'H5FD_LOG_ALL' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared Loading library to get version: libhdf5.so Autodetected HDF5 1.10.5 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.5' MPI Enabled: False Rebuild Required: True ******************************************************************************** Executing cythonize() [ 1/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.pyx [ 2/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.pyx [ 3/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/_objects.pyx [ 4/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.pyx [ 5/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/defs.pyx [ 6/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5.pyx [ 7/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.pyx [ 8/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.pyx [ 9/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.pyx [10/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.pyx [11/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5f.pyx [12/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.pyx [13/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.pyx [14/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5i.pyx [15/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.pyx [16/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5o.pyx [17/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.pyx [18/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.pyx [19/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5r.pyx [20/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5s.pyx [21/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.pyx [22/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5z.pyx [23/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/utils.pyx building 'h5py.defs' extension creating build/temp.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/builddir creating build/temp.linux-x86_64-3.6/builddir/build creating build/temp.linux-x86_64-3.6/builddir/build/BUILD creating build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0 creating build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/defs.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c: In function ‘__pyx_f_4h5py_4defs_H5Pget_driver_info’: /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c:21212:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_1 = H5Pget_driver_info(__pyx_v_plist_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 2016, __pyx_L1_error) ^ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c:643: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/defs.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/defs.cpython-36m-x86_64-linux-gnu.so building 'h5py._errors' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_errors.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c: In function ‘__pyx_f_4h5py_7_errors_walk_cb’: /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:1324:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_3 = (__pyx_v_desc[0]).desc; ^ /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c: In function ‘__pyx_f_4h5py_7_errors_set_exception’: /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:1613:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:1696:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:643: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_errors.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/_errors.cpython-36m-x86_64-linux-gnu.so building 'h5py._objects' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/_objects.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_objects.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_objects.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_objects.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_objects.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/_objects.cpython-36m-x86_64-linux-gnu.so building 'h5py._proxy' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/_proxy.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5fd' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5fd.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5z' extension creating build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/lzf gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5z.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5z.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5z.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5z.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/lzf/lzf_filter.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/lzf/lzf_filter.o gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5z.o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/lzf/lzf_filter.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5z.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5i' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5i.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5i.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5i.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5i.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5i.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5i.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5r' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5r.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5r.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5r.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5r.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5r.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5r.cpython-36m-x86_64-linux-gnu.so building 'h5py.utils' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/utils.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/utils.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/utils.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/utils.c: In function ‘__pyx_pymod_exec_utils’: /builddir/build/BUILD/h5py-2.10.0/h5py/utils.c:3468:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/utils.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/utils.cpython-36m-x86_64-linux-gnu.so building 'h5py._conv' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_conv.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c: In function ‘__pyx_pymod_exec__conv’: /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c:8545:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ At top level: /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c:1918:18: warning: ‘__pyx_f_4h5py_5_conv_objectify’ defined but not used [-Wunused-function] static PyObject *__pyx_f_4h5py_5_conv_objectify(PyObject *__pyx_v_o) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_conv.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/_conv.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5t' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5t.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/include/python3.6m/Python.h:97, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c:47: /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c: In function ‘__pyx_f_4h5py_3h5t__get_available_ftypes’: /usr/include/python3.6m/tupleobject.h:62:73: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from incompatible pointer type ‘PyTypeObject *’ {aka ‘struct _typeobject *’} [-Wincompatible-pointer-types] #define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v) ^ /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c:3824:5: note: in expansion of macro ‘PyTuple_SET_ITEM’ PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_v_fdtype->typeobj); ^~~~~~~~~~~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c:644: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5t.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5t.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5s' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5s.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5s.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5s.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5s.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5s.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5s.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5p' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5p.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c: In function ‘__pyx_pymod_exec_h5p’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:24837:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c: In function ‘__Pyx_PyInt_As_hbool_t’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:31754:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:31772:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:31790:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5p.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5p.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5d' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5d.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.c: In function ‘__pyx_pymod_exec_h5d’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.c:8785:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5d.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5d.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5a' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5a.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.c: In function ‘__pyx_pymod_exec_h5a’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.c:9298:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5a.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5a.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5f' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5f.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5f.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5f.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5f.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5f.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5f.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5g' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5g.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c: In function ‘__pyx_pf_4h5py_3h5g_7GroupID_22__contains__’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c:6565:37: warning: variable ‘__pyx_v_new_handler’ set but not used [-Wunused-but-set-variable] __pyx_t_4h5py_7_errors_err_cookie __pyx_v_new_handler; ^~~~~~~~~~~~~~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c:644: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5g.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5g.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5l' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5l.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c: In function ‘__pyx_pf_4h5py_3h5l_9LinkProxy_12get_val’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:3974:95: warning: passing argument 4 of ‘__pyx_f_4h5py_4defs_H5Lunpack_elink_val’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:3974:95: note: expected ‘const char **’ but argument is of type ‘char **’ /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:3974:121: warning: passing argument 5 of ‘__pyx_f_4h5py_4defs_H5Lunpack_elink_val’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:3974:121: note: expected ‘const char **’ but argument is of type ‘char **’ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:644: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5l.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5l.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5o' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5o.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5o.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5o.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5o.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5o.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5o.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5ds' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5ds.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5ac' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:643: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c: In function ‘__Pyx_PyInt_As_hbool_t’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:6774:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:6792:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:6810:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:643: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5ac.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5pl' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.c:644: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5pl.cpython-36m-x86_64-linux-gnu.so warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared + sleep 1 + mv build serial + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 61 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-x86_64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64' + /usr/libexec/platform-python setup.py configure --mpi running configure Loading library to get version: libhdf5.so Autodetected HDF5 1.10.5 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.5' MPI Enabled: True Rebuild Required: True ******************************************************************************** + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/libexec/platform-python setup.py build '--executable=/usr/libexec/platform-python -s' running build running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/h5py copying h5py/version.py -> build/lib.linux-x86_64-3.6/h5py copying h5py/ipy_completer.py -> build/lib.linux-x86_64-3.6/h5py copying h5py/highlevel.py -> build/lib.linux-x86_64-3.6/h5py copying h5py/h5py_warnings.py -> build/lib.linux-x86_64-3.6/h5py copying h5py/__init__.py -> build/lib.linux-x86_64-3.6/h5py creating build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/vds.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/selections.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/group.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/filters.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/files.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/dims.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/compat.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/base.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.linux-x86_64-3.6/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.linux-x86_64-3.6/h5py/_hl creating build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dataset.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_threads.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_slicing.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_selections.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_objects.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5t.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5pl.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5p.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5f.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_h5.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_group.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_filters.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_file_image.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_file2.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_file.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dtype.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dimension_scales.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_deprecation.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_datatype.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dataset_swmr.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_dataset_getitem.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_completions.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_base.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_attrs_data.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_attrs.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/test_attribute_create.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/common.py -> build/lib.linux-x86_64-3.6/h5py/tests copying h5py/tests/__init__.py -> build/lib.linux-x86_64-3.6/h5py/tests creating build/lib.linux-x86_64-3.6/h5py/tests/test_vds copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.linux-x86_64-3.6/h5py/tests/test_vds copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.linux-x86_64-3.6/h5py/tests/test_vds copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.linux-x86_64-3.6/h5py/tests/test_vds copying h5py/tests/test_vds/__init__.py -> build/lib.linux-x86_64-3.6/h5py/tests/test_vds running build_ext warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/h5fd.pxd:18:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/h5fd.pxd:19:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/h5fd.pxd:20:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/h5fd.pxd:21:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/h5fd.pxd:22:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/h5fd.pxd:23:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/h5fd.pxd:24:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/h5fd.pxd:25:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/h5fd.pxd:26:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/h5fd.pxd:31:8: 'H5FD_CORE' redeclared warning: h5py/h5fd.pxd:32:8: 'H5FD_FAMILY' redeclared warning: h5py/h5fd.pxd:34:8: 'H5FD_LOG' redeclared warning: h5py/h5fd.pxd:35:8: 'H5FD_MPIO' redeclared warning: h5py/h5fd.pxd:37:8: 'H5FD_MULTI' redeclared warning: h5py/h5fd.pxd:38:8: 'H5FD_SEC2' redeclared warning: h5py/h5fd.pxd:39:8: 'H5FD_STDIO' redeclared warning: h5py/h5fd.pxd:42:8: 'H5FD_MPIO_COLLECTIVE' redeclared warning: h5py/h5fd.pxd:43:8: 'H5FD_MPIO_INDEPENDENT' redeclared warning: h5py/h5fd.pxd:44:6: 'H5FD_LOG_LOC_READ' redeclared warning: h5py/h5fd.pxd:45:6: 'H5FD_LOG_LOC_WRITE' redeclared warning: h5py/h5fd.pxd:46:6: 'H5FD_LOG_LOC_SEEK' redeclared warning: h5py/h5fd.pxd:47:6: 'H5FD_LOG_LOC_IO' redeclared warning: h5py/h5fd.pxd:50:6: 'H5FD_LOG_FILE_READ' redeclared warning: h5py/h5fd.pxd:51:6: 'H5FD_LOG_FILE_WRITE' redeclared warning: h5py/h5fd.pxd:52:6: 'H5FD_LOG_FILE_IO' redeclared warning: h5py/h5fd.pxd:55:6: 'H5FD_LOG_FLAVOR' redeclared warning: h5py/h5fd.pxd:58:6: 'H5FD_LOG_NUM_READ' redeclared warning: h5py/h5fd.pxd:59:6: 'H5FD_LOG_NUM_WRITE' redeclared warning: h5py/h5fd.pxd:60:6: 'H5FD_LOG_NUM_SEEK' redeclared warning: h5py/h5fd.pxd:61:6: 'H5FD_LOG_NUM_IO' redeclared warning: h5py/h5fd.pxd:64:6: 'H5FD_LOG_TIME_OPEN' redeclared warning: h5py/h5fd.pxd:65:6: 'H5FD_LOG_TIME_READ' redeclared warning: h5py/h5fd.pxd:66:6: 'H5FD_LOG_TIME_WRITE' redeclared warning: h5py/h5fd.pxd:67:6: 'H5FD_LOG_TIME_SEEK' redeclared warning: h5py/h5fd.pxd:68:6: 'H5FD_LOG_TIME_CLOSE' redeclared warning: h5py/h5fd.pxd:69:6: 'H5FD_LOG_TIME_IO' redeclared warning: h5py/h5fd.pxd:72:6: 'H5FD_LOG_ALLOC' redeclared warning: h5py/h5fd.pxd:73:6: 'H5FD_LOG_ALL' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared Loading library to get version: libhdf5.so Autodetected HDF5 1.10.5 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.5' MPI Enabled: True Rebuild Required: True ******************************************************************************** Executing cythonize() [ 1/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.pyx [ 2/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.pyx [ 3/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/_objects.pyx [ 4/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.pyx [ 5/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/defs.pyx [ 6/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5.pyx [ 7/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.pyx [ 8/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.pyx [ 9/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.pyx [10/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.pyx [11/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5f.pyx [12/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.pyx [13/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.pyx [14/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5i.pyx [15/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.pyx [16/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5o.pyx [17/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.pyx [18/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.pyx [19/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5r.pyx [20/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5s.pyx [21/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.pyx [22/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/h5z.pyx [23/23] Cythonizing /builddir/build/BUILD/h5py-2.10.0/h5py/utils.pyx building 'h5py.defs' extension creating build/temp.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/builddir creating build/temp.linux-x86_64-3.6/builddir/build creating build/temp.linux-x86_64-3.6/builddir/build/BUILD creating build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0 creating build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/defs.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c: In function ‘__pyx_f_4h5py_4defs_H5Pget_driver_info’: /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c:21786:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_1 = H5Pget_driver_info(__pyx_v_plist_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 2016, __pyx_L1_error) ^ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/defs.c:645: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/defs.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/defs.cpython-36m-x86_64-linux-gnu.so building 'h5py._errors' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_errors.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c: In function ‘__pyx_f_4h5py_7_errors_walk_cb’: /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:1674:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_3 = (__pyx_v_desc[0]).desc; ^ /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c: In function ‘__pyx_f_4h5py_7_errors_set_exception’: /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:1963:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:2046:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_errors.c:645: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_errors.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/_errors.cpython-36m-x86_64-linux-gnu.so building 'h5py._objects' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/_objects.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_objects.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_objects.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_objects.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_objects.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/_objects.cpython-36m-x86_64-linux-gnu.so building 'h5py._proxy' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_proxy.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/_proxy.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5fd' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5fd.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5fd.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5z' extension creating build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/lzf gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5z.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5z.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5z.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5z.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/lzf/lzf_filter.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/lzf/lzf_filter.o gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5z.o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/lzf/lzf_filter.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5z.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5i' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5i.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5i.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5i.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5i.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5i.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5i.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5r' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5r.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5r.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5r.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5r.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5r.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5r.cpython-36m-x86_64-linux-gnu.so building 'h5py.utils' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/utils.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/utils.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/utils.c:647: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/utils.c: In function ‘__pyx_pymod_exec_utils’: /builddir/build/BUILD/h5py-2.10.0/h5py/utils.c:3848:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/utils.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/utils.cpython-36m-x86_64-linux-gnu.so building 'h5py._conv' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_conv.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c: In function ‘__pyx_pymod_exec__conv’: /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c:8925:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ At top level: /builddir/build/BUILD/h5py-2.10.0/h5py/_conv.c:2257:18: warning: ‘__pyx_f_4h5py_5_conv_objectify’ defined but not used [-Wunused-function] static PyObject *__pyx_f_4h5py_5_conv_objectify(PyObject *__pyx_v_o) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/_conv.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/_conv.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5t' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5t.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/include/python3.6m/Python.h:97, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c:48: /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c: In function ‘__pyx_f_4h5py_3h5t__get_available_ftypes’: /usr/include/python3.6m/tupleobject.h:62:73: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from incompatible pointer type ‘PyTypeObject *’ {aka ‘struct _typeobject *’} [-Wincompatible-pointer-types] #define PyTuple_SET_ITEM(op, i, v) (((PyTupleObject *)(op))->ob_item[i] = v) ^ /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c:4163:5: note: in expansion of macro ‘PyTuple_SET_ITEM’ PyTuple_SET_ITEM(__pyx_t_4, 0, __pyx_v_fdtype->typeobj); ^~~~~~~~~~~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5t.c:646: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5t.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5t.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5s' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5s.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5s.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5s.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5s.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5s.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5s.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5p' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5p.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c: In function ‘__pyx_pymod_exec_h5p’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:25778:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c: In function ‘__Pyx_PyInt_As_hbool_t’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:32812:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:32830:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5p.c:32848:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5p.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5p.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5d' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5d.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.c: In function ‘__pyx_pymod_exec_h5d’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5d.c:9165:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5d.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5d.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5a' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5a.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.c: In function ‘__pyx_pymod_exec_h5a’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5a.c:9678:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] import_array(); ^~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5a.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5a.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5f' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5f.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5f.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5f.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5f.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5f.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5f.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5g' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5g.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c: In function ‘__pyx_pf_4h5py_3h5g_7GroupID_22__contains__’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c:6904:37: warning: variable ‘__pyx_v_new_handler’ set but not used [-Wunused-but-set-variable] __pyx_t_4h5py_7_errors_err_cookie __pyx_v_new_handler; ^~~~~~~~~~~~~~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5g.c:646: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5g.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5g.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5l' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5l.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c: In function ‘__pyx_pf_4h5py_3h5l_9LinkProxy_12get_val’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:4313:95: warning: passing argument 4 of ‘__pyx_f_4h5py_4defs_H5Lunpack_elink_val’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:4313:95: note: expected ‘const char **’ but argument is of type ‘char **’ /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:4313:121: warning: passing argument 5 of ‘__pyx_f_4h5py_4defs_H5Lunpack_elink_val’ from incompatible pointer type [-Wincompatible-pointer-types] __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(PyErr_Occurred())) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:4313:121: note: expected ‘const char **’ but argument is of type ‘char **’ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5l.c:646: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5l.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5l.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5o' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5o.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5o.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5o.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5o.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5o.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5o.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5ds' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5ds.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5ds.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5ac' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:645: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c: In function ‘__Pyx_PyInt_As_hbool_t’: /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:7154:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:7172:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:7190:60: warning: ‘*’ in boolean context, suggest ‘&&’ instead [-Wint-in-bool-context] return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.c:645: At top level: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5ac.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5ac.cpython-36m-x86_64-linux-gnu.so building 'h5py.h5pl' extension gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 -fPIC -DH5_USE_16_API -I./h5py -I/builddir/build/BUILD/h5py-2.10.0/lzf -I/opt/local/include -I/usr/local/include -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/lib64/python3.6/site-packages/openmpi/mpi4py/include -I/usr/include/python3.6m -c /builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.c -o build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.o In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /builddir/build/BUILD/h5py-2.10.0/h5py/api_compat.h:26, from /builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.c:646: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64 build/temp.linux-x86_64-3.6/builddir/build/BUILD/h5py-2.10.0/h5py/h5pl.o -L/opt/local/lib -L/usr/local/lib -L/usr/lib64 -Wl,--enable-new-dtags,-R/opt/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -llzf -lpython3.6m -o build/lib.linux-x86_64-3.6/h5py/h5pl.cpython-36m-x86_64-linux-gnu.so warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared warning: h5py/api_types_hdf5.pxd:418:2: 'H5D_layout_t' redeclared warning: h5py/api_types_hdf5.pxd:425:2: 'H5D_alloc_time_t' redeclared warning: h5py/api_types_hdf5.pxd:432:2: 'H5D_space_status_t' redeclared warning: h5py/api_types_hdf5.pxd:438:2: 'H5D_fill_time_t' redeclared warning: h5py/api_types_hdf5.pxd:444:2: 'H5D_fill_value_t' redeclared warning: h5py/api_types_hdf5.pxd:456:7: 'H5F_close_degree_t' redeclared warning: h5py/api_types_hdf5.pxd:462:2: 'H5FD_mem_t' redeclared warning: h5py/api_types_hdf5.pxd:560:2: 'H5T_cset_t' redeclared warning: h5py/api_types_hdf5.pxd:739:7: 'H5Z_EDC_t' redeclared warning: h5py/api_types_hdf5.pxd:419:4: 'H5D_LAYOUT_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:420:4: 'H5D_COMPACT' redeclared warning: h5py/api_types_hdf5.pxd:421:4: 'H5D_CONTIGUOUS' redeclared warning: h5py/api_types_hdf5.pxd:422:4: 'H5D_CHUNKED' redeclared warning: h5py/api_types_hdf5.pxd:423:4: 'H5D_NLAYOUTS' redeclared warning: h5py/api_types_hdf5.pxd:426:4: 'H5D_ALLOC_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:427:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:428:4: 'H5D_ALLOC_TIME_EARLY' redeclared warning: h5py/api_types_hdf5.pxd:429:4: 'H5D_ALLOC_TIME_LATE' redeclared warning: h5py/api_types_hdf5.pxd:430:4: 'H5D_ALLOC_TIME_INCR' redeclared warning: h5py/api_types_hdf5.pxd:433:4: 'H5D_SPACE_STATUS_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:434:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:435:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:436:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared warning: h5py/api_types_hdf5.pxd:439:4: 'H5D_FILL_TIME_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:440:4: 'H5D_FILL_TIME_ALLOC' redeclared warning: h5py/api_types_hdf5.pxd:441:4: 'H5D_FILL_TIME_NEVER' redeclared warning: h5py/api_types_hdf5.pxd:442:4: 'H5D_FILL_TIME_IFSET' redeclared warning: h5py/api_types_hdf5.pxd:445:4: 'H5D_FILL_VALUE_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:446:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared warning: h5py/api_types_hdf5.pxd:447:4: 'H5D_FILL_VALUE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:448:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared warning: h5py/api_types_hdf5.pxd:457:4: 'H5F_CLOSE_WEAK' redeclared warning: h5py/api_types_hdf5.pxd:458:4: 'H5F_CLOSE_SEMI' redeclared warning: h5py/api_types_hdf5.pxd:459:4: 'H5F_CLOSE_STRONG' redeclared warning: h5py/api_types_hdf5.pxd:460:4: 'H5F_CLOSE_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:463:4: 'H5FD_MEM_NOLIST' redeclared warning: h5py/api_types_hdf5.pxd:464:4: 'H5FD_MEM_DEFAULT' redeclared warning: h5py/api_types_hdf5.pxd:465:4: 'H5FD_MEM_SUPER' redeclared warning: h5py/api_types_hdf5.pxd:466:4: 'H5FD_MEM_BTREE' redeclared warning: h5py/api_types_hdf5.pxd:467:4: 'H5FD_MEM_DRAW' redeclared warning: h5py/api_types_hdf5.pxd:468:4: 'H5FD_MEM_GHEAP' redeclared warning: h5py/api_types_hdf5.pxd:469:4: 'H5FD_MEM_LHEAP' redeclared warning: h5py/api_types_hdf5.pxd:470:4: 'H5FD_MEM_OHDR' redeclared warning: h5py/api_types_hdf5.pxd:471:4: 'H5FD_MEM_NTYPES' redeclared warning: h5py/api_types_hdf5.pxd:561:4: 'H5T_CSET_ERROR' redeclared warning: h5py/api_types_hdf5.pxd:562:4: 'H5T_CSET_ASCII' redeclared warning: h5py/api_types_hdf5.pxd:705:2: 'H5Z_filter_t' redeclared warning: h5py/api_types_hdf5.pxd:740:6: 'H5Z_ERROR_EDC' redeclared warning: h5py/api_types_hdf5.pxd:741:6: 'H5Z_DISABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:742:6: 'H5Z_ENABLE_EDC' redeclared warning: h5py/api_types_hdf5.pxd:743:6: 'H5Z_NO_EDC' redeclared + sleep 1 + mv build openmpi + /usr/libexec/platform-python setup.py configure --reset running configure Loading library to get version: libhdf5.so Autodetected HDF5 1.10.5 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.5' MPI Enabled: False Rebuild Required: True ******************************************************************************** + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 61 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-x86_64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.o2JAZs + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 ++ dirname /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 + cd h5py-2.10.0 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 393 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-x86_64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python3.6/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/etc/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mv openmpi build + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64' + /usr/libexec/platform-python setup.py configure --mpi running configure Loading library to get version: libhdf5.so Autodetected HDF5 1.10.5 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.5' MPI Enabled: True Rebuild Required: True ******************************************************************************** + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/libexec/platform-python setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 running install running install_lib creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6 creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5pl.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5ac.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5ds.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5o.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5l.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5g.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5f.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5a.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5d.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5p.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5s.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5t.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/_conv.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/utils.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5r.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5i.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5z.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5fd.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/_proxy.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/_objects.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/_errors.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/defs.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/test_vds/__init__.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/test_vds/test_highlevel_vds.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/test_vds/test_lowlevel_vds.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/test_vds/test_virtual_source.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/__init__.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/common.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_attribute_create.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_attrs.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_attrs_data.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_base.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_completions.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dataset_getitem.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dataset_swmr.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_datatype.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_deprecation.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dimension_scales.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dims_dimensionproxy.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dtype.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_file.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_file2.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_file_image.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_filters.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_group.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5d_direct_chunk.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5f.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5p.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5pl.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5t.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_objects.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_selections.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_slicing.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_threads.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dataset.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/__init__.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/attrs.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/base.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/compat.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/datatype.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/dims.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/files.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/filters.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/group.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/selections.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/selections2.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/vds.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/dataset.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/__init__.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5py_warnings.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/highlevel.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/ipy_completer.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/version.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds/test_highlevel_vds.py to test_highlevel_vds.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds/test_lowlevel_vds.py to test_lowlevel_vds.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds/test_virtual_source.py to test_virtual_source.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/common.py to common.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_attribute_create.py to test_attribute_create.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_attrs.py to test_attrs.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_attrs_data.py to test_attrs_data.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_base.py to test_base.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_completions.py to test_completions.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dataset_getitem.py to test_dataset_getitem.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dataset_swmr.py to test_dataset_swmr.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_datatype.py to test_datatype.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_deprecation.py to test_deprecation.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dimension_scales.py to test_dimension_scales.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dims_dimensionproxy.py to test_dims_dimensionproxy.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dtype.py to test_dtype.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_file.py to test_file.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_file2.py to test_file2.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_file_image.py to test_file_image.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_filters.py to test_filters.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_group.py to test_group.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5.py to test_h5.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5d_direct_chunk.py to test_h5d_direct_chunk.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5f.py to test_h5f.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5p.py to test_h5p.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5pl.py to test_h5pl.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5t.py to test_h5t.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_objects.py to test_objects.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_selections.py to test_selections.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_slicing.py to test_slicing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_threads.py to test_threads.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dataset.py to test_dataset.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/attrs.py to attrs.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/base.py to base.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/compat.py to compat.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/datatype.py to datatype.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/dims.py to dims.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/files.py to files.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/filters.py to filters.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/group.py to group.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/selections.py to selections.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/selections2.py to selections2.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/vds.py to vds.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/dataset.py to dataset.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/h5py_warnings.py to h5py_warnings.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/highlevel.py to highlevel.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/ipy_completer.py to ipy_completer.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/version.py to version.cpython-36.pyc writing byte-compilation script '/tmp/tmp0v94qp5k.py' /usr/libexec/platform-python /tmp/tmp0v94qp5k.py removing /tmp/tmp0v94qp5k.py running install_egg_info running egg_info writing h5py.egg-info/PKG-INFO writing dependency_links to h5py.egg-info/dependency_links.txt writing requirements to h5py.egg-info/requires.txt writing top-level names to h5py.egg-info/top_level.txt reading manifest file 'h5py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'docs/_build' no previously-included directories found matching 'docs_api/_build' warning: no previously-included files matching '.DS_Store' found under directory '*' warning: no previously-included files found matching 'ci' warning: no previously-included files found matching 'other' warning: no previously-included files found matching '.github' warning: no previously-included files matching '*' found under directory 'ci' warning: no previously-included files matching '*' found under directory 'other' warning: no previously-included files matching '*' found under directory '.github' warning: no previously-included files found matching 'pavement.py' warning: no previously-included files found matching '*.yml' warning: no previously-included files found matching '*.yaml' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.mailmap' warning: no previously-included files found matching 'rever.xsh' no previously-included directories found matching 'news' writing manifest file 'h5py.egg-info/SOURCES.txt' Copying h5py.egg-info to /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py-2.10.0-py3.6.egg-info running install_scripts + mkdir -p /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/openmpi + mv /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/ /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py-2.10.0-py3.6.egg-info /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/openmpi + /usr/libexec/platform-python setup.py configure --reset running configure Loading library to get version: libhdf5.so Autodetected HDF5 1.10.5 ******************************************************************************** Summary of the h5py configuration Path to HDF5: None HDF5 Version: '1.10.5' MPI Enabled: False Rebuild Required: True ******************************************************************************** + mv build openmpi + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 393 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-x86_64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mv serial build + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -I/usr/include/openmpi-x86_64' + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/libexec/platform-python setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 running install running install_lib creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5pl.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5ac.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5ds.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5o.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5l.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5g.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5f.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5a.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5d.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5p.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5s.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5t.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/_conv.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/utils.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5r.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5i.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5z.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5fd.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/_proxy.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/_objects.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/_errors.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/defs.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/test_vds/__init__.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/test_vds/test_highlevel_vds.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/test_vds/test_lowlevel_vds.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/test_vds/test_virtual_source.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds copying build/lib.linux-x86_64-3.6/h5py/tests/__init__.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/common.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_attribute_create.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_attrs.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_attrs_data.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_base.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_completions.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dataset_getitem.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dataset_swmr.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_datatype.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_deprecation.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dimension_scales.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dims_dimensionproxy.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dtype.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_file.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_file2.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_file_image.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_filters.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_group.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5d_direct_chunk.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5f.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5p.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5pl.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_h5t.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_objects.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_selections.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_slicing.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_threads.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests copying build/lib.linux-x86_64-3.6/h5py/tests/test_dataset.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests creating /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/__init__.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/attrs.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/base.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/compat.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/datatype.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/dims.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/files.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/filters.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/group.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/selections.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/selections2.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/vds.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/_hl/dataset.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl copying build/lib.linux-x86_64-3.6/h5py/__init__.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/h5py_warnings.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/highlevel.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/ipy_completer.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py copying build/lib.linux-x86_64-3.6/h5py/version.py -> /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds/test_highlevel_vds.py to test_highlevel_vds.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds/test_lowlevel_vds.py to test_lowlevel_vds.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_vds/test_virtual_source.py to test_virtual_source.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/common.py to common.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_attribute_create.py to test_attribute_create.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_attrs.py to test_attrs.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_attrs_data.py to test_attrs_data.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_base.py to test_base.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_completions.py to test_completions.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dataset_getitem.py to test_dataset_getitem.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dataset_swmr.py to test_dataset_swmr.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_datatype.py to test_datatype.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_deprecation.py to test_deprecation.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dimension_scales.py to test_dimension_scales.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dims_dimensionproxy.py to test_dims_dimensionproxy.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dtype.py to test_dtype.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_file.py to test_file.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_file2.py to test_file2.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_file_image.py to test_file_image.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_filters.py to test_filters.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_group.py to test_group.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5.py to test_h5.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5d_direct_chunk.py to test_h5d_direct_chunk.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5f.py to test_h5f.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5p.py to test_h5p.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5pl.py to test_h5pl.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_h5t.py to test_h5t.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_objects.py to test_objects.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_selections.py to test_selections.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_slicing.py to test_slicing.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_threads.py to test_threads.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/tests/test_dataset.py to test_dataset.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/attrs.py to attrs.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/base.py to base.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/compat.py to compat.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/datatype.py to datatype.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/dims.py to dims.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/files.py to files.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/filters.py to filters.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/group.py to group.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/selections.py to selections.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/selections2.py to selections2.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/vds.py to vds.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/_hl/dataset.py to dataset.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/__init__.py to __init__.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/h5py_warnings.py to h5py_warnings.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/highlevel.py to highlevel.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/ipy_completer.py to ipy_completer.cpython-36.pyc byte-compiling /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py/version.py to version.cpython-36.pyc writing byte-compilation script '/tmp/tmp9dxpsy4u.py' /usr/libexec/platform-python /tmp/tmp9dxpsy4u.py removing /tmp/tmp9dxpsy4u.py running install_egg_info running egg_info writing h5py.egg-info/PKG-INFO writing dependency_links to h5py.egg-info/dependency_links.txt writing requirements to h5py.egg-info/requires.txt writing top-level names to h5py.egg-info/top_level.txt reading manifest file 'h5py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'docs/_build' no previously-included directories found matching 'docs_api/_build' warning: no previously-included files matching '.DS_Store' found under directory '*' warning: no previously-included files found matching 'ci' warning: no previously-included files found matching 'other' warning: no previously-included files found matching '.github' warning: no previously-included files matching '*' found under directory 'ci' warning: no previously-included files matching '*' found under directory 'other' warning: no previously-included files matching '*' found under directory '.github' warning: no previously-included files found matching 'pavement.py' warning: no previously-included files found matching '*.yml' warning: no previously-included files found matching '*.yaml' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.mailmap' warning: no previously-included files found matching 'rever.xsh' no previously-included directories found matching 'news' writing manifest file 'h5py.egg-info/SOURCES.txt' Copying h5py.egg-info to /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages/h5py-2.10.0-py3.6.egg-info running install_scripts + mv build serial + python_binary=/usr/libexec/platform-python + buildroot_path=/builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6/site-packages + bytecode_compilation_path=./usr/lib64/python3.6/site-packages + failure=0 + pushd /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 ~/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 ~/build/BUILD/h5py-2.10.0 + xargs -0 /usr/libexec/platform-python -O -m py_compile + find ./usr/lib64/python3.6/site-packages -type f -a -name '*.py' -print0 + find ./usr/lib64/python3.6/site-packages -type f -a -name '*.py' -print0 + xargs -0 /usr/libexec/platform-python -m py_compile + popd ~/build/BUILD/h5py-2.10.0 + test 0 -eq 0 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile '' 1 Bytecompiling .py files below /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/lib64/python3.6 using /usr/libexec/platform-python + /usr/lib/rpm/brp-python-hardlink + PYTHON3=/usr/libexec/platform-python + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.DbyZ7t + umask 022 + cd /builddir/build/BUILD + cd h5py-2.10.0 + exit 0 Processing files: python3-h5py-2.10.0-4.el8.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.bewvzw + umask 022 + cd /builddir/build/BUILD + cd h5py-2.10.0 + DOCDIR=/builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/doc/python3-h5py + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/doc/python3-h5py + cp -pr ANN.rst /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/doc/python3-h5py + cp -pr README.rst /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/doc/python3-h5py + cp -pr examples /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/doc/python3-h5py + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.X3c3pw + umask 022 + cd /builddir/build/BUILD + cd h5py-2.10.0 + LICENSEDIR=/builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/licenses/python3-h5py + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/licenses/python3-h5py + cp -pr licenses/hdf5.txt licenses/license.txt licenses/pytables.txt licenses/python.txt licenses/stdint.txt /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/licenses/python3-h5py + exit 0 Provides: python3-h5py = 2.10.0-4.el8 python3-h5py(x86-64) = 2.10.0-4.el8 python3.6dist(h5py) = 2.10.0 python3dist(h5py) = 2.10.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgomp.so.1()(64bit) libhdf5.so.103()(64bit) libhdf5_hl.so.100()(64bit) liblzf.so.1()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.6m.so.1.0()(64bit) python(abi) = 3.6 rtld(GNU_HASH) Processing files: python3-h5py-openmpi-2.10.0-4.el8.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.jAtKOw + umask 022 + cd /builddir/build/BUILD + cd h5py-2.10.0 + DOCDIR=/builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/doc/python3-h5py-openmpi + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/doc/python3-h5py-openmpi + cp -pr ANN.rst /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/doc/python3-h5py-openmpi + cp -pr README.rst /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/doc/python3-h5py-openmpi + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.5c4Vqx + umask 022 + cd /builddir/build/BUILD + cd h5py-2.10.0 + LICENSEDIR=/builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/licenses/python3-h5py-openmpi + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/licenses/python3-h5py-openmpi + cp -pr licenses/hdf5.txt licenses/license.txt licenses/pytables.txt licenses/python.txt licenses/stdint.txt /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64/usr/share/licenses/python3-h5py-openmpi + exit 0 Provides: python3-h5py-openmpi = 2.10.0-4.el8 python3-h5py-openmpi(x86-64) = 2.10.0-4.el8 python3.6dist(h5py) = 2.10.0 python3dist(h5py) = 2.10.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgomp.so.1()(64bit) libhdf5.so.103()(64bit)(openmpi-x86_64) libhdf5_hl.so.100()(64bit)(openmpi-x86_64) liblzf.so.1()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.6m.so.1.0()(64bit) python(abi) = 3.6 rtld(GNU_HASH) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 Wrote: /builddir/build/RPMS/python3-h5py-2.10.0-4.el8.x86_64.rpm Wrote: /builddir/build/RPMS/python3-h5py-openmpi-2.10.0-4.el8.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.SWrWAu + umask 022 + cd /builddir/build/BUILD + cd h5py-2.10.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/h5py-2.10.0-4.el8.x86_64 + exit 0 Child return code was: 0