Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target ppc64le --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/rhel+epel-9-ppc64le-1681932082.908112/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fffa2422a10>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zdayyyyr:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zdayyyyr:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '7567394649714815b84e58fd449fde13', '-D', '/var/lib/mock/rhel+epel-9-ppc64le-1681932082.908112/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zdayyyyr:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target ppc64le --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: Macro expanded in comment on line 45: %{version}.tar.gz
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1680912000
Wrote: /builddir/build/SRPMS/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target ppc64le --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/rhel+epel-9-ppc64le-1681932082.908112/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fffa2422a10>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zdayyyyr:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zdayyyyr:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '58d0ae3c8a354e3f8cf31be3ac3059bd', '-D', '/var/lib/mock/rhel+epel-9-ppc64le-1681932082.908112/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zdayyyyr:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target ppc64le --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: Macro expanded in comment on line 45: %{version}.tar.gz
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1680912000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.mQfZaY
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf R-rc
+ /usr/bin/gzip -dc /builddir/build/SOURCES/R-rc_2023-04-18_r84280.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd R-rc
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (R-3.3.0-fix-java_path-in-javareconf.patch):'
Patch #0 (R-3.3.0-fix-java_path-in-javareconf.patch):
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .fixpath --fuzz=0
patching file src/scripts/javareconf.in
Hunk #1 succeeded at 79 (offset 1 line).
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.7t8Kl0
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-rc
+ sed -i -e '/R_LIBS_SITE=/s/^/#/g' etc/Renviron.in
+ echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib64/R/library:/usr/share/R/library'\''}'
+ export R_RD4PDF=times,hyper
+ R_RD4PDF=times,hyper
+ sed -i 's|inconsolata,||g' etc/Renviron.in
+ export R_PDFVIEWER=/usr/bin/xdg-open
+ R_PDFVIEWER=/usr/bin/xdg-open
+ export R_BROWSER=/usr/bin/xdg-open
+ R_BROWSER=/usr/bin/xdg-open
+ export JAVA_HOME=/usr/lib/jvm/jre
+ JAVA_HOME=/usr/lib/jvm/jre
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2023-04-13 22:16:15.000000000 +0000
+++ ./configure	2023-04-19 19:25:08.332468437 +0000
@@ -2542,7 +2542,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2023-04-19 19:25:08.332468437 +0000
+++ ./configure	2023-04-19 19:25:08.412466071 +0000
@@ -12170,7 +12170,7 @@
 # Transform an extracted symbol line into a proper C declaration.
 # Some systems (esp. on ia64) link data and code symbols differently,
 # so use this general approach.
-lt_cv_sys_global_symbol_to_cdecl="sed -n"\
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 $lt_cdecl_hook\
 " -e 's/^T .* \(.*\)$/extern int \1();/p'"\
 " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'"
@@ -59344,7 +59344,7 @@
 compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
 GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./tools/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./tools/config.sub
++ basename ./tools/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './tools/config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./tools/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./tools/config.guess
++ basename ./tools/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './tools/config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./tools/ltmain.sh
+ ./configure --build=powerpc64le-redhat-linux-gnu --host=powerpc64le-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R --with-system-tre --with-system-valgrind-headers --with-lapack=flexiblas --with-blas=flexiblas --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --enable-R-shlib --enable-prebuilt-html --enable-R-profiling --enable-memory-profiling --enable-lto
+ tee CONFIGURE.log
configure: WARNING: unrecognized options: --disable-dependency-tracking
checking build system type... powerpc64le-redhat-linux-gnu
checking host system type... powerpc64le-redhat-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
configure: WARNING: --with-system-valgrind-headers is defunct
checking for pwd... /usr/bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /usr/bin/sed
checking for which... /usr/bin/which
checking for less... no
checking for more... /usr/bin/more
checking for gtar... /usr/bin/gtar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... /usr/sbin/install-info
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /usr/bin/gzip
checking for bzip2... /usr/bin/bzip2
using default browser ... /usr/bin/xdg-open
checking for /usr/bin/xdg-open... /usr/bin/xdg-open
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... no
checking for byacc... no
checking for yacc... no
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for powerpc64le-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether gcc needs -traditional... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking how to run the C preprocessor... gcc -E
looking for a modern Fortran compiler
checking for powerpc64le-redhat-linux-gnu-gfortran... no
checking for powerpc64le-redhat-linux-gnu-g95... no
checking for powerpc64le-redhat-linux-gnu-xlf95... no
checking for powerpc64le-redhat-linux-gnu-f95... no
checking for powerpc64le-redhat-linux-gnu-fort... no
checking for powerpc64le-redhat-linux-gnu-ifort... no
checking for powerpc64le-redhat-linux-gnu-ifc... no
checking for powerpc64le-redhat-linux-gnu-efc... no
checking for powerpc64le-redhat-linux-gnu-pgfortran... no
checking for powerpc64le-redhat-linux-gnu-pgf95... no
checking for powerpc64le-redhat-linux-gnu-lf95... no
checking for powerpc64le-redhat-linux-gnu-ftn... no
checking for powerpc64le-redhat-linux-gnu-nagfor... no
checking for powerpc64le-redhat-linux-gnu-xlf90... no
checking for powerpc64le-redhat-linux-gnu-f90... no
checking for powerpc64le-redhat-linux-gnu-pgf90... no
checking for powerpc64le-redhat-linux-gnu-pghpf... no
checking for powerpc64le-redhat-linux-gnu-epcf90... no
checking for powerpc64le-redhat-linux-gnu-g77... no
checking for powerpc64le-redhat-linux-gnu-xlf... no
checking for powerpc64le-redhat-linux-gnu-f77... no
checking for powerpc64le-redhat-linux-gnu-frt... no
checking for powerpc64le-redhat-linux-gnu-pgf77... no
checking for powerpc64le-redhat-linux-gnu-cf77... no
checking for powerpc64le-redhat-linux-gnu-fort77... no
checking for powerpc64le-redhat-linux-gnu-fl32... no
checking for powerpc64le-redhat-linux-gnu-af77... no
checking for gfortran... gfortran
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection can compile C++ code... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc accepts -fvisibility... yes
checking whether g++ accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for powerpc64le-redhat-linux-gnu-gcc... no
checking for powerpc64le-redhat-linux-gnu-objcc... no
checking for powerpc64le-redhat-linux-gnu-objc... no
checking for powerpc64le-redhat-linux-gnu-cc... no
checking for powerpc64le-redhat-linux-gnu-CC... no
checking for powerpc64le-redhat-linux-gnu-clang... no
checking for gcc... gcc
checking whether the compiler supports GNU Objective C... no
checking whether gcc accepts -g... no
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking whether gcc -std=gnu17 is a C17 compiler... yes
checking whether gcc -std=gnu23 is a C23 compiler... no
checking whether gcc -std=gnu2x is a C23 compiler... yes
checking whether gcc -std=gnu90 is a C90 compiler... yes
checking whether gcc -std=gnu99 is a C99 compiler... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert powerpc64le-redhat-linux-gnu file names to powerpc64le-redhat-linux-gnu format... func_convert_file_noop
checking how to convert powerpc64le-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for powerpc64le-redhat-linux-gnu-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for powerpc64le-redhat-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for powerpc64le-redhat-linux-gnu-ar... (cached) ar
checking for archiver @FILE support... @
checking for powerpc64le-redhat-linux-gnu-strip... no
checking for strip... strip
checking for powerpc64le-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for gawk... gawk
checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 12176:  -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory
ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for powerpc64le-redhat-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking for readline/history.h... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking for fcntl.h... yes
checking for glob.h... yes
checking for grp.h... yes
checking for pwd.h... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking for sys/resource.h... yes
checking for sys/select.h... yes
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checking for sys/stat.h... (cached) yes
checking for sys/time.h... (cached) yes
checking for sys/times.h... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking for utime.h... yes
checking for arpa/inet.h... yes
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checking for netdb.h... yes
checking for netinet/in.h... yes
checking for sys/param.h... (cached) yes
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checking for errno.h... yes
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checking for limits.h... yes
checking for locale.h... yes
checking for stdarg.h... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
checking for C stack direction... down
checking size of long double... 16
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc supports -c -o FILE.lo... yes
checking for gcc option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran libraries of gfortran...  -L/usr/lib/gcc/ppc64le-redhat-linux/11 -L/usr/lib/gcc/ppc64le-redhat-linux/11/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/ppc64le-redhat-linux/11/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from gcc... -v
checking for C libraries of gcc...  -L/usr/lib/gcc/ppc64le-redhat-linux/11 -L/usr/lib/gcc/ppc64le-redhat-linux/11/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/ppc64le-redhat-linux/11/../../.. -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc agree on int and double... yes
checking whether gfortran and gcc agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... no
checking for type of 'hidden' Fortran character lengths... size_t
checking for xmkmf... no
checking whether g++  supports C++11 features with -std=gnu++11... yes
checking whether g++  supports C++14 features with -std=gnu++14... yes
checking whether g++  supports C++17 features with -std=gnu++17... yes
checking whether g++  supports C++20 features with -std=gnu++20... yes
checking whether g++  supports C++23 features with -std=gnu++23... yes
checking for g++ -std=gnu++17 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... no
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwnam exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... -ltirpc
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime, gmtime, localtime work correctly in 2020... yes
checking whether mktime sets errno... no
checking whether mktime works correctly after 2037... yes
checking whether mktime works correctly before 1902... yes
checking whether mktime works correctly in 1969... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for dgemm_ in -lflexiblas... yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... no
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checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... yes
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checking whether wcsftime exists and is declared... yes
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checking whether wcwidth exists and is declared... yes
checking whether wcswidth exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... yes
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking for X11/Xmu/Atoms.h... yes
checking for XmuInternAtom in -lXmu... yes
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for /usr/lib64/tclConfig.sh... /usr/lib64/tclConfig.sh
checking for /usr/lib64/tkConfig.sh... /usr/lib64/tkConfig.sh
checking for tcl.h... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking for rpc/types.h... no
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checking for tirpc/rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for tre_regncompb in -ltre... yes
checking for tre/tre.h... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 7.76.1
checking for curl/curl.h... yes
checking if libcurl is >= 7.28.0... yes
checking if libcurl supports https... yes
checking if pkg-config knows about libjpeg... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if pkg-config knows about libpng... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking if pkg-config knows about libtiff... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for lpr... no
checking for lp... no
checking for paperconf... /usr/bin/paperconf
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... (cached) -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... yes
Configuring src/extra/intl directory
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for powerpc64le-redhat-linux-gnu-ranlib... ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... no
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
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checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... no
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory
checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
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configure: WARNING: unrecognized options: --disable-dependency-tracking
R is now configured for powerpc64le-redhat-linux-gnu
  Source directory:            .
  Installation directory:      /usr
  C compiler:                  gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection
  Fortran fixed-form compiler: gfortran  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules
  Default C++ compiler:        g++ -std=gnu++17  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection
  C++11 compiler:              g++ -std=gnu++11  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection
  C++14 compiler:              g++ -std=gnu++14  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection
  C++17 compiler:              g++ -std=gnu++17  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection
  C++20 compiler:              g++ -std=gnu++20  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection
  C++23 compiler:              g++ -std=gnu++23  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection
  Fortran free-form compiler:  gfortran  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules
  Obj-C compiler:	        
  Interfaces supported:        X11, tcltk
  External libraries:          pcre2, readline, BLAS(FlexiBlas), LAPACK(generic), tre, curl
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             shared R library, R profiling, memory profiling, static HTML
  Capabilities skipped:        
  Options not enabled:         shared BLAS
  Recommended packages:        yes
+ grep -A30 'R is now' -
+ cat CONFIGURE.log
+ make V=1
make[1]: Entering directory '/builddir/build/BUILD/R-rc/m4'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/m4'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/tools'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/tools'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/doc'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/doc/html'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/doc/html'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/doc/manual'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/etc'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/etc'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/share'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/share'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/scripts'
creating src/scripts/R.fe
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/scripts'
mkdir -p -- ../../bin
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/scripts'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/scripts'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/include'
mkdir -p -- ../../include
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/include/R_ext'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/include'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/extra'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/extra'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/appl'
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c integrate.c -o integrate.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c interv.c -o interv.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c maxcol.c -o maxcol.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c optim.c -o optim.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pretty.c -o pretty.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c uncmin.c -o uncmin.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dchdc.f -o dchdc.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dchdc.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dpbfa.f -o dpbfa.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dpbfa.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dpbsl.f -o dpbsl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dpbsl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dpoco.f -o dpoco.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dpoco.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dpodi.f -o dpodi.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dpodi.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dpofa.f -o dpofa.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dpofa.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dposl.f -o dposl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dposl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dqrdc.f -o dqrdc.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dqrdc.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dqrdc2.f -o dqrdc2.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dqrdc2.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dqrls.f -o dqrls.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dqrls.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dqrsl.f -o dqrsl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dqrsl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dqrutl.f -o dqrutl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dqrutl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dsvdc.f -o dsvdc.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dsvdc.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dtrco.f -o dtrco.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dtrco.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dtrsl.f -o dtrsl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dtrsl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o  
ranlib libappl.a
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/appl'
#@make install-Linpack
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/appl'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/nmath'
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mlutils.c -o mlutils.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c d1mach.c -o d1mach.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c i1mach.c -o i1mach.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fmax2.c -o fmax2.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fmin2.c -o fmin2.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fprec.c -o fprec.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fround.c -o fround.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ftrunc.c -o ftrunc.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sign.c -o sign.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fsign.c -o fsign.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c imax2.c -o imax2.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c imin2.c -o imin2.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c chebyshev.c -o chebyshev.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c log1p.c -o log1p.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c lgammacor.c -o lgammacor.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gammalims.c -o gammalims.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c stirlerr.c -o stirlerr.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c bd0.c -o bd0.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gamma.c -o gamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c lgamma.c -o lgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c beta.c -o beta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c lbeta.c -o lbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c polygamma.c -o polygamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cospi.c -o cospi.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c bessel_i.c -o bessel_i.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c bessel_j.c -o bessel_j.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c bessel_k.c -o bessel_k.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c bessel_y.c -o bessel_y.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c choose.c -o choose.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c snorm.c -o snorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sexp.c -o sexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dgamma.c -o dgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pgamma.c -o pgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qgamma.c -o qgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rgamma.c -o rgamma.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dbeta.c -o dbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pbeta.c -o pbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qbeta.c -o qbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rbeta.c -o rbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dunif.c -o dunif.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c punif.c -o punif.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qunif.c -o qunif.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c runif.c -o runif.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dnorm.c -o dnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pnorm.c -o pnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qnorm.c -o qnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rnorm.c -o rnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dlnorm.c -o dlnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c plnorm.c -o plnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qlnorm.c -o qlnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rlnorm.c -o rlnorm.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c df.c -o df.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pf.c -o pf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qf.c -o qf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rf.c -o rf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dnf.c -o dnf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dt.c -o dt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pt.c -o pt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qt.c -o qt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rt.c -o rt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dnt.c -o dnt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dchisq.c -o dchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pchisq.c -o pchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qchisq.c -o qchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rchisq.c -o rchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rnchisq.c -o rnchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dbinom.c -o dbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pbinom.c -o pbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qbinom.c -o qbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rbinom.c -o rbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rmultinom.c -o rmultinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dcauchy.c -o dcauchy.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pcauchy.c -o pcauchy.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qcauchy.c -o qcauchy.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rcauchy.c -o rcauchy.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dexp.c -o dexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pexp.c -o pexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qexp.c -o qexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rexp.c -o rexp.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dgeom.c -o dgeom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pgeom.c -o pgeom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qgeom.c -o qgeom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rgeom.c -o rgeom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dhyper.c -o dhyper.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c phyper.c -o phyper.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qhyper.c -o qhyper.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rhyper.c -o rhyper.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dnbinom.c -o dnbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pnbinom.c -o pnbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qnbinom.c -o qnbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rnbinom.c -o rnbinom.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dpois.c -o dpois.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ppois.c -o ppois.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qpois.c -o qpois.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rpois.c -o rpois.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dweibull.c -o dweibull.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pweibull.c -o pweibull.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qweibull.c -o qweibull.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rweibull.c -o rweibull.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dlogis.c -o dlogis.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c plogis.c -o plogis.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qlogis.c -o qlogis.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rlogis.c -o rlogis.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dnchisq.c -o dnchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pnchisq.c -o pnchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qnchisq.c -o qnchisq.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dnbeta.c -o dnbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pnbeta.c -o pnbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qnbeta.c -o qnbeta.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pnf.c -o pnf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pnt.c -o pnt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qnf.c -o qnf.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qnt.c -o qnt.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ptukey.c -o ptukey.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qtukey.c -o qtukey.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c toms708.c -o toms708.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c wilcox.c -o wilcox.o
gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/nmath'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/nmath'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/unix'
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Rembedded.c -o Rembedded.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dynload.c -o dynload.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c system.c -o system.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sys-unix.c -o sys-unix.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sys-std.c -o sys-std.o
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/unix'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/unix'
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -DR_HOME='"/builddir/build/BUILD/R-rc"' \
  -o Rscript ./Rscript.c
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/unix'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/unix'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making clippath.d from clippath.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making flexiblas.d from flexiblas.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making machine.d from machine.c
making main.d from main.c
making mapply.d from mapply.c
making mask.d from mask.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making patterns.d from patterns.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/main'
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c CommandLineArgs.c -o CommandLineArgs.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Rdynload.c -o Rdynload.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Renviron.c -o Renviron.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c RNG.c -o RNG.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c agrep.c -o agrep.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c altclasses.c -o altclasses.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c altrep.c -o altrep.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c apply.c -o apply.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c arithmetic.c -o arithmetic.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c array.c -o array.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c attrib.c -o attrib.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c bind.c -o bind.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c builtin.c -o builtin.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c character.c -o character.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c clippath.c -o clippath.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coerce.c -o coerce.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c colors.c -o colors.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c complex.c -o complex.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c connections.c -o connections.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c context.c -o context.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cum.c -o cum.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dcf.c -o dcf.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c datetime.c -o datetime.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c debug.c -o debug.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c deparse.c -o deparse.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c devices.c -o devices.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dotcode.c -o dotcode.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dounzip.c -o dounzip.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dstruct.c -o dstruct.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c duplicate.c -o duplicate.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c edit.c -o edit.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c engine.c -o engine.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c envir.c -o envir.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c errors.c -o errors.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c eval.c -o eval.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c flexiblas.c -o flexiblas.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c format.c -o format.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gevents.c -o gevents.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gram.c -o gram.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gram-ex.c -o gram-ex.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c graphics.c -o graphics.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c grep.c -o grep.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c identical.c -o identical.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c inlined.c -o inlined.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c inspect.c -o inspect.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c internet.c -o internet.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c iosupport.c -o iosupport.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c lapack.c -o lapack.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c list.c -o list.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c localecharset.c -o localecharset.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c logic.c -o logic.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c machine.c -o machine.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c main.c -o main.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mapply.c -o mapply.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mask.c -o mask.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c match.c -o match.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c memory.c -o memory.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c names.c -o names.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c objects.c -o objects.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c options.c -o options.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c paste.c -o paste.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c patterns.c -o patterns.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c platform.c -o platform.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c plot.c -o plot.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c plot3d.c -o plot3d.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c plotmath.c -o plotmath.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c print.c -o print.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c printarray.c -o printarray.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c printvector.c -o printvector.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c printutils.c -o printutils.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qsort.c -o qsort.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c radixsort.c -o radixsort.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c random.c -o random.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c raw.c -o raw.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c registration.c -o registration.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c relop.c -o relop.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rlocale.c -o rlocale.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c saveload.c -o saveload.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c scan.c -o scan.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c seq.c -o seq.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c serialize.c -o serialize.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sort.c -o sort.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c source.c -o source.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c split.c -o split.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sprintf.c -o sprintf.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c startup.c -o startup.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c subassign.c -o subassign.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c subscript.c -o subscript.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c subset.c -o subset.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c summary.c -o summary.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sysutils.c -o sysutils.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c times.c -o times.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c unique.c -o unique.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c util.c -o util.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c version.c -o version.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c g_alab_her.c -o g_alab_her.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c g_cntrlify.c -o g_cntrlify.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c g_fontdb.c -o g_fontdb.o
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c g_her_glyph.c -o g_her_glyph.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c xxxpr.f -o xxxpr.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: xxxpr.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gcc -shared -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`     -lflexiblas -lgfortran -lm -lquadmath   -lreadline  -ltre -lpcre2-8 -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n  
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/main'
mkdir -p -- /builddir/build/BUILD/R-rc/bin/exec
mkdir -p -- /builddir/build/BUILD/R-rc/lib
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/main'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/main'
gcc  -I/usr/include/tirpc -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Rmain.c -o Rmain.o
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC  -Wl,--export-dynamic -fopenmp  -L"../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o R.bin Rmain.o  -lR 
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/main'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/main'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/main'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/modules'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/internet'
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto  -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto  -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto  -fvisibility=hidden -c internet.c -o internet.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto  -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto  -fvisibility=hidden -c sock.c -o sock.o
gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto  -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR  
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/internet'
mkdir -p -- /builddir/build/BUILD/R-rc/modules
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/internet'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/internet'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/internet'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/lapack'
making Lapack.d from Lapack.c
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/lapack'
gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Lapack.c -o Lapack.o
gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c  ../../main/flexiblas.c -o flexiblas.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o lapack.so  Lapack.o  flexiblas.o -lR  -lflexiblas -lflexiblas -lgfortran -lm -lquadmath
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/lapack'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/lapack'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/lapack'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/lapack'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/X11'
gcc -I/usr/include/libpng16   -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c devX11.c -o devX11.o
gcc -I/usr/include/libpng16   -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rotated.c -o rotated.o
gcc -I/usr/include/libpng16   -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rbitmap.c -o rbitmap.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff  -ljpeg  -lpng16 -lz  -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext  -lX11 -lXt -lXmu  -lR -lm 
gcc -I/usr/include/libpng16   -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dataentry.c -o dataentry.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext  -lX11 -lXt -lXmu  -lR -lm 
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/X11'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/X11'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/X11'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/X11'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/library'
mkdir -p -- ../../library
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/profile'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/translations'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/translations'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/translations'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/base'
building package 'base'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/base'
mkdir -p -- ../../../library/base/demo
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/base'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/base'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tools'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tools'
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making pdscan.d from pdscan.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c text.c -o text.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Rmd5.c -o Rmd5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c md5.c -o md5.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c signals.c -o signals.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c install.c -o install.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c getfmts.c -o getfmts.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c http.c -o http.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gramLatex.c -o gramLatex.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gramRd.c -o gramRd.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pdscan.c -o pdscan.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tools/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tools/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tools'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tools'
installing 'sysdata.rda'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tools'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tools'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/compiler'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/compiler'
byte-compiling package 'compiler'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/compiler'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/compiler'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/base'
byte-compiling package 'base'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/base'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tools'
byte-compiling package 'tools'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tools'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/utils'
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
making hashtab.d from hashtab.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c io.c -o io.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c size.c -o size.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sock.c -o sock.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c utils.c -o utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c hashtab.c -o hashtab.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-rc/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/utils/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/utils/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/utils'
installing 'sysdata.rda'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/utils'
byte-compiling package 'utils'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/utils'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/utils'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/fonts/Roboto
mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static
mkdir -p -- ../../../library/grDevices/icc
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grDevices'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grDevices'
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making clippath.d from clippath.c
making patterns.d from patterns.c
making mask.d from mask.c
making group.d from group.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c axis_scales.c -o axis_scales.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c chull.c -o chull.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c devices.c -o devices.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c stubs.c -o stubs.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c colors.c -o colors.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c patterns.c -o patterns.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c group.c -o group.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c devCairo.c -o devCairo.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c devPicTeX.c -o devPicTeX.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c devPS.c -o devPS.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c devQuartz.c -o devQuartz.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[7]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[8]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src/cairo'
make[9]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src/cairo'
gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cairoBM.c -o cairoBM.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L"../../../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff  -ljpeg  -lpng16 -lz  -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo  -L"../../../../../lib" -lR -lm 
make[9]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src/cairo'
make[6]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grDevices/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grDevices'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grDevices'
byte-compiling package 'grDevices'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grDevices'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grDevices'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/graphics'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/graphics'
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c base.c -o base.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c graphics.c -o graphics.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c par.c -o par.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c plot.c -o plot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c plot3d.c -o plot3d.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c stem.c -o stem.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-rc/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/graphics/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/graphics/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/graphics'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/graphics'
byte-compiling package 'graphics'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/graphics'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/graphics'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/stats'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/stats'
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c kmeans.c -o kmeans.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ansari.c -o ansari.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c bandwidths.c -o bandwidths.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c chisqsim.c -o chisqsim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c d2x2xk.c -o d2x2xk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fexact.c -o fexact.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c kendall.c -o kendall.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ks.c -o ks.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c line.c -o line.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c smooth.c -o smooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c prho.c -o prho.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c swilk.c -o swilk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ksmooth.c -o ksmooth.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c loessc.c -o loessc.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c monoSpl.c -o monoSpl.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c isoreg.c -o isoreg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Srunmed.c -o Srunmed.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dblcen.c -o dblcen.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c distance.c -o distance.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c hclust-utils.c -o hclust-utils.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c nls.c -o nls.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rWishart.c -o rWishart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c HoltWinters.c -o HoltWinters.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c PPsum.c -o PPsum.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c arima.c -o arima.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c burg.c -o burg.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c filter.c -o filter.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mAR.c -o mAR.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pacf.c -o pacf.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c starma.c -o starma.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c port.c -o port.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c family.c -o family.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sbart.c -o sbart.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c approx.c -o approx.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c loglin.c -o loglin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c lowess.c -o lowess.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c massdist.c -o massdist.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c splines.c -o splines.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c lm.c -o lm.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c complete_cases.c -o complete_cases.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cov.c -o cov.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c deriv.c -o deriv.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fft.c -o fft.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fourier.c -o fourier.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c model.c -o model.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c optim.c -o optim.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c optimize.c -o optimize.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c integrate.c -o integrate.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c random.c -o random.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c distn.c -o distn.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c zeroin.c -o zeroin.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rcont.c -o rcont.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fopenmp -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c influence.c -o influence.o
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c bsplvd.f -o bsplvd.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: bsplvd.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c bvalue.f -o bvalue.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: bvalue.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c bvalus.f -o bvalus.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: bvalus.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c loessf.f -o loessf.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: loessf.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c ppr.f -o ppr.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: ppr.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c qsbart.f -o qsbart.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: qsbart.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c sgram.f -o sgram.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: sgram.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c sinerp.f -o sinerp.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: sinerp.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c sslvrg.f -o sslvrg.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: sslvrg.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c stxwx.f -o stxwx.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: stxwx.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c hclust.f -o hclust.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: hclust.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c kmns.f -o kmns.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: kmns.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c eureka.f -o eureka.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: eureka.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c stl.f -o stl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: stl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c portsrc.f -o portsrc.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: portsrc.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
portsrc.f: In function 'i7do_':
portsrc.f:6574:44: warning: 'jcol' may be used uninitialized in this function [-Wmaybe-uninitialized]
 6574 |       INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC,
      |                                            ^
portsrc.f: In function 'dl7mst_':
portsrc.f:5521:51: warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized]
 5521 |       IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
      |                                                   ^
portsrc.f:5658:18: warning: 'psifac' may be used uninitialized in this function [-Wmaybe-uninitialized]
 5658 |               IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310
      |                  ^
portsrc.f: In function 'dg7qts_':
portsrc.f:10329:55: warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized]
10329 |       IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
      |                                                       ^
portsrc.f:10412:72: warning: 'gtsta' may be used uninitialized in this function [-Wmaybe-uninitialized]
10412 |       V(PREDUC) = HALF * (DABS(ALPHAK)*DST*DST + GTSTA)
      |                                                                        ^
portsrc.f:10324:72: warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized]
10324 |       LK = DMAX1(LK, PHI*W(PHIPIN))
      |                                                                        ^
portsrc.f:10466:10: warning: 'kamin' may be used uninitialized in this function [-Wmaybe-uninitialized]
10466 |       IF (KA .GE. KAMIN) GO TO 340
      |          ^
portsrc.f: In function 'dd7dgb_':
portsrc.f:12243:72: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
12243 |       V(NREDUC) = NRED
      |                                                                        ^
portsrc.f:12246:72: warning: 'dnwtst' may be used uninitialized in this function [-Wmaybe-uninitialized]
12246 |       V(DST0) = DNWTST
      |                                                                        ^
portsrc.f: In function 'dg7qsb_':
portsrc.f:2515:72: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2515 |       V(NREDUC) = NRED
      |                                                                        ^
portsrc.f:2514:72: warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized]
 2514 |  60   V(DST0) = DS0
      |                                                                        ^
portsrc.f: In function 'dl7msb_':
portsrc.f:8174:72: warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
 8174 |       V(NREDUC) = NRED
      |                                                                        ^
portsrc.f:8173:72: warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized]
 8173 |  90   V(DST0) = DS0
      |                                                                        ^
portsrc.f: In function 'df7hes_':
portsrc.f:8652:72: warning: 'hes' may be used uninitialized in this function [-Wmaybe-uninitialized]
 8652 |  210  IV(FDH) = HES
      |                                                                        ^
portsrc.f: In function 'dparck_':
portsrc.f:3587:10: warning: 'miv2' may be used uninitialized in this function [-Wmaybe-uninitialized]
 3587 |       IF (LIV .LT. MIV2) GO TO 300
      |          ^
portsrc.f: In function 'drn2gb_':
portsrc.f:12079:72: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
12079 |  270  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
      |                                                                        ^
portsrc.f: In function 'drn2g_':
portsrc.f:458:72: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
  458 |  300  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
      |                                                                        ^
portsrc.f:366:72: warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized]
  366 |       CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1))
      |                                                                        ^
portsrc.f:366:72: warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c lminfl.f -o lminfl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: lminfl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lflexiblas -lflexiblas -lgfortran -lm -lquadmath -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-rc/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/stats/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/stats/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/stats'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/stats'
byte-compiling package 'stats'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/stats'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/stats'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/datasets'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/datasets'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/methods'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/methods'
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c do_substitute_direct.c -o do_substitute_direct.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c slot.c -o slot.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c class_support.c -o class_support.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c tests.c -o tests.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c utils.c -o utils.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-rc/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/methods/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/methods/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/methods'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/methods'
byte-compiling package 'methods'
initializing class and method definitions ... done
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/methods'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/methods'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grid'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grid'
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grid/src'
making clippath.d from clippath.c
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making mask.d from mask.c
making matrix.d from matrix.c
making path.d from path.c
making register.d from register.c
making state.d from state.c
making typeset.d from typeset.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c clippath.c -o clippath.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gpar.c -o gpar.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c grid.c -o grid.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c just.c -o just.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c layout.c -o layout.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mask.c -o mask.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c matrix.c -o matrix.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c path.c -o path.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c register.c -o register.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c state.c -o state.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c typeset.c -o typeset.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c unit.c -o unit.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c util.c -o util.o
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c viewport.c -o viewport.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grid/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grid/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grid'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/grid'
byte-compiling package 'grid'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grid'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/grid'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/splines'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/splines'
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/splines/src'
making splines.d from splines.c
gcc -I"../../../../include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c splines.c -o splines.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o splines.so splines.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-rc/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/splines/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/splines/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/splines'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/splines'
byte-compiling package 'splines'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/splines'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/splines'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/stats4'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/stats4'
byte-compiling package 'stats4'
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make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/stats4'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tcltk'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c tcltk.c -o tcltk.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c tcltk_unix.c -o tcltk_unix.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lm -L../../../../lib -lR
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tcltk/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tcltk/src'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/tcltk'
byte-compiling package 'tcltk'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tcltk'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/tcltk'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/parallel'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/parallel'
make[5]: Entering directory '/builddir/build/BUILD/R-rc/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rngstream.c -o rngstream.o
gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fork.c -o fork.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-rc/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/parallel/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/parallel/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/parallel'
make[4]: Entering directory '/builddir/build/BUILD/R-rc/src/library/parallel'
byte-compiling package 'parallel'
make[4]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/parallel'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/parallel'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library/base'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/base'
installing parsed NAMESPACE files
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/src'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/tests'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/tests'
you should 'make docs' now ...
make[1]: Entering directory '/builddir/build/BUILD/R-rc/doc'
creating doc/NEWS
creating doc/NEWS.pdf
make[2]: Entering directory '/builddir/build/BUILD/R-rc/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[3]: Entering directory '/builddir/build/BUILD/R-rc/doc/html'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/doc/html'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/library'
installing parsed Rd
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/library'
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building/updating package metadata ...
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/library'
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writing package indices
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/library'
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make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/library'
building all R object docs
  converting help for package 'base'
    Arithmetic                              html  
    AsIs                                    html  
    Bessel                                  html  
    CallExternal                            html  
    Colon                                   html  
    Comparison                              html  
    Constants                               html  
    Control                                 html  
    Cstack_info                             html  
    DateTimeClasses                         html  
    Dates                                   html  
    Defunct                                 html  
    Deprecated                              html  
    Encoding                                html  
    EnvVar                                  html  
    Extract                                 html  
    Extract.data.frame                      html  
    Extract.factor                          html  
    Extremes                                html  
    Foreign-internal                        html  
    Foreign                                 html  
    Hyperbolic                              html  
    ISOdatetime                             html  
    Internal                                html  
    InternalMethods                         html  
    La_library                              html  
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    LongVectors                             html  
    MathFun                                 html  
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    NA                                      html  
    NULL                                    html  
    NumericConstants                        html  
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    Random-user                             html  
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    Round                                   html  
    S3method                                html  
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    Startup                                 html  
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    Sys.setFileTime                         html  
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    UseMethod                               html  
    Vectorize                               html  
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    agrep                                   html  
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    assign                                  html  
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    attr                                    html  
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    autoload                                html  
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REDIRECT:topic	 Previous alias or file overwritten by alias: ../../library/base/help/Version.html
REDIRECT:topic	 Previous alias or file overwritten by alias: ../../library/base/help/Platform.html
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    commandArgs                             html  
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    cumsum                                  html  
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    dataframeHelpers                        html  
    date                                    html  
    dcf                                     html  
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    factor                                  html  
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    find.package                            html  
    findInterval                            html  
    force                                   html  
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    formatDL                                html  
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    getDLLRegisteredRoutines                html  
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    getNativeSymbolInfo                     html  
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    is.finite                               html  
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    lapply                                  html  
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    length                                  html  
    lengths                                 html  
    levels                                  html  
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    list2DF                                 html  
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    load                                    html  
    locales                                 html  
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    lower.tri                               html  
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    make.names                              html  
    make.unique                             html  
    mapply                                  html  
    marginSums                              html  
    mat.or.vec                              html  
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    matmult                                 html  
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    numeric                                 html  
    numeric_version                         html  
    octmode                                 html  
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    order                                   html  
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    parse                                   html  
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    path.expand                             html  
    pcre_config                             html  
    pipeOp                                  html  
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    pmatch                                  html  
    polyroot                                html  
    pos.to.env                              html  
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    print.dataframe                         html  
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    prmatrix                                html  
    proc.time                               html  
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    readChar                                html  
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    readRDS                                 html  
    readRenviron                            html  
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    reg.finalizer                           html  
    regex                                   html  
    regmatches                              html  
    rep                                     html  
    replace                                 html  
    rev                                     html  
    rle                                     html  
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    round.POSIXt                            html  
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    row.names                               html  
    rowsum                                  html  
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    serialize                               html  
    setTimeLimit                            html  
    sets                                    html  
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  converting help for package 'tools'
    CRANtools                               html  
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    find_gs_cmd                             html  
    getVignetteInfo                         html  
    loadRdMacros                            html  
    makeLazyLoading                         html  
    make_translations_pkg                   html  
    makevars                                html  
    matchConcordance                        html  
    md5sum                                  html  
    package_dependencies                    html  
    package_native_routine_registration_skeleton
                                            html  
    parseLatex                              html  
    parse_Rd                                html  
    print.via.format                        html  
    pskill                                  html  
    psnice                                  html  
    read.00Index                            html  
    showNonASCII                            html  
    startDynamicHelp                        html  
    testInstalledPackage                    html  
    texi2dvi                                html  
    toHTML                                  html  
    toRd                                    html  
    toTitleCase                             html  
    tools-defunct                           html  
    tools-deprecated                        html  
    tools-package                           html  
    undoc                                   html  
    updatePACKAGES                          html  
    update_pkg_po                           html  
    userdir                                 html  
    vignetteEngine                          html  
    vignetteInfo                            html  
    writePACKAGES                           html  
    xgettext                                html  
  converting help for package 'utils'
    BATCH                                   html  
    COMPILE                                 html  
    DLL.version                             html  
    INSTALL                                 html  
    LINK                                    html  
    PkgUtils                                html  
    Question                                html  
    REMOVE                                  html  
    RHOME                                   html  
    RShowDoc                                html  
    RSiteSearch                             html  
    Rconsole                                html  
    Rprof                                   html  
    Rprofmem                                html  
    Rscript                                 html  
    Rtangle                                 html  
    RweaveLatex                             html  
    SHLIB                                   html  
    Sweave                                  html  
    SweaveSyntConv                          html  
    SweaveUtils                             html  
    URLencode                               html  
    View                                    html  
    adist                                   html  
    alarm                                   html  
    apropos                                 html  
    aregexec                                html  
    arrangeWindows                          html  
    askYesNo                                html  
    aspell-utils                            html  
    aspell                                  html  
    available.packages                      html  
    bibentry                                html  
    browseEnv                               html  
    browseURL                               html  
    browseVignettes                         html  
    bug.report                              html  
    capture.output                          html  
    changedFiles                            html  
    charClass                               html  
    choose.dir                              html  
    choose.files                            html  
    chooseBioCmirror                        html  
    chooseCRANmirror                        html  
    citEntry                                html  
    citation                                html  
    cite                                    html  
    clipboard                               html  
    close.socket                            html  
    combn                                   html  
    compareVersion                          html  
    contrib.url                             html  
    count.fields                            html  
    create.post                             html  
    data                                    html  
    dataentry                               html  
    debugcall                               html  
    debugger                                html  
    demo                                    html  
    download.file                           html  
    download.packages                       html  
    edit                                    html  
    edit.data.frame                         html  
    example                                 html  
    file.edit                               html  
    filetest                                html  
    findCRANmirror                          html  
    findLineNum                             html  
    fix                                     html  
    flush.console                           html  
    format                                  html  
    getAnywhere                             html  
    getFromNamespace                        html  
    getParseData                            html  
    getS3method                             html  
    getWindowsHandle                        html  
    getWindowsHandles                       html  
    glob2rx                                 html  
    globalVariables                         html  
    hasName                                 html  
    hashtab                                 html  
    head                                    html  
    help                                    html  
    help.request                            html  
    help.search                             html  
    help.start                              html  
    hsearch-utils                           html  
    install.packages                        html  
    installed.packages                      html  
    isS3method                              html  
    isS3stdGen                              html  
    localeToCharset                         html  
    ls_str                                  html  
    maintainer                              html  
    make.packages.html                      html  
    make.socket                             html  
    memory.size                             html  
    menu                                    html  
    methods                                 html  
    mirrorAdmin                             html  
    modifyList                              html  
    news                                    html  
    nsl                                     html  
    object.size                             html  
    package.skeleton                        html  
    packageDescription                      html  
    packageName                             html  
    packageStatus                           html  
    page                                    html  
    person                                  html  
    personList                              html  
    process.events                          html  
    prompt                                  html  
    promptData                              html  
    promptPackage                           html  
    rcompgen                                html  
    read.DIF                                html  
    read.fortran                            html  
    read.fwf                                html  
    read.socket                             html  
    read.table                              html  
    readRegistry                            html  
    recover                                 html  
    relist                                  html  
    remove.packages                         html  
    removeSource                            html  
    roman                                   html  
    rtags                                   html  
    savehistory                             html  
    select.list                             html  
    sessionInfo                             html  
    setRepositories                         html  
    setWindowTitle                          html  
    shortPathName                           html  
    sourceutils                             html  
    stack                                   html  
    str                                     html  
    strcapture                              html  
    summaryRprof                            html  
    tar                                     html  
    toLatex                                 html  
    txtProgressBar                          html  
    type.convert                            html  
    untar                                   html  
    unzip                                   html  
    update.packages                         html  
    upgrade                                 html  
    url.show                                html  
    utils-defunct                           html  
    utils-deprecated                        html  
    utils-internal                          html  
    utils-package                           html  
    vignette                                html  
    warnErrList                             html  
    winDialog                               html  
    winMenus                                html  
    winProgressBar                          html  
    winextras                               html  
    write.table                             html  
    zip                                     html  
  converting help for package 'grDevices'
    Devices                                 html  
    Hershey                                 html  
    Japanese                                html  
    Type1Font                               html  
    adjustcolor                             html  
    as.graphicsAnnot                        html  
    as.raster                               html  
    axisTicks                               html  
    boxplot.stats                           html  
    bringToTop                              html  
    cairo                                   html  
    cairoSymbolFont                         html  
    check.options                           html  
    chull                                   html  
    cm                                      html  
    col2rgb                                 html  
    colorRamp                               html  
    colors                                  html  
    contourLines                            html  
    convertColor                            html  
    densCols                                html  
    dev                                     html  
    dev.capabilities                        html  
    dev.capture                             html  
    dev.flush                               html  
    dev.interactive                         html  
    dev.size                                html  
    dev2                                    html  
    dev2bitmap                              html  
    devAskNewPage                           html  
    embedFonts                              html  
    extendrange                             html  
    getGraphicsEvent                        html  
    glyphInfo                               html  
    grDevices-internal                      html  
    grDevices-package                       html  
    grSoftVersion                           html  
    gray                                    html  
    gray.colors                             html  
    hcl                                     html  
    hsv                                     html  
    make.rgb                                html  
    msgWindow                               html  
    n2mfrow                                 html  
    nclass                                  html  
    palette                                 html  
    palettes                                html  
    pdf                                     html  
    pdf.options                             html  
    pictex                                  html  
    plotmath                                html  
    postscript                              html  
    postscriptFonts                         html  
    pretty.Date                             html  
    ps.options                              html  
    quartz                                  html  
    quartzFonts                             html  
    recordGraphics                          html  
    recordplot                              html  
    rgb                                     html  
    rgb2hsv                                 html  
    trans3d                                 html  
    windows                                 html  
    windows.options                         html  
    windowsFonts                            html  
    x11                                     html  
    x11Fonts                                html  
    xfig                                    html  
    xy.coords                               html  
    xyTable                                 html  
    xyz.coords                              html  
    png                                     html  
    savePlot                                html  
  converting help for package 'graphics'
    abline                                  html  
    arrows                                  html  
    assocplot                               html  
    axTicks                                 html  
    axis.POSIXct                            html  
    axis                                    html  
    barplot                                 html  
    box                                     html  
    boxplot                                 html  
    boxplot.matrix                          html  
    bxp                                     html  
    cdplot                                  html  
    clip                                    html  
    contour                                 html  
    convertXY                               html  
    coplot                                  html  
    curve                                   html  
    dotchart                                html  
    filled.contour                          html  
    fourfoldplot                            html  
    frame                                   html  
    graphics-defunct                        html  
    graphics-package                        html  
    grid                                    html  
    hist.POSIXt                             html  
    hist                                    html  
    identify                                html  
    image                                   html  
    layout                                  html  
    legend                                  html  
    lines                                   html  
    locator                                 html  
    matplot                                 html  
    mosaicplot                              html  
    mtext                                   html  
    pairs                                   html  
    panel.smooth                            html  
    par                                     html  
    persp                                   html  
    pie                                     html  
    plot.dataframe                          html  
    plot.default                            html  
    plot.design                             html  
    plot.factor                             html  
    plot.formula                            html  
    plot.raster                             html  
    plot.table                              html  
    plot.window                             html  
    plot.xy                                 html  
    plothistogram                           html  
    points                                  html  
    polygon                                 html  
    polypath                                html  
    rasterImage                             html  
    rect                                    html  
    rug                                     html  
    screen                                  html  
    segments                                html  
    smoothScatter                           html  
    spineplot                               html  
    stars                                   html  
    stem                                    html  
    stripchart                              html  
    strwidth                                html  
    sunflowerplot                           html  
    symbols                                 html  
    text                                    html  
    title                                   html  
    units                                   html  
    xspline                                 html  
    zAxis                                   html  
  converting help for package 'stats'
    AIC                                     html  
    ARMAacf                                 html  
    ARMAtoMA                                html  
    Beta                                    html  
    Binomial                                html  
    Cauchy                                  html  
    Chisquare                               html  
    Distributions                           html  
    Exponential                             html  
    Fdist                                   html  
    GammaDist                               html  
    Geometric                               html  
    HoltWinters                             html  
    Hypergeometric                          html  
    IQR                                     html  
    KalmanLike                              html  
    Logistic                                html  
    Lognormal                               html  
    Multinom                                html  
    NLSstAsymptotic                         html  
    NLSstClosestX                           html  
    NLSstLfAsymptote                        html  
    NLSstRtAsymptote                        html  
    NegBinomial                             html  
    Normal                                  html  
    Pair                                    html  
    Poisson                                 html  
    SSD                                     html  
    SSasymp                                 html  
    SSasympOff                              html  
    SSasympOrig                             html  
    SSbiexp                                 html  
    SSfol                                   html  
    SSfpl                                   html  
    SSgompertz                              html  
    SSlogis                                 html  
    SSmicmen                                html  
    SSweibull                               html  
    SignRank                                html  
    Smirnov                                 html  
    StructTS                                html  
    TDist                                   html  
    Tukey                                   html  
    TukeyHSD                                html  
    Uniform                                 html  
    Weibull                                 html  
    Wilcoxon                                html  
    acf                                     html  
    acf2AR                                  html  
    add1                                    html  
    addmargins                              html  
    aggregate                               html  
    alias                                   html  
    anova                                   html  
    anova.glm                               html  
    anova.lm                                html  
    anova.mlm                               html  
    ansari.test                             html  
    aov                                     html  
    approxfun                               html  
    ar                                      html  
    ar.ols                                  html  
    arima                                   html  
    arima.sim                               html  
    arima0                                  html  
    as.hclust                               html  
    asOneSidedFormula                       html  
    ave                                     html  
    bandwidth                               html  
    bartlett.test                           html  
    binom.test                              html  
    biplot                                  html  
    biplot.princomp                         html  
    birthday                                html  
    box.test                                html  
    cancor                                  html  
    case.names                              html  
    checkMFClasses                          html  
    chisq.test                              html  
    cmdscale                                html  
    coef                                    html  
    complete.cases                          html  
    confint                                 html  
    constrOptim                             html  
    contrast                                html  
    contrasts                               html  
    convolve                                html  
    cophenetic                              html  
    cor                                     html  
    cor.test                                html  
    cov.wt                                  html  
    cpgram                                  html  
    cutree                                  html  
    decompose                               html  
    delete.response                         html  
    dendrapply                              html  
    dendrogram                              html  
    density                                 html  
    deriv                                   html  
    deviance                                html  
    df.residual                             html  
    diffinv                                 html  
    dist                                    html  
    dummy.coef                              html  
    ecdf                                    html  
    eff.aovlist                             html  
    effects                                 html  
    embed                                   html  
    expand.model.frame                      html  
    extractAIC                              html  
    factanal                                html  
    factor.scope                            html  
    family                                  html  
    fft                                     html  
    filter                                  html  
    fisher.test                             html  
    fitted.values                           html  
    fivenum                                 html  
    fligner.test                            html  
    formula                                 html  
    formula.nls                             html  
    friedman.test                           html  
    ftable                                  html  
    ftable.formula                          html  
    getInitial                              html  
    glm                                     html  
    glm.control                             html  
    glm.summaries                           html  
    hclust                                  html  
    heatmap                                 html  
    identify.hclust                         html  
    influence.measures                      html  
    integrate                               html  
    interaction.plot                        html  
    is.empty                                html  
    isoreg                                  html  
    kernapply                               html  
    kernel                                  html  
    kmeans                                  html  
    kruskal.test                            html  
    ks.test                                 html  
    ksmooth                                 html  
    lag                                     html  
    lag.plot                                html  
    line                                    html  
    listof                                  html  
    lm                                      html  
    lm.influence                            html  
    lm.summaries                            html  
    lmfit                                   html  
    loadings                                html  
    loess                                   html  
    loess.control                           html  
    logLik                                  html  
    loglin                                  html  
    lowess                                  html  
    ls.diag                                 html  
    ls.print                                html  
    lsfit                                   html  
    mad                                     html  
    mahalanobis                             html  
    make.link                               html  
    makepredictcall                         html  
    manova                                  html  
    mantelhaen.test                         html  
    mauchly.test                            html  
    mcnemar.test                            html  
    median                                  html  
    medpolish                               html  
    model.extract                           html  
    model.frame                             html  
    model.matrix                            html  
    model.tables                            html  
    monthplot                               html  
    mood.test                               html  
    na.action                               html  
    na.contiguous                           html  
    na.fail                                 html  
    nafns                                   html  
    naprint                                 html  
    nextn                                   html  
    nlm                                     html  
    nlminb                                  html  
    nls                                     html  
    nls.control                             html  
    nobs                                    html  
    numericDeriv                            html  
    offset                                  html  
    oneway.test                             html  
    optim                                   html  
    optimize                                html  
    order.dendrogram                        html  
    p.adjust                                html  
    pairwise.prop.test                      html  
    pairwise.t.test                         html  
    pairwise.table                          html  
    pairwise.wilcox.test                    html  
    plot.HoltWinters                        html  
    plot.acf                                html  
    plot.density                            html  
    plot.isoreg                             html  
    plot.lm                                 html  
    plot.ppr                                html  
    plot.profile.nls                        html  
    plot.spec                               html  
    plot.stepfun                            html  
    plot.ts                                 html  
    poisson.test                            html  
    poly                                    html  
    power                                   html  
    power.anova.test                        html  
    power.prop.test                         html  
    power.t.test                            html  
    pp.test                                 html  
    ppoints                                 html  
    ppr                                     html  
    prcomp                                  html  
    predict.HoltWinters                     html  
    predict                                 html  
    predict.arima                           html  
    predict.glm                             html  
    predict.lm                              html  
    predict.loess                           html  
    predict.nls                             html  
    predict.smooth.spline                   html  
    preplot                                 html  
    princomp                                html  
    print.power.htest                       html  
    print.ts                                html  
    printCoefmat                            html  
    profile                                 html  
    profile.nls                             html  
    proj                                    html  
    prop.test                               html  
    prop.trend.test                         html  
    qqnorm                                  html  
    quade.test                              html  
    quantile                                html  
    r2dtable                                html  
    rWishart                                html  
    read.ftable                             html  
    rect.hclust                             html  
    relevel                                 html  
    reorder.dendrogram                      html  
    reorder.factor                          html  
    replications                            html  
    reshape                                 html  
    residuals                               html  
    runmed                                  html  
    scatter.smooth                          html  
    screeplot                               html  
    sd                                      html  
    se.contrast                             html  
    selfStart                               html  
    setNames                                html  
    shapiro.test                            html  
    sigma                                   html  
    simulate                                html  
    smooth                                  html  
    smooth.spline                           html  
    smoothEnds                              html  
    sortedXyData                            html  
    spec.ar                                 html  
    spec.pgram                              html  
    spec.taper                              html  
    spectrum                                html  
    splinefun                               html  
    start                                   html  
    stat.anova                              html  
    stats-defunct                           html  
    stats-deprecated                        html  
    stats-package                           html  
    step                                    html  
    stepfun                                 html  
    stl                                     html  
    stlmethods                              html  
    summary.aov                             html  
    summary.glm                             html  
    summary.lm                              html  
    summary.manova                          html  
    summary.nls                             html  
    summary.princomp                        html  
    supsmu                                  html  
    symnum                                  html  
    t.test                                  html  
    termplot                                html  
    terms                                   html  
    terms.formula                           html  
    terms.object                            html  
    time                                    html  
    toeplitz                                html  
    ts-methods                              html  
    ts                                      html  
    ts.plot                                 html  
    ts.union                                html  
    tsSmooth                                html  
    tsdiag                                  html  
    tsp                                     html  
    uniroot                                 html  
    update                                  html  
    update.formula                          html  
    var.test                                html  
    varimax                                 html  
    vcov                                    html  
    weighted.mean                           html  
    weighted.residuals                      html  
    weights                                 html  
    wilcox.test                             html  
    window                                  html  
    xtabs                                   html  
    zC                                      html  
  converting help for package 'datasets'
    AirPassengers                           html  
    BJsales                                 html  
    BOD                                     html  
    ChickWeight                             html  
    DNase                                   html  
    EuStockMarkets                          html  
    Formaldehyde                            html  
    HairEyeColor                            html  
    Harman23.cor                            html  
    Harman74.cor                            html  
    Indometh                                html  
    InsectSprays                            html  
    JohnsonJohnson                          html  
    LakeHuron                               html  
    LifeCycleSavings                        html  
    Loblolly                                html  
    Nile                                    html  
    Orange                                  html  
    OrchardSprays                           html  
    PlantGrowth                             html  
    Puromycin                               html  
    Theoph                                  html  
    Titanic                                 html  
    ToothGrowth                             html  
    UCBAdmissions                           html  
    UKDriverDeaths                          html  
    UKLungDeaths                            html  
    UKgas                                   html  
    USAccDeaths                             html  
    USArrests                               html  
    USJudgeRatings                          html  
    USPersonalExpenditure                   html  
    VADeaths                                html  
    WWWusage                                html  
    WorldPhones                             html  
    ability.cov                             html  
    airmiles                                html  
    airquality                              html  
    anscombe                                html  
    attenu                                  html  
    attitude                                html  
    austres                                 html  
    beavers                                 html  
    cars                                    html  
    chickwts                                html  
    co2                                     html  
    crimtab                                 html  
    datasets-package                        html  
    discoveries                             html  
    esoph                                   html  
    euro                                    html  
    eurodist                                html  
    faithful                                html  
    freeny                                  html  
    infert                                  html  
    iris                                    html  
    islands                                 html  
    lh                                      html  
    longley                                 html  
    lynx                                    html  
    morley                                  html  
    mtcars                                  html  
    nhtemp                                  html  
    nottem                                  html  
    npk                                     html  
    occupationalStatus                      html  
    precip                                  html  
    presidents                              html  
    pressure                                html  
    quakes                                  html  
    randu                                   html  
    rivers                                  html  
    rock                                    html  
    sleep                                   html  
    stackloss                               html  
    state                                   html  
    sunspot.month                           html  
    sunspot.year                            html  
    sunspots                                html  
    swiss                                   html  
    treering                                html  
    trees                                   html  
    uspop                                   html  
    volcano                                 html  
    warpbreaks                              html  
    women                                   html  
    zCO2                                    html  
  converting help for package 'methods'
    BasicClasses                            html  
    Classes                                 html  
    Classes_Details                         html  
    Documentation                           html  
    EmptyMethodsList-class                  html  
    EnvironmentClass                        html  
    GenericFunctions                        html  
    Introduction                            html  
    LanguageClasses                         html  
    LinearMethodsList-class                 html  
    MethodDefinition-class                  html  
    MethodSupport                           html  
    MethodWithNext-class                    html  
    Methods                                 html  
    MethodsList-class                       html  
    MethodsList                             html  
    Methods_Details                         html  
    Methods_for_Nongenerics                 html  
    Methods_for_S3                          html  
    NextMethod                              html  
    ObjectsWithPackage-class                html  
    RClassUtils                             html  
    RMethodUtils                            html  
    S3Part                                  html  
    S4groupGeneric                          html  
    SClassExtension-class                   html  
    StructureClasses                        html  
    TraceClasses                            html  
    as                                      html  
    callGeneric                             html  
    canCoerce                               html  
    cbind2                                  html  
    className                               html  
    classRepresentation-class               html  
    classesToAM                             html  
    dotsMethods                             html  
    evalSource                              html  
    findClass                               html  
    findMethods                             html  
    fixPrevious                             html  
    genericFunction-class                   html  
    getClass                                html  
    getMethod                               html  
    getPackageName                          html  
    hasArg                                  html  
    implicitGeneric                         html  
    inheritedSlotNames                      html  
    initialize-methods                      html  
    is                                      html  
    isSealedMethod                          html  
    languageEl                              html  
    localRefClass                           html  
    method.skeleton                         html  
    methodUtilities                         html  
    methods-defunct                         html  
    methods-deprecated                      html  
    methods-package                         html  
    new                                     html  
    nonStructure-class                      html  
    promptClass                             html  
    promptMethods                           html  
    refClass                                html  
    removeMethod                            html  
    representation                          html  
    selectSuperClasses                      html  
    setAs                                   html  
    setClass                                html  
    setClassUnion                           html  
    setGeneric                              html  
    setGroupGeneric                         html  
    setIs                                   html  
    setLoadActions                          html  
    setMethod                               html  
    setOldClass                             html  
    setSClass                               html  
    show                                    html  
    showMethods                             html  
    signature-class                         html  
    slot                                    html  
    stdRefClass                             html  
    substituteDirect                        html  
    testInheritedMethods                    html  
    validObject                             html  
    zBasicFunsList                          html  
  converting help for package 'grid'
    Grid                                    html  
    absolute.size                           html  
    arrow                                   html  
    as.mask                                 html  
    calcStringMetric                        html  
    current.viewport                        html  
    dataViewport                            html  
    depth                                   html  
    deviceLoc                               html  
    drawDetails                             html  
    editDetails                             html  
    editViewport                            html  
    explode                                 html  
    gEdit                                   html  
    gPath                                   html  
    getNames                                html  
    gpar                                    html  
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  converting help for package 'stats4'
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  converting help for package 'tcltk'
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  converting help for package 'compiler'
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  converting help for package 'parallel'
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make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/src/library'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src/library/Recommended'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/library/Recommended'
begin installing recommended package MASS
* installing *source* package 'MASS' ...
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpCD0G6C/R.INSTALL45bd70c456c5/MASS/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c MASS.c -o MASS.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c lqs.c -o lqs.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpCD0G6C/R.INSTALL45bd70c456c5/MASS/src'
installing to /builddir/build/BUILD/R-rc/library/MASS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MASS'
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** building package indices
** testing if installed package can be loaded
* DONE (MASS)
Making 'packages.html' ... done
begin installing recommended package lattice
* installing *source* package 'lattice' ...
** package 'lattice' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpwmsGVJ/R.INSTALL45f8857b542/lattice/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c threeDplot.c -o threeDplot.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpwmsGVJ/R.INSTALL45f8857b542/lattice/src'
installing to /builddir/build/BUILD/R-rc/library/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'lattice'
    finding HTML links ... done
    Lattice                                 html  
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    USMortality                             html  
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    utilities.3d                            html  
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    xyplot.ts                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lattice)
Making 'packages.html' ... done
begin installing recommended package Matrix
* installing *source* package 'Matrix' ...
** package 'Matrix' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c CHMfactor.c -o CHMfactor.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Csparse.c -o Csparse.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Mutils.c -o Mutils.o
Mutils.c: In function 'Mmatrix':
Mutils.c:1337:28: warning: missing braces around initializer [-Wmissing-braces]
 1337 |             Rcomplex zna = { NA_REAL, 0.0 };
      |                            ^
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c chm_common.c -o chm_common.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cs.c -o cs.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cs_utils.c -o cs_utils.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dense.c -o dense.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dgCMatrix.c -o dgCMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dgeMatrix.c -o dgeMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dpoMatrix.c -o dpoMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dppMatrix.c -o dppMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dsCMatrix.c -o dsCMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dsyMatrix.c -o dsyMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dspMatrix.c -o dspMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dtCMatrix.c -o dtCMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dtrMatrix.c -o dtrMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dtpMatrix.c -o dtpMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c factorizations.c -o factorizations.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sparseQR.c -o sparseQR.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sparseVector.c -o sparseVector.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c abIndex.c -o abIndex.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c packedMatrix.c -o packedMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c unpackedMatrix.c -o unpackedMatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sparse.c -o sparse.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c subscript.c -o subscript.o
subscript.c: In function 'RsparseMatrix_subscript_2ary':
subscript.c:1689:33: warning: variable 'doSort' set but not used [-Wunused-but-set-variable]
 1689 |         int i_, j_, j_prev = n, doSort = 0;
      |                                 ^~~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c validity.c -o validity.o
make[4]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/CHOLMOD'
( cd Lib ; make clean )
make[5]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/CHOLMOD/Lib'
make[5]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/CHOLMOD/Lib'
make[4]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/CHOLMOD'
make[4]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/COLAMD'
( cd Source ; make clean )
make[5]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/COLAMD/Source'
make[5]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/COLAMD/Source'
make[4]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/COLAMD'
make[4]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/AMD'
( cd Source ; make clean )
make[5]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/AMD/Source'
make[5]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/AMD/Source'
make[4]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/AMD'
make[4]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/SuiteSparse_config'
make[4]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/SuiteSparse_config'
make[4]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/CHOLMOD'
( cd Lib ; make -f "/builddir/build/BUILD/R-rc/etc/Makeconf" -f Makefile )
make[5]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/CHOLMOD/Lib'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_aat.c -o cholmod_aat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_add.c -o cholmod_add.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_band.c -o cholmod_band.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o
In file included from ../Core/cholmod_change_factor.c:113:
../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   37 |     double *Lx, *Lz ;
      |                  ^~
In file included from ../Core/cholmod_change_factor.c:115:
../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   37 |     double *Lx, *Lz ;
      |                  ^~
../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic':
../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]
  262 |     Int nsuper, xsize, ssize ;
      |                 ^~~~~
../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric':
../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]
  677 |     Int *Lp, *Li, *Lnz ;
      |               ^~
../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]
  677 |     Int *Lp, *Li, *Lnz ;
      |          ^~
../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
  676 |     double *Lx, *Lz ;
      |                  ^~
../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]
  676 |     double *Lx, *Lz ;
      |             ^~
../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric':
../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  824 |     Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;
      |         ^
../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]
  823 |     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
      |                     ^~~
../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]
  823 |     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
      |          ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_common.c -o cholmod_common.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_complex.c -o cholmod_complex.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_copy.c -o cholmod_copy.o
../Core/cholmod_copy.c: In function 'cholmod_copy':
../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]
  275 |     Int nrow, ncol, up, lo, values, diag, astype ;
      |                         ^~
../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]
  275 |     Int nrow, ncol, up, lo, values, diag, astype ;
      |                     ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_dense.c -o cholmod_dense.o
In file included from ../Core/cholmod_dense.c:45:
../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |             ^~
In file included from ../Core/cholmod_dense.c:47:
../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                            ^~
../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                            ^~
../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                  ^~
In file included from ../Core/cholmod_dense.c:49:
../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                            ^~
../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                            ^~
../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                  ^~
../Core/cholmod_dense.c: In function 'cholmod_eye':
../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
  300 |     Int i, n, nz ;
      |               ^~
../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  299 |     double *Xx, *Xz ;
      |                  ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_error.c -o cholmod_error.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_factor.c -o cholmod_factor.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_memory.c -o cholmod_memory.o
../Core/cholmod_memory.c: In function 'cholmod_malloc':
../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable]
  121 |     size_t s ;
      |            ^
../Core/cholmod_memory.c: In function 'cholmod_realloc':
../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable]
  311 |     size_t s ;
      |            ^
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_sparse.c -o cholmod_sparse.o
../Core/cholmod_sparse.c: In function 'cholmod_copy_sparse':
../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  485 |     Int p, pend, j, ncol, packed, nzmax, nz, xtype ;
      |                                   ^~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_transpose.c -o cholmod_transpose.o
In file included from ../Core/cholmod_transpose.c:121:
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                       ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |             ^~
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                       ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |             ^~
In file included from ../Core/cholmod_transpose.c:123:
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:125:
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:128:
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:130:
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
In file included from ../Core/cholmod_transpose.c:133:
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_triplet.c -o cholmod_triplet.o
In file included from ../Core/cholmod_triplet.c:105:
../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                       ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |             ^~
In file included from ../Core/cholmod_triplet.c:107:
../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
In file included from ../Core/cholmod_triplet.c:109:
../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
../Core/cholmod_triplet.c: In function 'cholmod_triplet_to_sparse':
../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
  342 |     Int i, j, p, k, stype, nrow, ncol, nz, ok ;
      |                                            ^~
../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]
  341 |     Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;
      |                    ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Core/cholmod_version.c -o cholmod_version.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Check/cholmod_check.c -o cholmod_check.o
../Check/cholmod_check.c: In function 'check_common':
../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]
  204 |     Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;
      |                                                             ^~~~~~~~~~
../Check/cholmod_check.c: In function 'check_dense':
../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
  950 |     Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;
      |                                     ^~
../Check/cholmod_check.c: In function 'check_factor':
../Check/cholmod_check.c:1497:9: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]
 1497 |         ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;
      |         ^~~
../Check/cholmod_check.c:1495:16: warning: variable 'precise' set but not used [-Wunused-but-set-variable]
 1495 |         count, precise, init_print, ilast, lnz, head, tail, jprev, plast,
      |                ^~~~~~~
../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]
 1494 |     Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,
      |                                      ^~~~~~~~
../Check/cholmod_check.c: In function 'check_factor.constprop.0':
../Check/cholmod_check.c:1496:62: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1496 |         jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol,
      |                                                              ^~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Check/cholmod_read.c -o cholmod_read.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Check/cholmod_write.c -o cholmod_write.o
../Check/cholmod_write.c: In function 'cholmod_write_sparse':
../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]
  366 |     Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,
      |                                 ^~~~~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o
../Cholesky/cholmod_analyze.c: In function 'cholmod_analyze_p2':
../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]
  419 |     Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,
      |                                                                     ^~~~
../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]
  416 |     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
      |                                             ^~~~~~~
../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]
  416 |     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
      |                                   ^~~~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o
../Cholesky/cholmod_factorize.c: In function 'cholmod_factorize_p':
../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  111 |     Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;
      |                                     ^
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o
In file included from ../Cholesky/cholmod_rowfac.c:161:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:163:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:165:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
In file included from ../Cholesky/cholmod_rowfac.c:169:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:171:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:173:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o
In file included from ../Cholesky/cholmod_solve.c:63:
../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   61 |     double *Lx, *Yx, *Yz ;
      |                       ^~
In file included from ../Cholesky/cholmod_solve.c:66:
../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   61 |     double *Lx, *Yx, *Yz ;
      |                       ^~
../Cholesky/cholmod_solve.c: In function 'iperm':
../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]
  334 |     Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;
      |             ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o
In file included from ../MatrixOps/cholmod_sdmult.c:44:
../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                      ^~
../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                            ^~
../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                  ^~
In file included from ../MatrixOps/cholmod_sdmult.c:46:
../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                      ^~
../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                            ^~
../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                  ^~
In file included from ../MatrixOps/cholmod_sdmult.c:48:
../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
In file included from ../MatrixOps/cholmod_sdmult.c:44:
../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:49:43: warning: 'w' may be used uninitialized in this function [-Wmaybe-uninitialized]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                           ^
In file included from ../MatrixOps/cholmod_sdmult.c:48:
../MatrixOps/cholmod_sdmult.c: In function 'cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: 'Wz' may be used uninitialized in this function [-Wmaybe-uninitialized]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:43: warning: 'w' may be used uninitialized in this function [-Wmaybe-uninitialized]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                           ^
In file included from ../MatrixOps/cholmod_sdmult.c:46:
../MatrixOps/t_cholmod_sdmult.c:49:43: warning: 'w' may be used uninitialized in this function [-Wmaybe-uninitialized]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                           ^
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Modify/cholmod_updown.c -o cholmod_updown.o
../Modify/cholmod_updown.c: In function 'cholmod_updown_mask2':
../Modify/cholmod_updown.c:433:40: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]
  433 |         *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;
      |                                        ^~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o
In file included from ../Supernodal/cholmod_super_numeric.c:82:
../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                                 ^~
../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                            ^~
In file included from ../Supernodal/cholmod_super_numeric.c:84:
../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                                 ^~
../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                            ^~
In file included from ../Supernodal/cholmod_super_numeric.c:86:
../Supernodal/t_cholmod_super_numeric.c: In function 'z_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o
In file included from ../Supernodal/cholmod_super_solve.c:26:
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   30 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  238 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
In file included from ../Supernodal/cholmod_super_solve.c:28:
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   30 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  238 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o
../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_super_symbolic2':
../Supernodal/cholmod_super_symbolic.c:562:21: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]
  562 |                 Int totsize ;
      |                     ^~~~~~~
../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable]
  185 |     double max_fraction;
      |            ^~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable]
  184 |     const char* env_max_fraction;
      |                 ^~~~~~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable]
  183 |     size_t max_bytes;
      |            ^~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable]
  182 |     const char* env_max_bytes;
      |                 ^~~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable]
  181 |     const char* env_use_gpu;
      |                 ^~~~~~~~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o
In file included from ../Core/cholmod_change_factor.c:113:
../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   37 |     double *Lx, *Lz ;
      |                  ^~
In file included from ../Core/cholmod_change_factor.c:115:
../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   37 |     double *Lx, *Lz ;
      |                  ^~
../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic':
../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]
  262 |     Int nsuper, xsize, ssize ;
      |                 ^~~~~
../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric':
../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]
  677 |     Int *Lp, *Li, *Lnz ;
      |               ^~
../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]
  677 |     Int *Lp, *Li, *Lnz ;
      |          ^~
../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
  676 |     double *Lx, *Lz ;
      |                  ^~
../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]
  676 |     double *Lx, *Lz ;
      |             ^~
../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric':
../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  824 |     Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;
      |         ^
../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]
  823 |     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
      |                     ^~~
../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]
  823 |     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
      |          ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o
../Core/cholmod_copy.c: In function 'cholmod_l_copy':
../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]
  275 |     Int nrow, ncol, up, lo, values, diag, astype ;
      |                         ^~
../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]
  275 |     Int nrow, ncol, up, lo, values, diag, astype ;
      |                     ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o
In file included from ../Core/cholmod_dense.c:45:
../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |             ^~
In file included from ../Core/cholmod_dense.c:47:
../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                            ^~
../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                            ^~
../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                  ^~
In file included from ../Core/cholmod_dense.c:49:
../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                            ^~
../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                            ^~
../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                  ^~
../Core/cholmod_dense.c: In function 'cholmod_l_eye':
../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
  300 |     Int i, n, nz ;
      |               ^~
../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  299 |     double *Xx, *Xz ;
      |                  ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o
../Core/cholmod_memory.c: In function 'cholmod_l_malloc':
../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable]
  121 |     size_t s ;
      |            ^
../Core/cholmod_memory.c: In function 'cholmod_l_realloc':
../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable]
  311 |     size_t s ;
      |            ^
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o
../Core/cholmod_sparse.c: In function 'cholmod_l_copy_sparse':
../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  485 |     Int p, pend, j, ncol, packed, nzmax, nz, xtype ;
      |                                   ^~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o
In file included from ../Core/cholmod_transpose.c:121:
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                       ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |             ^~
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                       ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |             ^~
In file included from ../Core/cholmod_transpose.c:123:
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:125:
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:128:
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:130:
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
In file included from ../Core/cholmod_transpose.c:133:
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o
In file included from ../Core/cholmod_triplet.c:105:
../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                       ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |             ^~
In file included from ../Core/cholmod_triplet.c:107:
../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
In file included from ../Core/cholmod_triplet.c:109:
../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
../Core/cholmod_triplet.c: In function 'cholmod_l_triplet_to_sparse':
../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
  342 |     Int i, j, p, k, stype, nrow, ncol, nz, ok ;
      |                                            ^~
../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]
  341 |     Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;
      |                    ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o
../Check/cholmod_check.c: In function 'check_common':
../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]
  204 |     Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;
      |                                                             ^~~~~~~~~~
../Check/cholmod_check.c: In function 'check_dense':
../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
  950 |     Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;
      |                                     ^~
../Check/cholmod_check.c: In function 'check_factor':
../Check/cholmod_check.c:1497:9: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]
 1497 |         ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;
      |         ^~~
../Check/cholmod_check.c:1495:16: warning: variable 'precise' set but not used [-Wunused-but-set-variable]
 1495 |         count, precise, init_print, ilast, lnz, head, tail, jprev, plast,
      |                ^~~~~~~
../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]
 1494 |     Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,
      |                                      ^~~~~~~~
../Check/cholmod_check.c: In function 'check_factor.constprop.0':
../Check/cholmod_check.c:1496:62: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1496 |         jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol,
      |                                                              ^~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o
../Check/cholmod_write.c: In function 'cholmod_l_write_sparse':
../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]
  366 |     Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,
      |                                 ^~~~~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o
../Cholesky/cholmod_analyze.c: In function 'cholmod_l_analyze_p2':
../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]
  419 |     Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,
      |                                                                     ^~~~
../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]
  416 |     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
      |                                             ^~~~~~~
../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]
  416 |     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
      |                                   ^~~~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o
../Cholesky/cholmod_factorize.c: In function 'cholmod_l_factorize_p':
../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  111 |     Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;
      |                                     ^
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o
In file included from ../Cholesky/cholmod_rowfac.c:161:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:163:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:165:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
In file included from ../Cholesky/cholmod_rowfac.c:169:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:171:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:173:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o
In file included from ../Cholesky/cholmod_solve.c:63:
../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   61 |     double *Lx, *Yx, *Yz ;
      |                       ^~
In file included from ../Cholesky/cholmod_solve.c:66:
../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   61 |     double *Lx, *Yx, *Yz ;
      |                       ^~
../Cholesky/cholmod_solve.c: In function 'iperm':
../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]
  334 |     Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;
      |             ^~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o
In file included from ../MatrixOps/cholmod_sdmult.c:44:
../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                      ^~
../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                            ^~
../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                  ^~
In file included from ../MatrixOps/cholmod_sdmult.c:46:
../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                      ^~
../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                            ^~
../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                  ^~
In file included from ../MatrixOps/cholmod_sdmult.c:48:
../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
In file included from ../MatrixOps/cholmod_sdmult.c:44:
../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:49:43: warning: 'w' may be used uninitialized in this function [-Wmaybe-uninitialized]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                           ^
In file included from ../MatrixOps/cholmod_sdmult.c:48:
../MatrixOps/cholmod_sdmult.c: In function 'cholmod_l_sdmult':
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: 'Wz' may be used uninitialized in this function [-Wmaybe-uninitialized]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:43: warning: 'w' may be used uninitialized in this function [-Wmaybe-uninitialized]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                           ^
In file included from ../MatrixOps/cholmod_sdmult.c:46:
../MatrixOps/t_cholmod_sdmult.c:49:43: warning: 'w' may be used uninitialized in this function [-Wmaybe-uninitialized]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                           ^
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o
../Modify/cholmod_updown.c: In function 'cholmod_l_updown_mask2':
../Modify/cholmod_updown.c:433:40: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]
  433 |         *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;
      |                                        ^~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o
In file included from ../Supernodal/cholmod_super_numeric.c:82:
../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                                 ^~
../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                            ^~
In file included from ../Supernodal/cholmod_super_numeric.c:84:
../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                                 ^~
../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                            ^~
In file included from ../Supernodal/cholmod_super_numeric.c:86:
../Supernodal/t_cholmod_super_numeric.c: In function 'z_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o
In file included from ../Supernodal/cholmod_super_solve.c:26:
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   30 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  238 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
In file included from ../Supernodal/cholmod_super_solve.c:28:
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   30 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  238 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o
../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_l_super_symbolic2':
../Supernodal/cholmod_super_symbolic.c:562:21: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]
  562 |                 Int totsize ;
      |                     ^~~~~~~
../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable]
  185 |     double max_fraction;
      |            ^~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable]
  184 |     const char* env_max_fraction;
      |                 ^~~~~~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable]
  183 |     size_t max_bytes;
      |            ^~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable]
  182 |     const char* env_max_bytes;
      |                 ^~~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable]
  181 |     const char* env_use_gpu;
      |                 ^~~~~~~~~~~
ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o 
make[5]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/CHOLMOD/Lib'
make[4]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/CHOLMOD'
make[4]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/COLAMD'
( cd Source ; make -f "/builddir/build/BUILD/R-rc/etc/Makeconf" -f Makefile lib )
make[5]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/COLAMD/Source'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c colamd.c -o colamd.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c colamd.c -o colamd_l.o
ar -rucs ../../COLAMD.a colamd.o colamd_l.o
make[5]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/COLAMD/Source'
make[4]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/COLAMD'
make[4]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/AMD'
( cd Source ; make -f "/builddir/build/BUILD/R-rc/etc/Makeconf" -f Makefile lib )
make[5]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/AMD/Source'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_1.c -o amd_i_1.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_1.c -o amd_l_1.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_2.c -o amd_i_2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_2.c -o amd_l_2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_order.c -o amd_i_order.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_order.c -o amd_l_order.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_control.c -o amd_i_control.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_control.c -o amd_l_control.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_info.c -o amd_i_info.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_info.c -o amd_l_info.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o
ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o
make[5]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/AMD/Source'
make[4]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/AMD'
make[4]: Entering directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/SuiteSparse_config'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -DNTIMER  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c SuiteSparse_config.c -o SuiteSparse_config.o
ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o
make[4]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src/SuiteSparse_config'
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o Matrix.so CHMfactor.o Csparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o sparseQR.o sparseVector.o abIndex.o packedMatrix.o unpackedMatrix.o sparse.o subscript.o validity.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -lflexiblas -lflexiblas -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpYwMNkt/R.INSTALL46334bc18538/Matrix/src'
installing to /builddir/build/BUILD/R-rc/library/Matrix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix'
Creating a generic function for 'drop' from package 'base' in package 'Matrix'
Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix'
Creating a generic function for 'unname' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csc","RsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.coo","RsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","sparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","sparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","sparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"Matrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"Matrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"Matrix","matrix.coo"': no definition for class "matrix.coo"
Creating a generic function for 'chol2inv' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix'
Creating a generic function for 'colSums' from package 'base' in package 'Matrix'
Creating a generic function for 'colMeans' from package 'base' in package 'Matrix'
Creating a generic function for 'rowSums' from package 'base' in package 'Matrix'
Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix'
Creating a generic function for 'diag' from package 'base' in package 'Matrix'
Creating a generic function for 'diag<-' from package 'base' in package 'Matrix'
Creating a generic function for 'crossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"graphAM","TsparseMatrix"': no definition for class "graphAM"
in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","RsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","TsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","sparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"Matrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"Matrix","graph"': no definition for class "graph"
Creating a generic function for 'norm' from package 'base' in package 'Matrix'
Creating a generic function for 'rcond' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'rcond' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
Creating a generic function for 'toeplitz' from 'stats' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
Creating a generic function for 'which' from package 'base' in package 'Matrix'
** help
*** installing help indices
  converting help for package 'Matrix'
    finding HTML links ... done
    BunchKaufman-methods                    html  
    CAex                                    html  
    CHMfactor-class                         html  
    Cholesky-class                          html  
    Cholesky                                html  
    CsparseMatrix-class                     html  
    Diagonal                                html  
    Hilbert                                 html  
    KNex                                    html  
    KhatriRao                               html  
    LU-class                                html  
    Matrix-class                            html  
    Matrix-defunct                          html  
    Matrix-deprecated                       html  
    Matrix                                  html  
    MatrixClass                             html  
    MatrixFactorization-class               html  
    RsparseMatrix-class                     html  
    Schur-class                             html  
    Schur                                   html  
    SparseM-conv                            html  
    Subassign-methods                       html  
    TsparseMatrix-class                     html  
    USCounties                              html  
    Xtrct-methods                           html  
    abIndex-class                           html  
    abIseq                                  html  
    all-methods                             html  
    all.equal-methods                       html  
    atomicVector-class                      html  
    band                                    html  
    bandSparse                              html  
    bdiag                                   html  
    boolean-matprod                         html  
    cBind                                   html  
    chol                                    html  
    chol2inv-methods                        html  
    colSums                                 html  
    compMatrix-class                        html  
    condest                                 html  
    dMatrix-class                           html  
    ddenseMatrix-class                      html  
    ddiMatrix-class                         html  
    denseMatrix-class                       html  
    dgCMatrix-class                         html  
    dgRMatrix-class                         html  
    dgTMatrix-class                         html  
    dgeMatrix-class                         html  
    diagU2N                                 html  
    diagonalMatrix-class                    html  
    dimScale                                html  
    dmperm                                  html  
    dpoMatrix-class                         html  
    drop0                                   html  
    dsCMatrix-class                         html  
    dsRMatrix-class                         html  
    dsparseMatrix-class                     html  
    dsyMatrix-class                         html  
    dtCMatrix-class                         html  
    dtRMatrix-class-def                     html  
    dtpMatrix-class                         html  
    dtrMatrix-class                         html  
    expand                                  html  
    expm                                    html  
    externalFormats                         html  
    facmul                                  html  
    fastMisc                                html  
    forceSymmetric                          html  
    formatSparseM                           html  
    generalMatrix-class                     html  
    graph2T                                 html  
    image-methods                           html  
    indMatrix-class                         html  
    index-class                             html  
    invPerm                                 html  
    is.na-methods                           html  
    is.null.DN                              html  
    isSymmetric-methods                     html  
    isTriangular                            html  
    kronecker-methods                       html  
    ldenseMatrix-class                      html  
    ldiMatrix-class                         html  
    lgeMatrix-class                         html  
    lsparseMatrix-classes                   html  
    lsyMatrix-class                         html  
    ltrMatrix-class                         html  
    lu                                      html  
    mat2triplet                             html  
    matrix-products                         html  
    nMatrix-class                           html  
    ndenseMatrix-class                      html  
    nearPD                                  html  
    ngeMatrix-class                         html  
    nnzero                                  html  
    norm                                    html  
    nsparseMatrix-classes                   html  
    nsyMatrix-class                         html  
    ntrMatrix-class                         html  
    number-class                            html  
    pMatrix-class                           html  
    packedMatrix-class                      html  
    printSpMatrix                           html  
    qr-methods                              html  
    rankMatrix                              html  
    rcond                                   html  
    rep2abI                                 html  
    replValue-class                         html  
    rleDiff-class                           html  
    rsparsematrix                           html  
    solve-methods                           html  
    spMatrix                                html  
    sparse.model.matrix                     html  
    sparseLU-class                          html  
    sparseMatrix-class                      html  
    sparseMatrix                            html  
    sparseQR-class                          html  
    sparseVector-class                      html  
    sparseVector                            html  
    symmetricMatrix-class                   html  
    symmpart                                html  
    triangularMatrix-class                  html  
    uniqTsparse                             html  
    unpack                                  html  
    unpackedMatrix-class                    html  
    unused-classes                          html  
    updown                                  html  
    wrld_1deg                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Matrix)
Making 'packages.html' ... done
begin installing recommended package nlme
* installing *source* package 'nlme' ...
** package 'nlme' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
using Fortran compiler: 'GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/Rtmpz6oZuB/R.INSTALL48bb26aef231/nlme/src'
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c chol.f -o chol.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: chol.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c corStruct.c -o corStruct.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gnls.c -o gnls.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c matrix.c -o matrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c nlOptimizer.c -o nlOptimizer.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c nlme.c -o nlme.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c nlmefit.c -o nlmefit.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pdMat.c -o pdMat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fvisibility=hidden -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pythag.c -o pythag.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c rs.f -o rs.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: rs.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/Rtmpz6oZuB/R.INSTALL48bb26aef231/nlme/src'
installing to /builddir/build/BUILD/R-rc/library/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nlme'
    finding HTML links ... done
    ACF                                     html  
    ACF.gls                                 html  
    ACF.lme                                 html  
    Alfalfa                                 html  
    Assay                                   html  
    BodyWeight                              html  
    Cefamandole                             html  
    Coef                                    html  
    Covariate                               html  
    Covariate.varFunc                       html  
    Dialyzer                                html  
    Dim                                     html  
    Dim.corSpatial                          html  
    Dim.corStruct                           html  
    Dim.pdMat                               html  
    Earthquake                              html  
    Extract.pdMat                           html  
    Fatigue                                 html  
    Gasoline                                html  
    Glucose                                 html  
    Glucose2                                html  
    Gun                                     html  
    IGF                                     html  
    Initialize                              html  
    Initialize.corStruct                    html  
    Initialize.glsStruct                    html  
    Initialize.lmeStruct                    html  
    Initialize.reStruct                     html  
    Initialize.varFunc                      html  
    LDEsysMat                               html  
    Machines                                html  
    MathAchSchool                           html  
    MathAchieve                             html  
    Matrix                                  html  
    Matrix.pdMat                            html  
    Matrix.reStruct                         html  
    Meat                                    html  
    Milk                                    html  
    Muscle                                  html  
    Names                                   html  
    Names.formula                           html  
    Names.pdBlocked                         html  
    Names.pdMat                             html  
    Names.reStruct                          html  
    Nitrendipene                            html  
    Oats                                    html  
    Orthodont                               html  
    Ovary                                   html  
    Oxboys                                  html  
    Oxide                                   html  
    PBG                                     html  
    Phenobarb                               html  
    Pixel                                   html  
    Quinidine                               html  
    Rail                                    html  
    RatPupWeight                            html  
    Relaxin                                 html  
    Remifentanil                            html  
    Soybean                                 html  
    Spruce                                  html  
    Tetracycline1                           html  
    Tetracycline2                           html  
    VarCorr                                 html  
    Variogram                               html  
    Variogram.corExp                        html  
    Variogram.corGaus                       html  
    Variogram.corLin                        html  
    Variogram.corRatio                      html  
    Variogram.corSpatial                    html  
    Variogram.corSpher                      html  
    Variogram.default                       html  
    Variogram.gls                           html  
    Variogram.lme                           html  
    Wafer                                   html  
    Wheat                                   html  
    Wheat2                                  html  
    allCoef                                 html  
    anova.gls                               html  
    anova.lme                               html  
    as.matrix.corStruct                     html  
    as.matrix.pdMat                         html  
    as.matrix.reStruct                      html  
    asOneFormula                            html  
    asTable                                 html  
    augPred                                 html  
    balancedGrouped                         html  
    bdf                                     html  
    coef.corStruct                          html  
    coef.gnls                               html  
    coef.lmList                             html  
    coef.lme                                html  
    coef.modelStruct                        html  
    coef.pdMat                              html  
    coef.reStruct                           html  
    coef.varFunc                            html  
    collapse                                html  
    collapse.groupedData                    html  
    compareFits                             html  
    comparePred                             html  
    corAR1                                  html  
    corARMA                                 html  
    corCAR1                                 html  
    corClasses                              html  
    corCompSymm                             html  
    corExp                                  html  
    corFactor                               html  
    corFactor.corStruct                     html  
    corGaus                                 html  
    corLin                                  html  
    corMatrix                               html  
    corMatrix.corStruct                     html  
    corMatrix.pdMat                         html  
    corMatrix.reStruct                      html  
    corNatural                              html  
    corRatio                                html  
    corSpatial                              html  
    corSpher                                html  
    corSymm                                 html  
    ergoStool                               html  
    fdHess                                  html  
    fitted.glsStruct                        html  
    fitted.gnlsStruct                       html  
    fitted.lmList                           html  
    fitted.lme                              html  
    fitted.lmeStruct                        html  
    fitted.nlmeStruct                       html  
    fixed.effects                           html  
    fixef.lmList                            html  
    formula.pdBlocked                       html  
    formula.pdMat                           html  
    formula.reStruct                        html  
    gapply                                  html  
    getCovariate                            html  
    getCovariate.corStruct                  html  
    getCovariate.data.frame                 html  
    getCovariate.varFunc                    html  
    getCovariateFormula                     html  
    getData                                 html  
    getData.gls                             html  
    getData.lmList                          html  
    getData.lme                             html  
    getGroups                               html  
    getGroups.corStruct                     html  
    getGroups.data.frame                    html  
    getGroups.gls                           html  
    getGroups.lmList                        html  
    getGroups.lme                           html  
    getGroups.varFunc                       html  
    getGroupsFormula                        html  
    getResponse                             html  
    getResponseFormula                      html  
    getVarCov                               html  
    gls-internal                            html  
    gls                                     html  
    glsControl                              html  
    glsObject                               html  
    glsStruct                               html  
    gnls                                    html  
    gnlsControl                             html  
    gnlsObject                              html  
    gnlsStruct                              html  
    groupedData                             html  
    gsummary                                html  
    intervals                               html  
    intervals.gls                           html  
    intervals.lmList                        html  
    intervals.lme                           html  
    isBalanced                              html  
    isInitialized                           html  
    lmList                                  html  
    lmList.groupedData                      html  
    lme                                     html  
    lme.groupedData                         html  
    lme.lmList                              html  
    lmeControl                              html  
    lmeObject                               html  
    lmeStruct                               html  
    logDet                                  html  
    logDet.corStruct                        html  
    logDet.pdMat                            html  
    logDet.reStruct                         html  
    logLik.corStruct                        html  
    logLik.glsStruct                        html  
    logLik.gnls                             html  
    logLik.gnlsStruct                       html  
    logLik.lmList                           html  
    logLik.lme                              html  
    logLik.lmeStruct                        html  
    logLik.reStruct                         html  
    logLik.varFunc                          html  
    model.matrix.reStruct                   html  
    needUpdate                              html  
    needUpdate.modelStruct                  html  
    nlme-deprecated                         html  
    nlme                                    html  
    nlme.nlsList                            html  
    nlmeControl                             html  
    nlmeObject                              html  
    nlmeStruct                              html  
    nlsList                                 html  
    nlsList.selfStart                       html  
    pairs.compareFits                       html  
    pairs.lmList                            html  
    pairs.lme                               html  
    pdBlocked                               html  
    pdClasses                               html  
    pdCompSymm                              html  
    pdConstruct                             html  
    pdConstruct.pdBlocked                   html  
    pdDiag                                  html  
    pdFactor                                html  
    pdFactor.reStruct                       html  
    pdIdent                                 html  
    pdLogChol                               html  
    pdMat                                   html  
    pdMatrix                                html  
    pdMatrix.reStruct                       html  
    pdNatural                               html  
    pdSymm                                  html  
    phenoModel                              html  
    plot.ACF                                html  
    plot.Variogram                          html  
    plot.augPred                            html  
    plot.compareFits                        html  
    plot.gls                                html  
    plot.intervals.lmList                   html  
    plot.lmList                             html  
    plot.lme                                html  
    plot.nffGroupedData                     html  
    plot.nfnGroupedData                     html  
    plot.nmGroupedData                      html  
    plot.ranef.lmList                       html  
    plot.ranef.lme                          html  
    pooledSD                                html  
    predict.gls                             html  
    predict.gnls                            html  
    predict.lmList                          html  
    predict.lme                             html  
    predict.nlme                            html  
    print.summary.pdMat                     html  
    print.varFunc                           html  
    qqnorm.gls                              html  
    qqnorm.lme                              html  
    quinModel                               html  
    random.effects                          html  
    ranef.lmList                            html  
    ranef.lme                               html  
    reStruct                                html  
    recalc                                  html  
    recalc.corStruct                        html  
    recalc.modelStruct                      html  
    recalc.reStruct                         html  
    recalc.varFunc                          html  
    residuals.gls                           html  
    residuals.glsStruct                     html  
    residuals.gnlsStruct                    html  
    residuals.lmList                        html  
    residuals.lme                           html  
    residuals.lmeStruct                     html  
    residuals.nlmeStruct                    html  
    simulate.lme                            html  
    solve.pdMat                             html  
    solve.reStruct                          html  
    splitFormula                            html  
    summary.corStruct                       html  
    summary.gls                             html  
    summary.lmList                          html  
    summary.lme                             html  
    summary.modelStruct                     html  
    summary.nlsList                         html  
    summary.pdMat                           html  
    summary.varFunc                         html  
    update.modelStruct                      html  
    update.varFunc                          html  
    varClasses                              html  
    varComb                                 html  
    varConstPower                           html  
    varConstProp                            html  
    varExp                                  html  
    varFixed                                html  
    varFunc                                 html  
    varIdent                                html  
    varPower                                html  
    varWeights                              html  
    varWeights.glsStruct                    html  
    varWeights.lmeStruct                    html  
** building package indices
** testing if installed package can be loaded
* DONE (nlme)
Making 'packages.html' ... done
begin installing recommended package survival
* installing *source* package 'survival' ...
** package 'survival' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/Rtmp9PbFYm/R.INSTALL4912b4c4938/survival/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c agexact.c -o agexact.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c agfit4.c -o agfit4.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c agfit5.c -o agfit5.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c agmart.c -o agmart.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c agmart3.c -o agmart3.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c agscore2.c -o agscore2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c agsurv4.c -o agsurv4.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c agsurv5.c -o agsurv5.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cdecomp.c -o cdecomp.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c chinv2.c -o chinv2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c chinv3.c -o chinv3.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cholesky2.c -o cholesky2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cholesky3.c -o cholesky3.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cholesky5.c -o cholesky5.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c chsolve2.c -o chsolve2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c chsolve3.c -o chsolve3.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c chsolve5.c -o chsolve5.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c collapse.c -o collapse.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c concordance1.c -o concordance1.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c concordance3.c -o concordance3.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c concordance5.c -o concordance5.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c cox_Rcallback.c -o cox_Rcallback.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxcount1.c -o coxcount1.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxdetail.c -o coxdetail.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxexact.c -o coxexact.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxfit5.c -o coxfit5.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxfit6.c -o coxfit6.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxmart.c -o coxmart.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxmart2.c -o coxmart2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxph_wtest.c -o coxph_wtest.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxsafe.c -o coxsafe.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxscho.c -o coxscho.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxscore2.c -o coxscore2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxsurv1.c -o coxsurv1.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxsurv2.c -o coxsurv2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxsurv3.c -o coxsurv3.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxsurv4.c -o coxsurv4.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dmatrix.c -o dmatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c doloop.c -o doloop.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fastkm.c -o fastkm.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c finegray.c -o finegray.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gchol.c -o gchol.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c multicheck.c -o multicheck.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c norisk.c -o norisk.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pyears1.c -o pyears1.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pyears2.c -o pyears2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pyears3b.c -o pyears3b.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pystep.c -o pystep.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survConcordance.c -o survConcordance.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survdiff2.c -o survdiff2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survfit4.c -o survfit4.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survfitci.c -o survfitci.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survfitkm.c -o survfitkm.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survfitresid.c -o survfitresid.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survpenal.c -o survpenal.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survreg6.c -o survreg6.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survreg7.c -o survreg7.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survregc1.c -o survregc1.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survregc2.c -o survregc2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c survsplit.c -o survsplit.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c tmerge.c -o tmerge.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c zph1.c -o zph1.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c zph2.c -o zph2.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o zph1.o zph2.o -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/Rtmp9PbFYm/R.INSTALL4912b4c4938/survival/src'
installing to /builddir/build/BUILD/R-rc/library/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'survival'
    finding HTML links ... done
    Surv                                    html  
    Surv2                                   html  
    Surv2data                               html  
    Survmethods                             html  
    aareg                                   html  
    aeqSurv                                 html  
    aggregate.survfit                       html  
    agreg.fit                               html  
    aml                                     html  
    anova.coxph                             html  
    attrassign                              html  
    basehaz                                 html  
    bladder                                 html  
    blogit                                  html  
    cch                                     html  
    cgd                                     html  
    cgd0                                    html  
    cipoisson                               html  
    clogit                                  html  
    cluster                                 html  
    colon                                   html  
    concordance                             html  
    concordancefit                          html  
    cox.zph                                 html  
    coxph                                   html  
    coxph.control                           html  
    coxph.detail                            html  
    coxph.object                            html  
    coxph.wtest                             html  
    coxphms.object                          html  
    coxsurv.fit                             html  
    diabetic                                html  
    dsurvreg                                html  
    finegray                                html  
    flchain                                 html  
    frailty                                 html  
    gbsg                                    html  
    heart                                   html  
    is.ratetable                            html  
    kidney                                  html  
    levels.Surv                             html  
    lines.survfit                           html  
    logLik.coxph                            html  
    logan                                   html  
    lung                                    html  
    mgus                                    html  
    mgus2                                   html  
    model.frame.coxph                       html  
    model.matrix.coxph                      html  
    myeloid                                 html  
    myeloma                                 html  
    nafld                                   html  
    neardate                                html  
    nsk                                     html  
    nwtco                                   html  
    ovarian                                 html  
    pbc                                     html  
    pbcseq                                  html  
    plot.aareg                              html  
    plot.cox.zph                            html  
    plot.survfit                            html  
    predict.coxph                           html  
    predict.survreg                         html  
    print.aareg                             html  
    print.summary.coxph                     html  
    print.summary.survexp                   html  
    print.summary.survfit                   html  
    print.survfit                           html  
    pseudo                                  html  
    pspline                                 html  
    pyears                                  html  
    quantile.survfit                        html  
    ratetable                               html  
    ratetableDate                           html  
    rats                                    html  
    rats2                                   html  
    reliability                             html  
    residuals.coxph                         html  
    residuals.survfit                       html  
    residuals.survreg                       html  
    retinopathy                             html  
    rhDNase                                 html  
    ridge                                   html  
    rotterdam                               html  
    royston                                 html  
    rttright                                html  
    solder                                  html  
    stanford2                               html  
    statefig                                html  
    strata                                  html  
    summary.aareg                           html  
    summary.coxph                           html  
    summary.pyears                          html  
    summary.survexp                         html  
    summary.survfit                         html  
    survSplit                               html  
    survcheck                               html  
    survcondense                            html  
    survdiff                                html  
    survexp                                 html  
    survexp.fit                             html  
    survexp.object                          html  
    survexp.us                              html  
    survfit                                 html  
    survfit.coxph                           html  
    survfit.formula                         html  
    survfit.matrix                          html  
    survfit.object                          html  
    survfit0                                html  
    survfitcoxph.fit                        html  
    survival-deprecated                     html  
    survival-internal                       html  
    survobrien                              html  
    survreg                                 html  
    survreg.control                         html  
    survreg.distributions                   html  
    survreg.object                          html  
    survregDtest                            html  
    tcut                                    html  
    tmerge                                  html  
    tobin                                   html  
    transplant                              html  
    udca                                    html  
    untangle.specials                       html  
    uspop2                                  html  
    vcov.coxph                              html  
    veteran                                 html  
    xtfrm.Surv                              html  
    yates                                   html  
    yates_setup                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survival)
Making 'packages.html' ... done
begin installing recommended package boot
* installing *source* package 'boot' ...
** package 'boot' successfully unpacked and MD5 sums checked
** using non-staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'boot'
    finding HTML links ... done
    EEF.profile                             html  
    Imp.Estimates                           html  
    abc.ci                                  html  
    acme                                    html  
    aids                                    html  
    aircondit                               html  
    amis                                    html  
    aml                                     html  
    beaver                                  html  
    bigcity                                 html  
    boot-practicals                         html  
    boot                                    html  
    boot.array                              html  
    boot.ci                                 html  
    brambles                                html  
    breslow                                 html  
    calcium                                 html  
    cane                                    html  
    capability                              html  
    catsM                                   html  
    cav                                     html  
    cd4                                     html  
    cd4.nested                              html  
    censboot                                html  
    channing                                html  
    claridge                                html  
    cloth                                   html  
    co.transfer                             html  
    coal                                    html  
    control                                 html  
    corr                                    html  
    cum3                                    html  
    cv.glm                                  html  
    darwin                                  html  
    dogs                                    html  
    downs.bc                                html  
    ducks                                   html  
    empinf                                  html  
    envelope                                html  
    exp.tilt                                html  
    fir                                     html  
    freq.array                              html  
    frets                                   html  
    glm.diag                                html  
    glm.diag.plots                          html  
    gravity                                 html  
    hirose                                  html  
    imp.weights                             html  
    inv.logit                               html  
    islay                                   html  
    jack.after.boot                         html  
    k3.linear                               html  
    linear.approx                           html  
    lines.saddle.distn                      html  
    logit                                   html  
    manaus                                  html  
    melanoma                                html  
    motor                                   html  
    neuro                                   html  
    nitrofen                                html  
    nodal                                   html  
    norm.ci                                 html  
    nuclear                                 html  
    paulsen                                 html  
    plot.boot                               html  
    poisons                                 html  
    polar                                   html  
    print.boot                              html  
    print.bootci                            html  
    print.saddle.distn                      html  
    print.simplex                           html  
    remission                               html  
    saddle                                  html  
    saddle.distn                            html  
    saddle.distn.object                     html  
    salinity                                html  
    simplex                                 html  
    simplex.object                          html  
    smooth.f                                html  
    sunspot                                 html  
    survival                                html  
    tau                                     html  
    tilt.boot                               html  
    tsboot                                  html  
    tuna                                    html  
    urine                                   html  
    var.linear                              html  
    wool                                    html  
** building package indices
** testing if installed package can be loaded
* DONE (boot)
Making 'packages.html' ... done
begin installing recommended package cluster
* installing *source* package 'cluster' ...
** package 'cluster' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
using Fortran compiler: 'GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpNoaaQe/R.INSTALL4a3462066e14/cluster/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c clara.c -o clara.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c daisy.f -o daisy.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: daisy.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dysta.f -o dysta.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dysta.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fanny.c -o fanny.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mona.c -o mona.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pam.c -o pam.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sildist.c -o sildist.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c spannel.c -o spannel.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c twins.c -o twins.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpNoaaQe/R.INSTALL4a3462066e14/cluster/src'
installing to /builddir/build/BUILD/R-rc/library/cluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cluster'
    finding HTML links ... done
    agnes                                   html  
    agnes.object                            html  
    agriculture                             html  
    animals                                 html  
    bannerplot                              html  
    chorSub                                 html  
    clara                                   html  
    clara.object                            html  
    clusGap                                 html  
    clusplot.default                        html  
    clusplot.partition                      html  
    cluster-internal                        html  
    coef.hclust                             html  
    daisy                                   html  
    diana                                   html  
    dissimilarity.object                    html  
    ellipsoidhull                           html  
    fanny                                   html  
    fanny.object                            html  
    flower                                  html  
    lower.to.upper.tri.inds                 html  
    medoids                                 html  
    mona                                    html  
    mona.object                             html  
    pam                                     html  
    pam.object                              html  
    partition.object                        html  
    plantTraits                             html  
    plot.agnes                              html  
    plot.diana                              html  
    plot.mona                               html  
    plot.partition                          html  
    pltree                                  html  
    pluton                                  html  
    predict.ellipsoid                       html  
    print.agnes                             html  
    print.clara                             html  
    print.diana                             html  
    print.dissimilarity                     html  
    print.fanny                             html  
    print.mona                              html  
    print.pam                               html  
    ruspini                                 html  
    silhouette                              html  
    sizeDiss                                html  
    summary.agnes                           html  
    summary.clara                           html  
    summary.diana                           html  
    summary.mona                            html  
    summary.pam                             html  
    twins.object                            html  
    volume.ellipsoid                        html  
    votes.repub                             html  
    xclara                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (cluster)
Making 'packages.html' ... done
begin installing recommended package codetools
* installing *source* package 'codetools' ...
** package 'codetools' successfully unpacked and MD5 sums checked
** using non-staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'codetools'
    finding HTML links ... done
    checkUsage                              html  
    codetools                               html  
    findGlobals                             html  
    showTree                                html  
** building package indices
** testing if installed package can be loaded
* DONE (codetools)
Making 'packages.html' ... done
begin installing recommended package foreign
* installing *source* package 'foreign' ...
** package 'foreign' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpFOKCOK/R.INSTALL4aa9357fc464/foreign/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c R_systat.c -o R_systat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Rdbfread.c -o Rdbfread.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c Rdbfwrite.c -o Rdbfwrite.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c SASxport.c -o SASxport.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c avl.c -o avl.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c dbfopen.c -o dbfopen.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c file-handle.c -o file-handle.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c format.c -o format.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c minitab.c -o minitab.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pfm-read.c -o pfm-read.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sfm-read.c -o sfm-read.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c spss.c -o spss.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c stataread.c -o stataread.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpFOKCOK/R.INSTALL4aa9357fc464/foreign/src'
installing to /builddir/build/BUILD/R-rc/library/foreign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'foreign'
    finding HTML links ... done
    lookup.xport                            html  
    read.S                                  html  
    read.arff                               html  
    read.dbf                                html  
    read.dta                                html  
    read.epiinfo                            html  
    read.mtp                                html  
    read.octave                             html  
    read.spss                               html  
    read.ssd                                html  
    read.systat                             html  
    read.xport                              html  
    write.arff                              html  
    write.dbf                               html  
    write.dta                               html  
    write.foreign                           html  
** building package indices
** testing if installed package can be loaded
* DONE (foreign)
Making 'packages.html' ... done
begin installing recommended package KernSmooth
* installing *source* package 'KernSmooth' ...
** package 'KernSmooth' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
using Fortran compiler: 'GNU Fortran (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpAC0M4M/R.INSTALL4b0e1a00dbcc/KernSmooth/src'
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c blkest.f -o blkest.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: blkest.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c cp.f -o cp.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: cp.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dgedi.f -o dgedi.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dgedi.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dgefa.f -o dgefa.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dgefa.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c dgesl.f -o dgesl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: dgesl.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c linbin.f -o linbin.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: linbin.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c linbin2D.f -o linbin2D.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: linbin2D.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c locpoly.f -o locpoly.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: locpoly.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c rlbin.f -o rlbin.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: rlbin.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c sdiag.f -o sdiag.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: sdiag.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gfortran  -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -flto -c sstdiag.f -o sstdiag.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
f951: Warning: -D_FORTIFY_SOURCE not defined
annobin: sstdiag.f: Warning: -D_GLIBCXX_ASSERTIONS not defined
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lflexiblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpAC0M4M/R.INSTALL4b0e1a00dbcc/KernSmooth/src'
installing to /builddir/build/BUILD/R-rc/library/KernSmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'KernSmooth'
    finding HTML links ... done
    bkde                                    html  
    bkde2D                                  html  
    bkfe                                    html  
    dpih                                    html  
    dpik                                    html  
    dpill                                   html  
    locpoly                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (KernSmooth)
Making 'packages.html' ... done
begin installing recommended package rpart
* installing *source* package 'rpart' ...
** package 'rpart' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpTl0yQP/R.INSTALL4b6837b64898/rpart/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c anova.c -o anova.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c anovapred.c -o anovapred.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c branch.c -o branch.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c bsplit.c -o bsplit.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c choose_surg.c -o choose_surg.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c fix_cp.c -o fix_cp.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c free_tree.c -o free_tree.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gini.c -o gini.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c graycode.c -o graycode.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c insert_split.c -o insert_split.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c make_cp_list.c -o make_cp_list.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c make_cp_table.c -o make_cp_table.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mysort.c -o mysort.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c nodesplit.c -o nodesplit.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c partition.c -o partition.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c poisson.c -o poisson.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pred_rpart.c -o pred_rpart.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c print_tree.c -o print_tree.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rpart.c -o rpart.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rpart_callback.c -o rpart_callback.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rpartexp.c -o rpartexp.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rpartexp2.c -o rpartexp2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rpcountup.c -o rpcountup.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rpmatrix.c -o rpmatrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rundown.c -o rundown.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c rundown2.c -o rundown2.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c surrogate.c -o surrogate.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c usersplit.c -o usersplit.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c xpred.c -o xpred.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c xval.c -o xval.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpTl0yQP/R.INSTALL4b6837b64898/rpart/src'
installing to /builddir/build/BUILD/R-rc/library/rpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rpart'
    finding HTML links ... done
    car.test.frame                          html  
    car90                                   html  
    cu.summary                              html  
    kyphosis                                html  
    labels.rpart                            html  
    meanvar.rpart                           html  
    na.rpart                                html  
    path.rpart                              html  
    plot.rpart                              html  
    plotcp                                  html  
    post.rpart                              html  
    predict.rpart                           html  
    print.rpart                             html  
    printcp                                 html  
    prune.rpart                             html  
    residuals.rpart                         html  
    rpart-internal                          html  
    rpart                                   html  
    rpart.control                           html  
    rpart.exp                               html  
    rpart.object                            html  
    rsq.rpart                               html  
    snip.rpart                              html  
    solder.balance                          html  
    stagec                                  html  
    summary.rpart                           html  
    text.rpart                              html  
    xpred.rpart                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rpart)
Making 'packages.html' ... done
begin installing recommended package class
* installing *source* package 'class' ...
** package 'class' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpANCy8b/R.INSTALL4bfa1fb98f39/class/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c class.c -o class.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o class.so class.o -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpANCy8b/R.INSTALL4bfa1fb98f39/class/src'
installing to /builddir/build/BUILD/R-rc/library/class/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'class'
    finding HTML links ... done
    SOM                                     html  
    batchSOM                                html  
    condense                                html  
    knn                                     html  
    knn.cv                                  html  
    knn1                                    html  
    lvq1                                    html  
    lvq2                                    html  
    lvq3                                    html  
    lvqinit                                 html  
    lvqtest                                 html  
    multiedit                               html  
    olvq1                                   html  
    reduce.nn                               html  
    somgrid                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (class)
Making 'packages.html' ... done
begin installing recommended package nnet
* installing *source* package 'nnet' ...
** package 'nnet' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpDuRkgS/R.INSTALL4c32197408d7/nnet/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c nnet.c -o nnet.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o nnet.so nnet.o -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpDuRkgS/R.INSTALL4c32197408d7/nnet/src'
installing to /builddir/build/BUILD/R-rc/library/nnet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nnet'
    finding HTML links ... done
    class.ind                               html  
    multinom                                html  
    nnet.Hess                               html  
    nnet                                    html  
    predict.nnet                            html  
    which.is.max                            html  
** building package indices
** testing if installed package can be loaded
* DONE (nnet)
Making 'packages.html' ... done
begin installing recommended package spatial
* installing *source* package 'spatial' ...
** package 'spatial' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpxY3hcq/R.INSTALL4c6a6016e18d/spatial/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c krc.c -o krc.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c pps.c -o pps.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpxY3hcq/R.INSTALL4c6a6016e18d/spatial/src'
installing to /builddir/build/BUILD/R-rc/library/spatial/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'spatial'
    finding HTML links ... done
    Kaver                                   html  
    Kenvl                                   html  
    Kfn                                     html  
    Psim                                    html  
    SSI                                     html  
    Strauss                                 html  
    anova.trls                              html  
    correlogram                             html  
    expcov                                  html  
    ppgetregion                             html  
    ppinit                                  html  
    pplik                                   html  
    ppregion                                html  
    predict.trls                            html  
    prmat                                   html  
    semat                                   html  
    surf.gls                                html  
    surf.ls                                 html  
    trls.influence                          html  
    trmat                                   html  
    variogram                               html  
** building package indices
** testing if installed package can be loaded
* DONE (spatial)
Making 'packages.html' ... done
begin installing recommended package mgcv
* installing *source* package 'mgcv' ...
** package 'mgcv' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[3]: Entering directory '/tmp/RtmpdsfSTX/R.INSTALL4ca855628c01/mgcv/src'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c coxph.c -o coxph.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c davies.c -o davies.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c discrete.c -o discrete.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c gdi.c -o gdi.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c init.c -o init.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c magic.c -o magic.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mat.c -o mat.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c matrix.c -o matrix.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mgcv.c -o mgcv.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c misc.c -o misc.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c mvn.c -o mvn.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c ncv.c -o ncv.o
ncv.c: In function 'ncvls':
ncv.c:877:98: warning: 'detacv' may be used uninitialized in this function [-Wmaybe-uninitialized]
  877 |   double *X,*H,*Hi,*l1,*l2,*l3=NULL,*beta,*g,*Hp,xx,z,*d,*d1,*cgwork,*eta,*deta,v,*db=NULL,*dbp,*detacv,*dh;
      |                                                                                                  ^~~~~~
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c qp.c -o qp.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c soap.c -o soap.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sparse-smooth.c -o sparse-smooth.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c sparse.c -o sparse.o
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG   -I/usr/local/include   -fopenmp -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c tprs.c -o tprs.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o ncv.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -lflexiblas -lflexiblas -lgfortran -lm -lquadmath -fopenmp -L/builddir/build/BUILD/R-rc/lib -lR
make[3]: Leaving directory '/tmp/RtmpdsfSTX/R.INSTALL4ca855628c01/mgcv/src'
installing to /builddir/build/BUILD/R-rc/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mgcv'
    finding HTML links ... done
    Beta                                    html  
    FFdes                                   html  
    Predict.matrix                          html  
    Predict.matrix.cr.smooth                html  
    Predict.matrix.soap.film                html  
    Rrank                                   html  
    Sl.initial.repara                       html  
    Sl.repara                               html  
    Sl.setup                                html  
    Tweedie                                 html  
    XWXd                                    html  
    anova.gam                               html  
    bam                                     html  
    bam.update                              html  
    bandchol                                html  
    blas.thread.test                        html  
    bug.reports.mgcv                        html  
    cSplineDes                              html  
    chol.down                               html  
    choose.k                                html  
    cnorm                                   html  
    columb                                  html  
    concurvity                              html  
    coxph                                   html  
    coxpht                                  html  
    dDeta                                   html  
    dpnorm                                  html  
    exclude.too.far                         html  
    extract.lme.cov                         html  
    factor.smooth                           html  
    family.mgcv                             html  
    fix.family.link                         html  
    fixDependence                           html  
    formXtViX                               html  
    formula.gam                             html  
    fs.test                                 html  
    full.score                              html  
    gam                                     html  
    gam.check                               html  
    gam.control                             html  
    gam.convergence                         html  
    gam.fit                                 html  
    gam.fit3                                html  
    gam.fit5.post.proc                      html  
    gam.mh                                  html  
    gam.models                              html  
    gam.outer                               html  
    gam.reparam                             html  
    gam.scale                               html  
    gam.selection                           html  
    gam.side                                html  
    gam.vcomp                               html  
    gam2objective                           html  
    gamObject                               html  
    gamSim                                  html  
    gamlss.etamu                            html  
    gamlss.gH                               html  
    gamm                                    html  
    gammals                                 html  
    gaulss                                  html  
    get.var                                 html  
    gevlss                                  html  
    ginla                                   html  
    gumbls                                  html  
    identifiability                         html  
    in.out                                  html  
    inSide                                  html  
    influence.gam                           html  
    initial.sp                              html  
    interpret.gam                           html  
    jagam                                   html  
    k.check                                 html  
    ldTweedie                               html  
    ldetS                                   html  
    linear.functional.terms                 html  
    logLik.gam                              html  
    ls.size                                 html  
    magic                                   html  
    magic.post.proc                         html  
    mgcv-FAQ                                html  
    mgcv-package                            html  
    mgcv-parallel                           html  
    mini.roots                              html  
    missing.data                            html  
    model.matrix.gam                        html  
    mono.con                                html  
    mroot                                   html  
    multinom                                html  
    mvn                                     html  
    negbin                                  html  
    new.name                                html  
    notExp                                  html  
    notExp2                                 html  
    null.space.dimension                    html  
    ocat                                    html  
    one.se.rule                             html  
    pcls                                    html  
    pdIdnot                                 html  
    pdTens                                  html  
    pen.edf                                 html  
    place.knots                             html  
    plot.gam                                html  
    polys.plot                              html  
    predict.bam                             html  
    predict.gam                             html  
    print.gam                               html  
    psum.chisq                              html  
    qq.gam                                  html  
    rTweedie                                html  
    random.effects                          html  
    residuals.gam                           html  
    rig                                     html  
    rmvn                                    html  
    s                                       html  
    scat                                    html  
    sdiag                                   html  
    shash                                   html  
    single.index                            html  
    slanczos                                html  
    smooth.construct                        html  
    smooth.construct.ad.smooth.spec         html  
    smooth.construct.bs.smooth.spec         html  
    smooth.construct.cr.smooth.spec         html  
    smooth.construct.ds.smooth.spec         html  
    smooth.construct.fs.smooth.spec         html  
    smooth.construct.gp.smooth.spec         html  
    smooth.construct.mrf.smooth.spec        html  
    smooth.construct.ps.smooth.spec         html  
    smooth.construct.re.smooth.spec         html  
    smooth.construct.so.smooth.spec         html  
    smooth.construct.sos.smooth.spec        html  
    smooth.construct.sz.smooth.spec         html  
    smooth.construct.t2.smooth.spec         html  
    smooth.construct.tensor.smooth.spec     html  
    smooth.construct.tp.smooth.spec         html  
    smooth.info                             html  
    smooth.terms                            html  
    smooth2random                           html  
    smoothCon                               html  
    sp.vcov                                 html  
    spasm.construct                         html  
    step.gam                                html  
    summary.gam                             html  
    t2                                      html  
    te                                      html  
    tensor.prod.model.matrix                html  
    totalPenaltySpace                       html  
    trichol                                 html  
    trind.generator                         html  
    twlss                                   html  
    uniquecombs                             html  
    vcov.gam                                html  
    vis.gam                                 html  
    ziP                                     html  
    ziplss                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
Making 'packages.html' ... done
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/Recommended'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/src/library/Recommended'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
building/updating vignettes for package 'stats' ...
processing 'reshape.Rnw'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/src/library'
make[1]: Entering directory '/builddir/build/BUILD/R-rc'
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 11.0.19
Java home path   : /usr/lib/jvm/jre
Java compiler    : /usr/bin/javac
Java headers gen.: 
Java archive tool: /usr/bin/jar
trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
using C compiler: 'gcc (GCC) 11.3.1 20220421 (Red Hat 11.3.1-2)'
make[2]: Entering directory '/tmp/Rjavareconf.wErVHh'
gcc -I"/builddir/build/BUILD/R-rc/include" -DNDEBUG -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux  -I/usr/local/include    -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -c conftest.c -o conftest.o
gcc -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -fPIC -L/builddir/build/BUILD/R-rc/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o conftest.so conftest.o -L/usr/lib/jvm/jre/lib/server -ljvm -L/builddir/build/BUILD/R-rc/lib -lR
make[2]: Leaving directory '/tmp/Rjavareconf.wErVHh'
JAVA_HOME        : /usr/lib/jvm/jre
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /builddir/build/BUILD/R-rc
Done.
make[1]: Leaving directory '/builddir/build/BUILD/R-rc'
+ cd src/nmath/standalone
+ make
(cd ../../include; make Rmath.h)
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src/include'
make[1]: 'Rmath.h' is up to date.
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/src/include'
Copying source files
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/src/nmath/standalone'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c mlutils.c -o mlutils.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c d1mach.c -o d1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c i1mach.c -o i1mach.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fmax2.c -o fmax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fmin2.c -o fmin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fprec.c -o fprec.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fround.c -o fround.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c ftrunc.c -o ftrunc.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c sign.c -o sign.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fsign.c -o fsign.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c imax2.c -o imax2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c imin2.c -o imin2.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c chebyshev.c -o chebyshev.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c log1p.c -o log1p.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c lgammacor.c -o lgammacor.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c gammalims.c -o gammalims.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c stirlerr.c -o stirlerr.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bd0.c -o bd0.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma.c -o gamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c lgamma.c -o lgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma_cody.c -o gamma_cody.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c beta.c -o beta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c lbeta.c -o lbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c polygamma.c -o polygamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c cospi.c -o cospi.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_i.c -o bessel_i.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_j.c -o bessel_j.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_k.c -o bessel_k.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_y.c -o bessel_y.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c choose.c -o choose.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c snorm.c -o snorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c sexp.c -o sexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dgamma.c -o dgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pgamma.c -o pgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qgamma.c -o qgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rgamma.c -o rgamma.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dbeta.c -o dbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pbeta.c -o pbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qbeta.c -o qbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rbeta.c -o rbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dunif.c -o dunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c punif.c -o punif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qunif.c -o qunif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c runif.c -o runif.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnorm.c -o dnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnorm.c -o pnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnorm.c -o qnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rnorm.c -o rnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dlnorm.c -o dlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c plnorm.c -o plnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qlnorm.c -o qlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rlnorm.c -o rlnorm.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c df.c -o df.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pf.c -o pf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qf.c -o qf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rf.c -o rf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnf.c -o dnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dt.c -o dt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pt.c -o pt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qt.c -o qt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rt.c -o rt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnt.c -o dnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dchisq.c -o dchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pchisq.c -o pchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qchisq.c -o qchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rchisq.c -o rchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rnchisq.c -o rnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dbinom.c -o dbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pbinom.c -o pbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qbinom.c -o qbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rbinom.c -o rbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rmultinom.c -o rmultinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dcauchy.c -o dcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pcauchy.c -o pcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qcauchy.c -o qcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rcauchy.c -o rcauchy.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dexp.c -o dexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pexp.c -o pexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qexp.c -o qexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rexp.c -o rexp.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dgeom.c -o dgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pgeom.c -o pgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qgeom.c -o qgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeom.c -o rgeom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dhyper.c -o dhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c phyper.c -o phyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qhyper.c -o qhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rhyper.c -o rhyper.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbinom.c -o dnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbinom.c -o pnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom.c -o qnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom_mu.c -o qnbinom_mu.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rnbinom.c -o rnbinom.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dpois.c -o dpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c ppois.c -o ppois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qpois.c -o qpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rpois.c -o rpois.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dweibull.c -o dweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pweibull.c -o pweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qweibull.c -o qweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rweibull.c -o rweibull.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dlogis.c -o dlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c plogis.c -o plogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qlogis.c -o qlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rlogis.c -o rlogis.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnchisq.c -o dnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnchisq.c -o pnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnchisq.c -o qnchisq.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbeta.c -o dnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbeta.c -o pnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbeta.c -o qnbeta.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnf.c -o pnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnt.c -o pnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnf.c -o qnf.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnt.c -o qnt.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c ptukey.c -o ptukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qtukey.c -o qtukey.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c toms708.c -o toms708.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c wilcox.c -o wilcox.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c signrank.c -o signrank.o
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c std_unif.c -o std_unif.o
ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/src/nmath/standalone'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src/nmath/standalone'
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c mlutils.c -o mlutils.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c d1mach.c -o d1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c i1mach.c -o i1mach.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fmax2.c -o fmax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fmin2.c -o fmin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fprec.c -o fprec.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fround.c -o fround.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c ftrunc.c -o ftrunc.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c sign.c -o sign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c fsign.c -o fsign.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c imax2.c -o imax2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c imin2.c -o imin2.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c chebyshev.c -o chebyshev.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c log1p.c -o log1p.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c lgammacor.c -o lgammacor.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c gammalims.c -o gammalims.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c stirlerr.c -o stirlerr.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bd0.c -o bd0.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma.c -o gamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c lgamma.c -o lgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c gamma_cody.c -o gamma_cody.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c beta.c -o beta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c lbeta.c -o lbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c polygamma.c -o polygamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c cospi.c -o cospi.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_i.c -o bessel_i.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_j.c -o bessel_j.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_k.c -o bessel_k.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c bessel_y.c -o bessel_y.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c choose.c -o choose.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c snorm.c -o snorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c sexp.c -o sexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dgamma.c -o dgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pgamma.c -o pgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qgamma.c -o qgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rgamma.c -o rgamma.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dbeta.c -o dbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pbeta.c -o pbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qbeta.c -o qbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rbeta.c -o rbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dunif.c -o dunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c punif.c -o punif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qunif.c -o qunif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c runif.c -o runif.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnorm.c -o dnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnorm.c -o pnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnorm.c -o qnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rnorm.c -o rnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dlnorm.c -o dlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c plnorm.c -o plnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qlnorm.c -o qlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rlnorm.c -o rlnorm.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c df.c -o df.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pf.c -o pf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qf.c -o qf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rf.c -o rf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnf.c -o dnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dt.c -o dt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pt.c -o pt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qt.c -o qt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rt.c -o rt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnt.c -o dnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dchisq.c -o dchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pchisq.c -o pchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qchisq.c -o qchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rchisq.c -o rchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rnchisq.c -o rnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dbinom.c -o dbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pbinom.c -o pbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qbinom.c -o qbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rbinom.c -o rbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rmultinom.c -o rmultinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dcauchy.c -o dcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pcauchy.c -o pcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qcauchy.c -o qcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rcauchy.c -o rcauchy.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dexp.c -o dexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pexp.c -o pexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qexp.c -o qexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rexp.c -o rexp.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dgeom.c -o dgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pgeom.c -o pgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qgeom.c -o qgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rgeom.c -o rgeom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dhyper.c -o dhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c phyper.c -o phyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qhyper.c -o qhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rhyper.c -o rhyper.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbinom.c -o dnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbinom.c -o pnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom.c -o qnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbinom_mu.c -o qnbinom_mu.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rnbinom.c -o rnbinom.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dpois.c -o dpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c ppois.c -o ppois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qpois.c -o qpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rpois.c -o rpois.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dweibull.c -o dweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pweibull.c -o pweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qweibull.c -o qweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rweibull.c -o rweibull.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dlogis.c -o dlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c plogis.c -o plogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qlogis.c -o qlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c rlogis.c -o rlogis.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnchisq.c -o dnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnchisq.c -o pnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnchisq.c -o qnchisq.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c dnbeta.c -o dnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnbeta.c -o pnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnbeta.c -o qnbeta.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnf.c -o pnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c pnt.c -o pnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnf.c -o qnf.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qnt.c -o qnt.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c ptukey.c -o ptukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c qtukey.c -o qtukey.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c toms708.c -o toms708.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c wilcox.c -o wilcox.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c signrank.c -o signrank.lo
gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fPIC  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -c std_unif.c -o std_unif.lo
gcc -shared -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o libRmath.so  mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
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Chapter 1.
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[]\T1/ptm/m/n/10 the small-est pos-i-tive floating-point num-ber []\T1/pcr/m/n/
10 x []\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 + x != 1[]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 It equals []\T1/pcr/m/n/10 double.base ^ ulp.digits []\T1/ptm/m/
n/10 if ei-ther []\T1/pcr/m/n/10 double.base []\T1/ptm/m/n/10 is
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\T1/ptm/m/n/10 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0; oth
-er-wise, it is []\T1/pcr/m/n/10 (double.base ^
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/pcr/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/pcr/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/pcr/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/pcr/m/n/10 (double.base
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\T1/pcr/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/p
cr/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
[5]
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[]\T1/ptm/m/n/10 the num-ber of \T1/ptm/m/it/10 bytes \T1/ptm/m/n/10 in the C [
]\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 type: a 64-bit []\T1/pcr/m/n/10 time_t 
[]\T1/ptm/m/n/10 (value
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[]\T1/pcr/m/n/10 8[]\T1/ptm/m/n/10 ) is much pre-ferred these days. Note that t
his is the type used by
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[]\T1/pcr/m/n/10 *.exponent[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 *.min.exp[]\T1/p
tm/m/n/10 , and []\T1/pcr/m/n/10 *.max.exp[]\T1/ptm/m/n/10 , com-puted en-tirel
y anal-o-gously to their
[6] [7]
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[][][]\T1/pcr/m/n/10 R.version[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 
Sys.info[][][] []\T1/ptm/m/n/10 give more de-tails about the OS. In par-tic-u-l
ar,
[8] [9] [10]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
[11]
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 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, v
alue = TRUE)[] 
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 []\T1/pcr/m/n/9 agrep("laysy", c("1 lazy", "1", "1 LAZY"), max.distance = 2, i
gnore.case = TRUE)[] 
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[15]
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 []\T1/pcr/m/n/9 all.equal(tan(d45), one, tolerance = 0, scale = 1+(-2:2)/1e9) 
# "absolute"[] 
[16]
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 []\T1/pcr/m/n/9 mtext(paste("mean(all.equal(x1, x2*(1 + eps_k))) {100 x} Mean 
rel.diff.=",[] 
[17]
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 []\T1/pcr/m/n/10 all.names(expr, functions = TRUE, max.names = -1L, unique = F
ALSE) 
[18] [19] [20] [21] [22] [23] [24]
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(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [25]
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[]\T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion, where \T1/phv/m/n/10 R \T1/p
tm/m/n/10 uses ``floored'' in-te-ger di-vi-sion, i.e., []\T1/pcr/m/n/10 q <- x 
%/% y :=
[26]
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[]\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . orac
le . com / cd / E19957-[]01 / 806-[]3568 / ncg _
[27] [28] [29] [30]
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 []              \T1/pcr/m/n/10 cut.names = FALSE, col.names = names(x), fix.em
pty.names = TRUE,[] 
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[]\T1/ptm/m/n/10 logical or in-te-ger; in-di-cat-ing if col-umn names with more
 than 256 (or
[32]
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[]\T1/ptm/m/n/10 Direct calls to []\T1/pcr/m/n/10 as.data.frame.<class>() []\T1
/ptm/m/n/10 are still pos-si-ble (base pack-age!), for 12
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\T1/ptm/m/n/10 atomic base classes, but will dep-re-cated (al-ready vis-i-bly b
y set-ting en-vi-ron-ment vari-
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\T1/ptm/m/n/10 able []\T1/pcr/m/n/10 _R_CHECK_AS_DATA_FRAME_EXPLICIT_METHOD_ []
\T1/ptm/m/n/10 to non-empty) where call-ing
[33] [34] [35]
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 []\T1/pcr/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[36]
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[]\T1/ptm/m/n/10 If [][][]\T1/pcr/m/n/10 is.object[][][](x) []\T1/ptm/m/n/10 is
 true and it has a [][][]\T1/pcr/m/n/10 class[][][] []\T1/ptm/m/n/10 for which 
an
[37] [38] [39] [40]
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 []\T1/pcr/m/n/9 (now <- as.POSIXlt(Sys.time())) # the current datetime, as cla
ss "POSIXlt"[] 
[41] [42] [43]
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[]\T1/ptm/m/n/10 There are no re-stric-tions on the name given as []\T1/pcr/m/n
/10 x[]\T1/ptm/m/n/10 : it can be a non-syntactic name (see
[44] [45]
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 []\T1/pcr/m/n/10 attach(what, pos = 2L, name = deparse1(substitute(what), back
tick=FALSE), 
[46] [47] [48] [49] [50] [51] [52]
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[]\T1/pcr/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/pcr/m/n/10 balancePOSIXlt(x,
[53] [54] [55] [56]
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 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", nus), col = nus + 2, 
lwd = 1, bty="n")[] 
[57]
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 []\T1/pcr/m/n/9 plot(range(x0), c(1e-40, 1), log = "xy", xlab = "x", ylab = ""
, type = "n",[] 
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 []     \T1/pcr/m/n/9 main = "Bessel Functions  J_nu(x)  near 0\n log - log  sc
ale") ; axis(2, at=1)[] 
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 []\T1/pcr/m/n/9 plot(range(x0), 10^c(-100, 80), log = "xy", xlab = "x", ylab =
 "", type = "n",[] 
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 []     \T1/pcr/m/n/9 main = "Bessel Functions  K_nu(x)  near 0\n log - log  sc
ale") ; axis(2, at=1)[] 
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 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", paste(nus, nus + 0.5,
 sep = ", ")),[] 
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[59] [60] [61] [62] [63] [64]
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[65] [66] [67] [68] [69] [70] [71]
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the name of a C func-tion, or an 
ob-ject
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\T1/ptm/m/n/10 of class []\T1/pcr/m/n/10 "[][]NativeSymbolInfo[][][]"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "[][]RegisteredNativeSymbol[][][]" []\T1/ptm/m/n/10 o
r
[72]
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 []             \T1/pcr/m/n/10 Xchk = any(nas %in% c("X11", "jpeg", "png", "tif
f")))[] 
[73]
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[]\T1/ptm/m/n/10 is ICU avail-able for col-la-tion? See the help on [][]Com-par
-i-son[][][] and
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 []\T1/pcr/m/n/9 cat(paste(letters, 100* 1:26), fill = TRUE, labels = paste0("{
", 1:10, "}:"))[] 
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[]\T1/ptm/m/n/10 (generalized) vec-tors or ma-tri-ces. These can be given as na
med ar-gu-
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[]\T1/ptm/m/n/10 (only for data frame method:) log-i-cal in-di-cat-ing if uniqu
e and valid
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 []\T1/pcr/m/n/9 rbind(1:4, c = 2, "a++" = 10, dd, deparse.level = 1) # 3 rowna
mes (default)[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/ptm/m/n/10 When a generic func-tion []\T1/pcr/m/n/10 fun []\T1/ptm/m/n/10
 is ap-plied to an ob-ject with class at-tribute []\T1/pcr/m/n/10 c("first",
[91] [92] [93] [94] [95] [96] [97] [98]
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[]\T1/ptm/m/n/10 Collation of char-ac-ter strings is a com-plex topic. For an i
n-tro-duc-tion see [][]$\T1/pcr/m/n/10 https : / /
[99] [100] [101]
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 []\T1/pcr/m/n/9 ## The exact result of this *depends* on the platform, compile
r, math-library:[] 
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 []\T1/pcr/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
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 []\T1/pcr/m/n/9 showC(NpNA)# but not always is {shows  \TS1/pcr/m/n/9 '\T1/pcr
/m/n/9 (R = NaN, I = NA)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 on some platforms}[] 
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[]\T1/ptm/m/n/10 User in-ter-rupts sig-nal a con-di-tion of class []\T1/pcr/m/n
/10 interrupt []\T1/ptm/m/n/10 that in-her-its di-rectly from class
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[]\T1/ptm/m/n/10 Restarts are used for es-tab-lish-ing re-cov-ery pro-to-cols. 
They can be es-tab-lished us-ing
[104]
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[]\T1/ptm/m/n/10 One ad-di-tional field that can be spec-i-fied for a restart i
s []\T1/pcr/m/n/10 interactive[]\T1/ptm/m/n/10 . This should
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 []\T1/pcr/m/n/10 unz(description, filename, open = "", encoding = getOption("e
ncoding"))[] 
[107]
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[]\T1/ptm/m/n/10 character string, par-tially matched to []\T1/pcr/m/n/10 c("de
fault", "internal",
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[]\T1/pcr/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 unz[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 socketConnection[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 It may be pos-si-ble to de-duce the cur-rent na-tive en-cod-in
g from
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[]\T1/pcr/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/pcr/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/pcr/m/n/10 "r" []\T1/ptm/m/n
/10 only. This
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\T1/ptm/m/n/10 reads the X11 pri-mary se-lec-tion (see [][]$\T1/pcr/m/n/10 http
s : / / specifications . freedesktop .
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[]\T1/pcr/m/n/10 "X11_primary" []\T1/ptm/m/n/10 and the sec-ondary se-lec-tion 
as []\T1/pcr/m/n/10 "X11_secondary"[]\T1/ptm/m/n/10 . On most sys-
[113] [114] [115]
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 []\T1/pcr/m/n/9 A <- read.table(con <- file("students", encoding = "UCS-2LE"))
; close(con)[] 
[117] [118] [119] [120]
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[]\T1/ptm/m/n/10 The cur-rent eval-u-a-tion depth (in-clud-ing two calls for th
e call to
[121] [122] [123]
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 []\T1/pcr/m/n/9 curlGetHeaders("http://bugs.r-project.org")   ## this redirect
s to https://[] 
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 []\T1/pcr/m/n/9 ## curlGetHeaders("ftp://cran.r-project.org") ## ftp::// suppo
rt is vanishing[] 
[124] [125] [126] [127]
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 []\T1/pcr/m/n/9 tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", leng
th.out = 24)[] 
[128]
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[]\T1/pcr/m/n/10 data.frame []\T1/ptm/m/n/10 con-verts each of its ar-gu-ments 
to a data frame by call-ing
Underfull \hbox (badness 1975) in paragraph at lines 8718--8728
[][][]\T1/pcr/m/n/10 as.data.frame[][][](optional = TRUE)[]\T1/ptm/m/n/10 . As 
that is a generic func-tion, meth-ods can be
[129] [130] [131]
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 []                 \T1/pcr/m/n/9 c = seq(as.Date("2004-01-01"), by = "week", l
ength.out = 3),[] 
[132] [133] [134] [135]
Underfull \hbox (badness 10000) in paragraph at lines 9214--9226
\T1/pcr/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") []\T1/ptm/m
/n/10 may give []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 , and
[136] [137] [138] [139] [140] [141] [142]
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[]\T1/pcr/m/n/10 .Defunct []\T1/ptm/m/n/10 is called from de-funct func-tions. 
Func-tions should be listed in
[143] [144]
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 []\T1/pcr/m/n/9 ### Promises in an environment [for advanced users]:  --------
-------------[] 
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 []\T1/pcr/m/n/9 e <- (function(x, y = 1, z) environment())(cos, "y", {cat(" HO
!\n"); pi+2})[] 
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 []        \T1/pcr/m/n/10 backtick = mode(expr) %in% c("call", "expression", "(
", "function"),[] 
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 []        \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "sh
owAttributes"),[] 
[145] [146]
Underfull \hbox (badness 5403) in paragraph at lines 10011--10013
[]\T1/pcr/m/n/10 ..deparseOpts []\T1/ptm/m/n/10 is the [][][]\T1/pcr/m/n/10 cha
racter[][][] []\T1/ptm/m/n/10 vec-tor of pos-si-ble de-pars-ing op-tions used b
y
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[]\T1/ptm/m/n/10 Surround un-eval-u-ated ex-pres-sions, but not [][][]\T1/pcr/m
/n/10 formula[][][][]\T1/ptm/m/n/10 s, with
[147] [148] [149]
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[]\T1/ptm/m/n/10 a nu-meric value. The mod-u-lus (ab-so-lute value) of the de-t
er-mi-nant if
[150] [151] [152] [153] [154] [155] [156]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 10726--10726
 []    \T1/pcr/m/n/10 z <- as.POSIXct(c("2016-12-31 23:59:59", "2017-01-01 00:0
0:01"))[] 
[157] [158]
Underfull \hbox (badness 1917) in paragraph at lines 10890--10895
[]\T1/pcr/m/n/10 provideDimnames(x) []\T1/ptm/m/n/10 pro-vides []\T1/pcr/m/n/10
 dimnames []\T1/ptm/m/n/10 where ``miss-ing'', such that its re-sult has
[159]
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 []\T1/pcr/m/n/9 strd(provideDimnames(N, base= list(letters[-(1:9)], tail(LETTE
RS)))) # recycling[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 10946--10946
 []\T1/pcr/m/n/9 strd(provideDimnames(A, base= list(c("AA","BB")))) # recycling
 on both levels[] 
[160] [161]
Underfull \hbox (badness 1168) in paragraph at lines 11048--11053
[]\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of []\
T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . Cur-rently this is only used by
[162]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11150--11150
 []\T1/pcr/m/n/9 ## From R 4.1.0 to 4.1.2, ...names() sometimes did not match n
ames(list(...));[] 
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 []\T1/pcr/m/n/9 chk.n2 <- function(...) stopifnot(identical(print(...names()),
 names(list(...))))[] 
[163] [164]
Underfull \hbox (badness 2828) in paragraph at lines 11271--11276
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
Underfull \hbox (badness 10000) in paragraph at lines 11271--11276
\T1/pcr/m/n/10 org / wiki / IEEE _ 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr
/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _
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\T1/pcr/m/n/10 754-[]2019$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
pcr/m/n/10 https :
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 []     \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "showA
ttributes"))[] 
[165]
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 []\T1/pcr/m/n/9 ## Write an ASCII version of the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 base\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 function mean() to our temp file, ..[] 
[166] [167]
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 []\T1/pcr/m/n/9 aq <- transform(airquality, Month = factor(Month, labels = mon
th.abb[5:9])) 
[168] [169] [170]
Underfull \hbox (badness 6396) in paragraph at lines 11723--11731
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
Underfull \hbox (badness 10000) in paragraph at lines 11732--11734
[]\T1/pcr/m/n/10 duplicated(x, fromLast = TRUE) []\T1/ptm/m/n/10 is equiv-a-len
t to but faster than
[171] [172] [173]
Underfull \hbox (badness 10000) in paragraph at lines 11949--11952
[]\T1/ptm/m/n/10 Do not use []\T1/pcr/m/n/10 dyn.unload []\T1/ptm/m/n/10 on a D
LL loaded by [][][]\T1/pcr/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 : use
[174] [175] [176] [177] [178] [179]
Underfull \hbox (badness 2744) in paragraph at lines 12393--12395
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
[180]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12416--12416
 []\T1/pcr/m/n/9 Encoding(x.) # "unknown" (UTF-8 loc.) | "latin1" (8859-1/CP-12
52 loc.) | ....[] 
[181] [182] [183]
Underfull \hbox (badness 5288) in paragraph at lines 12668--12670
[]\T1/ptm/m/n/10 The path to the de-fault browser. Used to set the de-fault val
ue of
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[]\T1/ptm/m/n/10 Optional. The path to Ghostscript, used by [][][]\T1/pcr/m/n/1
0 dev2bitmap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bitmap[][][] []\T1/pt
m/m/n/10 and
[184]
Underfull \hbox (badness 10000) in paragraph at lines 12735--12738
[]\T1/ptm/m/n/10 The path to HTML []\T1/pcr/m/n/10 tidy[]\T1/ptm/m/n/10 . Used 
by []\T1/pcr/m/n/10 R CMD check []\T1/ptm/m/n/10 if
Underfull \hbox (badness 10000) in paragraph at lines 12753--12755
[]\T1/ptm/m/n/10 (and more). Op-tional. Set-tings for
[185] [186] [187] [188]
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[]\T1/ptm/m/n/10 a frame in the call-ing list. Equiv-a-lent to giv-ing []\T1/pc
r/m/n/10 where []\T1/ptm/m/n/10 as
Underfull \hbox (badness 5970) in paragraph at lines 13046--13048
[]\T1/pcr/m/n/10 get0(): []\T1/ptm/m/n/10 The object---as from [][][]\T1/pcr/m/
n/10 get[][][](x, *)[]\T1/ptm/m/n/10 --- if []\T1/pcr/m/n/10 exists(x, *) []\T1
/ptm/m/n/10 is true, oth-er-wise
[189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13869--13869
 []\T1/pcr/m/n/9 ## "avector" := vector that keeps attributes.   Could provide 
a constructor[] 
[201] [202] [203] [204] [205] [206] [207] [208] [209] [210]
Underfull \hbox (badness 2253) in paragraph at lines 14597--14599
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[211] [212]
Underfull \hbox (badness 2573) in paragraph at lines 14765--14767
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/pcr
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/pcr/m/n/10 fsep =
[213] [214]
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[]\T1/ptm/m/n/10 logical: should file dates be pre-served where pos-si-ble? See
[215] [216]
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 15056--15059
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
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 []                     \T1/pcr/m/n/9 # |--> (TRUE,FALSE) : ok for A but not B 
as it exists already[] 
[217]
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 []\T1/pcr/m/n/10 dir.create(path, showWarnings = TRUE, recursive = FALSE, mode
 = "0777")[] 
[218]
Underfull \hbox (badness 10000) in paragraph at lines 15199--15202
[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 unlink[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 basename[][][][]\T1/
ptm/m/n/10 ,
Overfull \hbox (9.78043pt too wide) in paragraph at lines 15209--15209
 []\T1/pcr/m/n/9 f <- list.files(".", all.files = TRUE, full.names = TRUE, recu
rsive = TRUE)[] 
[219]
Underfull \hbox (badness 10000) in paragraph at lines 15275--15278
[]\T1/pcr/m/n/10 packageNotFoundError []\T1/ptm/m/n/10 cre-ates an er-ror con-d
i-tion ob-ject of class
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 []\T1/pcr/m/n/9 ## will not give an error, maybe a warning about *all* locatio
ns it is found:[] 
[220]
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 []\T1/pcr/m/n/10 findInterval(x, vec, rightmost.closed = FALSE, all.inside = F
ALSE, 
Underfull \hbox (badness 3965) in paragraph at lines 15353--15357
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[221] [222] [223]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 15517--15517
 []       \T1/pcr/m/n/10 .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING) 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 15518--15518
 [] \T1/pcr/m/n/10 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING)[] 
[224] [225] [226] [227]
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 []\T1/pcr/m/n/9 ## formals returns a pairlist. Arguments with no default have 
type symbol (aka name).[] 
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 []\T1/pcr/m/n/9 ## formals returns NULL for primitive functions.  Use it in co
mbination with[] 
[228]
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[]\T1/ptm/m/n/10 Either a log-i-cal spec-i-fy-ing whether el-e-ments of a real 
or com-plex vec-
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\T1/ptm/m/n/10 tor should be en-coded in sci-en-tific for-mat, or an in-te-ger 
penalty (see
[229]
Underfull \hbox (badness 6944) in paragraph at lines 15946--15949
[][][]\T1/pcr/m/n/10 formatC[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 paste
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 sprintf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
rint[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 prettyNum[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 toString[][][][]\T1/ptm/m/n/10 ,
[230]
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 []\T1/pcr/m/n/9 z <- list(a = letters[1:3], b = (-pi+0i)^((-2:2)/2), c = c(1,1
0,100,1000),[] 
[231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 16109--16111
[]\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 is used for ``pret-ti-fy-ing'' (p
os-si-bly for-mat-ted) num-bers, also in
Overfull \hbox (48.78088pt too wide) in paragraph at lines 16129--16129
 []          \T1/pcr/m/n/10 decimal.mark = getOption("OutDec"), input.d.mark = 
decimal.mark,[] 
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 []\T1/pcr/m/n/10 .format.zeros(x, zero.print, nx = suppressWarnings(as.numeric
(x)),[] 
Underfull \hbox (badness 2790) in paragraph at lines 16142--16145
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/pcr/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[233]
Underfull \hbox (badness 1024) in paragraph at lines 16173--16180
[]\T1/pcr/m/n/10 "f" []\T1/ptm/m/n/10 gives num-bers in the usual []\T1/pcr/m/n
/10 xxx.xxx []\T1/ptm/m/n/10 for-mat; []\T1/pcr/m/n/10 "e" []\T1/ptm/m/n/10 and
 []\T1/pcr/m/n/10 "E" []\T1/ptm/m/n/10 give
[234]
Underfull \hbox (badness 10000) in paragraph at lines 16248--16250
[]\T1/ptm/m/n/10 This works via []\T1/pcr/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/pcr/m/n/10 .format.zeros(*,
Underfull \hbox (badness 10000) in paragraph at lines 16270--16275
[]\T1/ptm/m/n/10 For num-bers, []\T1/pcr/m/n/10 formatC() []\T1/ptm/m/n/10 call
s []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 when needed which it-self calls
Underfull \hbox (badness 2426) in paragraph at lines 16276--16278
[]\T1/ptm/m/n/10 If you set []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 it over-ri
des the set-ting of []\T1/pcr/m/n/10 mode[]\T1/ptm/m/n/10 , so []\T1/pcr/m/n/10
 formatC(123.45, mode =
Underfull \hbox (badness 10000) in paragraph at lines 16287--16295
[]\T1/pcr/m/n/10 prettyNum []\T1/ptm/m/n/10 is the util-ity func-tion for pret-
ti-fy-ing []\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 x []\T1/ptm/m/n
/10 can be com-plex (or
[235] [236]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 16395--16395
 []\T1/pcr/m/n/9 fc <- formatC(1.234 + 10^(0:8), format = "fg", width = 11, big
.mark = "\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ")[] 
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 []\T1/pcr/m/n/9 doLC <- FALSE # <= R warns, so change to TRUE manually if you 
want see the effect[] 
Underfull \vbox (badness 10000) has occurred while \output is active [237]
[238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 17251--17251
 []\T1/pcr/m/n/9 utils::tail(getLoadedDLLs(), 2) # the last 2 loaded ones, stil
l a DLLInfoList[] 
[249] [250]
Underfull \hbox (badness 2418) in paragraph at lines 17360--17364
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/pcr/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
Underfull \hbox (badness 6510) in paragraph at lines 17367--17370
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 name []\T1/ptm/m/n/10 con-tains only one s
ym-bol name and []\T1/pcr/m/n/10 unlist []\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 TR
UE[]\T1/ptm/m/n/10 , then the sin-gle
Underfull \hbox (badness 2326) in paragraph at lines 17402--17409
[][][]\T1/pcr/m/n/10 getDLLRegisteredRoutines[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 is.loaded[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .C[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Fortran[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 .External[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Call[][][][]
\T1/ptm/m/n/10 ,
[251] [252]
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[]\T1/ptm/m/n/10 The spe-cial case []\T1/pcr/m/n/10 bindtextdomain(NULL) []\T1/
ptm/m/n/10 calls C level
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[]\T1/pcr/m/n/10 textdomain(textdomain(NULL)) []\T1/ptm/m/n/10 for the pur-pose
 of flush-ing (i.e., emp-ty-ing) the
[253]
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 []\T1/pcr/m/n/9 if(is.na(thisLang) || !nzchar(thisLang)) thisLang <- "en" # "f
actory" default[] 
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 []\T1/pcr/m/n/9 gettext(enT, domain="R-stats")# "leeres Modell angegeben" (if 
translation works)[] 
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 17606--17606
 []\T1/pcr/m/n/9 ## Here, we reset to the *original* setting before the full ex
ample started:[] 
[255] [256]
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 []\T1/pcr/m/n/10 grep(pattern, x, ignore.case = FALSE, perl = FALSE, value = F
ALSE, 
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[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[257] [258] [259] [260] [261]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 18089--18089
 []  \T1/pcr/m/n/9 nms <- nms[is.na(match(nms, c("F","T")))] # <-- work around 
"checking hack"[] 
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 []\T1/pcr/m/n/9 name.rex <- "(?<first>[[:upper:]][[:lower:]]+) (?<last>[[:uppe
r:]][[:lower:]]+)"[] 
Underfull \vbox (badness 10000) has occurred while \output is active [262]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 18174--18174
 []        \T1/pcr/m/n/10 value = FALSE, fixed = FALSE, all = FALSE, invert = F
ALSE)[] 
[263] [264] [265] [266] [267]
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 []\T1/pcr/m/n/9 (ii <- grouping(x <- c(1, 1, 3:1, 1:4, 3), y <- c(9, 9:1), z <
- c(2, 1:9))) 
[268]
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 []\T1/pcr/m/n/9 z <- gzcon(url("https://www.stats.ox.ac.uk/pub/datasets/csb/ch
12.dat.gz"))[] 
[269] [270] [271]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 18845--18845
 []\T1/pcr/m/n/10 iconv(x, from = "", to = "", sub = NA, mark = TRUE, toRaw = F
ALSE) 
[272] [273] [274] [275]
Underfull \hbox (badness 1163) in paragraph at lines 19189--19191
[]\T1/ptm/m/n/10 The ICU user guide chap-ter on col-la-tion ([][]$\T1/pcr/m/n/1
0 https : / / unicode-[]org . github . io / icu /
[276]
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 []\T1/pcr/m/n/9 ## As we don\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 t know the current s
ettings, we can only reset to the default.[] 
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 []\T1/pcr/m/n/10 identical(x, y, num.eq = TRUE, single.NA = TRUE, attrib.as.se
t = TRUE, 
[277]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 19321--19321
 []              \T1/pcr/m/n/10 num.eq = FALSE, single.NA = FALSE, attrib.as.se
t = FALSE,[] 
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 []              \T1/pcr/m/n/10 ignore.bytecode = FALSE, ignore.environment = F
ALSE,[] 
[278]
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 []\T1/pcr/m/n/9 ### For functions ("closure"s): ------------------------------
----------------[] 
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 []\T1/pcr/m/n/9 identical(f, g)                        # TRUE, as bytecode is 
ignored by default[] 
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 []\T1/pcr/m/n/9 ## GLM families contain several functions, some of which share
 an environment:[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19390--19390
 []\T1/pcr/m/n/9 op <- options(keep.source = TRUE) # and so, these have differi
ng "srcref" :[] 
[279] [280]
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 []\T1/pcr/m/n/9 ## This is a (not atypical) case where it is better *not* to u
se ifelse(),[] 
[281]
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 []\T1/pcr/m/n/9 ## example of different return modes (and \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 test\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 alone determining length):[] 
[282] [283]
Underfull \hbox (badness 10000) in paragraph at lines 19730--19732
[]\T1/ptm/m/n/10 how some er-rors are han-dled and re-ported, e.g. see [][][]\T
1/pcr/m/n/10 stop[][][] []\T1/ptm/m/n/10 and
[284] [285] [286] [287] [288]
Underfull \hbox (badness 10000) in paragraph at lines 20070--20076
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[]\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . orac
le . com / cd / E19957-[]01 / 806-[]3568 / ncg _
[289] [290] [291]
Underfull \hbox (badness 4699) in paragraph at lines 20315--20318
[]\T1/pcr/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 ,
[292] [293]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20443--20443
 []\T1/pcr/m/n/10 ISOdate(year, month, day, hour = 12, min = 0, sec = 0, tz = "
GMT")[] 
[294] [295] [296]
Underfull \hbox (badness 4739) in paragraph at lines 20578--20580
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[297]
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 []\T1/pcr/m/n/9 isSymmetric(D3)                         # FALSE (as row and co
lumn names differ)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 20628--20628
 []\T1/pcr/m/n/9 isSymmetric(D3, check.attributes=FALSE) # TRUE  (as names are 
not checked)[] 
[298] [299]
Underfull \hbox (badness 2961) in paragraph at lines 20805--20808
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
[300] [301] [302] [303] [304] [305] [306]
Underfull \hbox (badness 1975) in paragraph at lines 21246--21249
[]\T1/ptm/m/n/10 The value of the in-ter-nal eval-u-a-tion of a top-level \T1/p
hv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sion is al-ways as-signed to
[307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 1077) in paragraph at lines 21662--21667
[]\T1/ptm/m/n/10 In late 2017 a []\T1/pcr/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/pcr/m/n/10 libcurl []\T
1/ptm/m/n/10 and
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[][][]$\T1/pcr/m/n/10 https : / / curl . se / docs / sslcerts . html$[][] \T1/p
tm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / curl . se / docs /
[313]
Underfull \hbox (badness 1112) in paragraph at lines 21749--21758
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/pcr/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
[314]
Underfull \hbox (badness 2970) in paragraph at lines 21807--21810
[]\T1/pcr/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/pcr/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a
Underfull \hbox (badness 2951) in paragraph at lines 21807--21810
\T1/ptm/m/n/10 hid-den di-rec-tory and may not be viewed by some soft-ware. It 
may be opened by
[315] [316]
Underfull \hbox (badness 10000) in paragraph at lines 21920--21924
[]\T1/ptm/m/n/10 To sup-press mes-sages dur-ing the load-ing of pack-ages use
Underfull \hbox (badness 1454) in paragraph at lines 21920--21924
[][][]\T1/pcr/m/n/10 suppressPackageStartupMessages[][][][]\T1/ptm/m/n/10 : thi
s will sup-press all mes-sages from \T1/phv/m/n/10 R \T1/ptm/m/n/10 it-self
Underfull \hbox (badness 1221) in paragraph at lines 21925--21932
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 is called with no
 []\T1/pcr/m/n/10 package []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 help []\T1/ptm/m
/n/10 ar-gu-ment, it lists all avail-able pack-
[317] [318]
Underfull \hbox (badness 10000) in paragraph at lines 22054--22061
[][][]\T1/pcr/m/n/10 attach[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 detach
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 search[][][][]\T1/ptm/m/n/10 , []
[][]\T1/pcr/m/n/10 objects[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 autoloa
d[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 requireNamespace[][][][]\T1/ptm/
m/n/10 ,
[319]
Underfull \hbox (badness 10000) in paragraph at lines 22175--22179
[]\T1/ptm/m/n/10 Do not use [][][]\T1/pcr/m/n/10 dyn.unload[][][] []\T1/ptm/m/n
/10 on a DLL loaded by []\T1/pcr/m/n/10 library.dynam[]\T1/ptm/m/n/10 : use
[320]
Underfull \hbox (badness 5161) in paragraph at lines 22245--22250
[]\T1/ptm/m/n/10 A small num-ber of files (some of the API header files) are di
s-tributed un-der the
Underfull \hbox (badness 6592) in paragraph at lines 22245--22250
\T1/ptm/m/n/10 LESSER GNU GEN-ERAL PUB-LIC LI-CENSE, ver-sion 2.1 or later. A c
opy of
Underfull \hbox (badness 5133) in paragraph at lines 22245--22250
\T1/ptm/m/n/10 this li-cense is in file `\T1/pcr/m/n/10 $R_SHARE_DIR/licenses/L
GPL-2.1\T1/ptm/m/n/10 ' and can be viewed
Underfull \hbox (badness 10000) in paragraph at lines 22245--22250
\T1/ptm/m/n/10 by []\T1/pcr/m/n/10 RShowDoc("LGPL-2.1")[]\T1/ptm/m/n/10 . Ver-s
ion 3 of the li-cense can be dis-played by
[321] [322] [323]
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
[324]
Underfull \hbox (badness 3343) in paragraph at lines 22478--22482
[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 files[][][] []\T1/ptm/
m/n/10 for many more file han-dling func-tions and
[325] [326]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 22616--22616
 []          \T1/pcr/m/n/9 identical(L$b, e$b)) # "$" working for environments 
as for lists[] 
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 []              \T1/pcr/m/n/9 df = data.frame(x = rnorm(20), y = rbinom(20, 1,
 prob = 0.2))),[] 
[327] [328]
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 []\T1/pcr/m/n/9 ## This however annihilates all objects in .GlobalEnv with the
 same names ![] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 22741--22741
 []\T1/pcr/m/n/9 attach("all.rda") # safer and will warn about masked objects w
/ same name in .GlobalEnv[] 
Underfull \hbox (badness 6380) in paragraph at lines 22788--22796
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-
[329] [330]
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[]\T1/ptm/m/n/10 Almost all the out-put rou-tines used by \T1/phv/m/n/10 R \T1/
ptm/m/n/10 it-self un-der Win-dows ig-nore the set-ting of
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 []\T1/pcr/m/n/9 Sys.setlocale("LC_TIME", "de_DE.UTF-8")  # Linux, macOS, other
 Unix-alikes[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # in C_TIME locale \T
S1/pcr/m/n/9 '\T1/pcr/m/n/9 cT\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 ; typically German
[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # "standard" (still p
latform specific ?)[] 
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 []\T1/pcr/m/n/9 ## Not run: Sys.setlocale("LC_COLLATE", "C")   # turn off loca
le-specific sorting,[] 
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 []\T1/pcr/m/n/9 Sys.setenv("LANGUAGE" = "es") # set the language for error/war
ning messages[] 
[331]
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 [] \T1/pcr/m/n/9 sg <- matrix(unlist(strsplit(strsplit(Sys.getlocale(), sep)[[
1]], "=")), nrow=2)[] 
[332] [333]
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[][][]\T1/pcr/m/n/10 raw[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logical[]
[][] []\T1/ptm/m/n/10 or `number-like' vec-tors (i.e., of types [][][]\T1/pcr/m
/n/10 double[][][] []\T1/ptm/m/n/10 (class
[334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 23960--23960
 []\T1/pcr/m/n/9 zN <- c(complex(real = NA , imaginary =  r ), complex(real =  
r , imaginary = NA ),[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 23961--23961
 []        \T1/pcr/m/n/9 complex(real =  r , imaginary = NaN), complex(real = N
aN, imaginary =  r ))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 23964--23964
 []\T1/pcr/m/n/9 zM ##--> many "NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s" (= 1) and th
e four non-NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s (3 different ones, at 7,9,10)[] 
[346] [347]
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 []\T1/pcr/m/n/9 match.arg(c("a", ""),  c("", NA, "bb", "abc"), several.ok=TRUE
) # |-->  "abc"[] 
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[]\T1/ptm/m/n/10 `function' on this help page means an in-ter-preted func-tion 
(also known as a `clo-sure'):
[348] [349] [350] [351]
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[]\T1/ptm/m/n/10 For ma-trix \T1/ptm/m/it/10 cross\T1/ptm/m/n/10 products, [][]
[]\T1/pcr/m/n/10 crossprod[][][]() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 tcross
prod() []\T1/ptm/m/n/10 are typ-i-cally prefer-able.
[352] [353] [354] [355] [356] [357] [358] [359] [360]
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[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
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\T1/ptm/m/n/10 changed to al-low more (up to 3Gb). See [][]$\T1/pcr/m/n/10 http
s : / / docs . microsoft . com / en-[]gb /
[361]
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 []      \T1/pcr/m/n/10 by.x = by, by.y = by, all = FALSE, all.x = all, all.y =
 all,[] 
[362] [363] [364] [365] [366] [367] [368] [369]
Underfull \hbox (badness 1448) in paragraph at lines 25554--25562
[]\T1/pcr/m/n/10 anyNA(recursive = FALSE) []\T1/ptm/m/n/10 works the same way a
s []\T1/pcr/m/n/10 is.na[]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 anyNA(recursive =
[370]
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[]\T1/pcr/m/n/10 as.name []\T1/ptm/m/n/10 first co-erces its ar-gu-ment in-ter-
nally to a char-ac-ter vec-tor (so meth-ods for
[371]
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[]\T1/ptm/m/n/10 For an [][][]\T1/pcr/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list,
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\T1/ptm/m/n/10 i.e., []\T1/pcr/m/n/10 names(as.list(env, all.names = TRUE)) []\
T1/ptm/m/n/10 which are also given by [][][]\T1/pcr/m/n/10 ls[][][](env,
Underfull \hbox (badness 3148) in paragraph at lines 25746--25752
\T1/pcr/m/n/10 all.names = TRUE, sorted = FALSE)[]\T1/ptm/m/n/10 . If the en-vi
-ron-ment is used as a hash ta-ble,
[372] [373] [374]
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[]\T1/ptm/m/n/10 character string: par-tial match-ing to one of []\T1/pcr/m/n/1
0 c("bytes", "chars",
[375] [376] [377]
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[]\T1/ptm/m/n/10 optional [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/pcr/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[378] [379] [380]
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\T1/ptm/m/n/10 tion []\T1/pcr/m/n/10 GetFinalPathNameByHandle []\T1/ptm/m/n/10 
and in case of an er-ror (such as in-suf-fi-cient per-
[381] [382] [383] [384]
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[]\T1/ptm/m/n/10 Loading a names-pace should where pos-si-ble be silent, with s
tartup mes-sages given by
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[]\T1/pcr/m/n/10 .onAttach[]\T1/ptm/m/n/10 . These mes-sages (and any es-sen-ti
al ones from []\T1/pcr/m/n/10 .onLoad[]\T1/ptm/m/n/10 ) should use
[385]
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[]\T1/ptm/m/n/10 Uses of []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 with ar-gu-m
ent []\T1/pcr/m/n/10 help []\T1/ptm/m/n/10 to dis-play ba-sic in-for-ma-tion ab
out the pack-
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\T1/ptm/m/n/10 age should use []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 on the c
om-puted pack-age in-for-ma-tion ob-ject and pass this to
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 []\T1/pcr/m/n/10 attachNamespace(ns, pos = 2L, depends = NULL, exclude, includ
e.only) 
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 []              \T1/pcr/m/n/10 keep.parse.data = getOption("keep.parse.data.pk
gs"))[] 
[386]
Underfull \hbox (badness 10000) in paragraph at lines 26744--26750
[]\T1/pcr/m/n/10 loadNamespace []\T1/ptm/m/n/10 does not at-tach the name space
 it loads to the search path.
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[]\T1/pcr/m/n/10 attachNamespace []\T1/ptm/m/n/10 can be used to at-tach a fram
e con-tain-ing the ex-ported val-ues of a
Underfull \hbox (badness 10000) in paragraph at lines 26757--26759
[]\T1/pcr/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/pcr/m/n/10 pkg %in%
[387]
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 [] \T1/pcr/m/n/9 ## The string "foo" and the symbol \TS1/pcr/m/n/9 '\T1/pcr/m/
n/9 foo\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 can be used interchangably here:[] 
[388] [389] [390]
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[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 is.numeric []\T1/ptm/
m/n/10 re-turns []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 if its ar-gu-ment is of 
[][]mode[][][]
[391] [392] [393]
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\T1/ptm/m/n/10 ject as ob-tained by [][][]\T1/pcr/m/n/10 R.version[][][][]\T1/p
tm/m/n/10 . For []\T1/pcr/m/n/10 as.numeric_version []\T1/ptm/m/n/10 and
[394] [395] [396] [397]
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[]\T1/ptm/m/n/10 date ob-jects or char-ac-ter vec-tors. (Char-ac-ter vec-tors a
re con-verted by
[398] [399]
Underfull \hbox (badness 1210) in paragraph at lines 27654--27662
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-
[400] [401]
Underfull \hbox (badness 3271) in paragraph at lines 27874--27877
[]\T1/ptm/m/n/10 default PDF viewer. The de-fault is set from the en-vi-ron-men
t vari-able
[402] [403] [404]
Underfull \hbox (badness 3138) in paragraph at lines 28180--28186
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/pcr/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 28180--28186
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/pcr/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 2088) in paragraph at lines 28180--28186
\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
[405]
Underfull \hbox (badness 1194) in paragraph at lines 28193--28196
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/pcr/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/pcr/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and
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[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
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[]\T1/ptm/m/n/10 logical: should per-directory pack-age lock-ing be used by
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[]\T1/ptm/m/n/10 Used by [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
[406]
Underfull \hbox (badness 1009) in paragraph at lines 28279--28282
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/pcr/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/pcr/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The de-fault type of pack-ages to be down-loaded and in-stalle
d -- see
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[]\T1/pcr/m/n/10 "source" []\T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN 
ma-cOS
Underfull \hbox (badness 10000) in paragraph at lines 28303--28309
\T1/ptm/m/n/10 build), []\T1/pcr/m/n/10 "mac.binary" []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 "both" []\T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS
Underfull \hbox (badness 10000) in paragraph at lines 28303--28309
\T1/ptm/m/n/10 builds). ([]\T1/pcr/m/n/10 "mac.binary.el-capitan"[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 "mac.binary.mavericks"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 5091) in paragraph at lines 28303--28309
[]\T1/pcr/m/n/10 "mac.binary.leopard" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "ma
c.binary.universal" []\T1/ptm/m/n/10 are no longer
[407] [408] [409] [410] [411]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28675--28675
 []\T1/pcr/m/n/9 system.time(o <- sort.list(xx, method = "radix")) # 0.007 sec,
 300X faster[] 
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[]\T1/ptm/m/n/10 where el-e-ment []\T1/pcr/m/n/10 A[c(arrayindex.x, arrayindex.
y)] = FUN(X[arrayindex.x],
[412] [413]
Underfull \hbox (badness 1210) in paragraph at lines 28835--28838
[]\T1/pcr/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/pcr/m/n/10 parse(tex
t=s,
[414] [415] [416]
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 []\T1/pcr/m/n/9 tryCatch(parse(text = txt, srcfile = sf), error = function(e) 
"Syntax error.")[] 
[417]
Underfull \hbox (badness 7133) in paragraph at lines 29117--29123
[][][]\T1/pcr/m/n/10 toString[][][] []\T1/ptm/m/n/10 typ-i-cally calls []\T1/pc
r/m/n/10 paste(*, collapse=", ")[]\T1/ptm/m/n/10 . String ma-nip-u-la-tion with
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 []\T1/pcr/m/n/9 ## Notice that the recycling rules make every input as long as
 the longest input.[] 
[418]
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 []\T1/pcr/m/n/9 paste("1st", "2nd", "3rd", collapse = ", ") # probably not wha
t you wanted[] 
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 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 recycle0 = TRUE\TS1/pcr/m/n/9
 ' \T1/pcr/m/n/9 allows more vectorized behaviour, i.e. zero-length recycling :
[] 
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 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- good: empty!", recycle0=
TRUE) # -> character(0)[] 
[419] [420] [421]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 29356--29356
 []\T1/pcr/m/n/9 mtcars |> subset(cyl == 4) |> nrow()  # same as nrow(subset(mt
cars, cyl == 4))[] 
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 []\T1/pcr/m/n/9 stop() |> (function(...) {})() # stop() is not used on RHS so 
is not evaluated[] 
[422]
Underfull \hbox (badness 1360) in paragraph at lines 29429--29433
[]\T1/ptm/m/n/10 All other []\T1/pcr/m/n/10 type[]\T1/ptm/m/n/10 s give a warn-
ing or an er-ror; us-ing, e.g., []\T1/pcr/m/n/10 type =
[423] [424] [425] [426]
Underfull \hbox (badness 2277) in paragraph at lines 29741--29746
\T1/ptm/m/n/10 i.e., strictly in-clude the bounds of []\T1/pcr/m/n/10 x[]\T1/pt
m/m/n/10 . New from \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0, al-low-ing
[427] [428]
Underfull \hbox (badness 1701) in paragraph at lines 29857--29861
[]\T1/ptm/m/n/10 This func-tion is al-most never used: []\TS1/cmtt/m/n/10 `\T1/
pcr/m/n/10 name\TS1/cmtt/m/n/10 ` []\T1/ptm/m/n/10 or, more care-fully, [][][]\
T1/pcr/m/n/10 get[][][](name, envir =
[429]
Underfull \hbox (badness 1796) in paragraph at lines 29925--29928
[]\T1/ptm/m/n/10 character string (or []\T1/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/pcr/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
[430] [431] [432] [433]
Underfull \hbox (badness 10000) in paragraph at lines 30129--30132
[]\T1/ptm/m/n/10 Option []\T1/pcr/m/n/10 width []\T1/ptm/m/n/10 con-trols the p
rint-ing of vec-tors, ma-tri-ces and ar-rays, and op-tion
[434] [435] [436] [437] [438] [439] [440] [441]
Underfull \hbox (badness 2961) in paragraph at lines 30675--30678
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
[442] [443]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 30824--30824
 []           \T1/pcr/m/n/9 c1 = rep(c(1,0,0), 2), c2 = rep(c(0,1,0), 2), c3 = 
rep(c(0,0,1),2))[] 
[444] [445] [446] [447]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 31117--31117
 []\T1/pcr/m/n/9 (nn <- "\u0126\u0119\u1114\u022d\u2001\u03e2\u0954\u0f3f\u13d3
\u147b\u203c")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 31128--31128
 []\T1/pcr/m/n/9 n2 <- "\U0126\U0119\U1114\U022d\U2001\U03e2\U0954\U0f3f\U13d3\
U147b\U203c"[] 
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 []\T1/pcr/m/n/9 ## https://cran.r-project.org/doc/manuals/r-release/R-lang.htm
l#Literal-constants[] 
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 []\T1/pcr/m/n/9 ## nul characters (for terminating strings in C) are not allow
ed (parse errors)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [448]
[449]
Underfull \hbox (badness 7415) in paragraph at lines 31237--31243
[]\T1/ptm/m/n/10 Do \T1/ptm/m/it/10 not \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R.v
ersion$os []\T1/ptm/m/n/10 to test the plat-form the code is run-ning on: use
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 []\T1/pcr/m/n/9 mtext(R.version.string, side = 1, line = 4, adj = 1) # a usefu
l bottom-right note[] 
[450]
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 []\T1/pcr/m/n/10 set.seed(seed, kind = NULL, normal.kind = NULL, sample.kind =
 NULL)[] 
[451] [452]
Underfull \hbox (badness 3713) in paragraph at lines 31452--31463
[]\T1/pcr/m/n/10 normal.kind []\T1/ptm/m/n/10 can be []\T1/pcr/m/n/10 "Kinderma
n-Ramage"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Buggy Kinderman-Ramage" []\T1/ptm
/m/n/10 (not
[453]
Underfull \hbox (badness 1248) in paragraph at lines 31604--31611
\T1/ptm/m/n/10 uni-form pseudo-random num-ber gen-er-a-tor, \T1/ptm/m/it/10 ACM
 Trans-ac-tions on Mod-el-ing and Com-puter
Underfull \hbox (badness 10000) in paragraph at lines 31604--31611
\T1/ptm/m/n/10 Now see [][]$\T1/pcr/m/n/10 http : / / www . math . sci . hirosh
ima-[]u . ac . jp / ~m-[]mat / MT / VERSIONS /
[454] [455]
Underfull \hbox (badness 1533) in paragraph at lines 31722--31725
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[456] [457]
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 []     \T1/pcr/m/n/10 ties.method = c("average", "first", "last", "random", "m
ax", "min"))[] 
[458]
Underfull \hbox (badness 1038) in paragraph at lines 31885--31896
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/pcr/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[459] [460]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 32029--32029
 []\T1/pcr/m/n/9 rapply(X, function(x) x, how = "replace") -> X.; stopifnot(ide
ntical(X, X.))[] 
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 []\T1/pcr/m/n/9 rapply(X, deparse, control = "all") # passing extras. argument
 of deparse()[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "list")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 32033--32033
 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 32034--32034
 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character",                      h
ow = "unlist")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 32041--32041
 []\T1/pcr/m/n/9 rapply(E, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
[461] [462] [463] [464] [465]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 32349--32349
 []\T1/pcr/m/n/9 ## Bit representation  [ sign | exponent | mantissa ] of doubl
e prec numbers :[] 
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 []\T1/pcr/m/n/9 bitC <- function(x) noquote(vapply(as.double(x), function(x) {
 # split one double[] 
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 []\T1/pcr/m/n/9 d2bI <- function(x) vapply(as.double(x), function(x) intToBits
(numToInts(x)), raw(64L))[] 
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 []\T1/pcr/m/n/9 d2b  <- function(x) vapply(as.double(x), function(x)          
 numToBits(x) , raw(64L))[] 
[466]
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[]\T1/ptm/m/n/10 Either an ob-ject whose mode will give the mode of the vec-tor
 to
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\T1/ptm/m/n/10 be read, or a char-ac-ter vec-tor of length one de-scrib-ing the
 mode:
Underfull \hbox (badness 1824) in paragraph at lines 32457--32462
\T1/ptm/m/n/10 one of []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/pcr/m/
n/10 "double"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 "int"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/
10 ,
[467] [468] [469] [470] [471] [472] [473] [474]
Underfull \hbox (badness 2080) in paragraph at lines 32997--33007
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 infoRDS[]\T1/ptm/m/n/10 , an \T1/phv/m/n/
10 R \T1/ptm/m/n/10 list with el-e-ments []\T1/pcr/m/n/10 version []\T1/ptm/m/n
/10 (ver-sion num-ber, cur-rently 2 or 3),
[475]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 33031--33031
 []\T1/pcr/m/n/9 ## or examine the object via a connection, which will be opene
d as needed.[] 
[476] [477] [478] [479] [480] [481] [482]
Underfull \hbox (badness 7558) in paragraph at lines 33551--33555
[]\T1/pcr/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1968) in paragraph at lines 33561--33563
[]\T1/ptm/m/n/10 This help page is based on the TRE doc-u-men-ta-tion and the P
OSIX stan-dard, and the
Underfull \hbox (badness 10000) in paragraph at lines 33572--33574
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/pcr/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs /
Underfull \hbox (badness 1975) in paragraph at lines 33575--33579
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/pcr/m
/n/10 https : / / www .
[483] [484]
Underfull \vbox (badness 10000) has occurred while \output is active [485]
[486] [487] [488]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 33946--33946
 []\T1/pcr/m/n/9 rep(1:4, each = 2, times = 3)         # length 24, 3 complete 
replications[] 
[489]
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[][][]\T1/pcr/m/n/10 TRUE[][][] [][]FALSE[][][] [][]NULL[][][] [][]Inf[][][] []
[]NaN[][][] [][]NA[][][] [][]NA_integer_[][][] [][]NA_real_[][][] [][]NA_comple
x_[][][]
[490] [491] [492]
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[]\T1/pcr/m/n/10 signif []\T1/ptm/m/n/10 rounds the val-ues in its first ar-gu-
ment to the spec-i-fied num-ber of \T1/ptm/m/it/10 sig-nif-i-cant
Underfull \hbox (badness 1824) in paragraph at lines 34245--34250
\T1/ptm/m/n/10 dig-its. Hence, for []\T1/pcr/m/n/10 numeric x[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 signif(x, dig) []\T1/ptm/m/n/10 is the same as []\T1/pcr/m/n/
10 round(x, dig -
[493] [494]
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"))[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
[495] [496] [497] [498] [499] [500] [501]
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 []           \T1/pcr/m/n/10 useHash = (n > 1e+07 && !replace && is.null(prob) 
&& size <= n/2))[] 
[502] [503] [504] [505] [506] [507]
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 []     \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, skipNul =
 FALSE)[] 
[508] [509]
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
[510] [511]
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 []\T1/pcr/m/n/9 cat("TITLE extra line", "2 3 5 7", "11 13 17", file = "ex.data
", sep = "\n") 
[512] [513] [514]
Underfull \hbox (badness 4752) in paragraph at lines 35822--35825
[]\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence []\T1/pcr/
m/n/10 1, 2, ..., length(along.with)[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 5563) in paragraph at lines 35826--35832
[]\T1/ptm/m/n/10 The fifth form gen-er-ates the se-quence []\T1/pcr/m/n/10 1, 2
, ..., length(from) []\T1/ptm/m/n/10 (as if ar-gu-ment
[515] [516] [517] [518] [519] [520] [521] [522] [523]
Underfull \hbox (badness 6094) in paragraph at lines 36412--36416
[]\T1/pcr/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use
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\T1/ptm/m/n/10 with []\T1/pcr/m/n/10 getConnection[]\T1/ptm/m/n/10 , cor-re-spo
nd-ing to the row names of the ta-ble re-turned by
[524] [525]
Underfull \hbox (badness 3826) in paragraph at lines 36503--36514
[]\T1/ptm/m/n/10 In Win-dows, com-mand line in-ter-pre-ta-tion is done by the a
p-pli-ca-tion as well as the
Underfull \hbox (badness 3492) in paragraph at lines 36503--36514
\T1/ptm/m/n/10 shell. It may de-pend on the com-piler used: Mi-crosoft's rules 
for the C run-time
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\T1/ptm/m/n/10 are given at [][]$\T1/pcr/m/n/10 https : / / learn . microsoft .
 com / en-[]us / cpp / c-[]language /
Underfull \hbox (badness 1635) in paragraph at lines 36503--36514
\T1/pcr/m/n/10 parsing-[]c-[]command-[]line-[]arguments ? view = msvc-[]160$[][
]\T1/ptm/m/n/10 . It may de-pend on the
[526] [527] [528] [529] [530] [531] [532] [533]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 37057--37057
 []         \T1/pcr/m/n/10 method = c("auto", "shell", "quick", "radix"), index
.return = FALSE)[] 
[534] [535] [536] [537]
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 []              \T1/pcr/m/n/10 print. = TRUE, echo = TRUE, max.deparse.length 
= Inf,[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 37311--37311
 []              \T1/pcr/m/n/10 deparseCtrl = c("keepInteger", "showAttributes"
, "keepNA"),[] 
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 vec-tor, passed as []\T1/
pcr/m/n/10 control []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 deparse[][][]()[]\T
1/ptm/m/n/10 , see also
Underfull \hbox (badness 5050) in paragraph at lines 37354--37360
[][][]\T1/pcr/m/n/10 .deparseOpts[][][][]\T1/ptm/m/n/10 . In \T1/phv/m/n/10 R \
T1/ptm/m/n/10 ver-sion <= 3.3.x, this was hard-coded to
[538] [539]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 37465--37465
 []\T1/pcr/m/n/9 ## (all should look "as if on top level", e.g. non-assignments
 should print:)[] 
[540] [541] [542] [543] [544]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 37808--37808
 []\T1/pcr/m/n/9 ### Calculate \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 z-scores\TS1/pcr/m
/n/9 ' \T1/pcr/m/n/9 by group (standardize to mean zero, variance one)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 37823--37823
 []\T1/pcr/m/n/9 ## Notice that assignment form is not used since a variable is
 being added[] 
[545] [546] [547]
Underfull \hbox (badness 10000) in paragraph at lines 38048--38050
[][][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions /
[548] [549] [550]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 38275--38275
 []\T1/pcr/m/n/10 srcfile(filename, encoding = getOption("encoding"), Enc = "un
known") 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 38276--38276
 []\T1/pcr/m/n/10 srcfilecopy(filename, lines, timestamp = Sys.time(), isFile =
 FALSE)[] 
[551] [552] [553] [554] [555]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 38607--38607
 []\T1/pcr/m/n/9 startsWith(search(), "package:") # typically at least two FALS
E, nowadays often three 
[556]
Underfull \hbox (badness 6110) in paragraph at lines 38703--38713
[]\T1/ptm/m/n/10 A func-tion []\T1/pcr/m/n/10 .First []\T1/ptm/m/n/10 (and [][]
[]\T1/pcr/m/n/10 .Last[][][][]\T1/ptm/m/n/10 ) can be de-fined in ap-pro-pri-at
e `\T1/pcr/m/n/10 .Rprofile\T1/ptm/m/n/10 ' or
Underfull \hbox (badness 2635) in paragraph at lines 38703--38713
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' files or have been
 saved in `\T1/pcr/m/n/10 .RData\T1/ptm/m/n/10 '. If you want a dif-fer-ent
Underfull \hbox (badness 1237) in paragraph at lines 38703--38713
\T1/ptm/m/n/10 set of pack-ages than the de-fault ones when you start, in-sert 
a call to [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 in the
Underfull \hbox (badness 1231) in paragraph at lines 38703--38713
\T1/pcr/m/n/10 = character()) []\T1/ptm/m/n/10 will at-tach no ex-tra pack-ages
 on startup (only the \T1/ptm/b/n/10 base \T1/ptm/m/n/10 pack-age) (or
Underfull \hbox (badness 1112) in paragraph at lines 38703--38713
\T1/ptm/m/n/10 set []\T1/pcr/m/n/10 R_DEFAULT_PACKAGES=NULL []\T1/ptm/m/n/10 as
 an en-vi-ron-ment vari-able be-fore run-ning \T1/phv/m/n/10 R\T1/ptm/m/n/10 ).
 Us-ing
[557]
Underfull \hbox (badness 10000) in paragraph at lines 38759--38765
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/pcr/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 38759--38765
\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1496) in paragraph at lines 38759--38765
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/pcr/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be
Underfull \hbox (badness 1460) in paragraph at lines 38774--38781
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 38774--38781
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 38774--38781
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
[558]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 38836--38836
 []\T1/pcr/m/n/9 # Variable expansion in double quotes, string literals with ba
ckslashes in[] 
[559] [560] [561]
Underfull \hbox (badness 1484) in paragraph at lines 39009--39013
[]\T1/ptm/m/n/10 alternative to []\T1/pcr/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/pcr/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
Overfull \hbox (60.78088pt too wide) in paragraph at lines 39074--39074
 [] \T1/pcr/m/n/10 assert <- function(exprs) eval.parent(substitute(stopifnot(e
xprs = exprs))) 
[562] [563]
Underfull \hbox (badness 1436) in paragraph at lines 39176--39180
[]\T1/ptm/m/n/10 integer de-ter-min-ing the []\T1/pcr/m/n/10 format()[]\T1/ptm/
m/n/10 ing of sec-onds when needed. Note
[564] [565] [566] [567] [568]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 39569--39569
 []\T1/pcr/m/n/9 z3 # prints without fractional seconds by default, digits.sec 
= NULL ("= 0")[] 
[569]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 39597--39597
 []\T1/pcr/m/n/9 format(s1 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 19
78-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 day
\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ,   len =  7), "%a")[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 39598--39598
 []\T1/pcr/m/n/9 format(s2 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 20
00-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 mon
th\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 12), "%b")[] 
[570]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 39710--39710
 []            \T1/pcr/m/n/10 add the string to the left of the match to the ou
tput.[] 
[571] [572] [573] [574]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 39973--39973
 []        \T1/pcr/m/n/10 exdent = 0, prefix = "", simplify = TRUE, initial = p
refix)[] 
[575]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 40017--40017
 []\T1/pcr/m/n/9 x <- paste(readLines(file.path(R.home("doc"), "THANKS")), coll
apse = "\n")[] 
[576] [577] [578] [579] [580] [581]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 40464--40464
 []\T1/pcr/m/n/9 ## In fact, you can pass vectors into several arguments, and e
verything gets added.[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 40467--40467
 []\T1/pcr/m/n/9 ## If there are missing values, the sum is unknown, i.e., also
 missing, ....[] 
[582]
Underfull \hbox (badness 10000) in paragraph at lines 40518--40525
[]\T1/ptm/m/n/10 integer, used for num-ber for-mat-ting with [][][]\T1/pcr/m/n/
10 signif[][][]() []\T1/ptm/m/n/10 (for
Underfull \hbox (badness 10000) in paragraph at lines 40518--40525
[]\T1/pcr/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][][]\T1/pcr/m/n/10 form
at[][][]() []\T1/ptm/m/n/10 (for []\T1/pcr/m/n/10 summary.data.frame[]\T1/ptm/m
/n/10 ).
[583]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 40571--40571
 []\T1/pcr/m/n/9 summary(attenu, digits = 4) #-> summary.data.frame(...), defau
lt precision 
[584] [585] [586] [587] [588]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 40885--40885
 []    \T1/pcr/m/n/9 cat(ch,":", switch(EXPR = ch, a =, A = 1, b = 2:3, "Otherw
ise: last"),"\n")[] 
[589] [590] [591]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 41090--41090
 []\T1/pcr/m/n/9 if(.Platform$OS.type == "unix") ## on Unix-alikes such Linux, 
macOS, FreeBSD:[] 
[592]
Underfull \hbox (badness 2293) in paragraph at lines 41120--41126
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-
Underfull \hbox (badness 1237) in paragraph at lines 41120--41126
\T1/ptm/m/n/10 tails of wild-cards ex-pan-sion, see your sys-tem's doc-u-men-ta
-tion on the []\T1/pcr/m/n/10 glob []\T1/ptm/m/n/10 sys-tem call.
Underfull \hbox (badness 4792) in paragraph at lines 41139--41144
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/pcr/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
Underfull \hbox (badness 1107) in paragraph at lines 41139--41144
[]\T1/pcr/m/n/10 Sys.glob("*.RData") []\T1/ptm/m/n/10 may or may not match `\T1
/pcr/m/n/10 .RData\T1/ptm/m/n/10 ' but will not usu-ally match
[593] [594] [595] [596]
Underfull \hbox (badness 10000) in paragraph at lines 41427--41431
[]\T1/pcr/m/n/10 sys.status() []\T1/ptm/m/n/10 re-turns a list with com-po-nent
s []\T1/pcr/m/n/10 sys.calls[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sys.parents []\
T1/ptm/m/n/10 and
Underfull \hbox (badness 1584) in paragraph at lines 41442--41445
[]\T1/pcr/m/n/10 sys.call []\T1/ptm/m/n/10 re-turns a call, []\T1/pcr/m/n/10 sy
s.function []\T1/ptm/m/n/10 a func-tion def-i-ni-tion, and []\T1/pcr/m/n/10 sys
.frame []\T1/ptm/m/n/10 and
[597] [598]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 41580--41580
 []\T1/pcr/m/n/9 is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths
), keepNA=TRUE))[] 
[599]
Overfull \hbox (19.22812pt too wide) in paragraph at lines 41661--41661
 []\T1/pcr/m/n/9 print(Sys.setenv(R_TEST = "testit", "A+C" = 123))  # \TS1/cmtt
/m/n/9 `\T1/pcr/m/n/9 A+C\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 could also be used 
[600] [601] [602]
Underfull \hbox (badness 1082) in paragraph at lines 41806--41809
[]\T1/ptm/m/n/10 logical. If []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
Underfull \hbox (badness 10000) in paragraph at lines 41833--41835
[][][]\T1/pcr/m/n/10 source[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 lo
adNamespace[][][] []\T1/ptm/m/n/10 which is called from [][][]\T1/pcr/m/n/10 li
brary[][][](.) []\T1/ptm/m/n/10 and uses
[603] [604] [605]
Underfull \hbox (badness 1038) in paragraph at lines 41999--42002
[]\T1/ptm/m/n/10 a log-i-cal (not []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 ) in-di-c
at-ing whether mes-sages writ-ten to `\T1/pcr/m/n/10 stdout\T1/ptm/m/n/10 ' or
[606] [607] [608] [609] [610]
Underfull \hbox (badness 1442) in paragraph at lines 42364--42368
\T1/ptm/m/n/10 con-sider it to be piped or redi-rected: []\T1/pcr/m/n/10 stdout
 = TRUE []\T1/ptm/m/n/10 uses a pipe whereas []\T1/pcr/m/n/10 stdout =
[611] [612] [613] [614]
Underfull \hbox (badness 4096) in paragraph at lines 42618--42621
[]\T1/ptm/m/n/10 Use [][][]\T1/pcr/m/n/10 ftable[][][] []\T1/ptm/m/n/10 for pri
nt-ing (and more) of mul-ti-di-men-sional ta-bles. [][][]\T1/pcr/m/n/10 margin.
table[][][][]\T1/ptm/m/n/10 ,
[615]
Underfull \hbox (badness 7888) in paragraph at lines 42732--42736
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/pcr/m/n/10 bin []\T1/ptm/m/n/10 can
 have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/pcr/
m/n/10 length(bin) >
[616] [617] [618]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 42894--42894
 []            \T1/pcr/m/n/9 matrix(c(1L, 2L, NA, 3L), 2, dimnames = list(c("1"
, "2"), c("A", "B")))),[] 
Overfull \hbox (30.0281pt too wide) in paragraph at lines 42896--42896
 []            \T1/pcr/m/n/9 array(list(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 2\TS1/cm
tt/m/n/9 ` \T1/pcr/m/n/9 = structure(c(2, 5.75, 9.5, 13.25, 17), names = nq),[]
 
Overfull \hbox (55.67578pt too wide) in paragraph at lines 42898--42898
 []                 \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 4\TS1/cmtt/m/n/9 ` \T1/pcr/m
/n/9 = NULL, \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 5\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 = 
NULL), dim=4, dimnames=list(as.character(2:5)))))[] 
Underfull \hbox (badness 10000) in paragraph at lines 42911--42913
[]\T1/pcr/m/n/10 removeTaskCallback []\T1/ptm/m/n/10 un-registers a func-tion t
hat was reg-is-tered ear-lier via
[619]
Underfull \hbox (badness 10000) in paragraph at lines 42991--42994
[][][]\T1/pcr/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer .
[620] [621]
Underfull \hbox (badness 3872) in paragraph at lines 43109--43112
[]\T1/ptm/m/n/10 Duncan Tem-ple Lang (2001) \T1/ptm/m/it/10 Top-level Task Call
-backs in R\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / developer .
[622]
Underfull \hbox (badness 5475) in paragraph at lines 43175--43179
[][][]\T1/pcr/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/pcr/m/n/10 https : / /
[623] [624] [625] [626] [627] [628]
Underfull \hbox (badness 1655) in paragraph at lines 43598--43605
\T1/ptm/m/n/10 may also be known as `[]\T1/pcr/m/n/10 GB[]\T1/ptm/m/n/10 ', `[]
\T1/pcr/m/n/10 GB-Eire[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Belfast[]\T1
/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Guernsey[]\T1/ptm/m/n/10 ',
Underfull \hbox (badness 2253) in paragraph at lines 43606--43611
[]\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-turns a char-ac-ter vec-tor, se
e the ex-am-ples for typ-i-cal cases. It may
Underfull \hbox (badness 1655) in paragraph at lines 43606--43611
\T1/ptm/m/n/10 have an at-tribute []\T1/pcr/m/n/10 "Version"[]\T1/ptm/m/n/10 , 
some-thing like `[]\T1/pcr/m/n/10 "2023a"[]\T1/ptm/m/n/10 '. (It does on sys-te
ms us-ing
[629]
Underfull \hbox (badness 4467) in paragraph at lines 43656--43665
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-
turns the time-zone names known to the cur-rently se-
Underfull \hbox (badness 3954) in paragraph at lines 43656--43665
\T1/ptm/m/n/10 lected Ol-son/IANA database. The system-specific lo-ca-tion in t
he file sys-tem varies,
[630]
Underfull \hbox (badness 1337) in paragraph at lines 43759--43767
\T1/ptm/m/n/10 a file `\T1/pcr/m/n/10 localtime\T1/ptm/m/n/10 ', usu-ally un-de
r `\T1/pcr/m/n/10 /etc\T1/ptm/m/n/10 ' (but pos-si-bly un-der `\T1/pcr/m/n/10 /
usr/local/etc\T1/ptm/m/n/10 ' or
Underfull \hbox (badness 10000) in paragraph at lines 43768--43771
[]\T1/ptm/m/n/10 `Because the time zone iden-ti-fier is ex-tracted from the sym
-link tar-get name of
[631]
Underfull \hbox (badness 3460) in paragraph at lines 43824--43827
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / data . iana . org /
Underfull \hbox (badness 4429) in paragraph at lines 43828--43830
[][][]$\T1/pcr/m/n/10 https : / / data . iana . org / time-[]zones / theory . h
tml$[][] \T1/ptm/m/n/10 for the `rules' of the Ol-
Overfull \hbox (31.3804pt too wide) in paragraph at lines 43837--43837
 []\T1/pcr/m/n/9 ## typically some acronyms/aliases such as "UTC", "NZ", "MET",
 "Eire", ..., but[] 
[632] [633] [634] [635] [636]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 44180--44180
 []\T1/pcr/m/n/9 trace(pt, tracer = quote(cat(sprintf("tracing pt(*, ncp = %.15
g)\n", ncp))),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 44182--44182
 []\T1/pcr/m/n/9 power.t.test(20, 1, power=0.8, sd=NULL)  ##--> showing the ncp
 root finding:[] 
[637] [638]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44282--44282
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44284--44284
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
[639] [640] [641]
Underfull \hbox (badness 6542) in paragraph at lines 44558--44560
[]\T1/pcr/m/n/10 cospi(x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sinpi(x)[]\T1/ptm/
m/n/10 , and []\T1/pcr/m/n/10 tanpi(x)[]\T1/ptm/m/n/10 , com-pute []\T1/pcr/m/n
/10 cos(pi*x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sin(pi*x)[]\T1/ptm/m/n/10 , an
d
[642] [643]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 44677--44677
 []\T1/pcr/m/n/10 trimws(x, which = c("both", "left", "right"), whitespace = "[
 \t\r\n]") 
[644]
Underfull \hbox (badness 1708) in paragraph at lines 44745--44753
[]\T1/pcr/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
 er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 3713) in paragraph at lines 44745--44753
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/pcr/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[645]
Underfull \hbox (badness 4859) in paragraph at lines 44785--44790
[][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 for set-ting er-ror han-dle
rs and sup-press-ing the print-ing of er-ror mes-sages;
[646]
Underfull \hbox (badness 3895) in paragraph at lines 44847--44859
[]\T1/ptm/m/n/10 A char-ac-ter string. The pos-si-ble val-ues are listed in the
 struc-ture []\T1/pcr/m/n/10 TypeTable []\T1/ptm/m/n/10 in
Underfull \hbox (badness 1303) in paragraph at lines 44847--44859
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/main/util.c\T1/ptm/m/n/10 '. Cur-rent val-ue
s are the vec-tor types []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "integer"[]\T1/ptm/m/n/10 ,
[647] [648] [649] [650] [651]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 45195--45195
 []\T1/pcr/m/n/9 ll <- list(as.name("sinc"), quote( a + b ), 1:10, letters, exp
ression(1+x))[] 
[652] [653]
Underfull \hbox (badness 1137) in paragraph at lines 45289--45296
[]\T1/ptm/m/n/10 When a func-tion call-ing []\T1/pcr/m/n/10 UseMethod("fun") []
\T1/ptm/m/n/10 is ap-plied to an ob-ject with class vec-tor
[654] [655] [656] [657] [658]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 45667--45667
 []\T1/pcr/m/n/9 (xx <- intToUtf8(x, , TRUE)) # will only display in some local
es and fonts[] 
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 []\T1/pcr/m/n/9 system(paste("od -x", foo)) # 2-byte units, correct on little-
endian platforms[] 
[659]
Underfull \hbox (badness 2057) in paragraph at lines 45742--45748
[][][]\T1/pcr/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/pcr/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3861) in paragraph at lines 45751--45756
[][][]\T1/pcr/m/n/10 dir.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 di
r.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 normalizePath[][][][]\T1/
ptm/m/n/10 , [][][]\T1/pcr/m/n/10 path.expand[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 pipe[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Sys.glob[][][][]\
T1/ptm/m/n/10 ,
[660]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 45844--45844
 []\T1/pcr/m/n/9 try( substr(x, 1,1) ) # gives \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 in
valid multibyte string\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 error in a UTF-8 locale[] 
[661]
Underfull \hbox (badness 1803) in paragraph at lines 45907--45910
[]\T1/ptm/m/n/10 The atomic modes are []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric" []\
T1/ptm/m/n/10 (syn-onym []\T1/pcr/m/n/10 "double"[]\T1/ptm/m/n/10 ),
Underfull \hbox (badness 3471) in paragraph at lines 45911--45917
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 mode = "any"[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 is.vector []\T1/ptm/m/n/10 may re-turn []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/
n/10 for the atomic modes, [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 and
[662] [663] [664] [665]
Underfull \hbox (badness 3668) in paragraph at lines 46140--46142
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[666]
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 []      \T1/pcr/m/n/10 header = ngettext(n, "Warning message:\n", "Warning mes
sages:\n"),[] 
[667]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 46321--46321
 []\T1/pcr/m/n/9 ## at the end prints all three warnings, from the \TS1/pcr/m/n
/9 '\T1/pcr/m/n/9 option(warn = 0)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 above[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 46329--46329
 []\T1/pcr/m/n/9 x <- 1:36; for(n in 1:13) for(m in 1:12) A <- matrix(x, n,m) #
 There were 105 warnings ...[] 
[668]
Underfull \hbox (badness 1783) in paragraph at lines 46394--46396
[]\T1/pcr/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 months []\T1/pt
m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[669]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 46424--46424
 []\T1/pcr/m/n/9 ## Show how easily you get month, day, year, day (of {month, w
eek, yr}), ... :[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 46436--46436
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Even simpler:  Date -> Matrix
 - dropping time info {sec,min,hour, isdst}[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 46439--46439
 []\T1/pcr/m/n/9 d2mat(seq(as.Date("2000-02-02"), by=1, length.out=30)) # has R
 1.0.0\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s release date[] 
[670]
Underfull \hbox (badness 10000) in paragraph at lines 46501--46506
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 arr.ind == TRUE []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 x []\T1/ptm/m/n/10 is an [][][]\T1/pcr/m/n/10 array[][][] []\T1/ptm
/m/n/10 (has a [][][]\T1/pcr/m/n/10 dim[][][] []\T1/ptm/m/n/10 at-tribute), the
 re-sult is
Underfull \hbox (badness 2564) in paragraph at lines 46501--46506
[]\T1/pcr/m/n/10 arrayInd(which(x), dim(x), dimnames(x))[]\T1/ptm/m/n/10 , name
ly a ma-trix whose rows each
[671]
Underfull \hbox (badness 2818) in paragraph at lines 46597--46603
[]\T1/ptm/m/n/10 For a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 vec-
tor []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with both []\T1/pcr/m/n/10 FALSE []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 val-ues, []\T1/pcr/m/n/10
 which.min(x) []\T1/ptm/m/n/10 and
[672]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 46632--46632
 []\T1/pcr/m/n/9 ## Find the first occurrence, i.e. the first TRUE, if there is
 at least one:[] 
[673] [674] [675] [676] [677] [678]
Underfull \hbox (badness 2846) in paragraph at lines 47091--47095
[]\T1/pcr/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[679]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 47131--47131
 []\T1/pcr/m/n/9 .packages(all.available = TRUE) # return all available as char
acter vector[] 
Underfull \hbox (badness 3209) in paragraph at lines 47152--47156
[]\T1/pcr/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[680]) (./compiler-pkg.tex
Chapter 2.
[681]
Underfull \hbox (badness 2884) in paragraph at lines 106--120
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 options []\T1/ptm/m/n/10 ar-gu-ment can b
e used to con-trol com-piler op-er-a-tion. There are cur-
Underfull \hbox (badness 10000) in paragraph at lines 106--120
\T1/ptm/m/n/10 rently four op-tions: []\T1/pcr/m/n/10 optimize[]\T1/ptm/m/n/10 
, []\T1/pcr/m/n/10 suppressAll[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressUndef
ined[]\T1/ptm/m/n/10 , and
[682] [683] [684]) (./datasets-pkg.tex
Chapter 3.
[685] [686] [687] [688] [689]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 301--301
 []  \T1/pcr/m/n/9 plot(ff, data = anscombe, col = "red", pch = 21, bg = "orang
e", cex = 1.2,[] 
[690]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 379--379
 []\T1/pcr/m/n/9 coplot(accel ~ dist | as.factor(event), data = attenu, show.gi
ven = FALSE)[] 
Underfull \vbox (badness 1472) has occurred while \output is active [691]
[692] [693] [694]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 617--617
 []           \T1/pcr/m/n/9 start = c(lrc = log(.35)), algorithm = "plinear", t
race = TRUE)[] 
[695]
Underfull \hbox (badness 4779) in paragraph at lines 704--707
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[696] [697]
Underfull \hbox (badness 4779) in paragraph at lines 837--840
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[698] [699] [700]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[701]
Underfull \hbox (badness 4779) in paragraph at lines 1152--1155
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[702] [703] [704] [705] [706]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1464--1464
 []\T1/pcr/m/n/9 plot(names(te), te, type = "h", main = f.tit, xlab = "Eruption
 time (sec)")[] 
[707] [708]
Underfull \hbox (badness 10000) in paragraph at lines 1549--1552
[]\T1/ptm/m/n/10 Finally, []\T1/pcr/m/n/10 freeny []\T1/ptm/m/n/10 is a data fr
ame with vari-ables []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lag.q
uarterly.revenue[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2903) in paragraph at lines 1549--1552
[]\T1/pcr/m/n/10 price.index[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 income.level[]\
T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 market.potential []\T1/ptm/m/n/10 ob-taine
d from the above
[709] [710] [711]
Underfull \hbox (badness 4779) in paragraph at lines 1738--1741
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[712]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1832--1832
 []\T1/pcr/m/n/9 model1 <- glm(case ~ spontaneous+induced, data = infert, famil
y = binomial())[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1840--1840
 []  \T1/pcr/m/n/9 model3 <- clogit(case ~ spontaneous+induced+strata(stratum),
 data = infert)[] 
[713] [714]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1956--1956
 []                                        \T1/pcr/m/n/9 sub(" W.",".Width", dn
i3[[2]])))),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1957--1957
 []    \T1/pcr/m/n/9 Species = gl(3, 50, labels = sub("S", "s", sub("V", "v", d
ni3[[3]]))))[] 
[715] [716] [717] [718]
Underfull \hbox (badness 4779) in paragraph at lines 2160--2163
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[719] [720] [721]
Overfull \vbox (4.29591pt too high) has occurred while \output is active
[722] [723] [724] [725] [726]
Underfull \hbox (badness 4779) in paragraph at lines 2725--2728
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[727]
Overfull \vbox (13.87083pt too high) has occurred while \output is active
[728]
Underfull \vbox (badness 2376) has occurred while \output is active [729]
[730] [731] [732] [733]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3154--3154
 []\T1/pcr/m/n/9 pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main = 
1.2, pch = ".")[] 
[734] [735] [736] [737] [738] [739]
Overfull \hbox (47.58038pt too wide) in paragraph at lines 3505--3505
 []\T1/pcr/m/n/9 ## Alaska and Hawaii are placed just off the West Coast (for c
ompact map drawing):[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 3507--3507
 []\T1/pcr/m/n/9 ## state.center2 := version of state.center with "correct" coo
rdinates for AK & HI:[] 
Overfull \hbox (85.38034pt too wide) in paragraph at lines 3508--3508
 []\T1/pcr/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
[740] [741]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3639--3639
 []          \T1/pcr/m/n/9 ## The yearly series *is* close to the averages of t
he monthly one:[] 
[742] [743] [744]
Underfull \hbox (badness 4779) in paragraph at lines 3787--3790
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[745] [746] [747]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3996--3996
 []       \T1/pcr/m/n/9 xlab = "ToothGrowth data: length vs dose, given type of
 supplement")[] 
Underfull \hbox (badness 10000) in paragraph at lines 4034--4036
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/pcr/m/n/10 h
ttps : / / web . archive . org / web /
Underfull \hbox (badness 10000) in paragraph at lines 4034--4036
\T1/pcr/m/n/10 20110523225828 / http : / / www . ltrr . arizona . edu / ~hallma
n / sitephotos /
[748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759]
[760] [761]) (./grDevices-pkg.tex [762]
Chapter 4.
[763] [764] [765] [766]
Underfull \hbox (badness 4752) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/pcr/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/pcr/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
[767] [768] [769] [770]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 519--519
 []\T1/pcr/m/n/10 cairo_pdf(filename = if(onefile) "Rplots.pdf" else "Rplot%03d
.pdf",[] 
[771] [772] [773] [774] [775] [776] [777] [778] [779] [780]
Underfull \hbox (badness 5175) in paragraph at lines 1193--1195
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[781] [782] [783]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1364--1364
 []\T1/pcr/m/n/9 zapsmall(lab <- convertColor(cols, from = "sRGB", to = "Lab", 
scale.in = 255))[] 
[784] [785] [786]
Underfull \hbox (badness 3302) in paragraph at lines 1625--1629
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
Underfull \hbox (badness 10000) in paragraph at lines 1625--1629
[]\T1/pcr/m/n/10 c("LinearGradient", "RadialGradient", "TilingPattern")
[787] [788] [789] [790] [791]
Underfull \hbox (badness 1565) in paragraph at lines 1916--1921
[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 dev.print []\T1/ptm/m/n/10 i
s to pro-duce and print a postscript copy. This will not
Underfull \hbox (badness 1354) in paragraph at lines 1916--1921
\T1/ptm/m/n/10 sys-tem: see [][][]\T1/pcr/m/n/10 postscript[][][] []\T1/ptm/m/n
/10 for how to set this up. Win-dows users may pre-fer to use
[792]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 1999--1999
 []\T1/pcr/m/n/10 dev2bitmap(file, type = "png16m", height = 7, width = 7, res 
= 72,[] 
[793]
Underfull \hbox (badness 1184) in paragraph at lines 2040--2050
[]\T1/ptm/m/n/10 The types avail-able will de-pend on the ver-sion of []\T1/pcr
/m/n/10 ghostscript[]\T1/ptm/m/n/10 , but are likely to in-
Underfull \hbox (badness 2057) in paragraph at lines 2040--2050
[]\T1/pcr/m/n/10 "tiffg4"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffgray"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "tifflzw"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffp
ack"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiff12nc"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "tiff24nc"[]\T1/ptm/m/n/10 ,
[794]
Underfull \hbox (badness 10000) in paragraph at lines 2152--2154
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[795] [796]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2288--2288
 []\T1/pcr/m/n/10 embedGlyphs(file, glyphInfo, outfile = file, options = charac
ter())[] 
[797]
Underfull \hbox (badness 6758) in paragraph at lines 2338--2341
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[798] [799]
Underfull \hbox (badness 2326) in paragraph at lines 2456--2466
[]\T1/ptm/m/n/10 are given, then it uses those in a call to []\T1/pcr/m/n/10 se
tGraphicsEventHandlers []\T1/ptm/m/n/10 to re-place
Underfull \hbox (badness 2318) in paragraph at lines 2456--2466
\T1/ptm/m/n/10 any ex-ist-ing han-dlers in the cur-rent de-vice. This is for co
m-pat-i-bil-ity with pre-2.12.0
Underfull \hbox (badness 2460) in paragraph at lines 2456--2466
\T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions. The cur-rent nor-mal way to set up e
vent han-dlers is to set them us-ing
Underfull \hbox (badness 1221) in paragraph at lines 2456--2466
[]\T1/pcr/m/n/10 setGraphicsEventHandlers []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 
setGraphicsEventEnv []\T1/ptm/m/n/10 on one or more graph-ics
[800] [801]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 2559--2559
 []\T1/pcr/m/n/9 dragplot <- function(..., xlim = NULL, ylim = NULL, xaxs = "r"
, yaxs = "r") {[] 
Underfull \vbox (badness 10000) has occurred while \output is active [802]
[803] [804]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 2815--2815
 []\T1/pcr/m/n/10 gray.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE) 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 2816--2816
 []\T1/pcr/m/n/10 grey.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE)[] 
[805] [806] [807] [808] [809]
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Underfull \vbox (badness 10000) has occurred while \output is active [810]
[811] [812] [813] [814]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3422--3422
 []\T1/pcr/m/n/10 colorConverter(toXYZ, fromXYZ, name, white = NULL, vectorized
 = FALSE)[] 
[815]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3506--3506
 []\T1/pcr/m/n/9 zapsmall(luv <- convertColor(cols, from = "sRGB", to = "Luv", 
scale.in = 255))[] 
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 []\T1/pcr/m/n/9 (hex <- convertColor(luv, from = "Luv",  to = hexcolor, scale.
out = NULL))[] 
[816] [817] [818]
Underfull \hbox (badness 10000) in paragraph at lines 3665--3671
[]\T1/pcr/m/n/10 nclass.FD []\T1/ptm/m/n/10 uses the Freedman-Diaconis choice b
ased on the inter-quartile range
[819]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 3740--3740
 []\T1/pcr/m/n/10 palette.colors(n = NULL, palette = "Okabe-Ito", alpha, recycl
e = FALSE)[] 
[820]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3824--3824
 []\T1/pcr/m/n/9 (palette(gray(seq(0,.9,length.out = 25)))) # gray scales; prin
t old palette[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3844--3844
 []\T1/pcr/m/n/9 ## Demonstrate the colors 1:8 in different palettes using a cu
stom matplot()[] 
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 []    \T1/pcr/m/n/9 matplot(x, type = "l", lwd = 4, lty = 1, col = 1:8, ylab =
 "", main=main)[] 
[821]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3907--3907
 []\T1/pcr/m/n/10 hcl.colors(n, palette = "viridis", alpha = NULL, rev = FALSE,
 fixup = TRUE) 
[822]
Underfull \hbox (badness 8170) in paragraph at lines 3936--3939
[]\T1/ptm/m/n/10 the type of palettes to list: []\T1/pcr/m/n/10 "qualitative"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sequential"[]\T1/ptm/m/n/10 ,
[823]
Underfull \hbox (badness 2189) in paragraph at lines 3997--4002
[]\T1/ptm/m/n/10 For ex-am-ple, []\T1/pcr/m/n/10 "Dark 3" []\T1/ptm/m/n/10 work
s well for shad-ing points or lines in up to five groups,
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\T1/pcr/m/n/10 wikipedia . org / w / index . php ? title = HCL _ color _ space 
& oldid = 883465135$[][]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
 give a C in-te-ger for-mat such as
[826] [827] [828] [829] [830]
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 fonts[]\T1/ptm/m/n/10 ,
[831] [832]pdfTeX warning (ext4): destination with the same identifier (name{Rf
n.symbol}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4681 \aliasA{symbol}{plotmath}{symbol}
                                         [833] [834] [835] [836] [837] [838]
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 []     \T1/pcr/m/n/10 compression = c("none", "rle", "lzw", "jpeg", "zip", "lz
w+p", "zip+p"),[] 
[839] [840]
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, [][]$\T1/pcr/m/n/10 https : / / ww
w . iso . org / standard / 34342 . html$[][]\T1/ptm/m/n/10 . See also
[841]
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height = 768)[] 
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[]\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
 give a []\T1/pcr/m/n/10 printf []\T1/ptm/m/n/10 for-mat such as
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[]\T1/ptm/m/n/10 as `\T1/pcr/m/n/10 "CP1250.enc"\T1/ptm/m/n/10 ' (Cen-tral Eu-r
o-pean), []\T1/pcr/m/n/10 "CP1251.enc"
[843] [844]
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[][][]\T1/pcr/m/n/10 postscriptFonts[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 Devices[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 check.options[][][]
 []\T1/ptm/m/n/10 which is called from both
[847] [848]
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[]\T1/pcr/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Bookman"[]\T1
/ptm/m/n/10 , []\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "He
lvetica"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10 
,
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[]\T1/pcr/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/pc
r/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "URWBookman"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusMon"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusSan" []\T1/ptm/m/n/10 (syn-onym []\T1/p
cr/m/n/10 "URWHelvetica"[]\T1/ptm/m/n/10 ),
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[]\T1/ptm/m/n/10 There are also map-pings for []\T1/pcr/m/n/10 "ComputerModern"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ComputerModernItalic" []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 "Japan1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1HeiMin"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1GothicBBB"[]\T1/ptm/m/n/10 , and []\T1/p
cr/m/n/10 "Japan1Ryumin" []\T1/ptm/m/n/10 for
[849]
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[]\T1/pcr/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/p
cr/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[850] [851]
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 []\T1/pcr/m/n/9 ## time ranges in diverse scales:% also in ../../../../tests/r
eg-tests-1c.R[] 
[852]
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 []\T1/pcr/m/n/10 quartz.save(file, type = "png", device = dev.cur(), dpi = 100
, ...)[] 
[853] [854]
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[]\T1/ptm/m/n/10 Calling []\T1/pcr/m/n/10 quartz() []\T1/ptm/m/n/10 sets [][][]
\T1/pcr/m/n/10 .Device[][][] []\T1/ptm/m/n/10 to []\T1/pcr/m/n/10 "quartz" []\T
1/ptm/m/n/10 for on-screen de-vices and to
[855] [856] [857] [858] [859]
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 []\T1/pcr/m/n/9 rgb((0:15)/15, green = 0, blue = 0, names = paste("red", 0:15,
 sep = "."))[] 
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[]\T1/pcr/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
[860] [861] [862] [863] [864] [865]
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 []\T1/pcr/m/n/10 windows(width, height, pointsize, record, rescale, xpinch, yp
inch, 
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 []\T1/pcr/m/n/10 win.metafile(filename = "", width = 7, height = 7, pointsize 
= 12,[] 
[866] [867] [868] [869]
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 record[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 rescale[]\T1/ptm/m/n/10
 ,
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[]\T1/pcr/m/n/10 xpinch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 ypinch[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 canvas[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 gamma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 xpos[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 ypos[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 buffered[]\T1/
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[]\T1/pcr/m/n/10 restoreConsole[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 clickToConfi
rm[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 
fillOddEven []\T1/ptm/m/n/10 and
[870]
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 []\T1/pcr/m/n/9 windows()  # make sure we have the right device type (availabl
e on Windows only)[] 
[871]
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[]\T1/ptm/m/n/10 The \T1/phv/m/n/10 R \T1/ptm/m/n/10 func-tion is a wrap-per fo
r two de-vices, one based on Xlib ([][]$\T1/pcr/m/n/10 https : / /
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\T1/pcr/m/n/10 en . wikipedia . org / wiki / Xlib$[][]\T1/ptm/m/n/10 ) and one 
us-ing cairo-graph-ics ([][]$\T1/pcr/m/n/10 https : / / www .
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family)[] 
[872]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[873]
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[]\T1/pcr/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
[874]
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[]\T1/ptm/m/n/10 Problems with in-cor-rect ren-der-ing of sym-bols (e.g., of []
\T1/pcr/m/n/10 quote(pi) []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 expression(10^degree)[]\T1/ptm/m/n/10 ) have been seen on Linu
x sys-tems which have the Wine
[875]
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[]\T1/pcr/m/n/10 type = "Xlib" []\T1/ptm/m/n/10 sup-ports `True-Color', `Pseu-d
o-Color', `GrayScale', []\T1/pcr/m/n/10 StaticGray []\T1/ptm/m/n/10 and
[876]
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[877] [878]
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[]\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica" []\T1
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 ,
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[]\T1/ptm/m/n/10 Windows users can make use of Win-FIG ([][]$\T1/pcr/m/n/10 htt
p : / / www . schmidt-[]web-[]berlin . de /
[879] [880]
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 []\T1/pcr/m/n/9 op <- options(warn = 2)# ==> warnings would be errors, we supp
ress the one "we know":[] 
[881]
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., []\T1/pcr/m/n/10
 number[i] []\T1/ptm/m/n/10 is the mul-ti-plic-ity of
[882] [883]) (./graphics-pkg.tex [884]
Chapter 5.
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[]\T1/ptm/m/n/10 For a com-plete list of func-tions with in-di-vid-ual help pag
es, use []\T1/pcr/m/n/10 library(help =
[885] [886] [887] [888] [889] [890] [891]
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 []  \T1/pcr/m/n/10 gap.axis <- if(perpendicular(side, las)) 0.25 else 1[] 
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[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 at = NULL[]\T1/ptm/m/n/10 , pretty tick 
mark lo-ca-tions are com-puted in-ter-nally (the same way
[892] [893]
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 []\T1/pcr/m/n/9 ## now shrink the window (in x- and y-direction) and observe t
he axis labels drawn[] 
[894]
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 []\T1/pcr/m/n/9 axis.Date(3, at = as.integer(as.Date("2023-04-01")), col.axis 
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0")) + 0.25,[] 
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gp = c(3,2,0))[] 
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 []\T1/pcr/m/n/9 plot(data.frame(HST, y = 1), xaxt = "n", xlab = "Hawaii Standa
rd Time (HST)")[] 
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[]\T1/ptm/m/n/10 numeric vec-tor of length three, de-fault-ing to [][][]\T1/pcr
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[][][]\T1/pcr/m/n/10 par[][][]("yaxp") []\T1/ptm/m/n/10 de-pend-ing on the []\T
1/pcr/m/n/10 side []\T1/ptm/m/n/10 ar-gu-ment ([]\T1/pcr/m/n/10 par("xaxp") []\
T1/ptm/m/n/10 if
[896] [897]
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intLog = 5))[] 
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NULL, ...)[] 
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[][][]\T1/pcr/m/n/10 plot[][][](..., type = "h")[]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 dotchart[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 hist[][][] []\T1
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e.
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 []        \T1/pcr/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
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 []\T1/pcr/m/n/9 (xt <- xtabs(Freq ~ Survived + Class + Sex, d.Titanic, subset 
= Age=="Adult"))[] 
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 []\T1/pcr/m/n/9 mosaicplot(xt[,,"Male"], main = "mosaicplot(Freq ~ Class + Sur
vived, *)", color=TRUE)[] 
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[902] [903] [904]
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 []\T1/pcr/m/n/9 # *add* notches (somewhat funny here <--> warning "notches .. 
outside hinges"):[] 
[905] [906] [907]
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\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 horizontal []\T1/ptm/m/n/10 is false, and 
[]\T1/pcr/m/n/10 xlim []\T1/ptm/m/n/10 hor-i-zon-tally. []\T1/pcr/m/n/10 xaxt[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yaxt[]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 whisker line type (de-fault: []\T1/pcr/m/n/10 "dashed"[]\T1/pt
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[908]
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 []\T1/pcr/m/n/9 boxplot(z,   col.axis = "skyblue3", main = "boxplot(*, col.axi
s=..,main=..)")[] 
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 []\T1/pcr/m/n/9 plot(z[[1]], col.axis = "skyblue3", main =    "plot(*, col.axi
s=..,main=..)")[] 
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 []\T1/pcr/m/n/9 splus <- list(boxwex = 0.4, staplewex = 1, outwex = 1, boxfill
 = "grey40",[] 
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 []              \T1/pcr/m/n/9 medlwd = 3, medcol = "white", whisklty = 3, outl
ty = 1, outpch = NA)[] 
[909]
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 []  \T1/pcr/m/n/10 yaxlabels = NULL, xlim = NULL, ylim = c(0, 1), weights = NU
LL, ...)[] 
[910] [911] [912] [913]
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[][][]\T1/pcr/m/n/10 contourLines[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
filled.contour[][][] []\T1/ptm/m/n/10 for color-filled con-tours, [][][]\T1/pcr
/m/n/10 contourplot[][][] []\T1/ptm/m/n/10 (and
[914]
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d = "simple",[] 
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 []\T1/pcr/m/n/9 contour(z, levels=levs[-c(1,length(levs))], col = 1:5, lwd = 1
:3 *1.5, lty = 1:3)[] 
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 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
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 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
[915] [916]
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 []\T1/pcr/m/n/10 coplot(formula, data, given.values, panel = points, rows, col
umns, 
[917] [918]
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 []\T1/pcr/m/n/9 coplot(lat ~ long | depth, data = quakes, given.values = given
.depth, rows = 1)[] 
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 []\T1/pcr/m/n/9 coplot(ll.dm, data = quakes, number = c(4, 7), show.given = c(
TRUE, FALSE))[] 
[919] [920]
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 []\T1/pcr/m/n/10 dotchart(x, labels = NULL, groups = NULL, gdata = NULL, offse
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 []         \T1/pcr/m/n/10 ann = par("ann"), xaxt = par("xaxt"), frame.plot = T
RUE, log = "",[] 
[921]
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[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/pcr/m/n/10 
"n" []\T1/ptm/m/n/10 to sup-press and see also
[922]
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rRd", rev = TRUE),[] 
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[923]
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[][][]\T1/pcr/m/n/10 contour[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 image
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 hcl.colors[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 gray.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 palette[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 contourplot[][][] []\T1/p
tm/m/n/10 and
[924] [925] [926] [927]
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 []\T1/pcr/m/n/9 ## maybe change the desired number of tick marks:  par(lab = c
(mx, my, 7))[] 
[928]
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 []     \T1/pcr/m/n/10 density = NULL, angle = 45, col = "lightgray", border = 
NULL,[] 
[929] [930]
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\T1/pcr/m/n/10 1)[]\T1/ptm/m/n/10 , they are the rel-a-tive fre-quen-cies []\T1
/pcr/m/n/10 counts/n []\T1/ptm/m/n/10 and in gen-eral sat-isfy
[931]
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 []\T1/pcr/m/n/9 ## Extreme outliers; the "FD" rule would take very large numbe
r of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 breaks\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3032--3032
 []\T1/pcr/m/n/9 length(hh$breaks) ## typically 1 million -- though 1e6 was "a 
suggestion only"[] 
[932]
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[][][]\T1/ptm/m/n/10 graphical pa-ram-e-ters[][][], or ar-gu-ments to [][][]\T1
/pcr/m/n/10 hist.default[][][] []\T1/ptm/m/n/10 such as
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 []\T1/pcr/m/n/9 ## The default fuzz in hist.default()  "kills" this, with a "w
rong" message:[] 
[933] [934] [935]
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 []\T1/pcr/m/n/9 identifyPch <- function(x, y = NULL, n = length(x), plot = FAL
SE, pch = 19, ...)[] 
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 []        \T1/pcr/m/n/9 ans <- identify(x[!sel], y[!sel], labels = which(!sel)
, n = 1, plot = plot, ...)[] 
[936] [937]
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 useRaster []\T1/ptm/m/n/10 is not spec-i-f
ied, raster im-ages are used when the
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[][][]\T1/pcr/m/n/10 getOption[][][]("preferRaster") []\T1/ptm/m/n/10 is true, 
the grid is reg-u-lar and ei-ther
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[][][]\T1/pcr/m/n/10 dev.capabilities[][][]("rasterImage")$rasterImage []\T1/pt
m/m/n/10 is []\T1/pcr/m/n/10 "yes" []\T1/ptm/m/n/10 or it is
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 []\T1/pcr/m/n/9 # Visualize as matrix.  Need to transpose matrix and then flip
 it horizontally:[] 
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 []\T1/pcr/m/n/9 imageM <- function(m, grid = max(dim(m)) <= 25, asp = (nrow(m)
-1)/(ncol(m)-1), ...) {[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3496--3496
 []        \T1/pcr/m/n/9 axis(side, at=at, labels=as.character(j+1L), col="gray
", col.axis=1, ...)[] 
[938] [939] [940]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3653--3653
 []\T1/pcr/m/n/9 barplot(yhist$counts, axes = FALSE, xlim = c(0, top), space = 
0, horiz = TRUE)[] 
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 []       \T1/pcr/m/n/10 box.lwd = par("lwd"), box.lty = par("lty"), box.col = 
par("fg"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3676--3676
 []       \T1/pcr/m/n/10 text.font = NULL, merge = do.lines && has.pch, trace =
 FALSE,[] 
[941] [942] [943]
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 []  \T1/pcr/m/n/9 text  (1, y.leg[i] - 0.1, paste("cex=", formatC(cexv[i])), c
ex = 0.8, adj = 0)[] 
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 []  \T1/pcr/m/n/9 legend(3, y.leg[i], leg.txt, pch = "sSvV", col = c(1, 3), ce
x = cexv[i])[] 
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 []       \T1/pcr/m/n/9 cex = 1+(-1:2)/8, trace = TRUE)# trace: show computed l
engths & coords[] 
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 []  \T1/pcr/m/n/9 title("legend(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 top\TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 , lty = c(2, -1, 1), pch = c(NA, 3, 4), merge = TRUE)",[] 
[944]
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 []                      \T1/pcr/m/n/9 "text(c(3,3),2:3,\"c(rect(...)\")"), adj
 = c(0, 0.3))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3933--3933
 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Filled\TS1/pcr/m/n/9 ' \T1/pc
r/m/n/9 boxes -- see also example(barplot) which may call legend(*, fill=)[] 
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 []\T1/pcr/m/n/9 legend("topright", rownames(VADeaths), fill = gray.colors(nrow
(VADeaths)))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3946--3946
 []\T1/pcr/m/n/9 legend("bottomright", paste("sin(", 1:7, "pi * x)"), col = 1:7
, lty = 1:7,[] 
Underfull \vbox (badness 10000) has occurred while \output is active [945]
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 []\T1/pcr/m/n/9 legend(.4,1, "sin(c x)", pch = 21, pt.bg = "white", lty = 1, c
ol = "blue")[] 
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 []\T1/pcr/m/n/9 legend("topleft",     "(x,y)", pch=1, title= "topleft, inset =
 .05", inset = .05)[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3971--3971
 []\T1/pcr/m/n/9 legend("topright",    "(x,y)", pch=1, title= "topright, inset 
= .02",inset = .02)[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3979--3979
 []   \T1/pcr/m/n/9 plot(1, type = "n", axes = FALSE, ann = FALSE); title(paste
("text.font =",i))[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3989--3989
 []\T1/pcr/m/n/9 legend("bottomleft", c("This legend", "has", "optimally sized"
, "columns."),[] 
[946]
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[][][]\T1/pcr/m/n/10 lines.formula[][][] []\T1/ptm/m/n/10 for the for-mula meth
od; [][][]\T1/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , par-tic-u-larly for []\
T1/pcr/m/n/10 type %in%
[947] [948]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 4163--4163
 []        \T1/pcr/m/n/10 log = "", ..., add = FALSE, verbose = getOption("verb
ose"))[] 
[949] [950]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 4317--4317
 []\T1/pcr/m/n/9 nd <- length(dv <- seq(as.Date("1959-02-21"), by = "weeks", le
ngth.out = 100))[] 
[951]
Underfull \hbox (badness 3930) in paragraph at lines 4396--4398
[]\T1/ptm/m/n/10 The mag-ni-fi-ca-tion to be used for axis an-no-ta-tion, as a 
mul-ti-ple of
[952] [953] [954] [955] [956]
Underfull \hbox (badness 1286) in paragraph at lines 4707--4710
[]\T1/ptm/m/n/10 which draws the ti-tle. You may want to spec-ify []\T1/pcr/m/n
/10 oma []\T1/ptm/m/n/10 when chang-ing
Underfull \hbox (badness 3229) in paragraph at lines 4715--4720
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[957] [958]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4811--4811
 []\T1/pcr/m/n/9 pairs(USJudgeRatings, lower.panel = panel.smooth, upper.panel 
= panel.cor,[] 
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 []      \T1/pcr/m/n/9 main = "Lengths and Widths in [log]", line.main=1.5, oma
=c(2,2,3,2))[] 
[959]
Underfull \hbox (badness 1264) in paragraph at lines 5007--5020
\T1/ptm/m/n/10 func-tions such as [][][]\T1/pcr/m/n/10 plot.default[][][][]\T1/
ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.window[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lines[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 abline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 axis[][][][]\T1/ptm/m/n/10 ,
[960] [961] [962] [963]
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[964 </builddir/build/BUILD/R-rc/library/graphics/help/figures//mai.pdf>]
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[965 </builddir/build/BUILD/R-rc/library/graphics/help/figures//oma.pdf>]
[966] [967]
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 []\T1/pcr/m/n/9 c(prof.pilots = 16, lawyers = 11, farmers = 10, salesmen = 9, 
physicians = 9,[] 
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 []  \T1/pcr/m/n/9 mechanics = 6, policemen = 6, managers = 6, engineers = 5, t
eachers = 4,[] 
Underfull \vbox (badness 10000) has occurred while \output is active [968]
[969] [970] [971] [972] [973]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 5945--5945
 []\T1/pcr/m/n/9 pie(c(Sky = 78, "Sunny side of pyramid" = 17, "Shady side of p
yramid" = 5),[] 
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 []    \T1/pcr/m/n/9 init.angle = 315, col = c("deepskyblue", "yellow", "yellow
3"), border = FALSE)[] 
[974]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6005 \aliasA{plot}{plot.default}{plot}
                                         [975] [976] [977] [978] [979]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6337--6337
 []\T1/pcr/m/n/9 plot(weight ~ group, data = PlantGrowth)           # numeric v
ector ~ factor[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6343--6343
 []\T1/pcr/m/n/9 plot(PlantGrowth$group, axes = FALSE, main = "no axes")  # ext
remely silly[] 
[980] [981]
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 []               \T1/pcr/m/n/10 main = paste("Histogram of", paste(x$xname, co
llapse = "\n")),[] 
[982] [983] [984] [985]
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[]\T1/ptm/m/n/10 background (fill) color for the open plot sym-bols 21:25: see
[986] [987]
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[]\T1/ptm/m/n/10 character (or sym-bol) ex-pan-sion: a nu-mer-i-cal vec-tor. Th
is works as a mul-ti-ple of
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[][] 
[988 </builddir/build/BUILD/R-rc/library/graphics/help/figures//pch.pdf>]
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 []\T1/pcr/m/n/9 plot(x, sin(x), type = "o", pch = 21, bg = par("bg"), col = "b
lue", cex = .6,[] 
[989]
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 []    \T1/pcr/m/n/9 plot(rx, ry, type = "n", axes  =  FALSE, xlab = "", ylab =
 "", main = main)[] 
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[991]
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[]\T1/ptm/m/n/10 The code im-ple-ment-ing poly-gon shad-ing was do-nated by Kev
in Buhr
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 []  \T1/pcr/m/n/9 polygon(x, y, xpd = xpd, col = "orange", lty = 2, lwd = 2, b
order = "red")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7189--7189
 []\T1/pcr/m/n/9 yy <- c(c(0, cumsum(stats::rnorm(n))), rev(c(0, cumsum(stats::
rnorm(n)))))[] 
[992]
Underfull \hbox (badness 2600) in paragraph at lines 7246--7248
[]\T1/ptm/m/n/10 character value spec-i-fy-ing the path fill mode: ei-ther []\T
1/pcr/m/n/10 "winding" []\T1/ptm/m/n/10 or
[993] [994] [995] [996]
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 []\T1/pcr/m/n/9 rect(100+i, 300+i, 150+i, 380+i, col = rainbow(11, start = 0.7
, end = 0.1))[] 
[997] [998] [999] [1000] [1001] [1002]
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 []\T1/pcr/m/n/9 Lab.palette <- colorRampPalette(c("blue", "orange", "red"), sp
ace = "Lab")[] 
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 []\T1/pcr/m/n/9 ## label the 20 very lowest-density points,the "outliers" (wit
h obs.number):[] 
[1003]
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 []\T1/pcr/m/n/9 pairs(y, panel = function(...) smoothScatter(..., nrpoints = 0
, add = TRUE),[] 
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 []          \T1/pcr/m/n/10 xlim = NULL, ylim = c(0, 1), axes = TRUE, weights =
 NULL, ...)[] 
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 []          \T1/pcr/m/n/10 subset = NULL, weights = NULL, drop.unused.levels =
 FALSE)[] 
[1004] [1005] [1006] [1007] [1008]
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 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi
us  =  FALSE,[] 
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 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi
us  =  FALSE,[] 
[1009]
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 []      \T1/pcr/m/n/9 draw.segments = TRUE, col.segments = 0, col.stars = 1:10
, key.loc =  0:1,[] 
[1010] [1011]
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 []\T1/pcr/m/n/10 strwidth(s, units = "user", cex = NULL, font = NULL, vfont = 
NULL, ...) 
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 []\T1/pcr/m/n/10 strheight(s, units = "user", cex = NULL, font = NULL, vfont =
 NULL, ...)[] 
[1012] [1013]
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 []\T1/pcr/m/n/10 sunflowerplot(formula, data = NULL, xlab = NULL, ylab = NULL,
 ...,[] 
[1014]
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 number[i] == 1[]\T1/ptm/m/n/10 , a (sligh
tly en-larged) usual plot-ting sym-bol ([]\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 ) 
is drawn. For
[1015]
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 []\T1/pcr/m/n/9 sunflowerplot(iris[, 3:4], cex = .2, cex.fact = 1, size = .035
, seg.lwd = .8)[] 
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 []\T1/pcr/m/n/9 sunflowerplot(rnorm(100), rnorm(100), number = rpois(n = 100, 
lambda = 2),[] 
[1016] [1017]
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 []\T1/pcr/m/n/9 text(x, y, apply(format(round(z3, digits = 2)), 1, paste, coll
apse = ","),[] 
[1018] [1019] [1020]
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 []     \T1/pcr/m/n/9 "Le fran�ais, c\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 est fa�ile: 
R�gles, Libert�, Egalit�, Fraternit�...")[] 
Underfull \hbox (badness 1215) in paragraph at lines 9001--9003
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/pcr/m
/n/10 par(c("font.sub",
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[]\T1/ptm/m/n/10 The po-si-tions of []\T1/pcr/m/n/10 xlab[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sub []\T1/ptm/m/n/10 a
re []\T1/pcr/m/n/10 line []\T1/ptm/m/n/10 (de-fault for []\T1/pcr/m/n/10 xlab [
]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 be-ing
[1021]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni
ts}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9083 \HeaderA{units}{Graphical Units}{units}
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n with the same identifier (name{Rfn.units.1}) has been already used, duplicate
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                                               [1022]
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[]\T1/ptm/m/n/10 vectors con-tain-ing the co-or-di-nates of the ver-tices of th
e poly-gon. See
[1023] [1024]
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 []\T1/pcr/m/n/9 arrows(res$x[nr-3], res$y[nr-3], res$x[nr], res$y[nr], code = 
2, length = 0.1)[] 
[1025]) (./grid-pkg.tex [1026]
Chapter 6.
[1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036]
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[]\T1/ptm/m/n/10 Modification of the view-port (should all be valid ar-gu-ments
 to the
[1037] [1038] [1039] [1040] [1041] [1042]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1028--1028
 []                            \T1/pcr/m/n/9 width=unit(1, "inches"), height=un
it(1, "inches")))[] 
[1043] [1044] [1045]
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 []               \T1/pcr/m/n/9 vpList(vpStack(viewport(x=0.1, y=0.1, width=0.5
, height=0.5,[] 
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 []                                       \T1/pcr/m/n/9 just=c("left", "bottom"
), name="B"),[] 
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 []                              \T1/pcr/m/n/9 viewport(x=0.1, y=0.1, width=0.5
, height=0.5,[] 
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), name="C"),[] 
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, height=0.5,[] 
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 []                                       \T1/pcr/m/n/9 just=c("left", "bottom"
), name="D")),[] 
[1046] [1047] [1048] [1049]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a cir-cle grob (a graph-i-cal ob-ject 
de-scrib-ing a cir-cle), but only
[1050] [1051] [1052] [1053] [1054] [1055] [1056]
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 []  \T1/pcr/m/n/9 do.call("grid.curve", c(list(x1=.25, y1=.25, x2=.75, y2=.75)
, list(...)))[] 
[1057] [1058] [1059]
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 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.25, y=.75, gp=gpar(fill="bla
ck"), name="r1")[] 
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 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.5, y=.5, gp=gpar(fill="grey"
), name="r2")[] 
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 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.75, y=.25, gp=gpar(fill="whi
te"), name="r3")[] 
[1060]
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[]\T1/ptm/m/n/10 The meth-ods for grob and gTree call the generic hook func-tio
ns []\T1/pcr/m/n/10 preDrawDetails[]\T1/ptm/m/n/10 ,
[1061]
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[]\T1/ptm/m/n/10 Both func-tions call []\T1/pcr/m/n/10 editDetails []\T1/ptm/m/
n/10 to al-low a grob to per-form cus-tom ac-tions and
[1062] [1063] [1064]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a frame grob (a graph-i-cal ob-ject de
-scrib-ing a frame), but only
[1065] [1066] [1067]
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 []\T1/pcr/m/n/10 getGrob(gTree, gPath, strict = FALSE, grep = FALSE, global = 
FALSE)[] 
[1068]
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[]\T1/ptm/m/n/10 The jus-ti-fi-ca-tion of the glyphs rel-a-tive to the ([]\T1/p
cr/m/n/10 x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) lo-ca-tion. 
Can be
[1069]
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 []\T1/pcr/m/n/10 grid.grabExpr(expr, warn = 2, wrap = wrap.grobs, wrap.grobs =
 FALSE,[] 
[1070] [1071]
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 []                          \T1/pcr/m/n/9 children=gList(grob(name="child", vp
="vp1::vp2")),[] 
[1072]
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 []           \T1/pcr/m/n/10 default.units = "npc", gp=gpar(col = "grey"), vp =
 NULL)[] 
[1073] [1074]
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
[1075]
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[]\T1/ptm/m/n/10 Another pos-si-ble use of []\T1/pcr/m/n/10 grid.group() []\T1/
ptm/m/n/10 is to spec-ify both []\T1/pcr/m/n/10 src []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 dst []\T1/ptm/m/n/10 and com-bine
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[]\T1/ptm/m/n/10 is only drawn where it is NOT over-lapped by []\T1/pcr/m/n/10 
src[]\T1/ptm/m/n/10 . The fol-low-ing (ex-tended) Porter-
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[]\T1/pcr/m/n/10 "multiply"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "screen"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "overlay"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "darke
n"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lighten"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "color.dodge"[]\T1/ptm/m/n/10 ,
[1076]
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 []  \T1/pcr/m/n/9 mask <- as.mask(rectGrob(gp=gpar(col=NA, fill="grey50")), ty
pe="luminance")[] 
[1077]
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 []  \T1/pcr/m/n/9 pushViewport(viewport(layout=grid.layout(1, 1, widths=unit(1
, "inches"),[] 
[1078] [1079] [1080] [1081] [1082]
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 []                                       \T1/pcr/m/n/9 children=vpList(viewpor
t(name="vp2"))))[] 
[1083] [1084]
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 []\T1/pcr/m/n/9 pushViewport(viewport(x=0, y=0, width=0.25, height=0.25, just=
c("left", "bottom")))[] 
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[]\T1/ptm/m/n/10 There are two hooks called []\T1/pcr/m/n/10 "before.grid.newpa
ge" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "grid.newpage" []\T1/ptm/m/n/10 (see
[1085] [1086]
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 []          \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border =
 NULL,[] 
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 []          \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border =
 NULL,[] 
[1087] [1088] [1089]
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 []                \T1/pcr/m/n/9 "Nested rectangles, outer clockwise, inner ant
i-clockwise")[] 
[1090]
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 []                \T1/pcr/m/n/9 "Overlapping rectangles, one clockwise, other 
anti-clockwise")[] 
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 []\T1/pcr/m/n/9 # Not specifying pathId will treat all points as part of the s
ame path, thus[] 
[1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101]
[1102]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1103] [1104] [1105] [1106]
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 []                            \T1/pcr/m/n/9 width=unit(1, "inches"), height=un
it(1, "inches")))[] 
[1107] [1108]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1109]
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 []\T1/pcr/m/n/9 grid.text(quote(frac(e^{-x^2/2}, sqrt(2*pi))), x=x, y=y, rot=s
tats::runif(20, -45,45),[] 
[1110] [1111] [1112] [1113] [1114] [1115]
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 gridCoords []\T1/ptm/m/n/10 a nu-meric ve
c-tor. For []\T1/pcr/m/n/10 gridGrobCoords []\T1/ptm/m/n/10 a list
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\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 "GridCoords" []\T1/ptm/m/n/10 ob-jects. For 
[]\T1/pcr/m/n/10 gridGTreeCoords []\T1/ptm/m/n/10 a list of ei-ther
[1116]
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[]\T1/ptm/m/n/10 Either a []\T1/pcr/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) or a
[1117] [1118] [1119]
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 grid.legend()[]\T1/ptm/m/n/10 : all the a
r-gu-ments above are passed to
[1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130]
[1131] [1132] [1133] [1134] [1135] [1136]
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 []\T1/pcr/m/n/9 unitType(min(unit(1, "in"), unit(1, "npc") + unit(1, "mm")), r
ecurse=TRUE)[] 
[1137] [1138]
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 []\T1/pcr/m/n/10 viewportTransform(group, shear=groupShear(), flip=groupFlip()
, device=TRUE) 
[1139]
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[]\T1/ptm/m/n/10 This func-tion can be used to gen-er-ate a view-port path for 
use in []\T1/pcr/m/n/10 downViewport []\T1/ptm/m/n/10 or
[1140]
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[][][]\T1/pcr/m/n/10 viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 push
Viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 popViewport[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 seekViewport[][][][]\T1/ptm/m/n/10 ,
[1141] [1142] [1143]
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[1145] [1146]
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 []\T1/pcr/m/n/9 invisible(lapply(trace, function(t) grid.lines(t$x, t$y, gp=gp
ar(col="red"))))[] 
[1147]) (./methods-pkg.tex [1148]
Chapter 7.
[1149] [1150]
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[]\T1/ptm/m/n/10 func-tion. See that doc-u-men-ta-tion also for de-tails of how
 co-erce meth-ods work. Use
[1151] [1152] [1153]
Underfull \hbox (badness 1348) in paragraph at lines 392--395
[][][]\T1/pcr/m/n/10 GroupGenericFunctions[][][] []\T1/ptm/m/n/10 for other in-
for-ma-tion about group generic func-tions; [][]Meth-
[1154] [1155]
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 []\T1/pcr/m/n/9 ## vector.  The next method will always be the default, usuall
y a primitive.[] 
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 []\T1/pcr/m/n/9 ## For arithmetic and one rnum with anything, callNextMethod w
ith no arguments[] 
[1156]
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 []\T1/pcr/m/n/9 ## Simple examples to illustrate callNextMethod with and witho
ut arguments[] 
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Overfull \hbox (25.98041pt too wide) in paragraph at lines 637--637
 []\T1/pcr/m/n/9 ## call f() with 2 arguments: callNextMethod passes both to th
e default method[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 640--640
 []\T1/pcr/m/n/9 ## call f() with 1 argument:  the default "B0" is not passed b
y callNextMethod[] 
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 []\T1/pcr/m/n/9 ## uses the class of the *argument* to consistently select the
 "B0" method[] 
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 []\T1/pcr/m/n/9 ## Although the argument here is numeric, it\TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 s still the "B0" method that\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s called[
] 
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[1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169]
[1170] [1171] [1172]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1794--1794
 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i), sum(1:10, 1+1i))) # the "N
umber" method[] 
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i, TRUE), c(1:10, 1+1i, TRUE))
) # the default[] 
[1173] [1174]
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/pcr/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
[1175] [1176] [1177]
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/pcr/m/n/10 where =
[1178] [1179]
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[]\T1/ptm/m/n/10 To see the ac-tual ta-ble (an [][][]\T1/pcr/m/n/10 environment
[][][][]\T1/ptm/m/n/10 ) used for meth-ods dis-patch, call
[1180] [1181] [1182]
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/pcr/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 Object of class []\T1/pcr/m/n/10 "optionalMethod" []\T1/ptm/m/
n/10 (a union of classes []\T1/pcr/m/n/10 "function" []\T1/ptm/m/n/10 and
[1183]
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 []\T1/pcr/m/n/10 removeMethods(f, where = topenv(parent.frame()), all = missin
g(where))[] 
[1184] [1185] [1186]
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 []\T1/pcr/m/n/9 ## get the function "myFun" -- throw an error if 0 or > 1 vers
ions visible:[] 
[1187] [1188] [1189] [1190] [1191] [1192] [1193]
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[]\T1/ptm/m/n/10 Function []\T1/pcr/m/n/10 implicitGeneric() []\T1/ptm/m/n/10 r
e-turns the im-plicit generic ver-sion,
Underfull \hbox (badness 6268) in paragraph at lines 3402--3407
[]\T1/pcr/m/n/10 setGenericImplicit() []\T1/ptm/m/n/10 turns a generic im-plici
t, []\T1/pcr/m/n/10 prohibitGeneric() []\T1/ptm/m/n/10 pre-vents
[1194] [1195]
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[]\T1/ptm/m/n/10 For a class (or class def-i-ni-tion, see [][][]\T1/pcr/m/n/10 
getClass[][][] []\T1/ptm/m/n/10 and the de-scrip-tion of class
[1196]
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[]
[1197] [1198]
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[] \T1/pcr/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude =
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[]\T1/pcr/m/n/10 setMethod("plot", c("Pos", "missing"), function(x, y, ...) {
[1199]
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[]\T1/pcr/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
,
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[]\T1/ptm/m/n/10 A call to [][][]\T1/pcr/m/n/10 selectSuperClasses[][][](cl) []
\T1/ptm/m/n/10 re-turns a list of su-per-classes, sim-i-larly to
[1200] [1201] [1202] [1203] [1204] [1205]
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 []\T1/pcr/m/n/10 makeClassRepresentation(name, slots=list(), superClasses=char
acter(), 
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 []                        \T1/pcr/m/n/10 prototype=NULL, package, validity, ac
cess,[] 
[1206]
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 []\T1/pcr/m/n/10 method.skeleton(generic, signature, file, external = FALSE, w
here) 
[1207] [1208] [1209]
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[]\T1/ptm/m/n/10 For ad-di-tional in-for-ma-tion see doc-u-men-ta-tion for the 
im-por-tant steps: ([][][]\T1/pcr/m/n/10 setMethod[][][]()[]\T1/ptm/m/n/10 ,
[1210] [1211] [1212]
Underfull \hbox (badness 10000) in paragraph at lines 4815--4824
[]\T1/ptm/m/n/10 In prin-ci-ple, a generic func-tion could be any func-tion tha
t eval-u-ates a call to
[1213] [1214] [1215] [1216]
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 []\T1/pcr/m/n/9 f3 <- function(x)UseMethod("f3") # an S3 generic to illustrate
 inheritance[] 
[1217]
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 []\T1/pcr/m/n/9 stopifnot(identical(abs(y), abs(x))) # (version 2.9.0 or earli
er fails here)[] 
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 []\T1/pcr/m/n/9 ## The S3 method for classA and the closest inherited S3 metho
d for classB[] 
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[1219]
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[]\T1/pcr/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...)
[1220] [1221]
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[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1222] [1223] [1224]
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1225] [1226] [1227] [1228] [1229] [1230]
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[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 $initialize() []\T1/p
tm/m/n/10 is equiv-a-lent to in-vok-ing the method
[1231] [1232]
Underfull \hbox (badness 1248) in paragraph at lines 6351--6355
[]\T1/ptm/m/n/10 Typically, a spe-cial-ized []\T1/pcr/m/n/10 $initialize() []\T
1/ptm/m/n/10 method car-ries out its own com-pu-ta-tions,
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\T1/ptm/m/n/10 then in-vokes []\T1/pcr/m/n/10 $initFields() []\T1/ptm/m/n/10 to
 per-form stan-dard ini-tial-iza-tion, as shown in the
[1233]
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[]\T1/ptm/m/n/10 This method is equiv-a-lent to call-ing the gen-er-a-tor func-
tion re-turned by
[1234] [1235]
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[]\T1/ptm/m/n/10 Reference classes can have va-lid-ity meth-ods in the same sen
se as any S4 class (see
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[][][]\T1/pcr/m/n/10 setValidity[][][][]\T1/ptm/m/n/10 ). Such meth-ods are of-
ten a good idea; they will be called by call-ing
[1236]
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[1238] [1239]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6981 \aliasA{S4}{S3Part}{S4}
                               [1240]
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 []\T1/pcr/m/n/10 ## Create a new object from the class or use the replacement 
version of as().[] 
[1241] [1242]
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 []\T1/pcr/m/n/9 fit <- lm(sepal ~ Petal.Length + Petal.Width + Species, data =
 datasets::iris)[] 
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 []\T1/pcr/m/n/9 myReg <- setClass("myReg", slots = c(title = "character"), con
tains = "mlm")[] 
[1243]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Com
plex}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7239 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7240 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7242 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7243 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1244]
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[]\T1/pcr/m/n/10 "abs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sign"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "sqrt"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ceiling"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "floor"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trunc"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cummax"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "acosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "asin"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "asinh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "atan"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "atanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "exp"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expm1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "c
os"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3209) in paragraph at lines 7317--7329
[]\T1/pcr/m/n/10 "cosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cospi"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "sin"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sinh"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "sinpi"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tan"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanp
i"[]\T1/ptm/m/n/10 ,
[1245] [1246]
Underfull \hbox (badness 1694) in paragraph at lines 7480--7482
[]\T1/ptm/m/n/10 name of the class or (more ef-fi-ciently) the class def-i-ni-t
ion ob-ject (see
Underfull \hbox (badness 10000) in paragraph at lines 7504--7507
[]\T1/ptm/m/n/10 The typ-i-cal user level func-tion is []\T1/pcr/m/n/10 selectS
uperClasses() []\T1/ptm/m/n/10 which calls
[1247]
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 []\T1/pcr/m/n/9 selectSuperClasses("C", dropVirtual=TRUE, directOnly=FALSE)# d
itto w/o "Root"[] 
[1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258]
[1259] [1260]
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 []\T1/pcr/m/n/10 setGroupGeneric(name, def= , group=list(), valueClass=charact
er(), 
[1261]
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 []      \T1/pcr/m/n/10 by = character(), where = topenv(parent.frame()), class
Def =,[] 
[1262] [1263] [1264] [1265]
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 []\T1/pcr/m/n/9 ## "trackMultiCurve", by making the y, smooth slots into 1-col
umn matrices[] 
[1266] [1267] [1268]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9175--9175
 []  \T1/pcr/m/n/9 setLoadAction(function(ns) assign("myCount", 0, envir = ns),
 "setCount")[] 
[1269] [1270] [1271]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 9437--9437
 []\T1/pcr/m/n/9 ## Using a short form for the signature, which matches like fo
rmal arguments[] 
[1272] [1273] [1274] [1275]
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 []\T1/pcr/m/n/9 ## Define a new generic function to compute the residual degre
es of freedom[] 
[1276]
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 9866--9866
 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
[1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286]
Underfull \hbox (badness 10000) in paragraph at lines 10564--10566
[]\T1/ptm/m/n/10 Object of the orig-i-nal class; e.g., []\T1/pcr/m/n/10 "functi
on" []\T1/ptm/m/n/10 for class
Underfull \hbox (badness 1852) in paragraph at lines 10572--10576
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
Underfull \hbox (badness 1681) in paragraph at lines 10572--10576
[]\T1/pcr/m/n/10 "functionWithTrace" []\T1/ptm/m/n/10 ex-tends []\T1/pcr/m/n/10
 "function"[]\T1/ptm/m/n/10 . Each of the spe-cific classes ex-tends
[1287] [1288] [1289]) (./parallel-pkg.tex [1290]
Chapter 8.
Underfull \hbox (badness 2418) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/p
cr/m/n/10 "L\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
[1291]
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[]\T1/ptm/m/n/10 a vec-tor for []\T1/pcr/m/n/10 clusterApply []\T1/ptm/m/n/10 a
nd []\T1/pcr/m/n/10 clusterApplyLB[]\T1/ptm/m/n/10 , a ma-trix for
[1292] [1293]
Underfull \hbox (badness 1024) in paragraph at lines 214--217
[]\T1/ptm/m/n/10 Two ex-cep-tions: []\T1/pcr/m/n/10 parLapply []\T1/ptm/m/n/10 
has ar-gu-ment []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 not []\T1/pcr/m/n/10 x []\T1
/ptm/m/n/10 for con-sis-tency with [][][]\T1/pcr/m/n/10 lapply[][][][]\T1/ptm/m
/n/10 , and
[1294]
Underfull \hbox (badness 1320) in paragraph at lines 301--304
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1295] [1296]
Underfull \hbox (badness 10000) in paragraph at lines 437--439
[]\T1/ptm/m/n/10 Character vec-tor of ad-di-tional ar-gu-ments for []\T1/pcr/m/
n/10 Rscript []\T1/ptm/m/n/10 such as
[1297] [1298] [1299] [1300] [1301]
Underfull \hbox (badness 1917) in paragraph at lines 771--780
[]\T1/pcr/m/n/10 mcfork []\T1/ptm/m/n/10 re-turns an ob-ject of the class []\T1
/pcr/m/n/10 "childProcess" []\T1/ptm/m/n/10 to the mas-ter and of class
Underfull \hbox (badness 1178) in paragraph at lines 771--780
[]\T1/pcr/m/n/10 "masterProcess" []\T1/ptm/m/n/10 to the child: both the classe
s in-herit from class []\T1/pcr/m/n/10 "process"[]\T1/ptm/m/n/10 . If
[1302]
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 []         \T1/pcr/m/n/10 mc.cleanup = TRUE, mc.allow.recursive = TRUE, affini
ty.list = NULL)[] 
[1303] [1304] [1305]
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 []\T1/pcr/m/n/9 mclapply(list(A, A, A), first, mc.preschedule = FALSE, affinit
y.list = affL)[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 1059--1059
 []\T1/pcr/m/n/9 # To optimize the overall execution time elements of X are sch
eduled to suitable CPUs[] 
[1306] [1307]
Underfull \hbox (badness 5388) in paragraph at lines 1174--1179
[]\T1/pcr/m/n/10 mcparallel []\T1/ptm/m/n/10 re-turns an ob-ject of the class [
]\T1/pcr/m/n/10 "parallelJob" []\T1/ptm/m/n/10 which in-her-its from
Underfull \hbox (badness 10000) in paragraph at lines 1198--1206
[]\T1/ptm/m/n/10 The be-haviour with []\T1/pcr/m/n/10 mc.set.seed = TRUE []\T1/
ptm/m/n/10 is dif-fer-ent only if
[1308]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1235--1235
 []\T1/pcr/m/n/9 mccollect(p, wait = FALSE, 10) # will retrieve the result (sin
ce it\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s fast)[] 
[1309]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1351--1351
 []                 \T1/pcr/m/n/9 as.integer(runif(N, 1, 12)), as.integer(runif
(N, 1, 28)))[] 
[1310]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1365--1365
 []\T1/pcr/m/n/9 system.time(c <- unlist(mclapply(dates, as.POSIXct,  format = 
"%Y-%m-%d")))[] 
Underfull \hbox (badness 1577) in paragraph at lines 1394--1397
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/pcr/m/n/10 
.Random.seed []\T1/ptm/m/n/10 when the
[1311]
Underfull \hbox (badness 3375) in paragraph at lines 1441--1443
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 nextRNGStream []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 nextRNGSubStream[]\T1/ptm/m/n/10 , a value which can be as-signed to
[1312] [1313]) (./splines-pkg.tex [1314]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/pcr/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 499--499
 []\T1/pcr/m/n/9 ispl <- polySpline(interpSpline( weight ~ height,  women, bSpl
ine = TRUE))[] 
[1323]
Underfull \hbox (badness 1043) in paragraph at lines 600--602
[]\T1/ptm/m/n/10 An in-te-ger be-tween 0 and []\T1/pcr/m/n/10 splineOrder(objec
t) - 1 []\T1/ptm/m/n/10 spec-i-fy-ing the
[1324] [1325]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 715--715
 []\T1/pcr/m/n/9 Matrix::drop0(zapsmall(6*splineDesign(knots = 1:40, x = 4:37, 
sparse = TRUE)))[] 
[1326] [1327] [1328]) (./stats-pkg.tex
Chapter 10.
[1329]
Underfull \hbox (badness 1077) in paragraph at lines 71--74
[]\T1/pcr/m/n/10 .MFclass() []\T1/ptm/m/n/10 re-turns a char-ac-ter string, one
 of []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ordered"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "factor"[]\T1/ptm/m/n/10 ,
Overfull \hbox (69.18036pt too wide) in paragraph at lines 91--91
 []\T1/pcr/m/n/9 (xl <- .getXlevels(terms(mf), mf)) # a list with one entry " $
 Species" with 3 levels:[] 
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 []  \T1/pcr/m/n/9 identical(.getXlevels(terms(mc), mc), xl[0]) # a empty named
 list, as no factors[] 
[1330] [1331] [1332] [1333] [1334]
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 []\T1/pcr/m/n/9 add1(glm.D93, scope = ~outcome*treatment, test = "Rao") ## Pea
rson Chi-square[] 
[1335]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 468--468
 []\T1/pcr/m/n/10 addmargins(A, margin = seq_along(dim(A)), FUN = sum, quiet = 
FALSE) 
[1336] [1337] [1338] [1339] [1340] [1341]
Underfull \hbox (badness 1024) in paragraph at lines 887--889
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/pcr/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
[1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1626--1626
 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1629--1629
 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
[1353] [1354]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1776--1776
 []                 \T1/pcr/m/n/9 approx(xn, yn, xout=xout, method=M, rule=R, n
a.rm=na.)$y),[] 
[1355]
Overfull \hbox (47.58038pt too wide) in paragraph at lines 1788--1788
 []\T1/pcr/m/n/9 (amy <- approx(x, y, xout = x)$y) # warning, can be avoided by
 specifying \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ties=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[
] 
[1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366]
[1367] [1368] [1369]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2806--2806
 []\T1/pcr/m/n/10 ARMAacf(ar = numeric(), ma = numeric(), lag.max = r, pacf = F
ALSE) 
[1370] [1371] [1372] [1373]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3054--3054
 []\T1/pcr/m/n/9 lines(ave(breaks, wool, tension, FUN = median), type = "s", co
l = "green")[] 
[1374] [1375] [1376]
Underfull \hbox (badness 10000) in paragraph at lines 3265--3267
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Bartlett test of homo
geneity of
[1377]
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 []\T1/pcr/m/n/10 pbeta(q, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
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 []\T1/pcr/m/n/10 qbeta(p, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
[1378] [1379] [1380] [1381]
Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3644.
[1382]
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 []\T1/pcr/m/n/9 plot (k, dbinom(k, n, pi/10, log = TRUE), type = "l", ylab = "
log density",[] 
[1383] [1384] [1385] [1386]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3989--3989
 []\T1/pcr/m/n/10 Box.test(x, lag = 1, type = c("Box-Pierce", "Ljung-Box"), fit
df = 0) 
[1387] [1388] [1389] [1390] [1391]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 4278--4278
 []\T1/pcr/m/n/10 pcauchy(q, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 4279--4279
 []\T1/pcr/m/n/10 qcauchy(p, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
[1392] [1393] [1394] [1395]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4520--4520
 []\T1/pcr/m/n/9 chisq.test(x, p = p)            #               maybe doubtful
, but is ok![] 
[1396] [1397]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 4695--4695
 []  \T1/pcr/m/n/9 plot(pp, sort(pchisq(rr <- rchisq(n, df = df, ncp = L), df =
 df, ncp = L)),[] 
[1398] [1399]
Underfull \hbox (badness 3989) in paragraph at lines 4789--4796
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1400] [1401] [1402] [1403] [1404]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5178--5178
 []\T1/pcr/m/n/9 constrOptim(c(-1.2,0.9), fr, grr, ui = rbind(c(-1,0), c(0,-1))
, ci = c(-1,-1))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5180--5180
 []\T1/pcr/m/n/9 constrOptim(c(.5,0), fr, grr, ui = rbind(c(-1,0), c(1,-1)), ci
 = c(-0.9,0.1))[] 
[1405] [1406] [1407] [1408]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 5402--5402
 []\T1/pcr/m/n/9 ## using sparse contrasts: % useful, once model.matrix() works
 with these :[] 
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 []\T1/pcr/m/n/10 convolve(x, y, conj = TRUE, type = c("circular", "open", "fil
ter")) 
[1409] [1410] [1411]
Underfull \hbox (badness 1436) in paragraph at lines 5630--5635
[]\T1/ptm/m/n/10 an op-tional char-ac-ter string giv-ing a method for com-put-i
ng co-vari-ances
Underfull \hbox (badness 1377) in paragraph at lines 5630--5635
\T1/ptm/m/n/10 in the pres-ence of miss-ing val-ues. This must be (an ab-bre-vi
-a-tion of)
Underfull \hbox (badness 1448) in paragraph at lines 5630--5635
\T1/ptm/m/n/10 one of the strings []\T1/pcr/m/n/10 "everything"[]\T1/ptm/m/n/10
 , []\T1/pcr/m/n/10 "all.obs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "complete.obs"
[]\T1/ptm/m/n/10 ,
[1412] [1413]
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 5833--5833
 []         \T1/pcr/m/n/10 exact = NULL, conf.level = 0.95, continuity = FALSE,
 ...)[] 
[1415] [1416]
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 []\T1/pcr/m/n/10 cov.wt(x, wt = rep(1/nrow(x), nrow(x)), cor = FALSE, center =
 TRUE, 
[1417] [1418] [1419]
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 []\T1/pcr/m/n/10 decompose(x, type = c("additive", "multiplicative"), filter =
 NULL) 
[1420] [1421]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 6293--6293
 []\T1/pcr/m/n/10 reformulate(termlabels, response = NULL, intercept = TRUE, en
v = parent.frame())[] 
[1422] [1423] [1424] [1425]
Underfull \hbox (badness 5954) in paragraph at lines 6556--6558
[]\T1/ptm/m/n/10 logical in-di-cat-ing if a box around the plot should be drawn
, see
[1426]
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[]\T1/ptm/m/n/10 Objects of class []\T1/pcr/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/pcr/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing 
method
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[]\T1/pcr/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
Underfull \hbox (badness 1655) in paragraph at lines 6645--6650
\T1/ptm/m/n/10 has []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y [
]\T1/ptm/m/n/10 (and op-tional fur-ther ar-gu-ments) as branches. Note that be-
fore \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.1.2,
[1427]
Underfull \hbox (badness 7238) in paragraph at lines 6681--6684
[][][]\T1/pcr/m/n/10 dendrapply[][][] []\T1/ptm/m/n/10 for ap-ply-ing a func-ti
on to \T1/ptm/m/it/10 each \T1/ptm/m/n/10 node. [][][]\T1/pcr/m/n/10 order.dend
rogram[][][] []\T1/ptm/m/n/10 and
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 []\T1/pcr/m/n/9 str(dend1, max.level = 2, last.str =  "\TS1/pcr/m/n/9 '\T1/pcr
/m/n/9 ") # only the first two sub-levels[] 
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 []\T1/pcr/m/n/9 plot(dend2$lower[[3]], nodePar = list(col = 4), horiz = TRUE, 
type = "tr")[] 
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 []\T1/pcr/m/n/9 ## merge() all parts back (using default \TS1/pcr/m/n/9 '\T1/p
cr/m/n/9 height\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 instead of original one):[] 
[1428]
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 []\T1/pcr/m/n/9 plot(d3, nodePar= nP, edgePar = list(col = "gray", lwd = 2), h
oriz = TRUE)[] 
[1429] [1430] [1431]
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 []                     \T1/pcr/m/n/9 function(k) density(kernel = k, give.Rker
n = TRUE))))[] 
[1433] [1434]
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[1436] [1437] [1438]
Underfull \hbox (badness 10000) in paragraph at lines 7414--7418
[]\T1/pcr/m/n/10 "maximum"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "manhattan"[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 "canberra"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "bi
nary" []\T1/ptm/m/n/10 or
[1439]
Underfull \hbox (badness 6493) in paragraph at lines 7517--7520
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/pcr/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
[1440] [1441]
Underfull \hbox (badness 10000) in paragraph at lines 7654--7657
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/pcr/m/n/10 ht
tps : / / CRAN . R-[]project . org / view =
[1442] [1443] [1444] [1445] [1446] [1447]
Underfull \hbox (badness 10000) in paragraph at lines 8066--8071
[]\T1/ptm/m/n/10 Each row of the re-sult-ing ma-trix con-sists of se-quences []
\T1/pcr/m/n/10 x[t][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 x[t-1][]\T1/ptm/m/n/10 ,
 ...,
[1448] [1449] [1450] [1451] [1452] [1453]
Underfull \hbox (badness 1210) in paragraph at lines 8421--8423
[]\T1/ptm/m/n/10 Components of []\T1/pcr/m/n/10 control []\T1/ptm/m/n/10 can al
so be sup-plied as named ar-gu-ments to
[1454] [1455] [1456] [1457] [1458] [1459]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 8887--8887
 []\T1/pcr/m/n/9 glm.qD93 <- glm(counts ~ outcome + treatment, d.AD, family = q
uasipoisson())[] 
[1460]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 8932--8932
 []\T1/pcr/m/n/9 ## Not run: glm(y ~ x, family = quasi(variance = "mu^3", link 
= "log")) # fails[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 8935--8935
 []\T1/pcr/m/n/9 glm(y ~ x, family = quasi(variance = "mu(1-mu)", link = "logit
"), start = c(0,1))[] 
[1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 9515--9515
 []           \T1/pcr/m/n/9 dimnames = list(income = c("< 15k", "15-25k", "25-4
0k", "> 40k"),[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 9516--9516
 []                     \T1/pcr/m/n/9 satisfaction = c("VeryD", "LittleD", "Mod
erateS", "VeryS")))[] 
[1469] [1470] [1471]
Underfull \hbox (badness 7291) in paragraph at lines 9695--9697
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Fligner-Killeen test 
of homogeneity of
[1472] [1473] [1474] [1475] [1476] [1477] [1478]
Underfull \hbox (badness 6944) in paragraph at lines 10187--10193
[][][]\T1/pcr/m/n/10 ftable.formula[][][] []\T1/ptm/m/n/10 for the for-mula in-
ter-face (which al-lows a []\T1/pcr/m/n/10 data = . []\T1/ptm/m/n/10 ar-gu-ment
);
[1479] [1480] [1481]
Underfull \hbox (badness 3758) in paragraph at lines 10401--10404
[]\T1/ptm/m/n/10 See also [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or
[1482] [1483] [1484] [1485]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 10645--10645
 []    \T1/pcr/m/n/10 x = FALSE, y = TRUE, singular.ok = TRUE, contrasts = NULL
, ...)[] 
Underfull \hbox (badness 4518) in paragraph at lines 10671--10676
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1486]
Underfull \hbox (badness 4132) in paragraph at lines 10710--10714
[]\T1/ptm/m/n/10 the method to be used in fit-ting the model. The de-fault meth
od
Underfull \hbox (badness 1112) in paragraph at lines 10764--10770
[]\T1/ptm/m/n/10 A spec-i-fi-ca-tion of the form []\T1/pcr/m/n/10 first:second 
[]\T1/ptm/m/n/10 in-di-cates the set of terms ob-tained by tak-
[1487]
Underfull \hbox (badness 10000) in paragraph at lines 10815--10818
[]\T1/ptm/m/n/10 The generic ac-ces-sor func-tions [][][]\T1/pcr/m/n/10 coeffic
ients[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 effects[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 fitted.values []\T1/ptm/m/n/10 and
[1488] [1489] [1490]
Underfull \hbox (badness 2142) in paragraph at lines 11032--11035
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1491]
Underfull \hbox (badness 1708) in paragraph at lines 11113--11117
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1492]
Underfull \hbox (badness 10000) in paragraph at lines 11155--11161
[][][]\T1/pcr/m/n/10 glm[][][] []\T1/ptm/m/n/10 for com-put-ing []\T1/pcr/m/n/1
0 glm.obj[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 anova.glm[][][][]\T1/ptm/m/n/1
0 ; the cor-re-spond-ing \T1/ptm/m/it/10 generic \T1/ptm/m/n/10 func-tions,
Underfull \hbox (badness 1418) in paragraph at lines 11193--11198
[]\T1/pcr/m/n/10 "average" []\T1/ptm/m/n/10 (= UP-GMA), []\T1/pcr/m/n/10 "mcqui
tty" []\T1/ptm/m/n/10 (= WPGMA), []\T1/pcr/m/n/10 "median" []\T1/ptm/m/n/10 (=
[1493] [1494]
Underfull \hbox (badness 2635) in paragraph at lines 11326--11329
\T1/ptm/m/n/10 There are [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/n/10 , [][
][]\T1/pcr/m/n/10 plot[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 identify []\
T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 identify.hclust[][][][]\T1/ptm/m/n/10 )
 meth-ods and the
[1495] [1496] [1497]
Underfull \hbox (badness 1694) in paragraph at lines 11509--11512
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1498]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11607--11607
 []\T1/pcr/m/n/9 heatmap(Ca, Rowv = FALSE, symm = TRUE, RowSideColors = cc, Col
SideColors = cc,[] 
[1499]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 11640--11640
 []            \T1/pcr/m/n/10 optim.start = c(alpha = 0.3, beta = 0.1, gamma = 
0.1),[] 
Underfull \hbox (badness 10000) in paragraph at lines 11653--11657
[]\T1/ptm/m/n/10 Character string to se-lect an []\T1/pcr/m/n/10 "additive" []\
T1/ptm/m/n/10 (the de-fault) or
[1500] [1501] [1502] [1503] [1504]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 11975--11975
 []\T1/pcr/m/n/9 identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4)
, DEV.FUN = nD)[] 
[1505]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11990 \aliasA{hat}{influence.measures}{hat}
                                             
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12050--12050
 []\T1/pcr/m/n/10 cooks.distance(model, infl = lm.influence(model, do.coef = FA
LSE),[] 
[1506]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12062--12062
 []\T1/pcr/m/n/10 hatvalues(model, infl = lm.influence(model, do.coef = FALSE),
 ...)[] 
Underfull \hbox (badness 1062) in paragraph at lines 12115--12120
[]\T1/ptm/m/n/10 The op-tional []\T1/pcr/m/n/10 infl[]\T1/ptm/m/n/10 , []\T1/pc
r/m/n/10 res []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sd []\T1/ptm/m/n/10 ar-gu-me
nts are there to en-cour-age the use of these di-
Underfull \hbox (badness 1052) in paragraph at lines 12132--12134
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists 
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1507] [1508] [1509] [1510]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12387--12387
 []                 \T1/pcr/m/n/10 type = c("l", "p", "b", "o", "c"), legend = 
TRUE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12388--12388
 []                 \T1/pcr/m/n/10 trace.label = deparse1(substitute(trace.fact
or)),[] 
[1511] [1512] [1513] [1514] [1515] [1516]
Underfull \hbox (badness 10000) in paragraph at lines 12734--12736
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/pcr/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 SSinit =
Underfull \hbox (badness 4739) in paragraph at lines 12757--12759
[]\T1/ptm/m/n/10 the es-ti-mate at time $\OML/cmm/m/it/10 t \OMS/cmsy/m/n/10 ^^
@ \OT1/cmr/m/n/10 1$ \T1/ptm/m/n/10 of the state un-cer-tainty ma-trix $\OML/cm
m/m/it/10 Q$ \T1/ptm/m/n/10 (not up-dated by
[1517] [1518] [1519] [1520] [1521]
Underfull \hbox (badness 3417) in paragraph at lines 13064--13066
[]\T1/ptm/m/n/10 an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of class []\T1/pcr/
m/n/10 "kmeans"[]\T1/ptm/m/n/10 , typ-i-cally the re-sult []\T1/pcr/m/n/10 ob [
]\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 ob <-
Underfull \hbox (badness 2894) in paragraph at lines 13070--13074
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
Underfull \hbox (badness 1038) in paragraph at lines 13070--13074
\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 "Hartigan-Wong"[]\T1/ptm/m/n/10 ): if pos-i-ti
ve (or true), trac-ing in-for-ma-tion on the
[1522] [1523] [1524] [1525] [1526] [1527]
Underfull \hbox (badness 1496) in paragraph at lines 13493--13499
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1528] [1529] [1530] [1531]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13742--13742
 []\T1/pcr/m/n/9 lag.plot(sqrt(sunspots), set.lags = c(1:4, 9:12), pch = ".", c
ol = "gold")[] 
[1532]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13843--13843
 []\T1/pcr/m/n/9 dimnames(cAS) <- list(paste("it =", format(1:10)), c("intercep
t", "slope"))[] 
[1533]
Underfull \hbox (badness 4518) in paragraph at lines 13891--13896
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1534] [1535] [1536]
Underfull \hbox (badness 10000) in paragraph at lines 14092--14096
[]\T1/ptm/m/n/10 More []\T1/pcr/m/n/10 lm() []\T1/ptm/m/n/10 ex-am-ples are ava
il-able e.g., in [][][]\T1/pcr/m/n/10 anscombe[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 attitude[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 freeny[][][]
[]\T1/ptm/m/n/10 ,
[1537] [1538] [1539] [1540] [1541]
Underfull \hbox (badness 1163) in paragraph at lines 14431--14439
\T1/ptm/m/n/10 els, [][][]\T1/pcr/m/n/10 influence[][][] []\T1/ptm/m/n/10 (etc 
on that page) for re-gres-sion di-ag-nos-tics, [][][]\T1/pcr/m/n/10 weighted.re
siduals[][][][]\T1/ptm/m/n/10 ,
[1542] [1543]
Underfull \hbox (badness 4518) in paragraph at lines 14551--14556
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1544] [1545]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 14739--14739
 []\T1/pcr/m/n/10 plogis(q, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 14740--14740
 []\T1/pcr/m/n/10 qlogis(p, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
[1546] [1547] [1548] [1549] [1550]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15083--15083
 []\T1/pcr/m/n/10 plnorm(q, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15084--15084
 []\T1/pcr/m/n/10 qlnorm(p, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
[1551] [1552]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 15177--15177
 []\T1/pcr/m/n/10 lowess(x, y = NULL, f = 2/3, iter = 3, delta = 0.01 * diff(ra
nge(x))) 
[1553] [1554] [1555] [1556] [1557] [1558]
Underfull \hbox (badness 2726) in paragraph at lines 15586--15589
[]\T1/ptm/m/n/10 character; one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cauchit"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "cloglog"[]\T1/ptm/m/n/10 ,
[1559]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 15680--15680
 []\T1/pcr/m/n/9 stopifnot(all.equal(pfm, pf2)) ## was off (rel.diff. 0.0766) i
n R <= 3.5.0[] 
[1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 16309--16309
 []\T1/pcr/m/n/9 a <- model.frame(cbind(ncases,ncontrols) ~ agegp + tobgp + alc
gp, data = esoph) 
[1570] [1571]
Underfull \hbox (badness 1490) in paragraph at lines 16456--16461
\T1/ptm/m/n/10 those spec-i-fied in []\T1/pcr/m/n/10 ... []\T1/ptm/m/n/10 which
 are re-cy-cled to the num-ber of data frame rows. Un-like
[1572]
Underfull \hbox (badness 1648) in paragraph at lines 16524--16526
[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
[1573]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 16609--16609
 []\T1/pcr/m/n/9 model.matrix(~ a + b, dd, contrasts.arg = list(a = "contr.sum"
, b = contr.poly))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 16610--16610
 []\T1/pcr/m/n/9 m.orth <- model.matrix(~a+b, dd, contrasts.arg = list(a = "con
tr.helmert"))[] 
[1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 17167--17167
 []\T1/pcr/m/n/9 stopifnot(all(na.omit(1:3) == 1:3))  # does not affect objects
 with no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] 
[1583] [1584] [1585]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17399--17399
 []\T1/pcr/m/n/9 persp(x, size, dnb <- outer(x, size, function(x,s) dnbinom(x, 
s, prob = 0.4)),[] 
[1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595]
Underfull \vbox (badness 10000) has occurred while \output is active [1596]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 18121--18121
 []\T1/pcr/m/n/9 ## adjusting the convergence test by adding \TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 scaleOffset\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 to its denominator RSS:[]
 
Underfull \vbox (badness 10000) has occurred while \output is active [1597]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 18139--18139
 []\T1/pcr/m/n/9 ## Here, requiring close convergence, must use more accurate n
umerical differentiation,[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 18140--18140
 []\T1/pcr/m/n/9 ## as this typically gives Error: "step factor .. reduced belo
w \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 minFactor\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 .."[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 18144--18144
 []\T1/pcr/m/n/9 ## central differencing works here typically (PR#18165: not co
nverging on *some*):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 18145--18145
 []\T1/pcr/m/n/9 ctr2 <- nls.control(nDcentral=TRUE, tol = 8e-8, # <- even smal
ler than above[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 18148--18148
 []        \T1/pcr/m/n/9 (grepl("^aarch64.*linux", R.version$platform) && grepl
("^NixOS", osVersion)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 18180--18180
 []              \T1/pcr/m/n/9 start = list(a = rep(b[2], 21), b = rep(b[3], 21
), th = b[1]))[] 
[1598] [1599] [1600]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 18356--18356
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData(expression(log(conc)), expression(densi
ty), DNase.2)[] 
[1601]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 18403--18403
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 18450--18450
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
[1602] [1603] [1604] [1605]
Overfull \hbox (102.78088pt too wide) in paragraph at lines 18663--18663
 []             \T1/pcr/m/n/10 eps = .Machine$double.eps ^ (1/if(central) 3 els
e 2), central = FALSE)[] 
[1606] [1607] [1608] [1609] [1610]
Underfull \hbox (badness 1248) in paragraph at lines 18978--18981
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 1661) in paragraph at lines 18991--18995
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 1478) in paragraph at lines 18999--19003
\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 control$trace []\T1/ptm/m/n/10 is pos-i-tive
. De-faults to ev-ery 10 it-er-a-tions for []\T1/pcr/m/n/10 "BFGS" []\T1/ptm/m/
n/10 and
[1611]
Underfull \hbox (badness 2042) in paragraph at lines 19057--19059
[]\T1/ptm/m/n/10 indicates an er-ror from the []\T1/pcr/m/n/10 "L-BFGS-B" []\T1
/ptm/m/n/10 method; see com-po-nent
[1612]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 19163--19163
 []      \T1/pcr/m/n/9 lower = rep(2, 25), upper = rep(4, 25)) # par[24] is *no
t* at boundary[] 
[1613]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19206--19206
 []     \T1/pcr/m/n/9 main = "initial solution of traveling salesman problem", 
axes = FALSE)[] 
Overfull \hbox (123.1803pt too wide) in paragraph at lines 19224--19224
 []\T1/pcr/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 
Overfull \hbox (96.18033pt too wide) in paragraph at lines 19227--19227
 []\T1/pcr/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 19247--19247
 []\T1/pcr/m/n/10 optimize(f, interval, ..., lower = min(interval), upper = max
(interval), 
[1614]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 19250--19250
 []\T1/pcr/m/n/10 optimise(f, interval, ..., lower = min(interval), upper = max
(interval),[] 
Underfull \hbox (badness 2564) in paragraph at lines 19285--19296
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 f []\T1/ptm/m/n/10 is never eva
l-u-ated at two points closer to-gether than $\OML/cmm/m/it/10 ^^O$$\OMS/cmsy/m
/n/10 j\OML/cmm/m/it/10 x[]\OMS/cmsy/m/n/10 j \OT1/cmr/m/n/10 + (\OML/cmm/m/it/
10 tol=\OT1/cmr/m/n/10 3)$\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1082) in paragraph at lines 19285--19296
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 ^^O$ \T1/ptm/m/n/10 is ap-prox-i-mately 
[]\T1/pcr/m/n/10 sqrt([][].Machine[][][]$double.eps) []\T1/ptm/m/n/10 and $\OML
/cmm/m/it/10 x[]$ \T1/ptm/m/n/10 is the fi-nal ab-scissa
[1615]
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 []\T1/pcr/m/n/9 f  <- function(x) ifelse(x > -1, ifelse(x < 4, exp(-1/abs(x - 
1)), 10), 10)[] 
[1616] [1617] [1618]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19575--19575
 []\T1/pcr/m/n/9 matplot(p, p.adj, ylab="p.adjust(p, meth)", type = "l", asp = 
1, lty = 1:6,[] 
[1619] [1620]
Underfull \hbox (badness 1337) in paragraph at lines 19686--19689
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1621] [1622] [1623] [1624] [1625]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20005--20005
 []      \T1/pcr/m/n/10 par.fit = list(col = "red", cex = 1.5, pch = 13, lwd = 
1.5),[] 
[1626] [1627]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 20093--20093
 []       \T1/pcr/m/n/10 expression("Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s dist
 vs Leverage* " * h[ii] / (1 - h[ii]))),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 20095--20095
 []              \T1/pcr/m/n/10 panel.smooth(x, y, iter=iter.smooth, ...) else 
points,[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 20097--20097
 []     \T1/pcr/m/n/10 ask = prod(par("mfcol")) < length(which) && dev.interact
ive(),[] 
[1628]
Underfull \hbox (badness 10000) in paragraph at lines 20157--20163
\T1/pcr/m/n/10 "bottomleft", legend = "Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s di
stance", lty = cook.lty,
Underfull \hbox (badness 10000) in paragraph at lines 20157--20163
\T1/pcr/m/n/10 col = cook.col, text.col = cook.col, bty = "n", x.intersp
Underfull \hbox (badness 10000) in paragraph at lines 20165--20171
[]\T1/ptm/m/n/10 the num-ber of ro-bust-ness it-er-a-tions, the ar-gu-ment []\T
1/pcr/m/n/10 iter []\T1/ptm/m/n/10 in
Underfull \hbox (badness 10000) in paragraph at lines 20176--20179
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 1 or 2, to be used in []\T1/pcr/m
/n/10 ylim <-
[1629] [1630] [1631] [1632] [1633]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20485--20485
 []                    \T1/pcr/m/n/10 main = NULL, ci.col = "blue", ci.lty = 3,
 ...)[] 
Underfull \hbox (badness 1194) in paragraph at lines 20495--20498
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1634]
Underfull \hbox (badness 1107) in paragraph at lines 20553--20555
[]\T1/ptm/m/n/10 numeric vec-tor of ab-scissa val-ues at which to eval-u-ate []
\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . De-faults to
[1635]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20608--20608
 []\T1/pcr/m/n/9 plot(sfun.2);plot(sfun.2, xval = tt, add = TRUE, col = "orange
") # all colors[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 20615--20615
 []\T1/pcr/m/n/9 legend(2.5, 1.9, paste("f =", c(0, 0.2, 1)), col = 1:3, lty = 
1, y.intersp = 1)[] 
[1636] [1637]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20709--20709
 []\T1/pcr/m/n/9 title("plot(ts(..), axes=FALSE, ann=FALSE, frame.plot=TRUE, ma
r..., oma...)")[] 
[1638] [1639]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 20838--20838
 []    \T1/pcr/m/n/9 ppois(10*(15:25), lambda = 100, lower.tail = FALSE)  # no 
cancellation[] 
[1640]
Underfull \hbox (badness 7740) in paragraph at lines 20901--20903
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 "Comparison of
Overfull \hbox (6.78088pt too wide) in paragraph at lines 20949--20949
 []\T1/pcr/m/n/10 poly(x, ..., degree = 1, coefs = NULL, raw = FALSE, simple = 
FALSE) 
[1641]
Underfull \hbox (badness 10000) in paragraph at lines 21005--21007
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 poly(*, simple=TRUE)[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 polym(*, coefs=<non-NULL>)[]\T1/ptm/m/n/10 , and
[1642]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 21042--21042
 [] \T1/pcr/m/n/9 zm <- zapsmall(polym (    1:4, c(1, 4:6),  degree = 3)) # or 
just poly():[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 21047--21047
 []\T1/pcr/m/n/9 ## poly(<matrix>, df) --- used to fail till July 14 (vive la F
rance!), 2017:[] 
[1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653]
[1654] [1655]
Overfull \hbox (58.38037pt too wide) in paragraph at lines 21902--21902
 []          \T1/pcr/m/n/9 all.equal(pz3$sdev, pZ$sdev, tolerance = 1e-15)) # e
xactly equal typically[] 
[1656]
Underfull \hbox (badness 6859) in paragraph at lines 21969--21976
[][][]\T1/pcr/m/n/10 predict.glm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
redict.lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.loess[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.nls[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 predict.poly[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 21980--21986
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/pcr/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1657] [1658] [1659] [1660] [1661]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 22268--22268
 []        \T1/pcr/m/n/10 rankdeficient = c("warnif", "simple", "non-estim", "N
A", "NAwarn"),[] 
Underfull \hbox (badness 10000) in paragraph at lines 22294--22297
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string
 spec-i-fy-ing what should hap-pen in the
Underfull \hbox (badness 10000) in paragraph at lines 22294--22297
\T1/ptm/m/n/10 case of a rank de-fi-cient model, i.e., when []\T1/pcr/m/n/10 ob
ject$rank <
[1662]
Underfull \hbox (badness 5832) in paragraph at lines 22299--22304
\T1/ptm/m/n/10 cases, i.e., vec-tors not in the same pre-dic-tor sub-space as t
he
Underfull \hbox (badness 8151) in paragraph at lines 22299--22304
\T1/ptm/m/n/10 orig-i-nal data (with tol-er-ance []\T1/pcr/m/n/10 tol[]\T1/ptm/
m/n/10 ). In that case, the non-
Underfull \hbox (badness 1184) in paragraph at lines 22299--22304
\T1/ptm/m/n/10 estimable in-dices are also re-turned as at-tribute []\T1/pcr/m/
n/10 "non-estim" []\T1/ptm/m/n/10 (see
[1663] [1664] [1665] [1666] [1667] [1668] [1669]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 22767--22767
 []         \T1/pcr/m/n/10 subset = rep_len(TRUE, nrow(as.matrix(x))), fix_sign
 = TRUE, ...)[] 
[1670] [1671] [1672] [1673]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 23051--23051
 []             \T1/pcr/m/n/10 has.Pvalue = nc >= 4L && length(cn <- colnames(x
)) &&[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 23052--23052
 []                          \T1/pcr/m/n/10 substr(cn[nc], 1L, 3L) %in% c("Pr("
, "p-v"),[] 
[1674] [1675] [1676] [1677] [1678]
Underfull \hbox (badness 1337) in paragraph at lines 23378--23384
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1679] [1680] [1681] [1682] [1683]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 23690--23690
 []\T1/pcr/m/n/9 with(d, qqplot(Female, Male, pch = 19, xlim = c(-31, 31), ylim
 = c(-31, 31),[] 
[1684] [1685] [1686] [1687]
Underfull \hbox (badness 10000) in paragraph at lines 24002--24004
[]\T1/ptm/m/n/10 Wicklin, R. (2017) Sam-ple quan-tiles: A com-par-i-son of 9 de
f-i-ni-tions;
Underfull \hbox (badness 10000) in paragraph at lines 24002--24004
\T1/ptm/m/n/10 SAS Blog. [][]$\T1/pcr/m/n/10 https : / / blogs . sas . com / co
ntent / iml / 2017 / 05 / 24 /
[1688]
Underfull \hbox (badness 10000) in paragraph at lines 24009--24010
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _
[1689]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 24120--24120
 []       \T1/pcr/m/n/10 method = c("non.compact", "row.compact", "col.compact"
, "compact"),[] 
[1690]
Underfull \hbox (badness 1028) in paragraph at lines 24178--24181
[]\T1/ptm/m/n/10 further ar-gu-ments to be passed to or from meth-ods; for []\T
1/pcr/m/n/10 write() []\T1/ptm/m/n/10 and
[1691] [1692]
Underfull \hbox (badness 10000) in paragraph at lines 24293--24296
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1693]
Underfull \hbox (badness 7099) in paragraph at lines 24348--24350
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 reorder[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
[1694]
Underfull \hbox (badness 7099) in paragraph at lines 24412--24414
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 relevel[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
Overfull \hbox (31.3804pt too wide) in paragraph at lines 24447--24447
 []\T1/pcr/m/n/9 bymedianR <- with(InsectSprays, reorder(spray, count, median, 
decreasing=TRUE))[] 
[1695] [1696]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 24523--24523
 []\T1/pcr/m/n/9 plot(reorder(dd, 10:1, agglo.FUN = mean), main = "reorder(dd, 
10:1, mean)")[] 
[1697] [1698]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 24640--24640
 []\T1/pcr/m/n/10 #         varying = ___,  # list / matrix / vector (use with 
care)[] 
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 []\T1/pcr/m/n/10 #         v.names = ___,  # vector of variable names in long 
format[] 
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 []\T1/pcr/m/n/10 #         timevar, times, # name / values of constructed time
 variable[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 24643--24643
 []\T1/pcr/m/n/10 #         idvar, ids)     # name / values of constructed id v
ariable[] 
[1699] [1700]
Underfull \hbox (badness 10000) in paragraph at lines 24803--24808
[][][]\T1/pcr/m/n/10 stack[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 aperm[]
[][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 relist[][][] []\T1/ptm/m/n/10 for r
e-shap-ing the re-sult of [][][]\T1/pcr/m/n/10 unlist[][][][]\T1/ptm/m/n/10 . [
][][]\T1/pcr/m/n/10 xtabs[][][] []\T1/ptm/m/n/10 and
Underfull \hbox (badness 2495) in paragraph at lines 24803--24808
[][][]\T1/pcr/m/n/10 as.data.frame.table[][][] []\T1/ptm/m/n/10 for cre-at-ing 
con-tin-gency ta-bles and con-vert-ing them back to
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 []\T1/pcr/m/n/9 ## long to wide (direction = "wide") requires idvar and timeva
r at a minimum[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 24815--24815
 []\T1/pcr/m/n/9 reshape(Indometh, direction = "wide", idvar = "Subject", timev
ar = "time")[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 24834--24834
 []\T1/pcr/m/n/9 reshape(df, timevar = "visit", idvar = "id", direction = "wide
", v.names = "x")[] 
[1701] [1702]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 24938--24938
 []       \T1/pcr/m/n/10 na.action = c("+Big_alternate", "-Big_alternate", "na.
omit", "fail"),[] 
Underfull \hbox (badness 1033) in paragraph at lines 24981--24987
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1703]
Underfull \hbox (badness 10000) in paragraph at lines 25002--25005
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/pcr/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/pcr/m/n/10 y[j] =
[1704]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 25084--25084
 []\T1/pcr/m/n/9 plot(myNHT, type = "b", ylim = c(48, 60), main = "Running Medi
ans Example")[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 25113--25113
 []\T1/pcr/m/n/9 ## An example with initial NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s -
 used to fail badly (notably for "Turlach"):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 25125--25125
 []\T1/pcr/m/n/9 matplot(y = cbind(x15, rT15), type = "b", ylim = c(1,9), pch=1
:5, xlab = NA,[] 
[1705] [1706] [1707] [1708] [1709] [1710]
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[1712]
Underfull \hbox (badness 6268) in paragraph at lines 25584--25589
[][][]\T1/pcr/m/n/10 SSasympOrig[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 S
Sbiexp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfol[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 SSfpl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSgo
mpertz[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSlogis[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 SSmicmen[][][][]\T1/ptm/m/n/10 ,
[1713] [1714] [1715]
Underfull \hbox (badness 1867) in paragraph at lines 25794--25796
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 25810--25814
[]\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 PP
Underfull \hbox (badness 10000) in paragraph at lines 25810--25814
\T1/pcr/m/n/10 <- sum(!is.na([][]coef[][][](object))) []\T1/ptm/m/n/10 -- where
 in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was
[1716]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 25852--25852
 []\T1/pcr/m/n/9 sigma(lm1) # ~= 7.165  = "Residual standard error"  printed fr
om summary(lm1)[] 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(sigma(fm.DN1), summary(fm.DN1)$sigma, tole
rance=1e-15))[] 
[1717] [1718] [1719]
Underfull \hbox (badness 2495) in paragraph at lines 26042--26051
[]\T1/ptm/m/n/10 For an in-verse gaus-sian GLM the model as-sumed is $\OML/cmm/
m/it/10 IG\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 ^^V[]; ^^Uw[]\OT1/cmr/m/n/10 )$ \T1
/ptm/m/n/10 (see [][]$\T1/pcr/m/n/10 https : / / en .
[1720] [1721]
Underfull \hbox (badness 2197) in paragraph at lines 26184--26187
[]\T1/pcr/m/n/10 psmirnov []\T1/ptm/m/n/10 gives the dis-tri-bu-tion func-tion,
 []\T1/pcr/m/n/10 qsmirnov []\T1/ptm/m/n/10 gives the quan-tile func-tion, and
Overfull \hbox (24.78088pt too wide) in paragraph at lines 26204--26204
 []       \T1/pcr/m/n/10 twiceit = FALSE, endrule = c("Tukey", "copy"), do.ends
 = FALSE)[] 
Underfull \hbox (badness 1412) in paragraph at lines 26211--26213
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing the kind of smoother re-qui
red; de-faults to
[1722]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 26298--26298
 []\T1/pcr/m/n/9 matlines(cbind(smooth(x, "3R"), smooth(x, "S"), smooth(x, "3RS
S"), smooth(x)))[] 
[1723]
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 []\T1/pcr/m/n/10 smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, lambda 
= NULL, cv = FALSE, 
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 []              \T1/pcr/m/n/10 control.spar = list(), tol = 1e-6 * IQR(x), kee
p.stuff = FALSE)[] 
[1724] [1725] [1726]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 26561--26561
 []    \T1/pcr/m/n/10 nx <- length(x) - sum(duplicated( round((x - mean(x)) / t
ol) ))[] 
Underfull \hbox (badness 2547) in paragraph at lines 26565--26571
[]\T1/ptm/m/n/10 The de-fault []\T1/pcr/m/n/10 all.knots = FALSE []\T1/ptm/m/n/
10 and []\T1/pcr/m/n/10 nknots = .nknots.smspl[]\T1/ptm/m/n/10 , en-tails us-in
g only
[1727]
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 []\T1/pcr/m/n/9 plot(dist ~ speed, data = cars, main = "data(cars)  &  smoothi
ng splines")[] 
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 []\T1/pcr/m/n/9 with(cars.spl$fit, min + range * knot[-c(1:3, nk+1 +1:3)]) # =
= unique(cars$speed)[] 
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[1729] [1730]
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 []\T1/pcr/m/n/10 spec.ar(x, n.freq, order = NULL, plot = TRUE, na.action = na.
fail, 
[1731] [1732] [1733] [1734] [1735] [1736]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 27205--27205
 []          \T1/pcr/m/n/10 method = c("fmm", "periodic", "natural", "monoH.FC"
, "hyman"),[] 
[1737] [1738]
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 []\T1/pcr/m/n/9 set.seed(8); x <- sort(round(rnorm(30), 1)); y <- round(sin(pi
 * x) + rnorm(30)/10, 3)[] 
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 []\T1/pcr/m/n/9 plot(x, y, main = "spline(x,y, ties=list(\"ordered\", mean))  
for when x has ties")[] 
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 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "monoH.FC")(x), add = TRUE, c
ol = 3, n = 1001)[] 
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 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "hyman")   (x), add = TRUE, c
ol = 4, n = 1001)[] 
[1740]
Underfull \hbox (badness 2922) in paragraph at lines 27471--27476
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5.2), xlim
 = c(-.3, 5),[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 27511--27511
 []                    \T1/pcr/m/n/9 {f[phi](x) == phi[1] + (phi[2]-phi[1])*~e^
{-e^{phi[3]}*~x}}))[] 
[1741]
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 []         \T1/pcr/m/n/9 c(0  ,  1   ), 1, length = 0.08, angle = 25); text(0.
5, 1, quote(1))[] 
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 []  \T1/pcr/m/n/9 y0 <- 1 + 4*exp(-3/4) ; t.5 <- log(2) / exp(-3/4) ; AR2 <- 3
 # (Asym + R0)/2[] 
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 []  \T1/pcr/m/n/9 axis(2, at = c(1,AR2,5), labels= expression(phi[2], frac(phi
[1]+phi[2],2), phi[1]),[] 
Underfull \hbox (badness 3240) in paragraph at lines 27579--27582
[][][]\T1/pcr/m/n/10 nls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 selfStart
[][][][]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 example(SSasympOff) []\T1/ptm/m/n/10 
gives graph show-ing the []\T1/pcr/m/n/10 SSasympOff
[1742]
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 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOff(xx, Asym = 5, lrc = log(
0.4), c0 = 3/4)) )[] 
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 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(-.5,6), xlim
 = c(-1, 8),[] 
[1743]
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 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOrig(xx, Asym = 5, lrc = log
(log(2)))) )[] 
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 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5), xlim =
 c(-1/4, 5),[] 
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 []  \T1/pcr/m/n/9 axis(2, at = 5*c(1/2,1), labels= expression(frac(phi[1],2), 
phi[1]), pos=0, las=1)[] 
[1744]
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 []       \T1/pcr/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
Underfull \hbox (badness 2922) in paragraph at lines 27741--27747
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27763--27763
 []\T1/pcr/m/n/9 print(getInitial(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), dat
a = Indo.1),[] 
[1745]
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 []  \T1/pcr/m/n/9 legend("topright", c("y1+y2", "y1 = 3.5 * exp(-4*x)", "y2 = 
1.5 * exp(-x)"),[] 
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 []\T1/pcr/m/n/9 ## Fails by default (scaleOffset=0) on most platforms {also af
ter increasing maxiter !}[] 
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 []        \T1/pcr/m/n/9 nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, trace=TRUE)[] 
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 []\T1/pcr/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[] 
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 []           \T1/pcr/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[] 
[1746] [1747]
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 []\T1/pcr/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input) - exp(-exp(lK
a)*input)) 
[1748]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1749]
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 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "A", phi[2] == "B", phi[3] == "xm
id", phi[4] == "scal")))[] 
Underfull \hbox (badness 2922) in paragraph at lines 28061--28066
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1750]
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 []\T1/pcr/m/n/9 lines(x, do.call(SSgompertz, c(list(x=x), coef(fm1))), col = "
red", lwd=2)[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1751]
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 []\T1/pcr/m/n/9 ## Initial values are in fact the converged one here, "Number 
of iter...: 0" :[] 
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 []\T1/pcr/m/n/9 fm2 <- update(fm1, control=nls.control(tol = 1e-9, warnOnly=TR
UE), trace = TRUE)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28175--28175
 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "Asym", phi[2] == "xmid", phi[3] 
== "scal")))[] 
[1752]
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 []  \T1/pcr/m/n/9 segments(c(2,2.6,2.6), c(0,  2.5,3.5),   # NB.  SSlogis(x = 
xmid = 2) = 2.5[] 
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []\T1/pcr/m/n/9 print(getInitial(rate ~ SSmicmen(conc, Vm, K), data = PurTrt),
 digits = 3)[] 
[1753]
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 []       \T1/pcr/m/n/9 ann = FALSE, axes = FALSE, main = "Parameters in the SS
micmen model")[] 
[1754]
Underfull \hbox (badness 6493) in paragraph at lines 28312--28317
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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 []\T1/pcr/m/n/9 getInitial(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
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 []\T1/pcr/m/n/9 fm1 <- nls(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 28346--28346
 []\T1/pcr/m/n/9 plot(weight ~ Time, Chick.6, xlim = c(0, 21), main = "SSweibul
l() fit to Chick.6")[] 
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 []\T1/pcr/m/n/9 As <- coef(fm1)[["Asym"]]; abline(v = 0, h = c(As, As - coef(f
m1)[["Drop"]]), lty = 3)[] 
[1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765]
[1766] [1767] [1768]
Underfull \hbox (badness 3396) in paragraph at lines 29233--29235
[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.glm"[]\T1/ptm/m/
n/10 , usu-ally, a re-sult of a call to
[1769] [1770] [1771]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1772] [1773]
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[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.nls"[]\T1/ptm/m/
n/10 , usu-ally the re-sult of a call to
[1774]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1775]
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 []\T1/pcr/m/n/10 supsmu(x, y, wt =, span = "cv", periodic = FALSE, bass = 0, t
race = FALSE) 
[1776] [1777]
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[]\T1/ptm/m/n/10 character vec-tor, one shorter than (the \T1/ptm/m/it/10 aug-m
ented\T1/ptm/m/n/10 , see []\T1/pcr/m/n/10 corr []\T1/ptm/m/n/10 be-low)
[1778]
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 []\T1/pcr/m/n/9 symnum(ii, cutpoints =  2*(0:4), symbols = c(".", "-", "+", "$
"), show.max = TRUE)[] 
[1779]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1780] [1781] [1782] [1783]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 30202--30202
 []\T1/pcr/m/n/9 persp(tt, ncp, ptn, zlim = 0:1, r = 2, phi = 20, theta = 200, 
main = t.tit,[] 
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 []         \T1/pcr/m/n/10 use.factor.levels = TRUE, smooth = NULL, ylim = "com
mon",[] 
[1784]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1785]
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 []\T1/pcr/m/n/9 termplot(model, partial.resid = TRUE, smooth = panel.smooth, s
pan.smth = 1/4)[] 
[1786]
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 []\T1/pcr/m/n/10 terms(x, specials = NULL, abb = NULL, data = NULL, neg.out = 
TRUE,[] 
[1787] [1788]
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[]\T1/ptm/m/n/10 If a []\T1/pcr/m/n/10 specials []\T1/ptm/m/n/10 ar-gu-ment was
 given to [][][]\T1/pcr/m/n/10 terms.formula[][][] []\T1/ptm/m/n/10 there is a
[1789] [1790]
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 []\T1/pcr/m/n/10 toeplitz2(x, nrow = length(x) +1 - ncol, ncol = length(x) +1 
- nrow)[] 
Underfull \hbox (badness 2913) in paragraph at lines 30655--30659
[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 toeplitz(x, *)[]\T1/ptm/m/n/10 : the firs
t col-umn of the Toeplitz ma-trix; for
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 []\T1/pcr/m/n/9 # Matrix of character (could also have logical, raw, complex .
.) {also warning}:[] 
[1791]
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 []   \T1/pcr/m/n/9 colnames(W) <- paste0(",", if(n <= 9) 1:n else c(1:9, lette
rs[seq_len(n-9)]))[] 
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 []\T1/pcr/m/n/9 y.hat <- W. %*% y # y.hat := smoothed(y) ("mass preserving" ->
 longer than y)[] 
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 []\T1/pcr/m/n/9 plot(x,y, type="b", xlim=c(1,m)); curve(f(x), 1,n, col="gray",
 lty=2, add=TRUE)[] 
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 []   \T1/pcr/m/n/10 class = if(nseries > 1) c("mts", "ts", "matrix", "array") 
else "ts",[] 
[1792] [1793]
Underfull \hbox (badness 1655) in paragraph at lines 30826--30829
[]\T1/pcr/m/n/10 is.mts(x) []\T1/ptm/m/n/10 tests if an ob-ject []\T1/pcr/m/n/1
0 x []\T1/ptm/m/n/10 is a mul-ti-vari-ate time se-ries, i.e., ful-fills []\T1/p
cr/m/n/10 is.ts(x)[]\T1/ptm/m/n/10 ,
[1794] [1795] [1796] [1797] [1798]
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 []\T1/pcr/m/n/10 ptukey(q, nmeans, df, nranges = 1, lower.tail = TRUE, log.p =
 FALSE) 
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 []\T1/pcr/m/n/10 qtukey(p, nmeans, df, nranges = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
[1799] [1800] [1801] [1802] [1803]
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 []        \T1/pcr/m/n/10 extendInt = c("no", "yes", "downX", "upX"), check.con
v = FALSE,[] 
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 []        \T1/pcr/m/n/10 tol = .Machine$double.eps^0.25, maxiter = 1000, trace
 = 0)[] 
[1804] [1805]
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 []\T1/pcr/m/n/9 ##--- uniroot() with new interval extension + checking feature
s: --------------[] 
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 []\T1/pcr/m/n/9 ## where as  \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 extendInt="yes"\TS1
/pcr/m/n/9 '  \T1/pcr/m/n/9 simply first enlarges the search interval:[] 
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[1807] [1808]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 1337) in paragraph at lines 32376--32380
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1817] [1818] [1819]
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 []\T1/pcr/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
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 []\T1/pcr/m/n/9 wilcox.test((4:2)/10, (3:1)/10, paired=TRUE, digits.rank = 9) 
# same ties as (4:2, 3:1)[] 
[1820] [1821] [1822]
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 []      \T1/pcr/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
 = getOption("ts.eps"), ...)[] 
[1823]
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 []\T1/pcr/m/n/10 xtabs(formula = ~., data = parent.frame(), subset, sparse = F
ALSE, 
[1824] [1825]
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 []\T1/pcr/m/n/9 ## The Female:Rejected combination has NA \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 Freq\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 (and NA prints \TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 invisibly\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 as "")[] 
[1826]) (./stats4-pkg.tex
Chapter 11.
[1827] [1828] [1829]
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 []    \T1/pcr/m/n/9 -sum(stats::dpois(y, lambda = exp(lymax)/(1+x/exp(lxhalf))
, log = TRUE))[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1830]
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 []\T1/pcr/m/n/9 ## Boundary case: This works, but fails if limits are set clos
er to 0 and 1[] 
[1831] [1832] [1833] [1834]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1835] [1836] [1837])
(./tcltk-pkg.tex [1838]
Chapter 12.
[1839] [1840] [1841] [1842] [1843]
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 []\T1/pcr/m/n/9 ls(envir = .TkRoot$env, all.names = TRUE) # .Tcl.args put a ca
llback ref in here[] 
[1844] [1845]
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[]\T1/pcr/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
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[1848] [1849] [1850] [1851]
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 []\T1/pcr/m/n/9 eval.txt <- function() eval(str2lang(tclvalue(tkget(txt.w, "0.
0", "end"))))[] 
[1853] [1854] [1855] [1856] [1857]
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[][][]\T1/pcr/m/n/10 select.list[][][] []\T1/ptm/m/n/10 (a text ver-sion ex-cep
t on Win-dows and the ma-cOS GUI), [][][]\T1/pcr/m/n/10 menu[][][] []\T1/ptm/m/
n/10 (whose
[1858]) (./tools-pkg.tex
Chapter 13.
[1859]
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 []\T1/pcr/m/n/9 ## is used for simple print methods in R, and as prototype for
 new methods.[] 
[1860]
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[]\T1/pcr/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
 be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1861]
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 []\T1/pcr/m/n/9 assertCondition(ff(), "error", "warning") # ok (quietly, catch
ing warning)[] 
[1862]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12
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\T1/ptm/m/n/10 types of bib-li-o-graphic en-try sup-ported by [][][]\T1/pcr/m/n
/10 bibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-
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\T1/ptm/m/n/10 tines de-scribed be-low. The for-mer must be named []\T1/pcr/m/n
/10 formatArticle[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 formatBook[]\T1/ptm/m/n/10
 ,
[1863]
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 []\T1/pcr/m/n/10 buildVignette(file, dir = ".", weave = TRUE, latex = TRUE, ta
ngle = TRUE, 
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1864] [1865]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[1866] [1867] [1868] [1869] [1870] [1871] [1872]
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 []\T1/pcr/m/n/10 resaveRdaFiles(paths, compress = c("auto", "gzip", "bzip2", "
xz"),[] 
[1873]
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 []\T1/pcr/m/n/9 bad <- is.na(res$ASCII) | res$ASCII | (res$size > 1e4 & res$co
mpress == "none")[] 
[1874] [1875]
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 []                              \T1/pcr/m/n/10 outputs = FALSE, sources = FALS
E, ...)[] 
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 []\T1/pcr/m/n/10 check_packages_in_dir_details(dir, logs = NULL, drop_ok = TRU
E, ...)[] 
[1876]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
[1877]
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-
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\T1/ptm/m/n/10 ing []\T1/pcr/m/n/10 summarize_check_packages_in_dir_results []\
T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 check_packages_in_dir []\T1/ptm/m/n/10 re-turns an ob-ject in-
her-it-ing from class
[1878] [1879]
Underfull \hbox (badness 10000) in paragraph at lines 1386--1389
[]\T1/pcr/m/n/10 codocClasses []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 codocData [
]\T1/ptm/m/n/10 re-turn ob-jects of class []\T1/pcr/m/n/10 "codocClasses" []\T1
/ptm/m/n/10 and
[1880] [1881]
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[]\T1/pcr/m/n/10 CRAN_package_db() []\T1/ptm/m/n/10 re-turns a data frame with 
char-ac-ter columns con-tain-ing most
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' meta-data for the cu
r-rent pack-ages in the CRAN pack-age repos-i-
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\T1/ptm/m/n/10 tory, in-clud-ing in par-tic-u-lar the De-scrip-tion and Main-ta
iner in-for-ma-tion not pro-vided by
[1882]
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/pcr/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1883] [1884]
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 []              \T1/pcr/m/n/10 utils::installed.packages(lib.loc, fields = "En
hances"))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests",
Underfull \hbox (badness 1558) in paragraph at lines 1726--1734
\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor,
[1885] [1886] [1887]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.GSC}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1938 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       pdfTeX warning (ext4): destination with 
the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1939 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1888] [1889] [1890]
[1891]
Underfull \hbox (badness 1142) in paragraph at lines 2208--2214
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 loadPkgRdMacros []\T1/ptm/m/n/10 func-tio
n first looks for an []\T1/pcr/m/n/10 "RdMacros" []\T1/ptm/m/n/10 en-try in the
 pack-age
[1892]
Underfull \hbox (badness 2359) in paragraph at lines 2272--2279
[]\T1/ptm/m/n/10 Package main-tain-ers can use these func-tions to em-ploy user
 and site spe-cific com-pi-la-
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\T1/ptm/m/n/10 tion set-tings also for com-pi-la-tions not us-ing \T1/phv/m/n/1
0 R\T1/ptm/m/n/10 's mech-a-nisms (in par-tic-u-lar, cus-tom com-
Underfull \hbox (badness 4168) in paragraph at lines 2272--2279
\T1/ptm/m/n/10 pi-la-tions in sub-di-rec-to-ries of `\T1/pcr/m/n/10 src\T1/ptm/
m/n/10 '), e.g., by adding con-fig-ure code call-ing \T1/phv/m/n/10 R \T1/ptm/m
/n/10 with
[1893]
Underfull \hbox (badness 1342) in paragraph at lines 2324--2330
\T1/ptm/m/n/10 This al-lows e.g. the trans-la-tions shipped in \T1/phv/m/n/10 R
 \T1/ptm/m/n/10 3.x.y to be up-dated to those cur-rently in
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[]\T1/pcr/m/n/10 matchConcordance []\T1/ptm/m/n/10 con-verts from out-put lo-ca
-tions to source lo-ca-tions. The
[1894]
Underfull \hbox (badness 1259) in paragraph at lines 2413--2416
[]\T1/ptm/m/n/10 The de-fault method of []\T1/pcr/m/n/10 as.Rconcordance []\T1/
ptm/m/n/10 searches for strings match-ing the pat-tern of
Underfull \hbox (badness 1648) in paragraph at lines 2417--2423
[]\T1/pcr/m/n/10 followConcordance []\T1/ptm/m/n/10 is used when a file is tran
s-formed more than once. The first
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\T1/ptm/m/n/10 trans-for-ma-tion records a con-cor-dance in the file which is r
ead as []\T1/pcr/m/n/10 prevConcordance[]\T1/ptm/m/n/10 .
[1895] [1896]
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 []\T1/pcr/m/n/10 package_dependencies(packages = NULL, db = NULL, which = "str
ong", 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests",
Underfull \hbox (badness 1558) in paragraph at lines 2553--2561
\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor,
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 []\T1/pcr/m/n/9 myPkgs <- c("MASS", "Matrix", "KernSmooth", "class", "cluster"
, "codetools")[] 
[1897]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2622--2622
 []    \T1/pcr/m/n/10 align = TRUE, character_only = TRUE, include_declarations
 = TRUE)[] 
[1898] [1899] [1900] [1901]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2906--2906
 [] \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macros", "system.
Rd"),[] 
[1902]
Underfull \hbox (badness 2486) in paragraph at lines 2951--2959
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion 3.2.0, User-d
efined macros may be given in a sep-a-rate file us-ing
[1903] [1904]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 3163--3163
 []\T1/pcr/m/n/10 checkDocFiles   (package, dir, lib.loc = NULL, chkInternal = 
FALSE) 
[1905]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 3167--3167
 []\T1/pcr/m/n/10 checkRdContents (package, dir, lib.loc = NULL, chkInternal = 
FALSE)[] 
[1906] [1907] [1908]
Underfull \hbox (badness 1072) in paragraph at lines 3359--3361
[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-
tor of links, as re-turned by
[1909] [1910] [1911] [1912] [1913]
Overfull \hbox (72.78088pt too wide) in paragraph at lines 3707--3707
 []             \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macro
s", "system.Rd"))[] 
Underfull \hbox (badness 5417) in paragraph at lines 3745--3755
[]\T1/ptm/m/n/10 By de-fault, the tags \T1/pcr/m/n/10 \S3method\T1/ptm/m/n/10 ,
 \T1/pcr/m/n/10 \S4method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \command\T1/ptm/m/n/10
 , \T1/pcr/m/n/10 \docType\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \email\T1/ptm/m/n/10 
,
[1914] [1915] [1916]
Underfull \hbox (badness 4108) in paragraph at lines 3955--3962
[]\T1/ptm/m/n/10 This func-tion starts the in-ter-nal HTTP server, which runs o
n the loop-back in-ter-face
[1917] [1918]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4055--4055
 []                      \T1/pcr/m/n/10 types = c("examples", "tests", "vignett
es"),[] 
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 []\T1/pcr/m/n/10 testInstalledBasic(scope = c("basic", "devel", "both", "inter
net"))[] 
Underfull \hbox (badness 10000) in paragraph at lines 4075--4077
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1919]
Underfull \hbox (badness 2932) in paragraph at lines 4092--4098
[]\T1/pcr/m/n/10 testInstalledBasic []\T1/ptm/m/n/10 runs the ba-sic tests, if 
in-stalled. This should be run with
[1920]
Underfull \hbox (badness 7832) in paragraph at lines 4214--4217
[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/pcr/m/n/10 texi2dvi []\T1/ptm/m/n/10 5
.0 and later; []\T1/pcr/m/n/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-ti
on
[1921] [1922] [1923] [1924]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4449--4449
 []  \T1/pcr/m/n/10 "mac.binary", "win.binary"), verbose.level = as.integer(dry
run),[] 
[1925] [1926]
Overfull \hbox (96.78088pt too wide) in paragraph at lines 4611--4611
 []\T1/pcr/m/n/10 update_pkg_po(pkgdir, pkg = NULL, version = NULL, mergeOpts =
 "", copyright, bugs) 
Underfull \hbox (badness 3118) in paragraph at lines 4622--4626
[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/pcr/m/n/10 m
sgmerge []\T1/ptm/m/n/10 in ad-di-tion to
Underfull \hbox (badness 10000) in paragraph at lines 4626--4629
[]\T1/ptm/m/n/10 optional char-ac-ter strings for the `[]\T1/pcr/m/n/10 Copyrig
ht[]\T1/ptm/m/n/10 ' and
[1927]
Underfull \hbox (badness 6859) in paragraph at lines 4642--4647
[]\T1/ptm/m/n/10 All ex-ist-ing files in di-rec-tory []\T1/pcr/m/n/10 po []\T1/
ptm/m/n/10 with names `\T1/pcr/m/n/10 R-\T1/ptm/m/sl/10 lang\T1/pcr/m/n/10 .po\
T1/ptm/m/n/10 ' are up-dated from
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/pcr/m/n/10 po
/\T1/ptm/m/sl/10 pkgname\T1/pcr/m/n/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. T
he
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in t
he pack-age are ex-am-ined to cre-ate a file
[1928] [1929] [1930]
Underfull \hbox (badness 10000) in paragraph at lines 4876--4878
[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 vignetteEngine[][][][]\T1/ptm/m/n/10 
, such as []\T1/pcr/m/n/10 "utils::Sweave" []\T1/ptm/m/n/10 or
[1931]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4905--4905
 []               \T1/pcr/m/n/10 verbose = FALSE, unpacked = FALSE, subdirs = F
ALSE,[] 
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 []               \T1/pcr/m/n/10 latestOnly = TRUE, addFiles = FALSE, rds_compr
ess = "xz",[] 
Underfull \hbox (badness 3240) in paragraph at lines 4919--4922
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/10 ',
Underfull \hbox (badness 1742) in paragraph at lines 4923--4933
[]\T1/pcr/m/n/10 "Package"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Version"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Priority"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Depe
nds"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Imports"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1127) in paragraph at lines 4961--4967
[]\T1/pcr/m/n/10 write_PACKAGES []\T1/ptm/m/n/10 scans the named di-rec-tory fo
r R pack-ages, ex-tracts in-for-ma-tion from
Underfull \hbox (badness 1635) in paragraph at lines 4961--4967
\T1/ptm/m/n/10 each pack-age's `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file
, and writes this in-for-ma-tion into the `\T1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/1
0 ',
[1932]
Underfull \hbox (badness 1571) in paragraph at lines 4989--4993
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
Underfull \hbox (badness 2772) in paragraph at lines 5015--5020
\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 PACKAGES.gz\T1/ptm/m/n/10 ' files. See [][][
]\T1/pcr/m/n/10 update_PACKAGES[][][] []\T1/ptm/m/n/10 for ef-fi-ciently up-dat
-ing ex-ist-ing
[1933] [1934]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5157--5157
 []\T1/pcr/m/n/9 xgettext(tmpPkg, asCall=TRUE )[[1]] # default; shows  \TS1/pcr
/m/n/9 ' \T1/pcr/m/n/9 sqrt(as.complex(x)) \TS1/pcr/m/n/9 '[] 
[1935]) (./utils-pkg.tex [1936]
Chapter 14.
Underfull \hbox (badness 1072) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
[1937] [1938] [1939] [1940]
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 []\T1/pcr/m/n/9 find("cor", numeric = TRUE)                     # numbers with
 these names[] 
[1941] [1942]
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\T1/ptm/m/n/10 are []\T1/pcr/m/n/10 c("vertical", "horizontal", "cascade", "min
imize",
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 of win-dow 
han-dles, by de-fault pro-duced by
[1943]
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 []\T1/pcr/m/n/9 # This default is useful only in SDI mode:  it will tile any F
irefox window[] 
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 []\T1/pcr/m/n/9 .arrangeWindowsDefaults <- list(c("R", "all"), pattern = c("",
 "Firefox"))[] 
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 []         \T1/pcr/m/n/10 prompts = getOption("askYesNo", gettext(c("Yes", "No
", "Cancel"))),[] 
[1944] [1945] [1946]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 686--686
 []\T1/pcr/m/n/10 aspell_package_Rd_files(dir, drop = c("\\author", "\\referenc
es"), 
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 []\T1/pcr/m/n/10 aspell_package_R_files(dir, ignore = character(), control = l
ist(),[] 
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 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 694--694
 []\T1/pcr/m/n/10 aspell_package_C_files(dir, ignore = character(), control = l
ist(),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 695--695
 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
[1947]
Underfull \hbox (badness 10000) in paragraph at lines 729--735
[]\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 aspell_package_Rd_files[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 4416) in paragraph at lines 729--735
[]\T1/pcr/m/n/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 a
spell_package_C_files []\T1/ptm/m/n/10 per-form spell check-
[1948] [1949] [1950] [1951]
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 []\T1/pcr/m/n/10 bibentry(bibtype, textVersion = NULL, header = NULL, footer =
 NULL, 
[1952]
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[][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if Bib-TeX co
de should be given ad-di-tion-ally;
Underfull \hbox (badness 5533) in paragraph at lines 1127--1133
\T1/ptm/m/n/10 cur-rently ap-plies only to []\T1/pcr/m/n/10 style = "citation"[
]\T1/ptm/m/n/10 . The de-fault for
Underfull \hbox (badness 4739) in paragraph at lines 1127--1133
\T1/ptm/m/n/10 the []\T1/pcr/m/n/10 print() []\T1/ptm/m/n/10 method de-pends on
 the num-ber of (bib) en-tries and
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\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
Underfull \hbox (badness 10000) in paragraph at lines 1136--1138
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1953] [1954]
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[]\T1/ptm/m/n/10 The DOI ([][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Digital _ Object _
[1955]
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 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1956]
[1957] [1958] [1959] [1960] [1961]
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[]\T1/ptm/m/n/10 For ex-am-ple, sup-pose that on a data set which you know to b
e quite large the com-
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\T1/ptm/m/n/10 mand []\T1/pcr/m/n/10 data.frame(x, y, z, monday, tuesday) []\T1
/ptm/m/n/10 never re-turns. Do not re-port that
[1962] [1963]
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 []                                     \T1/pcr/m/n/9 data = infert, family = b
inomial())))[] 
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 []\T1/pcr/m/n/10 changedFiles(before, after, path = before$path, timestamp = b
efore$timestamp,[] 
[1964] [1965]
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 []\T1/pcr/m/n/9 snapshot <- fileSnapshot(dir, timestamp = tempfile("timestamp"
), md5sum=TRUE)[] 
[1966]
Underfull \hbox (badness 2277) in paragraph at lines 2102--2107
[]\T1/pcr/m/n/10 charClass []\T1/ptm/m/n/10 was added in \T1/phv/m/n/10 R \T1/p
tm/m/n/10 4.1.0. A less di-rect way to ex-am-ine char-ac-ter classes
[1967]
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 []\T1/pcr/m/n/9 cl <- c("alnum", "alpha", "blank", "digit", "graph", "punct", 
"upper", "xdigit")[] 
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 []\T1/pcr/m/n/9 X <- as.data.frame(X); row.names(X) <- sQuote(intToUtf8(x, mul
tiple = TRUE))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2144--2144
 []\T1/pcr/m/n/9 ## How many printable characters are there? (Around 280,000 in
 Unicode 13.)[] 
[1968] [1969]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2292--2292
 []\T1/pcr/m/n/10 chooseBioCmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1970]
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 []\T1/pcr/m/n/10 chooseCRANmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1971]
Underfull \hbox (badness 1117) in paragraph at lines 2459--2466
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/pcr/m/n/10 citation() []\T1/
ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print
Underfull \hbox (badness 1400) in paragraph at lines 2459--2466
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
[1972] [1973]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2542--2542
 []\T1/pcr/m/n/10 citeNatbib(keys, bib, textual = FALSE, before = NULL, after =
 NULL,[] 
[1974]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2662--2662
 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
[1975]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 2702--2702
 []\T1/pcr/m/n/10 citEntry(entry, textVersion = NULL, header = NULL, footer = N
ULL, ...) 
Underfull \hbox (badness 1082) in paragraph at lines 2731--2735
[][][]\T1/pcr/m/n/10 citation[][][] []\T1/ptm/m/n/10 for more in-for-ma-tion ab
out cit-ing R and R pack-ages and `\T1/pcr/m/n/10 CITATION\T1/ptm/m/n/10 ' file
s;
[1976]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cli
pboard}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2736 ... the Clipboard in MS Windows}{clipboard}
                                                  
Underfull \hbox (badness 1163) in paragraph at lines 2767--2769
[]\T1/ptm/m/n/10 The Win-dows clip-board of-fers data in a num-ber of for-mats:
 see e.g. [][]$\T1/pcr/m/n/10 https : / / docs .
Overfull \vbox (1.12102pt too high) has occurred while \output is active
[1977] [1978]
Underfull \hbox (badness 10000) in paragraph at lines 2860--2862
[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[1979] [1980] [1981]
Underfull \hbox (badness 10000) in paragraph at lines 3078--3080
[]\T1/ptm/m/n/10 character string, in-di-cat-ing which type of pack-ages: see
[1982] [1983] [1984] [1985]
Underfull \hbox (badness 1762) in paragraph at lines 3371--3374
[]\T1/ptm/m/n/10 To just look in the `\T1/pcr/m/n/10 data\T1/ptm/m/n/10 ' di-re
c-tory of the cur-rent work-ing di-rec-tory, set []\T1/pcr/m/n/10 package =
[1986]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3463--3463
 []\T1/pcr/m/n/9 try(data(package = "rpart"), silent = TRUE) # list the data se
ts in the rpart package[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3464--3464
 []\T1/pcr/m/n/9 data(USArrests, "VADeaths")    # load the data sets \TS1/pcr/m
/n/9 '\T1/pcr/m/n/9 USArrests\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and \TS1/pcr/m/n/9 
'\T1/pcr/m/n/9 VADeaths\TS1/pcr/m/n/9 '[] 
[1987]
Underfull \hbox (badness 2452) in paragraph at lines 3538--3541
[]\T1/ptm/m/n/10 The data en-try win-dow re-sponds to X re-sources of class []\
T1/pcr/m/n/10 R_dataentry[]\T1/ptm/m/n/10 . Re-sources
[1988] [1989] [1990] [1991] [1992] [1993]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 3967--3967
 []  \T1/pcr/m/n/9 DLL.version(file.path(R.home(), "library/stats/libs", .Platf
orm$r_arch, "stats.dll"))[] 
[1994]
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[]\T1/ptm/m/n/10 Support for method []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10
 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[1995]
Underfull \hbox (badness 1072) in paragraph at lines 4109--4113
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/pcr/m/n/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[1996]
Underfull \hbox (badness 7238) in paragraph at lines 4165--4170
[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 "curl" []\T1/ptm/m/n/10 meth-ods, prox-ies can be set \T1/ptm/m/it/1
0 via \T1/ptm/m/n/10 the en-vi-ron-
Underfull \hbox (badness 1337) in paragraph at lines 4165--4170
\T1/ptm/m/n/10 ment vari-ables []\T1/pcr/m/n/10 http_proxy []\T1/ptm/m/n/10 or 
[]\T1/pcr/m/n/10 ftp_proxy[]\T1/ptm/m/n/10 . See [][]$\T1/pcr/m/n/10 https : / 
/ curl . se / libcurl / c /
Underfull \hbox (badness 1184) in paragraph at lines 4180--4196
\T1/ptm/m/n/10 string con-tain-ing `[]\T1/pcr/m/n/10 "Schannel"[]\T1/ptm/m/n/10
 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-
[1997] [1998]
Underfull \hbox (badness 4660) in paragraph at lines 4306--4309
\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
Underfull \hbox (badness 10000) in paragraph at lines 4330--4332
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 do
wnload.file[][][] []\T1/ptm/m/n/10 and
[1999] [2000] [2001]
Underfull \hbox (badness 1565) in paragraph at lines 4517--4521
[]\T1/ptm/m/n/10 Data frame columns are co-erced on in-put to \T1/ptm/m/it/10 c
har-ac-ter \T1/ptm/m/n/10 un-less nu-meric (in the sense of
[2002]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4600--4600
 []        \T1/pcr/m/n/10 character.only = FALSE, give.lines = FALSE, local = F
ALSE,[] 
[2003]
Underfull \hbox (badness 1910) in paragraph at lines 4634--4641
\T1/ptm/m/n/10 is saved, then ini-tial-ized to a spec-i-fied state, the ex-am-p
le is run and
Underfull \hbox (badness 1655) in paragraph at lines 4634--4641
\T1/ptm/m/n/10 the (saved) state is re-stored. []\T1/pcr/m/n/10 setRNG = TRUE [
]\T1/ptm/m/n/10 sets the same state as
Underfull \hbox (badness 2846) in paragraph at lines 4634--4641
[]\T1/pcr/m/n/10 R CMD [][]check[][][] []\T1/ptm/m/n/10 does for run-ning a pac
k-age's ex-am-ples. This is cur-
Underfull \hbox (badness 3460) in paragraph at lines 4634--4641
\T1/ptm/m/n/10 rently equiv-a-lent to []\T1/pcr/m/n/10 setRNG = {RNGkind("defau
lt", "default",
Underfull \hbox (badness 1931) in paragraph at lines 4641--4648
[]\T1/ptm/m/n/10 logical (or []\T1/pcr/m/n/10 "default"[]\T1/ptm/m/n/10 ) in-di
-cat-ing if [][][]\T1/pcr/m/n/10 devAskNewPage[][][](ask = TRUE)
[2004] [2005] [2006]
Underfull \hbox (badness 5939) in paragraph at lines 4887--4889
[]\T1/ptm/m/n/10 An en-try in []\T1/pcr/m/n/10 getOption("repos") []\T1/ptm/m/n
/10 named `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' which is not the de-fault
[2007] [2008]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5030--5030
 []\T1/pcr/m/n/9 # Set a breakpoint in both copies of that function, assuming o
ne is in the[] 
[2009] [2010]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.format}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5101 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.5101 ...mat Unordered and Ordered Lists}{format}
                                                   [2011] [2012] [2013]
[2014] [2015] [2016] [2017] [2018]
Underfull \hbox (badness 1622) in paragraph at lines 5624--5628
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2019] [2020] [2021] [2022] [2023]
Underfull \hbox (badness 1448) in paragraph at lines 6003--6008
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
[2024] [2025]
Overfull \hbox (96.78088pt too wide) in paragraph at lines 6153--6153
 []\T1/pcr/m/n/10 ## NB: The methods for \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 data.f
rame\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 and \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 array\
TS1/pcr/m/n/10 '  \T1/pcr/m/n/10 are identical to the \TS1/pcr/m/n/10 '\T1/pcr/
m/n/10 matrix\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 one[] 
[2026]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 6165--6165
 []\T1/pcr/m/n/10 tail(x, n = 6L, keepnums = TRUE, addrownums, ...) # exported 
as tail.matrix()[] 
[2027] [2028]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6299--6299
 []    \T1/pcr/m/n/9 ## BUT if I use "useAttrib(.)", this is *not* ok, when n i
s of length 2:[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 6300--6300
 []    \T1/pcr/m/n/9 ## --- because [i,j]-indexing of data frames *also* drops 
"other" attributes ..[] 
[2029] [2030]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6510--6510
 [] \T1/pcr/m/n/9 ## -> nicely formatted pdf -- including math formula -- for h
elp(dgamma):[] 
[2031]
Underfull \hbox (badness 10000) in paragraph at lines 6594--6596
[]\T1/ptm/m/n/10 The post-ing guide ([][]$\T1/pcr/m/n/10 https : / / www . r-[]
project . org / posting-[]guide . html$[][]\T1/ptm/m/n/10 ), also
[2032]
Underfull \hbox (badness 1502) in paragraph at lines 6643--6648
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
Underfull \hbox (badness 2103) in paragraph at lines 6643--6648
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2033] [2034] [2035]
Underfull \hbox (badness 10000) in paragraph at lines 6816--6825
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
Underfull \hbox (badness 10000) in paragraph at lines 6816--6825
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 R.home("docs")/html/packages.html\T1/ptm/m/n/10 
', which can be re-made by
[2036]
Underfull \hbox (badness 2150) in paragraph at lines 6880--6883
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
Underfull \hbox (badness 5175) in paragraph at lines 6896--6899
[]\T1/pcr/m/n/10 hsearch_db() []\T1/ptm/m/n/10 builds and caches the help searc
h database for sub-se-quent use by
[2037] [2038]
Underfull \hbox (badness 3118) in paragraph at lines 7019--7021
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2039] [2040]
Underfull \hbox (badness 5091) in paragraph at lines 7194--7196
[]\T1/ptm/m/n/10 download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
Underfull \hbox (badness 10000) in paragraph at lines 7224--7231
[]\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 means to use []\T1/pcr/m/n/10 c("Depends
", "Imports", "LinkingTo",
Underfull \hbox (badness 10000) in paragraph at lines 7224--7231
\T1/pcr/m/n/10 "Suggests") []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pkgs []\T1/ptm
/m/n/10 and []\T1/pcr/m/n/10 c("Depends", "Imports",
Underfull \hbox (badness 1270) in paragraph at lines 7224--7231
\T1/pcr/m/n/10 "LinkingTo") []\T1/ptm/m/n/10 for added de-pen-den-cies: this in
-stalls all the pack-ages
[2041]
Underfull \hbox (badness 1270) in paragraph at lines 7239--7249
\T1/ptm/m/n/10 for the `[]\T1/pcr/m/n/10 --configure-args[]\T1/ptm/m/n/10 ' fla
g in the call to []\T1/pcr/m/n/10 R CMD INSTALL[]\T1/ptm/m/n/10 . If
Underfull \hbox (badness 4441) in paragraph at lines 7282--7285
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed to
Underfull \hbox (badness 2837) in paragraph at lines 7282--7285
[]\T1/pcr/m/n/10 R CMD INSTALL []\T1/ptm/m/n/10 for a source pack-age in-stall.
 E.g., []\T1/pcr/m/n/10 c("--html",
Underfull \hbox (badness 1424) in paragraph at lines 7290--7293
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2042]
Underfull \hbox (badness 2376) in paragraph at lines 7361--7368
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/pcr/m/n
/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
Underfull \hbox (badness 5175) in paragraph at lines 7361--7368
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages
Underfull \hbox (badness 1342) in paragraph at lines 7361--7368
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/pcr/m/n/10 type = "source" []\T1/pt
m/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2043]
Underfull \hbox (badness 1314) in paragraph at lines 7449--7456
[]\T1/pcr/m/n/10 install.packages []\T1/ptm/m/n/10 needs to be able to com-pute
 all the de-pen-den-cies of []\T1/pcr/m/n/10 pkgs []\T1/ptm/m/n/10 from
[2044]
Underfull \hbox (badness 10000) in paragraph at lines 7532--7537
[][][]\T1/pcr/m/n/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pac
kages[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (25.98041pt too wide) in paragraph at lines 7555--7555
 []  \T1/pcr/m/n/9 configure.args = c(RNetCDF = "--with-netcdf-include=/usr/inc
lude/udunits2"))[] 
[2045]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
Underfull \hbox (badness 1983) in paragraph at lines 7605--7608
[]\T1/pcr/m/n/10 installed.packages []\T1/ptm/m/n/10 scans the `\T1/pcr/m/n/10 
DESCRIPTION\T1/ptm/m/n/10 ' files of each pack-age found along
[2046]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7652--7652
 []\T1/pcr/m/n/9 plic <- installed.packages(.Library, priority = "high", fields
 = "License")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7657--7657
 []\T1/pcr/m/n/9 ## Keep packages that come with R (priority="high") and all ot
hers separate![] 
[2047] [2048]
Underfull \hbox (badness 4132) in paragraph at lines 7783--7785
[]\T1/ptm/m/n/10 The ac-tual link-ing com-mand is con-structed by the ver-sion 
of []\T1/pcr/m/n/10 libtool []\T1/ptm/m/n/10 in-stalled at
[2049] [2050] [2051]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7950--7950
 []\T1/pcr/m/n/9 ls.str(mode = "list")   #- what are the structured objects I h
ave defined?[] 
[2052] [2053]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 8093--8093
 []\T1/pcr/m/n/10 make.socket(host = "localhost", port, fail = TRUE, server = F
ALSE) 
[2054]
Underfull \hbox (badness 10000) in paragraph at lines 8133--8135
[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[2055]
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[]\T1/ptm/m/n/10 a sym-bol or char-ac-ter string nam-ing a class: only used if
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/pcr/m/n/10 methods(..)[]\T1/ptm
/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
[2056] [2057] [2058] [2059]
Underfull \hbox (badness 1859) in paragraph at lines 8471--8474
[]\T1/ptm/m/n/10 logical spec-i-fy-ing that the news should be opened in the br
owser (by
Underfull \hbox (badness 1052) in paragraph at lines 8490--8500
\T1/ptm/m/n/10 ac-cord-ing to ver-sion us-ing \T1/pcr/m/n/10 section \T1/ptm/m/
n/10 el-e-ments with names start-ing with a suit-able pre-fix
[2060]
Underfull \hbox (badness 1655) in paragraph at lines 8565--8568
[]\T1/ptm/m/n/10 A data frame in-her-it-ing from class []\T1/pcr/m/n/10 "news_d
b"[]\T1/ptm/m/n/10 , with [][][]\T1/pcr/m/n/10 attributes[][][] "package" []\T1
/ptm/m/n/10 (and
Overfull \hbox (25.98041pt too wide) in paragraph at lines 8576--8576
 []\T1/pcr/m/n/9 db4 <- news(Version == "4.0.0" & grepl("^BUG", Category) & gre
pl("PR#", Text),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 8584--8584
 []\T1/pcr/m/n/9 ## News from a date range (\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Matri
x\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 is there in a regular R installation):[] 
[2061]
Overfull \hbox (47.58038pt too wide) in paragraph at lines 8592--8592
 []\T1/pcr/m/n/9 ## Which categories have been in use? % R-core maybe should st
andardize a bit more[] 
[2062]
Underfull \hbox (badness 1917) in paragraph at lines 8679--8681
[]\T1/pcr/m/n/10 "B"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "KiB"[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 "MiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "GiB"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "TiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "PiB"[]\T1/ptm/m/
n/10 ,
[2063]
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[2065] [2066]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 8953--8953
 []            \T1/pcr/m/n/10 date.fields = c("Date", "Packaged", "Date/Publica
tion", "Built"),[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 8954--8954
 []            \T1/pcr/m/n/10 tryFormats = c("%Y-%m-%d", "%Y/%m/%d", "%D", "%m/
%d/%y"),[] 
Overfull \hbox (84.78088pt too wide) in paragraph at lines 8955--8955
 []            \T1/pcr/m/n/10 desc = packageDescription(pkg, lib.loc=lib.loc, f
ields=date.fields))[] 
[2067]
Underfull \hbox (badness 10000) in paragraph at lines 8983--8985
[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 asDateBuilt()[]\T1/ptm/m/n/10 , a [][][]\
T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string as from
Underfull \hbox (badness 10000) in paragraph at lines 8997--8999
[]\T1/pcr/m/n/10 packageVersion() []\T1/ptm/m/n/10 is a con-ve-nience short-cut
, al-low-ing things like []\T1/pcr/m/n/10 if
Underfull \hbox (badness 1259) in paragraph at lines 9005--9010
[]\T1/ptm/m/n/10 If a `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the 
given pack-age is found and can suc-cess-fully be read,
[2068]
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 []          \T1/pcr/m/n/9 identical(pu, packageDate("stats"))) # as "utils" an
d "stats" are[] 
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 []                                   \T1/pcr/m/n/9 # both \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 base R\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and "Built" at same time[] 
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("ok", "upgrade",
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("installed", "not
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nt"),[] 
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 []       \T1/pcr/m/n/10 braces = list(given = "", family = "", email = c("<", 
">"),[] 
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 []         \T1/pcr/m/n/9 "S original, <http://statwww.epfl.ch/davison/BMA/libr
ary.html>"),[] 
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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 []         \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", "
no.loss"),[] 
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 []\T1/pcr/m/n/9 dd <- read.DIF(file.path(udir, "exDIF.dif"), header = TRUE, tr
anspose = TRUE)[] 
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 []\T1/pcr/m/n/9 read.fwf(ff, widths = list(c(1,0, 2,3), c(2,2,2))) #> 1 NA 23 
456 98 76 54[] 
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ryLogical = TRUE,[] 
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skip,[] 
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pNul = FALSE)[] 
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[]\T1/ptm/m/n/10 Using []\T1/pcr/m/n/10 row.names = NULL []\T1/ptm/m/n/10 force
s row num-ber-ing. Miss-ing or []\T1/pcr/m/n/10 NULL
[2096]
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 de-ter-m
in-ing if columns con-sist-ing en-tirely of []\T1/pcr/m/n/10 "F"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "FALSE"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "TRUE" []\T1/pt
m/m/n/10 should be con-verted to [][][]\T1/pcr/m/n/10 logical[][][][]\T1/ptm/m/
n/10 ; passed to
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 []\T1/pcr/m/n/10 readRegistry(key, hive = c("HLM", "HCR", "HCU", "HU", "HCC", 
"HPD"), 
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bit"))[] 
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are
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\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 HKEY_CLASSES_ROOT[]\T1/ptm/m/n/10 .
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[]\T1/pcr/m/n/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_USER
S[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_CURRENT_CONFIG
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 []        \T1/pcr/m/n/10 ipar <- list(mean = c(0, 1), vcov = c bind(c(1, 1), c
(1, 0))) 
[2104] [2105] [2106] [2107]
Underfull \hbox (badness 10000) in paragraph at lines 11787--11791
\T1/pcr/m/n/10 en . wikipedia . org / w / index . php ? title = Roman _ numeral
s & oldid = 78252134$[][]\T1/ptm/m/n/10 .
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 []\T1/pcr/m/n/9 as.roman(c(NA, 1:3, "", strrep("I", 1:6))) # + NA with a warni
ng for "IIIIII"[] 
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 []\T1/pcr/m/n/9 ## simple consistency checks -- arithmetic when result is in  
{1,2,..,3899} :[] 
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 []\T1/pcr/m/n/10 4. |     \-base:::tryCatchOne(expr, names, parentenv, handler
s[[1L]])[] 
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 []\T1/pcr/m/n/10 5. |       \-base:::doTryCatch(return(expr), name, parentenv,
 handler)[] 
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 []\T1/pcr/m/n/10 Rprofmem(filename = "Rprofmem.out", append = FALSE, threshold
 = 0) 
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[]\T1/ptm/m/n/10 If `[]\T1/pcr/m/n/10 --default-packages[]\T1/ptm/m/n/10 ' is n
ot used, then []\T1/pcr/m/n/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-me
nt vari-
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\T1/ptm/m/n/10 able []\T1/pcr/m/n/10 R_SCRIPT_DEFAULT_PACKAGES[]\T1/ptm/m/n/10 
. If this is set, then it takes prece-dence over
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 []\T1/pcr/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 sessionInfo()\TS1/pcr/m/n/9 '[] 
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 []            \T1/pcr/m/n/10 restrict = c("functions", "descriptions", "news",
 "Rfunctions",[] 
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 []                         \T1/pcr/m/n/10 "Rmanuals", "READMEs", "views", "vig
nettes"),[] 
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 []            \T1/pcr/m/n/10 sortby = c("score", "date:late", "date:early", "s
ubject",[] 
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 []                       \T1/pcr/m/n/10 "subject:descending", "size", "size:de
scending"),[] 
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\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 score[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 date:
late []\T1/ptm/m/n/10 for sort-ing by date with lat-est re-sults first,
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\T1/ptm/m/n/10 der, []\T1/pcr/m/n/10 subject:descending []\T1/ptm/m/n/10 for re
-verse al-pha-bet-i-cal or-der, []\T1/pcr/m/n/10 size []\T1/ptm/m/n/10 or
[2116]
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 []\T1/pcr/m/n/9 fullquery <- RSiteSearch("lattice", restrict = c("vignettes","
Rfunctions"))[] 
[2117]
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[]\T1/ptm/m/n/10 Character string spec-i-fy-ing whether emacs style ([]\T1/pcr/
m/n/10 "etags"[]\T1/ptm/m/n/10 ) or vi style
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / www . gnu . org / software /
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 []             \T1/pcr/m/n/10 split = FALSE, quiet = FALSE, drop.evalFALSE = F
ALSE, ...)[] 
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[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 stylepath []\T1/ptm/m/n/10 i
s now taken from the en-vi-ron-ment vari-able
[2121]
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 The use of fancy quotes (see [][][]\T1/pcr/m/n/10 sQuote[][][]
[]\T1/ptm/m/n/10 ) can cause prob-lems when set-ting \T1/phv/m/n/10 R \T1/ptm/m
/n/10 out-put in
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rent")[] 
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
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[]\T1/ptm/m/n/10 The file `\T1/pcr/m/n/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ures
 the R GUI ([]\T1/pcr/m/n/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows
 and
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[]\T1/ptm/m/n/10 At the time of writ-ing `\T1/pcr/m/n/10 Rdevga\T1/ptm/m/n/10 '
 con-fig-ured the map-ping of font num-bers to fonts, and
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the plat-form \T1/phv/m/n/10
 R \T1/ptm/m/n/10 was built un-der. Where
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
g
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
g
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 []\T1/pcr/m/n/9 toLatex(sI, locale = FALSE) # shortest; possibly desirable at 
end of report[] 
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[]\T1/ptm/m/n/10 Repository `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' is treated
 spe-cially: the value is taken from the cur-rent set-ting of
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 []\T1/pcr/m/n/10 setWindowTitle(suffix, title = paste(getIdentification(), suf
fix)) 
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
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[]\T1/pcr/m/n/10 getSrcFilename []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 getSrcDir
ectory []\T1/ptm/m/n/10 re-turn char-ac-ter vec-tors hold-ing the file-
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[]\T1/ptm/m/n/10 logical; if []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault),
 [][][]\T1/pcr/m/n/10 deparse[][][](control = <S>) []\T1/ptm/m/n/10 will not ha
ve
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[][][]\T1/pcr/m/n/10 options[][][]("width")[]\T1/ptm/m/n/10 ; note that this ha
s only a weak ef-fect, un-less
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[]\T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 options[][][][]\T1/ptm/m/n/10 ) whic
h de-faults to []\T1/pcr/m/n/10 "no" []\T1/ptm/m/n/10 for back com-pat-i-bil-it
y rea-sons;
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[]\T1/ptm/m/n/10 numeric or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 as by de-fau
lt, de-ter-min-ing the []\T1/pcr/m/n/10 nlines []\T1/ptm/m/n/10 ar-gu-ment to
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 []\T1/pcr/m/n/9 str(.Machine, digits.d = 20) # extra digits for identification
 of binary numbers[] 
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ng" non-ASCII:[] 
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e  1  (in UTF-8!):[] 
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[]\T1/ptm/m/n/10 Options other than []\T1/pcr/m/n/10 memory = "none" []\T1/ptm/
m/n/10 ap-ply only to files pro-duced by
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[]\T1/ptm/m/n/10 further ar-gu-ments passed to the driver's setup func-tion. Se
e
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[][][]\T1/pcr/m/n/10 RweaveLatexSetup[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/
m/n/10 RtangleSetup[][][][]\T1/ptm/m/n/10 , re-spec-tively, for the ar-gu-
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fau
lt) then the avail-able syn-tax ob-jects are con-sulted in
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\T1/ptm/m/n/10 turn, and se-lected if their []\T1/pcr/m/n/10 extension []\T1/pt
m/m/n/10 com-po-nent matches (as a reg-exp) the file
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\T1/ptm/m/n/10 name. Ob-jects []\T1/pcr/m/n/10 SweaveSyntaxNoweb []\T1/ptm/m/n/
10 (with []\T1/pcr/m/n/10 extension = "[.][rsRS]nw$"[]\T1/ptm/m/n/10 ) and
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\T1/ptm/m/n/10 si-bly use-ful val-ues in-clude `[]\T1/pcr/m/n/10 -h[]\T1/ptm/m/
n/10 ' (fol-low sym-bolic links, also `[]\T1/pcr/m/n/10 -L[]\T1/ptm/m/n/10 ' on
 some plat-forms),
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\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 --acls[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --
exclude-backups[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --exclude-vcs[]\T1/ptm/m/n
/10 ' (and sim-i-lar) and on Win-dows
[2148]
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[]\T1/ptm/m/n/10 A con-ve-nient and ro-bust way to set op-tions for GNU []\T1/p
cr/m/n/10 tar []\T1/ptm/m/n/10 is via en-vi-ron-ment vari-able
[2149]
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[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 is set t
o the com-mand []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment 
vari-able
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / pubs .
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\T1/pcr/m/n/10 opengroup . org / onlinepubs / 9699919799 / utilities / pax . ht
ml # tag _ 20 _ 92 _
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 []             \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc,
 ...),[] 
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 []             \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc,
 ...),[] 
[2159]
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[]\T1/ptm/m/n/10 Download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
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\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
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[]\T1/ptm/m/n/10 by de-fault all in-stalled pack-ages, [][][]\T1/pcr/m/n/10 ins
talled.packages[][][](lib.loc =
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[]\T1/ptm/m/n/10 Arguments such as []\T1/pcr/m/n/10 destdir []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 dependencies []\T1/ptm/m/n/10 to be
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\T1/ptm/m/n/10 passed to [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 and []\T1/pcr/m/n/10 ignore_repo_cache[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 max_repo_cache_age []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 noCac
he []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 available.packages[][][]
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
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[]\T1/pcr/m/n/10 available = NULL []\T1/ptm/m/n/10 make a call to []\T1/pcr/m/n
/10 available.packages(contriburl =
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\T1/pcr/m/n/10 contriburl, method = method) []\T1/ptm/m/n/10 and hence by de-fa
ult fil-ters on \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion, OS type
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[]\T1/ptm/m/n/10 Take care when us-ing []\T1/pcr/m/n/10 dependencies []\T1/ptm/
m/n/10 (passed to [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 )
 with
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[][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pa
ckages[][][][]\T1/ptm/m/n/10 ,
[2161]
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 []\T1/pcr/m/n/9 ## Not run: url.show("https://www.stats.ox.ac.uk/pub/datasets/
csb/ch3a.txt") 
[2162] [2163] [2164]
Underfull \hbox (badness 2293) in paragraph at lines 15741--15744
[][][]\T1/pcr/m/n/10 browseVignettes[][][] []\T1/ptm/m/n/10 for an HTML-based v
i-gnette browser; [][][]\T1/pcr/m/n/10 RShowDoc[][][](<basename>,
[2165]
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 []\T1/pcr/m/n/9 ## Note that \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 package = *\TS1/pcr
/m/n/9 ' \T1/pcr/m/n/9 is much faster in the case of many installed packages:[]
 
[2166]
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 []                      \T1/pcr/m/n/9 lm(weight ~ (Time + I(Time^2)) * Diet, d
ata = DAT)))[] 
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 []                 \T1/pcr/m/n/9 nls(weight ~ SSlogis(Time, Asym, xmid, scal),
 data = DD)))[] 
[2167] [2168]
Underfull \hbox (badness 1297) in paragraph at lines 15978--15980
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the ac-tion when that menu i
s se-lected, or
[2169]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 winMenuDel []\T1/ptm/m/n/10 func-tion wil
l delete a menu and all of its items and sub-menus.
[2170] [2171]
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 []\T1/pcr/m/n/10 write.table(x, file = "", append = FALSE, quote = TRUE, sep =
 " ", 
[2172]
Underfull \hbox (badness 1715) in paragraph at lines 16197--16200
[]\T1/ptm/m/n/10 arguments to []\T1/pcr/m/n/10 write.table[]\T1/ptm/m/n/10 : []
\T1/pcr/m/n/10 append[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 col.names[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 sep[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dec []\T1/ptm/m/n
/10 and
Underfull \hbox (badness 10000) in paragraph at lines 16242--16244
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. []\T1/pcr/m/n/10 file =
[2173] [2174] [2175]) [2176] [2177] [2178] (./KernSmooth-pkg.tex
Chapter 15.
[2179]
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 []\T1/pcr/m/n/10 bkde2D(x, bandwidth, gridsize = c(51L, 51L), range.x, truncat
e = TRUE) 
[2180] [2181] [2182] [2183] [2184]
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 []\T1/pcr/m/n/10 dpill(x, y, blockmax = 5, divisor = 20, trim = 0.01, proptrun
 = 0.05, 
[2185] [2186] [2187] [2188]) (./MASS-pkg.tex
Chapter 16.
[2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 772--772
 []\T1/pcr/m/n/9 dreg <- cbind(sin = sin(2*pi*beav2$hours/24), cos = cos(2*pi*b
eav2$hours/24))[] 
[2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210]
[2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221]
[2222]
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 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
"F"),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2422--2422
 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
"F"),[] 
[2223] [2224] [2225] [2226]
Underfull \hbox (badness 6559) in paragraph at lines 2701--2704
[]\T1/ptm/m/n/10 further ar-gu-ments for []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10
 and graph-i-cal pa-ram-e-ters. Note that
[2227] [2228] [2229]
Underfull \hbox (badness 10000) in paragraph at lines 2871--2876
[]\T1/pcr/m/n/10 "gamma"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "geometric"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "log-normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lo
gnormal"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 2871--2876
[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "negative binomi
al"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "Poisson"[]\T1/ptm/m/n/10 ,
[2230] [2231]
Underfull \hbox (badness 4686) in paragraph at lines 3043--3045
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2232] [2233] [2234]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3243--3243
 []            \T1/pcr/m/n/10 eps.max = .Machine$double.eps^0.25, verbose = FAL
SE, ...)[] 
[2235] [2236]
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 []\T1/pcr/m/n/9 survreg(Surv(time, cens) ~ factor(pair) + treat, gehan, dist =
 "exponential")[] 
[2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247]
Underfull \hbox (badness 1845) in paragraph at lines 4173--4175
[]\T1/ptm/m/n/10 The va-ri-ety of bar-ley ([]\T1/pcr/m/n/10 "manchuria"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "svansota"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "velv
et"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trebi" []\T1/ptm/m/n/10 and
[2248] [2249] [2250] [2251] [2252] [2253] [2254]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4667--4667
 []        \T1/pcr/m/n/10 col = 5, xlab = deparse(substitute(data)), bty = "n",
 ...)[] 
[2255] [2256] [2257]
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 []\T1/pcr/m/n/10 lm.ridge(formula, data, subset, na.action, lambda = 0, model 
= FALSE, 
[2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268]
[2269] [2270] [2271]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 5944--5944
 []\T1/pcr/m/n/10 mvrnorm(n = 1, mu, Sigma, tol = 1e-6, empirical = FALSE, EISP
ACK = FALSE) 
[2272]
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 []\T1/pcr/m/n/10 negative.binomial(theta = stop("\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 theta\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 must be specified"), link = "log") 
[2273] [2274]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.npk}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6165 ...sical N, P, K Factorial Experiment}{npk}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.6165 ...sical N, P, K Factorial Experiment}{npk}
                                                   [2275] [2276] [2277]
[2278] [2279] [2280]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6585--6585
 []     \T1/pcr/m/n/9 start = list(fixed=c(L75=c(48.7, -0.03), lsc=0.24)), verb
ose = TRUE)))[] 
[2281]
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 []     \T1/pcr/m/n/10 dimen, abbrev = FALSE, ..., cex=0.7, type = c("std", "tr
ellis"))[] 
[2282] [2283] [2284] [2285] [2286] [2287]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7112--7112
 []\T1/pcr/m/n/9 nlmod <- nls(y ~  Const + A * exp(B * x), start=list(Const=100
, A=10, B=1))[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 7129--7129
 []     \T1/pcr/m/n/10 method = c("logistic", "probit", "loglog", "cloglog", "c
auchit"))[] 
[2288]
Underfull \hbox (badness 3138) in paragraph at lines 7207--7213
[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
[2289]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7277--7277
 []\T1/pcr/m/n/9 house.plr <- polr(Sat ~ Infl + Type + Cont, weights = Freq, da
ta = housing)[] 
[2290] [2291]
Underfull \hbox (badness 1389) in paragraph at lines 7386--7389
[]\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than 
[]\T1/pcr/m/n/10 min(p,
[2292] [2293]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7516--7516
 []\T1/pcr/m/n/9 fm <- lqs(stack.loss ~ ., data = stackloss, method = "S", nsam
p = "exact")[] 
[2294]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 7581--7581
 []        \T1/pcr/m/n/10 method = c("plug-in", "predictive", "debiased", "looC
V"), ...)[] 
[2295] [2296] [2297] [2298] [2299] [2300]
Underfull \hbox (badness 4686) in paragraph at lines 8019--8021
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2301] [2302]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 8138--8138
 []    \T1/pcr/m/n/10 maxit = 20, acc = 1e-4, test.vec = "resid", lqs.control =
 NULL)[] 
Underfull \hbox (badness 1590) in paragraph at lines 8162--8166
[]\T1/ptm/m/n/10 A func-tion to spec-ify the ac-tion to be taken if []\T1/pcr/m
/n/10 NA[]\T1/ptm/m/n/10 s are found. The
[2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313]
[2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 9542--9542
 []\T1/pcr/m/n/10 summary(object, method = c("XtX", "XtWX"), correlation = FALS
E, ...)[] 
[2323]
Underfull \hbox (badness 2035) in paragraph at lines 9654--9656
[]\T1/ptm/m/n/10 ``Fold your arms! Which is on top'' (Fac-tor, with lev-els []\
T1/pcr/m/n/10 "R on L"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "L on R"[]\T1/ptm/m/n
/10 ,
Underfull \hbox (badness 1158) in paragraph at lines 9669--9672
[]\T1/ptm/m/n/10 how much the stu-dent smokes. (Fac-tor, lev-els []\T1/pcr/m/n/
10 "Heavy"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Regul" []\T1/ptm/m/n/10 (reg-u-l
arly),
[2324]
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 []\T1/pcr/m/n/10 theta.md(y, mu, dfr, weights, limit = 20, eps = .Machine$doub
le.eps^0.25) 
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 []\T1/pcr/m/n/10 theta.ml(y, mu, n, weights, limit = 10, eps = .Machine$double
.eps^0.25,[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 9756--9756
 []\T1/pcr/m/n/10 theta.mm(y, mu, dfr, weights, limit = 10, eps = .Machine$doub
le.eps^0.25)[] 
[2325] [2326] [2327] [2328] [2329] [2330] [2331] [2332] [2333] [2334] [2335]
[2336] [2337]) (./Matrix-pkg.tex [2338]
Chapter 17.
Underfull \hbox (badness 10000) in paragraph at lines 35--38
[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
Underfull \hbox (badness 10000) in paragraph at lines 35--38
\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
[2339]
Underfull \hbox (badness 1769) in paragraph at lines 89--92
[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
[2340]
Underfull \hbox (badness 2229) in paragraph at lines 153--156
[]\T1/ptm/m/n/10 in gen-eral an ar-bi-trary num-ber of \T1/phv/m/n/10 R \T1/ptm
/m/n/10 ob-jects; here, when the first is
Underfull \hbox (badness 1147) in paragraph at lines 153--156
\T1/ptm/m/n/10 an []\T1/pcr/m/n/10 "[][]abIndex[][][]" []\T1/ptm/m/n/10 vec-tor
, these ar-gu-ments will be con-cate-nated to a new
[2341]
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[]\T1/ptm/m/n/10 these three meth-ods are sim-ply us-ing
Underfull \hbox (badness 10000) in paragraph at lines 262--264
[]\T1/ptm/m/n/10 There are more meth-ods, no-tably also for []\T1/pcr/m/n/10 "[
][]sparseVector[][][]"[]\T1/ptm/m/n/10 's, see
[2342] [2343]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 445--445
 []   \T1/pcr/m/n/9 band(sm5, -1, 1)# "dsyMatrix": symmetric band preserves sym
metry property[] 
[2344]
Underfull \hbox (badness 5119) in paragraph at lines 488--492
[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
Underfull \hbox (badness 1668) in paragraph at lines 492--497
[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
Overfull \hbox (4.38043pt too wide) in paragraph at lines 522--522
 []\T1/pcr/m/n/9 s1 <- bandSparse(13, k = -c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 524--524
 []\T1/pcr/m/n/9 s2 <- bandSparse(13, k =  c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
[2345]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 533--533
 []\T1/pcr/m/n/9 lLis <- lapply(list(rpois(20, 2), rpois(20,1), rpois(20,3))[c(
1:3,2:3,3:2)],[] 
[2346]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 647--647
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Fast version of Matrix :: .bd
iag() -- for the case of *many*  (k x k) matrices:[] 
Overfull \hbox (96.18033pt too wide) in paragraph at lines 648--648
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @param lmat list(<mat1>, <mat
2>, ....., <mat_N>)  where each mat_j is a  k x k \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 matrix\TS1/pcr/m/n/9 '[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 649--649
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @return a sparse (N*k x N*k) 
matrix of class  \code{"\linkS4class{dgCMatrix}"}.[] 
[2347]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 662--662
 []        \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 i :\TS1/pcr/m/n/9 ' \
T1/pcr/m/n/9 maybe there\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s a faster way (w/o matri
x indexing), but elegant?[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 663--663
 []        \T1/pcr/m/n/9 i = as.vector(matrix(0L:(M-1L), nrow=k)[, rep(seq_len(
N), each=k)]),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 668--668
 []\T1/pcr/m/n/9 l12 <- replicate(12, matrix(rpois(16, lambda = 6.4), 4,4), sim
plify=FALSE)[] 
[2348]
Underfull \hbox (badness 1874) in paragraph at lines 737--740
[]\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t
ion; [][]$\T1/pcr/m/n/10 https : / / netlib . org /
[2349] [2350]
Underfull \hbox (badness 1107) in paragraph at lines 859--864
\T1/ptm/m/n/10 sity'' of []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/
10 y[]\T1/ptm/m/n/10 , see e.g., the \T1/phv/m/n/10 R \T1/ptm/m/n/10 code in []
\T1/pcr/m/n/10 selectMethod(cbind2,
Underfull \hbox (badness 10000) in paragraph at lines 890--895
[]\T1/ptm/m/n/10 Our class def-i-ni-tion help pages men-tion-ing []\T1/pcr/m/n/
10 cbind2() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 rbind2() []\T1/ptm/m/n/10 met
h-ods:
[2351]
Overfull \hbox (72.78088pt too wide) in paragraph at lines 954--954
 []\T1/pcr/m/n/10 ##   solve(a, b, system = c("A","LDLt","LD","DLt","L","Lt","D
","P","Pt"), ...)[] 
[2352]
Underfull \hbox (badness 3612) in paragraph at lines 1041--1044
[]\T1/pcr/m/n/10 signature(from = "CHMfactor", to = "pMatrix") []\T1/ptm/m/n/10
 re-turns the per-mu-ta-tion
[2353]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cho
l}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1141 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic
ate ignored
<to be read again> 
                   \relax 
l.1141 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                   [2354] [2355]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1288--1288
 []\T1/pcr/m/n/9 ## --> see Cholesky() and its examples, for the pivot structur
e & factorization[] 
[2356]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1383--1383
 []\T1/pcr/m/n/10 Cholesky(A, perm = TRUE, LDL = !super, super = FALSE, Imult =
 0, ...) 
Underfull \hbox (badness 2277) in paragraph at lines 1411--1414
[]\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer
-ent types of ma-tri-ces. Use
[2357] [2358]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1485--1485
 []\T1/pcr/m/n/9 ## hence, the identical() check *should* work, but fails on so
me GOTOblas:[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1499--1499
 []\T1/pcr/m/n/9 dq <- function(ch) paste(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 "\TS1/p
cr/m/n/9 '\T1/pcr/m/n/9 ,ch,\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 "\TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 , sep="") ## dQuote(<UTF-8>) gives bad plots[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 1507--1507
 []\T1/pcr/m/n/9 (opts <- expand.grid(perm = c(TRUE,FALSE), LDL = c(TRUE,FALSE)
, super = c(FALSE,TRUE)))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1516--1516
 []\T1/pcr/m/n/9 str(re <- lapply(rr, expand), max.level=2) ## each has a \TS1/
pcr/m/n/9 '\T1/pcr/m/n/9 P\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and a \TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 L\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 matrix[] 
[2359]
Underfull \hbox (badness 10000) in paragraph at lines 1552--1559
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("Cholesky", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 4673) in paragraph at lines 1552--1559
[]\T1/pcr/m/n/10 new("BunchKaufman", ...)[]\T1/ptm/m/n/10 , etc, or rather by c
alls of the form [][][]\T1/pcr/m/n/10 chol[][][](pm) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 1783) in paragraph at lines 1587--1591
[]\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1
/ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend
Underfull \hbox (badness 1221) in paragraph at lines 1603--1609
\T1/ptm/m/n/10 ply an $\OML/cmm/m/it/10 n \OMS/cmsy/m/n/10 ^^B \OML/cmm/m/it/10
 n$ \T1/ptm/m/n/10 nu-meric [][][]\T1/pcr/m/n/10 matrix[][][][]\T1/ptm/m/n/10 .
 Hence, for com-pat-i-bil-ity, the []\T1/pcr/m/n/10 "Cholesky" []\T1/ptm/m/n/10
 and
[2360]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col
Sums}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1644 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.1644 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.1645 \aliasA{colMeans}{colSums}{colMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.1658 \aliasA{rowMeans}{colSums}{rowMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1665 \aliasA{rowSums}{colSums}{rowSums}
                                          [2361]
Underfull \hbox (badness 2922) in paragraph at lines 1715--1719
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sparse, i.e., i
n-her-it-ing from
Underfull \hbox (badness 1728) in paragraph at lines 1715--1719
\T1/ptm/m/n/10 class [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/n/10 . 
Only ap-pli-ca-ble when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is in-her-it-ing fr
om a
Underfull \hbox (badness 1237) in paragraph at lines 1726--1729
[][][]\T1/pcr/m/n/10 dimnames[][][](x) []\T1/ptm/m/n/10 are only kept (as [][][
]\T1/pcr/m/n/10 names[][][](v)[]\T1/ptm/m/n/10 ) when the re-sult-ing []\T1/pcr
/m/n/10 v []\T1/ptm/m/n/10 is [][][]\T1/pcr/m/n/10 numeric[][][][]\T1/ptm/m/n/1
0 , since
[2362] [2363]
Underfull \hbox (badness 3547) in paragraph at lines 1880--1883
[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2364] [2365] [2366] [2367] [2368]
Underfull \hbox (badness 7379) in paragraph at lines 2383--2385
[]\T1/pcr/m/n/10 signature(x = "dgCMatrix")[]\T1/ptm/m/n/10 : com-putes the LU 
de-com-po-si-tion of a square
[2369] [2370] [2371]
Underfull \hbox (badness 4846) in paragraph at lines 2608--2612
[]\T1/ptm/m/n/10 Note that both []\T1/pcr/m/n/10 new(.) []\T1/ptm/m/n/10 and []
[][]\T1/pcr/m/n/10 spMatrix[][][] []\T1/ptm/m/n/10 con-struc-tors for []\T1/pcr
/m/n/10 "dgTMatrix" []\T1/ptm/m/n/10 (and other
Underfull \hbox (badness 2717) in paragraph at lines 2613--2617
[]\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in
 more than one pos-si-ble
Underfull \hbox (badness 10000) in paragraph at lines 2620--2623
[]\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 dgCMatrix[][][] []\T1/ptm/m/n/10 or
 the su-per-classes [][][]\T1/pcr/m/n/10 dsparseMatrix[][][] []\T1/ptm/m/n/10 a
nd [][][]\T1/pcr/m/n/10 TsparseMatrix[][][][]\T1/ptm/m/n/10 ;
[2372]
Underfull \hbox (badness 5231) in paragraph at lines 2657--2662
[]\T1/ptm/m/n/10 Construct a for-mally di-ag-o-nal [][][]\T1/pcr/m/n/10 Matrix[
][][][]\T1/ptm/m/n/10 , i.e., an ob-ject in-her-it-ing from vir-tual class
Overfull \hbox (84.78088pt too wide) in paragraph at lines 2668--2668
 []\T1/pcr/m/n/10 .sparseDiagonal(n, x = NULL, uplo = "U", shape = "t", unitri 
= TRUE, kind, cols)[] 
[2373]
Underfull \hbox (badness 10000) in paragraph at lines 2724--2727
[]\T1/pcr/m/n/10 .trDiagonal() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 .symDiagon
al() []\T1/ptm/m/n/10 are sim-ple wrap-pers, for
Underfull \hbox (badness 6792) in paragraph at lines 2724--2727
[]\T1/pcr/m/n/10 .sparseDiagonal(shape = "t") []\T1/ptm/m/n/10 and []\T1/pcr/m/
n/10 .sparseDiagonal(shape = "s")[]\T1/ptm/m/n/10 , re-spec-
[2374]
Underfull \hbox (badness 3646) in paragraph at lines 2821--2824
[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 dimnames[][][][]\T1/ptm/m/n/10 , a []
[][]\T1/pcr/m/n/10 list[][][][]\T1/ptm/m/n/10 , see the [][][]\T1/pcr/m/n/10 Ma
trix[][][] []\T1/ptm/m/n/10 class de-scrip-tion. Typ-i-cally
Underfull \hbox (badness 6542) in paragraph at lines 2856--2860
[]\T1/pcr/m/n/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these gr
oup meth-ods re-turn a
Underfull \hbox (badness 4518) in paragraph at lines 2865--2871
[]\T1/pcr/m/n/10 signature(e1 = "ddiMatrix", e2="denseMatrix")[]\T1/ptm/m/n/10 
: the re-sult is from class
[2375]
Underfull \hbox (badness 10000) in paragraph at lines 2872--2876
[]\T1/pcr/m/n/10 (object = "diagonalMatrix")[]\T1/ptm/m/n/10 : Re-turns an ob-j
ect of S3 class
Underfull \hbox (badness 2318) in paragraph at lines 2882--2886
[][][]\T1/pcr/m/n/10 Diagonal[][][]() []\T1/ptm/m/n/10 as con-struc-tor of thes
e ma-tri-ces, and [][][]\T1/pcr/m/n/10 isDiagonal[][][][]\T1/ptm/m/n/10 . [][][
]\T1/pcr/m/n/10 ddiMatrix[][][] []\T1/ptm/m/n/10 and
[2376] [2377] [2378]
Underfull \hbox (badness 10000) in paragraph at lines 3136--3138
[]\T1/pcr/m/n/10 signature(x = "dMatrix", digits = "numeric")[]\T1/ptm/m/n/10 :
 this group con-tains
[2379] [2380]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 3276--3276
 []\T1/pcr/m/n/9 stopifnot(all.equal(S9p0, S9p))# same as as default, but diffe
rent from the random one[] 
[2381]
Underfull \hbox (badness 2469) in paragraph at lines 3386--3389
[]\T1/pcr/m/n/10 signature(x = "dpoMatrix")[]\T1/ptm/m/n/10 : Re-turns the [][]
[]\T1/pcr/m/n/10 determinant[][][] []\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 x[]\T1/
ptm/m/n/10 , via
[2382]
Underfull \hbox (badness 10000) in paragraph at lines 3409--3414
[]\T1/ptm/m/n/10 Currently the va-lid-ity meth-ods for these classes such as
Underfull \hbox (badness 2020) in paragraph at lines 3409--3414
[][][]\T1/pcr/m/n/10 getValidity[][][](getClass("dpoMatrix")) []\T1/ptm/m/n/10 
for ef-fi-ciency rea-sons only check the di-
Underfull \hbox (badness 1748) in paragraph at lines 3415--3424
\T1/pcr/m/n/10 error=identity), "error") []\T1/ptm/m/n/10 . In-deed, when \T1/p
tm/m/it/10 co-erc-ing \T1/ptm/m/n/10 to these classes, a ver-sion
Underfull \hbox (badness 1590) in paragraph at lines 3415--3424
\T1/ptm/m/n/10 of [][][]\T1/pcr/m/n/10 Cholesky[][][]() []\T1/ptm/m/n/10 or [][
][]\T1/pcr/m/n/10 chol[][][]() []\T1/ptm/m/n/10 is typ-i-cally used, e.g., see 
[]\T1/pcr/m/n/10 selectMethod("coerce",
[2383]
Underfull \hbox (badness 10000) in paragraph at lines 3541--3545
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsCMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 2103) in paragraph at lines 3541--3545
[]\T1/pcr/m/n/10 new("dsTMatrix", ...)[]\T1/ptm/m/n/10 , or au-to-mat-i-cally v
ia e.g., []\T1/pcr/m/n/10 as(*, "symmetricMatrix")[]\T1/ptm/m/n/10 ,
[2384]
Underfull \hbox (badness 1571) in paragraph at lines 3591--3594
[]\T1/pcr/m/n/10 signature(x = "dsCMatrix", pivot = "logical")[]\T1/ptm/m/n/10 
: Re-turns (and stores) the
[2385] [2386]
Underfull \hbox (badness 10000) in paragraph at lines 3739--3744
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "dMatrix"[]\T1/ptm/m/n/10 , by class []
\T1/pcr/m/n/10 "dsparseMatrix"[]\T1/ptm/m/n/10 , class []\T1/pcr/m/n/10 "sparse
Matrix"[]\T1/ptm/m/n/10 , by
Underfull \hbox (badness 6961) in paragraph at lines 3739--3744
\T1/ptm/m/n/10 class []\T1/pcr/m/n/10 "dsparseMatrix" []\T1/ptm/m/n/10 or []\T1
/pcr/m/n/10 "RsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/pcr/m/n/10 "compMatri
x" []\T1/ptm/m/n/10 by class
Underfull \hbox (badness 1400) in paragraph at lines 3751--3754
[]\T1/pcr/m/n/10 signature(x = "dsRMatrix", uplo = "character")[]\T1/ptm/m/n/10
 : if []\T1/pcr/m/n/10 uplo ==
[2387]
Underfull \hbox (badness 10000) in paragraph at lines 3802--3804
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsyMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 1365) in paragraph at lines 3838--3841
[]\T1/pcr/m/n/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/10
 , or []\T1/pcr/m/n/10 x = "dsyMatrix"
[2388]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3883--3883
 []\T1/pcr/m/n/9 stopifnot(all(S1 == S2)) # equal "seen as matrix", but differ 
internally :[] 
[2389] [2390]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3989--3989
 []\T1/pcr/m/n/9 U5 <- new("dtCMatrix", i= c(1L, 0:3), p=c(0L,0L,0:2, 5L), Dim 
= c(5L, 5L),[] 
Underfull \hbox (badness 3635) in paragraph at lines 4043--4047
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ddenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Cla
ss
Underfull \hbox (badness 10000) in paragraph at lines 4052--4055
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
[2391]
Underfull \hbox (badness 10000) in paragraph at lines 4055--4059
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/n
/10 : the
[2392] [2393]
Underfull \hbox (badness 2065) in paragraph at lines 4224--4228
[]\T1/pcr/m/n/10 signature(a = "dtrMatrix", b = "....")[]\T1/ptm/m/n/10 efficie
ntely use a ``for-ward-solve'' or
[2394] [2395] [2396] [2397]
Overfull \hbox (112.38031pt too wide) in paragraph at lines 4481--4481
 []\T1/pcr/m/n/9 str(jgl009 <- ## https://math.nist.gov/MatrixMarket/data/Harwe
ll-Boeing/counterx/counterx.html[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 4488--4488
 [] \T1/pcr/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB
/Boeing/msc00726.tar.gz"))))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4492--4492
 []\T1/pcr/m/n/9 ## Store as MatrixMarket (".mtx") file, here inside temporary 
dir./folder:[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4495--4495
 []\T1/pcr/m/n/9 file.info(MMfile)[,c("size", "ctime")] # (some confirmation of
 the file\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s)[] 
Overfull \hbox (58.38037pt too wide) in paragraph at lines 4505--4505
 []\T1/pcr/m/n/9 ## has columns (i, j, x) -> we can use via do.call() as argume
nts to sparseMatrix():[] 
[2398] [2399] [2400]
Underfull \hbox (badness 2237) in paragraph at lines 4683--4688
[]\T1/ptm/m/n/10 a string ([]\T1/pcr/m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "R"[]\T1/ptm/m/n/10 , or []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 ) spec-i-fy-i
ng the stor-age of the re-sult as
Underfull \hbox (badness 10000) in paragraph at lines 4701--4703
[]\T1/ptm/m/n/10 a string, one of []\T1/pcr/m/n/10 "trace", "sumLog", "prod", "
min", "max",
[2401] [2402] [2403] [2404]
Underfull \hbox (badness 10000) in paragraph at lines 5033--5038
[]\T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 compMatrix[][][][]\T1/ptm/m/n/10 
, and the non-general vir-tual classes: [][][]\T1/pcr/m/n/10 symmetricMatrix[][
][][]\T1/ptm/m/n/10 ,
[2405]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5114--5114
 []\T1/pcr/m/n/9 if(isTRUE(try(require(graph)))) { ## super careful .. for "che
cking reasons" 
[2406]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5116--5116
 []  \T1/pcr/m/n/9 show(a1 <- sparseMatrix(i= c(1:4),   j=c(2:4,1),   x = 2,   
 dimnames=dns))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5120--5120
 []  \T1/pcr/m/n/9 show(a2 <- sparseMatrix(i= c(1:4,4), j=c(2:4,1:2), x = TRUE,
 dimnames=dns))[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 5127--5127
 []  \T1/pcr/m/n/9 a. <- sparseMatrix(i= 4:1, j=1:4, dimnames=list(n4,n4), give
C=FALSE) # no \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 x\TS1/pcr/m/n/9 '[] 
[2407] [2408]
Underfull \hbox (badness 4120) in paragraph at lines 5266--5269
[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
][]\T1/pcr/m/n/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use
Overfull \hbox (47.58038pt too wide) in paragraph at lines 5284--5284
 []\T1/pcr/m/n/9 stopifnot(!is.null(leg <- imgC$legend), is.list(leg$right)) # 
failed for 2 days ..[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5304--5304
 []\T1/pcr/m/n/9 ## Using (xlim,ylim) has advantage : matrix dimension and (col
/row) indices:[] 
[2409]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 5310--5310
 [] \T1/pcr/m/n/9 I2 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE,    
    border.col=NA)[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 5311--5311
 [] \T1/pcr/m/n/9 I3 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd
=2, border.col=NA)[] 
Overfull \hbox (144.78027pt too wide) in paragraph at lines 5315--5315
 []\T1/pcr/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor
der.col = adjustcolor("skyblue", 1/2))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5323--5323
 []\T1/pcr/m/n/9 image(USCounties, useRaster = TRUE) # should not suffer from a
nti-aliasing[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 5326--5326
 []   \T1/pcr/m/n/9 ## and now look at the *.png image in a viewer you can easi
ly zoom in and out[] 
[2410]
Underfull \hbox (badness 1817) in paragraph at lines 5420--5429
[]\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o
r \T1/ptm/m/n/10 us-ing []\T1/pcr/m/n/10 drop=FALSE[]\T1/ptm/m/n/10 ) stays wit
hin the
Underfull \hbox (badness 10000) in paragraph at lines 5462--5464
[]\T1/pcr/m/n/10 signature(x = "matrix", y = "indMatrix") []\T1/ptm/m/n/10 and 
other sig-na-tures (use
Underfull \hbox (badness 7081) in paragraph at lines 5464--5467
[]\T1/pcr/m/n/10 signature(from = "integer", to = "indMatrix")[]\T1/ptm/m/n/10 
: This en-ables typ-i-cal
[2411]
Underfull \hbox (badness 4556) in paragraph at lines 5470--5477
[]\T1/pcr/m/n/10 signature(from = "list", to = "indMatrix")[]\T1/ptm/m/n/10 : T
he list must have two
Underfull \hbox (badness 3302) in paragraph at lines 5488--5491
[]\T1/pcr/m/n/10 signature(X = "indMatrix", Y = "indMatrix")[]\T1/ptm/m/n/10 : 
re-turn the kro-necker
[2412] [2413] [2414] [2415]
Overfull \hbox (138.78088pt too wide) in paragraph at lines 5872--5872
 []\T1/pcr/m/n/10 isSymmetric(object, tol = 100 * .Machine$double.eps, tol1 = 8
 * tol, checkDN = TRUE, ...)[] 
[2416]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 5878--5878
 []\T1/pcr/m/n/10 isSymmetric(object, tol = 100 * .Machine$double.eps, checkDN 
= TRUE, ...)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5937--5937
 []\T1/pcr/m/n/9 isSymmetric(as(M, "generalMatrix")) # still symmetric, even if
 not "formally"[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5941--5941
 []\T1/pcr/m/n/9 showMethods("isSymmetric", includeDefs = TRUE) # includes S3 g
eneric from base[] 
[2417]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 6033--6033
 []\T1/pcr/m/n/9 isTriangular(as(M, "generalMatrix")) # still triangular, even 
if not "formally"[] 
[2418]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 6058--6058
 []\T1/pcr/m/n/10 KhatriRao(X, Y = X, FUN = "*", sparseY = TRUE, make.dimnames 
= FALSE) 
[2419]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6138--6138
 []\T1/pcr/m/n/9 stopifnot(all(K1 <- KhatriRao(nd, zm) == 0), identical(dim(K1)
, c(12L, 4L)),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6139--6139
 []          \T1/pcr/m/n/9 all(K2 <- KhatriRao(zm, nd) == 0), identical(dim(K2)
, c(12L, 4L)))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6146--6146
 []  \T1/pcr/m/n/9 identical(dimnames(KhatriRao(m, d0, make.dimnames=TRUE)), di
mnames(Kmd)))[] 
[2420] [2421]
Underfull \hbox (badness 1062) in paragraph at lines 6307--6310
[]\T1/pcr/m/n/10 ldenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
[2422]
Underfull \hbox (badness 6063) in paragraph at lines 6333--6336
[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2423]
Underfull \hbox (badness 2635) in paragraph at lines 6478--6483
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ldenseMatrix"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 4229) in paragraph at lines 6478--6483
\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 6486--6489
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2424]
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[]\T1/pcr/m/n/10 lsTMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltTMatrix[]\T
1/ptm/m/n/10 ) or in com-pressed column-oriented form (class
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[][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pc
r/m/n/10 lgCMatrix[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lsCMatrix[]\T1/ptm/m/n/10
 , and []\T1/pcr/m/n/10 ltCMatrix[]\T1/ptm/m/n/10 ) or--\T1/ptm/m/it/10 rarely\
T1/ptm/m/n/10 --in
[2425]
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[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2426]
Underfull \hbox (badness 10000) in paragraph at lines 6720--6723
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2427]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2428]
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\T1/ptm/m/n/10 should be sig-nalled when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is
 sin-gu-lar. When []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is sin-gu-lar, []\T1/pcr/
m/n/10 lu(x,
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[]\T1/pcr/m/n/10 lu() []\T1/ptm/m/n/10 is a generic func-tion with spe-cial met
h-ods for dif-fer-ent types of ma-tri-ces. Use
[2429]
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 []                                \T1/pcr/m/n/9 # q is a 0-based permutation o
f the columns[] 
[2430] [2431]
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[]\T1/ptm/m/n/10 vector of all non-zero en-tries of []\T1/pcr/m/n/10 x[]\T1/ptm
/m/n/10 ; ex-ists \T1/ptm/b/n/10 only \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 as(x
,
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[]\T1/pcr/m/n/10 mat2triplet() []\T1/ptm/m/n/10 is con-cep-tu-ally the \T1/ptm/
m/it/10 in-verse \T1/ptm/m/n/10 func-tion of [][][]\T1/pcr/m/n/10 spMatrix[][][
] []\T1/ptm/m/n/10 and (one case of)
[2432] [2433] [2434]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.det}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7305 \aliasA{det}{Matrix-class}{det}
                                      
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[]\T1/pcr/m/n/10 signature(x = "Matrix", value = "list")[]\T1/ptm/m/n/10 : set 
the []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 to a
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[2435]
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[]\T1/pcr/m/n/10 signature(from = "ANY", to = "Matrix")[]\T1/ptm/m/n/10 : This 
re-lies on a cor-rect
[2436]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp
cent.*.Rpcent.}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7478 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.crossprod}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.7575 ...A{crossprod}{matrix-products}{crossprod}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.7676 ...tcrossprod}{matrix-products}{tcrossprod}
                                                  
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\T1/ptm/m/n/10 ally im-ple-mented ef-fi-ciently with-out com-put-ing [][][]\T1/
pcr/m/n/10 t[][][](.)[]\T1/ptm/m/n/10 's un-nec-es-sar-ily. They also re-turn
[2437]
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[]\T1/pcr/m/n/10 signature(x = "dgeMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
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[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-tures (use
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[]\T1/pcr/m/n/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-tr
ix mul-ti-pli-ca-tion. Mul-ti-
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\T1/ptm/m/n/10 sig-na-tures, use []\T1/pcr/m/n/10 showMethods("crossprod", clas
s = "dgeMatrix")[]\T1/ptm/m/n/10 , ma-trix
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[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-
[2438] [2439]
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[]\T1/pcr/m/n/10 ndenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
[2440]
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[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2441]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/pcr/m/n/10 X <- (X + t(X))/2 []
\T1/ptm/m/n/10 should be done, af-ter []\T1/pcr/m/n/10 X <-
[2442] [2443]
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 []   \T1/pcr/m/n/9 all.equal(n.A.m, unname(as.matrix(n.A$mat)), tolerance = 1e
-15)# seen rel.d.= 1.46e-16[] 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(ncr, ncF))# norm type does not matter at a
ll in this example[] 
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[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ndenseMatrix"[]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 8337--8340
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2445]
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[]\T1/pcr/m/n/10 signature(from = "matrix", to = "nMatrix")[]\T1/ptm/m/n/10 : N
ote that these co-er-cions
[2446]
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[]\T1/ptm/m/n/10 fast sim-
[2447]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor
m}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8557 \HeaderA{norm}{Matrix Norms}{norm}
                                         pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.8557 \HeaderA{norm}{Matrix Norms}{norm}
                                          [2448]
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 []\T1/pcr/m/n/9 A <- sparseMatrix(i, j, x = x)                      ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
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 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
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[]\T1/ptm/m/n/10 These can be stored in the ``triplet'' form ([][][]\T1/pcr/m/n
/10 TsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pcr/m/n/10 ngTMatri
x[]\T1/ptm/m/n/10 ,
[2449]
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[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2450]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2451]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2452] [2453]
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "missing", dr
op =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "missing", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "missing", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "missing", dro
p =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "missing", dr
op =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "NULL", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "NULL", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "index", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "index", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "index", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "index", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "index", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "missing", dr
op =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "missing", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "missing", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "missing", dro
p =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "missing", dr
op =
[2454]
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "NULL", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "NULL", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "index", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "index", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "index", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "index", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "index", drop
 =
[2455]
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[]\T1/pcr/m/n/10 signature(x = "matrix", y = "pMatrix") []\T1/ptm/m/n/10 and ot
her sig-na-tures (use
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[]\T1/pcr/m/n/10 signature(from = "integer", to = "pMatrix")[]\T1/ptm/m/n/10 : 
This is en-ables typ-i-cal
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[]\T1/pcr/m/n/10 signature(x = "pMatrix", logarithm="logical")[]\T1/ptm/m/n/10 
: Since per-mu-ta-
Underfull \hbox (badness 3229) in paragraph at lines 9149--9153
\T1/ptm/m/n/10 trix; note that []\T1/pcr/m/n/10 solve(P) []\T1/ptm/m/n/10 is id
en-ti-cal to []\T1/pcr/m/n/10 t(P) []\T1/ptm/m/n/10 for per-mu-ta-tion ma-tri-c
es. See
[2456] [2457]
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 []               \T1/pcr/m/n/10 col.names, note.dropping.colnames = TRUE, uniD
iag = TRUE,[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 9231--9231
 []\T1/pcr/m/n/10 printSpMatrix(x, digits = NULL, maxp = max(100L, getOption("m
ax.print")),[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 9233--9233
 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 9237--9237
 []\T1/pcr/m/n/10 printSpMatrix2(x, digits = NULL, maxp = max(100L, getOption("
max.print")),[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 9238--9238
 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
Underfull \hbox (badness 3989) in paragraph at lines 9263--9273
[]\T1/ptm/m/n/10 logical or string spec-i-fy-ing if and how col-umn names of []
\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 should
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\T1/ptm/m/n/10 be printed, pos-si-bly ab-bre-vi-ated. The de-fault is taken fro
m
[2458] [2459]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.qr}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9364 \aliasA{qr}{qr-methods}{qr}
                                   [2460]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 9436--9436
 []\T1/pcr/m/n/9 stopifnot(identical(dimnames(X), dnX))# some versions changed 
X\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s dimnames![] 
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 []\T1/pcr/m/n/9 qxrLA <- qr(m(Xr), LAPACK=TRUE) # => qr.fitted(), qr.resid() n
ot supported[] 
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 []\T1/pcr/m/n/9 ##----- rank-deficient ("singular") case ---------------------
---------------[] 
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 []\T1/pcr/m/n/9 (X. <- drop0(Q. %*% R.[, qI], tol=tolE))## just = X, incl. cor
rect colnames[] 
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[]\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/pcr/m/n/10 
qr[][][](x, tol,
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[]\T1/ptm/m/n/10 is for back com-pat-i-bil-ity; for dense []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 , it cor-re-sponds to
[2462] [2463]
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 []\T1/pcr/m/n/9 ## The meaning of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 tol\TS1/pcr/m/
n/9 ' \T1/pcr/m/n/9 for method="qrLINPACK" and *dense* x is not entirely "scale
 free"[] 
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 []\T1/pcr/m/n/9 sapply(meths, function(.m.) rankMatrix(M15, method = .m., tol 
= 1e-7)) # all 14[] 
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 []\T1/pcr/m/n/9 (st1 <- system.time(r1 <- rankMatrix(L)))                # war
ning+ ~1.5 sec (2013)[] 
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 []\T1/pcr/m/n/9 (st2 <- system.time(r2 <- rankMatrix(L, method = "qr"))) # con
siderably faster![] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9688 ... the Reciprocal Condition Number}{rcond}
                                                   [2464] [2465]
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 []\T1/pcr/m/n/9 rcond(x2 <- cbind(x1, 2:11))# practically 0, since x2 does not
 have full rank[] 
[2466] [2467] [2468]
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\T1/ptm/m/n/10 dices, if not []\T1/pcr/m/n/10 symmetric [][]sample.int[][][](nr
ow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/pcr/m/n/10 rand.x []\T1/ptm/m/n
/10 is not
[2469] [2470]
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[]\T1/ptm/m/n/10 numeric square Ma-trix (in-her-it-ing from class []\T1/pcr/m/n
/10 "Matrix"[]\T1/ptm/m/n/10 ) or tra-di-tional
[2471]
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 []                           \T1/pcr/m/n/9 z[order(Mod(z), decreasing=TRUE)]})
, tolerance = 1e-13),[] 
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 []\T1/pcr/m/n/9 ## For the faint of heart, we provide Schur() also for traditi
onal matrices:[] 
[2472]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sol
ve}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10265 \aliasA{solve}{solve-methods}{solve}
                                            
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 []\T1/pcr/m/n/10 ## solve(a, b, ...) # the two-argument version, almost always
 preferred to 
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 []\T1/pcr/m/n/10 solve(a, b, system = c("A", "LDLt", "LD", "DLt", "L", "Lt", "
D", "P", "Pt"), ...)[] 
[2473]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 solve []\T1/ptm/m/n/10 meth-ods for a
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[]\T1/ptm/m/n/10 (for all []\T1/pcr/m/n/10 b[]\T1/ptm/m/n/10 ) work via []\T1/p
cr/m/n/10 as(a,
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list []\T1/pcr/m/n/10 (
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list []\T1/pcr/m/n/10 (
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\T1/pcr/m/n/10 sparse=FALSE, tol = .Machine$double.eps ) []\T1/ptm/m/n/10 : Che
cks if []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 is sym-met-ric,
[2474]
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[]\T1/ptm/m/n/10 All these meth-ods first try Cholmod's
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[]\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines
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[]\T1/ptm/m/n/10 works via []\T1/pcr/m/n/10 as(b,
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[]\T1/ptm/m/n/10 these meth-ods typ-i-cally use
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[]\T1/ptm/m/n/10 all work via []\T1/pcr/m/n/10 as(a,
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[][][]\T1/pcr/m/n/10 solve[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lu[][][
][]\T1/ptm/m/n/10 , and class doc-u-men-ta-tions [][][]\T1/pcr/m/n/10 CHMfactor
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 sparseLU[][][][]\T1/ptm/m/n/10 , 
and
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 []\T1/pcr/m/n/9 image(ia0 <- solve(a)) # checker board, dense [but really, a i
s singular!][] 
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 []  \T1/pcr/m/n/9 ## Fails on 32-bit [Fedora 19, R 3.0.2] from Matrix 1.1-0 on
 [FIXME ??] only[] 
[2475]
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[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu
la and data frame
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 []   \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs
parse)[] 
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 []   \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs
parse,[] 
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[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
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[]\T1/ptm/m/n/10 character string or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or 
(co-er-ca-ble to)
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[]\T1/pcr/m/n/10 "[][]sparseMatrix[][][]"[]\T1/ptm/m/n/10 , spec-i-fy-ing the c
on-trasts to be ap-plied to the
[2476]
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[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
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[]\T1/pcr/m/n/10 sparse.model.matrix []\T1/ptm/m/n/10 has been changed to []\T1
/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , 2010-07, for
Underfull \hbox (badness 1668) in paragraph at lines 10634--10639
[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
[2477]
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0, 0),[] 
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop=FALSE),"CsparseMatrix"), dim(M)
 == c(3, 0),[] 
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f12, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0,12),[] 
[2478]
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 []\T1/pcr/m/n/9 stopifnot(all.equal(pA, pLU, tolerance = 1e-12)) # (incl. perm
uted row- and column-names)[] 
[2479]
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[]\T1/ptm/m/n/10 This in-ter-face is rec-om-mended over di-rect con-struc-tion 
via calls such as
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 []             \T1/pcr/m/n/10 symmetric = FALSE, triangular = FALSE, index1 = 
TRUE,[] 
[2480]
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\T1/ptm/m/n/10 of the sparse ma-trix re-sult, i.e., spec-i-fy-ing one of the vi
r-tual classes
[2481]
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[]\T1/ptm/m/n/10 The stan-dard \T1/phv/m/n/10 R [][][]\T1/pcr/m/n/10 xtabs[][][
](*, sparse=TRUE)[]\T1/ptm/m/n/10 , for sparse ta-bles and
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 []\T1/pcr/m/n/9 (A <- sparseMatrix(i, j, x = x))                    ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
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 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
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 []\T1/pcr/m/n/9 (AA <- sparseMatrix(c(1,3:8), c(2,9,6:10), x = 7 * (1:7), dims
 = c(10,20)))[] 
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 []\T1/pcr/m/n/9 ## i, j and x can be in an arbitrary order, as long as they ar
e consistent[] 
[2482]
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 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted
 if necessary:[] 
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 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 
1:6, dimnames = dn)[] 
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 []\T1/pcr/m/n/9 ## pointers example in converting from other sparse matrix rep
resentations.[] 
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 []   \T1/pcr/m/n/9 nzchar(dfil <- system.file("extdata", "rua_32_ax.rua", pack
age = "SparseM"))) {[] 
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 []  \T1/pcr/m/n/9 XX <- sparseMatrix(j = X@ja, p = X@ia - 1L, x = X@ra, dims =
 X@dimension)[] 
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Underfull \hbox (badness 6842) in paragraph at lines 11207--11210
[]\T1/pcr/m/n/10 (x = "sparseMatrix", logarithm=TRUE)[]\T1/ptm/m/n/10 : [][][]\
T1/pcr/m/n/10 determinant[][][]() []\T1/ptm/m/n/10 meth-ods
[2484]
Underfull \hbox (badness 10000) in paragraph at lines 11242--11246
[][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/10 , and its ref-er-ences,
 such as [][][]\T1/pcr/m/n/10 xtabs[][][](*, sparse=TRUE)[]\T1/ptm/m/n/10 , or
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr.Q}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11282 \aliasA{qr.Q}{sparseQR-class}{qr.Q}
                                            [2485] [2486]
Underfull \hbox (badness 10000) in paragraph at lines 11411--11413
[]\T1/pcr/m/n/10 signature(a = "sparseQR", b = "ANY")[]\T1/ptm/m/n/10 : For []\
T1/pcr/m/n/10 solve(a,b)[]\T1/ptm/m/n/10 , sim-ply uses
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 [] \T1/pcr/m/n/9 qc  <- qr.coef  (qrm, y); qc. <- qr.coef  (qrm, y.) # 2nd fai
led in Matrix <= 1.1-0[] 
[2487]
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[]\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case
 a
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[]\T1/ptm/m/n/10 Sparse Vec-tor Classes: The vir-tual mother class []\T1/pcr/m/
n/10 "sparseVector" []\T1/ptm/m/n/10 has the five ac-
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\T1/ptm/m/n/10 tual daugh-ter classes []\T1/pcr/m/n/10 "dsparseVector"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "isparseVector"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "
lsparseVector"[]\T1/ptm/m/n/10 ,
[2488]
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[]\T1/pcr/m/n/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m/
n/10 co-erces sparse
[2489]
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[]\T1/pcr/m/n/10 (x = "nsparseVector")[]\T1/ptm/m/n/10 : re-turn [][][]\T1/pcr/
m/n/10 logical[][][] []\T1/ptm/m/n/10 or
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[][][]\T1/pcr/m/n/10 sparseVector[][][]() []\T1/ptm/m/n/10 for friendly con-str
uc-tion of sparse vec-tors (apart from []\T1/pcr/m/n/10 as(*,
[2490] [2491]
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[][][]\T1/pcr/m/n/10 Matrix[][][](*, sparse=TRUE) []\T1/ptm/m/n/10 for the more
 usual con-struc-tor of such ma-tri-ces. Then,
[2492] [2493]
Underfull \hbox (badness 2591) in paragraph at lines 11923--11928
\T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 triangularMatrix[][][][]\T1/ptm/m/n
/10 , and, e.g., [][][]\T1/pcr/m/n/10 dsyMatrix[][][] []\T1/ptm/m/n/10 for nu-m
eric \T1/ptm/m/it/10 dense \T1/ptm/m/n/10 ma-tri-ces, or
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[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
[2494] [2495]
Underfull \hbox (badness 6641) in paragraph at lines 12086--12089
[]\T1/ptm/m/n/10 Currently, [][][]\T1/pcr/m/n/10 Schur[][][][]\T1/ptm/m/n/10 , 
[][][]\T1/pcr/m/n/10 isSymmetric[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 as
() []\T1/ptm/m/n/10 (i.e. [][][]\T1/pcr/m/n/10 coerce[][][][]\T1/ptm/m/n/10 ) h
ave meth-ods with
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 "TsparseMatrix" []\T1/ptm/m/n/10 class is
 the vir-tual class of all sparse ma-tri-ces coded in
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\T1/ptm/m/n/10 triplet form. Since it is a vir-tual class, no ob-jects may be c
re-ated from it. See
[2496] [2497]
Underfull \hbox (badness 7649) in paragraph at lines 12238--12240
[]\T1/ptm/m/n/10 a sparse ma-trix stored in triplet form, i.e., in-her-it-ing f
rom class
[2498] [2499]
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[]\T1/ptm/m/n/10 typically a []\T1/pcr/m/n/10 "packedMatrix"[]\T1/ptm/m/n/10 , 
though
[2500]
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[][][]\T1/pcr/m/n/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 unpac
k[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/pcr/m/n/10 "[][]pac
kedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes
[2501]
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[]\T1/ptm/m/n/10 any \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject, co-er-ca-ble to a
 sparse ma-trix (i.e., of sub-class of
[2502]
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 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted
 if necessary:[] 
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 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 
1:6, dimnames = dn)[] 
[2503] [2504]
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 []   \T1/pcr/m/n/9 sapply(rho, function(x) c(2* determinant(update(C1, nWC, 1/
x))$modulus))[] 
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 []   \T1/pcr/m/n/9 sapply(rho, function(x) c(2* determinant(update(C2, nWC, 1/
x))$modulus))[] 
[2505]
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[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2506]
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12987.
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(hyperref)                removing `\Rpercent' on input line 12987.
[2507]
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 []\T1/pcr/m/n/9 L. <- L; L.[1:2,1] <- TRUE; L.@x[1:2] <- FALSE; L. # has "zero
s" to drop0()[] 
[2508]) (./boot-pkg.tex
Chapter 18.
[2509] [2510] [2511] [2512] [2513] [2514] [2515]
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 []\T1/pcr/m/n/10 boot(data, statistic, R, sim = "ordinary", stype = c("i", "f"
, "w"), 
[2516]
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[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sim-u-la-tion r
e-quired. Pos-si-ble
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor or fac-tor spec-i-fy-ing the strata for m
ulti-sample prob-
[2517] [2518] [2519]
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[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 6493) in paragraph at lines 853--857
[][][]\T1/pcr/m/n/10 boot.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bo
ot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 censboot[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 empinf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 j
ack.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 tilt.boot[][][][]\T
1/ptm/m/n/10 ,
[2520]
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 []\T1/pcr/m/n/9 nuke.lm <- glm(log(cost) ~ date+log(cap)+ne+ct+log(cum.n)+pt, 
data = nuke)[] 
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[2522] [2523]
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[]\T1/ptm/m/n/10 If sup-plied, a value to be used as an es-ti-mate of the vari-
ance of the
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\T1/ptm/m/n/10 statis-tic for the nor-mal ap-prox-i-ma-tion and stu-den-tized i
n-ter-vals. If it
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\T1/ptm/m/n/10 is not sup-plied and []\T1/pcr/m/n/10 length(index) []\T1/ptm/m/
n/10 is 2 then []\T1/pcr/m/n/10 var.t0 []\T1/ptm/m/n/10 de-faults to
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[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2524] [2525] [2526] [2527]
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[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2528] [2529] [2530] [2531] [2532]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1738--1738
 []\T1/pcr/m/n/10 censboot(data, statistic, R, F.surv, G.surv, strata = matrix(
1,n,2), 
[2533] [2534] [2535]
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 []\T1/pcr/m/n/9 mel.cox <- coxph(Surv(time, status == 1) ~ ns(thickness, df=4)
 + strata(ulcer),[] 
[2537]
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[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2538] [2539] [2540]
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[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2541]
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\T1/ptm/m/n/10 are passed un-changed ev-ery time []\T1/pcr/m/n/10 boot.out$stat
istic []\T1/ptm/m/n/10 is called.
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[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
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[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 empinf[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 k3.linear[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 linear.approx[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
saddle.distn[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.spline[][][][]
\T1/ptm/m/n/10 ,
[2542] [2543]
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[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/pcr/m
/n/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 n []\T1/ptm/m/n/1
0 is the sam-ple
Underfull \hbox (badness 1112) in paragraph at lines 2536--2540
\T1/ptm/m/n/10 size, if []\T1/pcr/m/n/10 unbiased []\T1/ptm/m/n/10 is []\T1/pcr
/m/n/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/pcr/m/n/10 1/n []\T
1/ptm/m/n/10 is used. This is mul-ti-plied by
[2544] [2545] [2546] [2547] [2548]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2895--2895
 []\T1/pcr/m/n/10 EEF.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t 
= 25, 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2897--2897
 []\T1/pcr/m/n/10 EL.profile(y, tmin  =  min(y) + 0.1, tmax = max(y) - 0.1, n.t
  =  25,[] 
[2549] [2550] [2551]
Underfull \hbox (badness 3861) in paragraph at lines 3105--3108
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.arr
ay[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.ci[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 control[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 jack
.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 linear.approx[][][][]\
T1/ptm/m/n/10 ,
[2552]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 3158--3158
 []\T1/pcr/m/n/10 envelope(boot.out = NULL, mat = NULL, level = 0.95, index = 1
:ncol(mat)) 
[2553] [2554] [2555]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3378--3378
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
[2556] [2557] [2558] [2559] [2560] [2561] [2562]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3838--3838
 []             \T1/pcr/m/n/10 t = boot.out$t[, index], w = NULL, def = TRUE, q
 = NULL)[] 
[2563] [2564]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3977--3977
 []\T1/pcr/m/n/9 grav.p <- imp.prob(grav.tilt.boot, w = grav.w, index = 3, t0 =
 grav.z0[3])[] 
[2565] [2566] [2567] [2568]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4259--4259
 []\T1/pcr/m/n/9 #  To draw the jackknife-after-bootstrap plot for the head siz
e data as in 
[2569] [2570]
Underfull \hbox (badness 10000) in paragraph at lines 4362--4364
[]\T1/ptm/m/n/10 The in-dex of the vari-able of in-ter-est within the out-put o
f
Underfull \hbox (badness 1430) in paragraph at lines 4371--4375
\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is sup-plied but nei-the
r []\T1/pcr/m/n/10 t []\T1/ptm/m/n/10 nor []\T1/pcr/m/n/10 L []\T1/ptm/m/n/10 a
re sup-plied then []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is set to
[2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579]
Underfull \hbox (badness 3000) in paragraph at lines 4959--4962
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2580] [2581] [2582] [2583]
Underfull \hbox (badness 2293) in paragraph at lines 5238--5241
[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5238--5241
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2584]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5317--5317
 []\T1/pcr/m/n/9 grav.boot <- boot(grav1, grav.fun, R = 499, stype = "w", strat
a = grav1[, 2])[] 
[2585] [2586] [2587] [2588] [2589] [2590] [2591] [2592]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5866--5866
 []\T1/pcr/m/n/9 city.sp1$spa[1] <- jacobian(city, 1.25, city.sp1$zeta.hat) * c
ity.sp1$spa[1][] 
[2593]
Underfull \hbox (badness 1127) in paragraph at lines 5988--6006
[]\T1/ptm/m/n/10 etc. un-til a point is found with a cdf ap-prox-i-ma-tion less
 than []\T1/pcr/m/n/10 min(alpha)/10[]\T1/ptm/m/n/10 , then
[2594]
Underfull \hbox (badness 2837) in paragraph at lines 6021--6024
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/pcr/m/n/10 "s
addle.distn"[]\T1/ptm/m/n/10 . See the help file for
[2595] [2596] [2597] [2598]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6306--6306
 []\T1/pcr/m/n/9 # This example is taken from Exercise 7.5 of Gill, Murray and 
Wright (1991). 
[2599] [2600]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6495--6495
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6497--6497
 []\T1/pcr/m/n/9 # value of the test statistic 1.84.  In the book exponential t
ilting was used[] 
[2601] [2602] [2603]
Underfull \hbox (badness 1596) in paragraph at lines 6742--6746
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2604] [2605]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6902--6902
 []                        \T1/pcr/m/n/9 stype = "i", sim = "balanced", alpha =
 c(0.05, 0.95),[] 
[2606] [2607] [2608] [2609] [2610] [2611] [2612] [2613]) (./class-pkg.tex
[2614]
Chapter 19.
[2615] [2616] [2617] [2618] [2619] [2620] [2621] [2622] [2623] [2624] [2625]
[2626] [2627] [2628] [2629] [2630]) (./cluster-pkg.tex
Chapter 20.
[2631] [2632] [2633]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 253--253
 []  \T1/pcr/m/n/9 all.equal(a.wgt [iC], agnes(d.vr, method="flexible", par.met
hod = 0.5)[iC])   ,[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 254--254
 []  \T1/pcr/m/n/9 all.equal(a.sing[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, -.5))[iC]),[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 255--255
 []  \T1/pcr/m/n/9 all.equal(a.comp[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, +.5))[iC]))[] 
[2634] [2635]
Underfull \vbox (badness 10000) has occurred while \output is active [2636]
[2637]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 519--519
 []           \T1/pcr/m/n/10 col = c(2, 0), border = 0, axes = TRUE, frame.plot
 = axes,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 523--523
 []           \T1/pcr/m/n/10 yaxRight = fromLeft, y.mar = 2.4 + max.strlen/2.5,
 ...)[] 
[2638] [2639]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 638--638
 []      \T1/pcr/m/n/10 keep.data = medoids.x, rngR = FALSE, pamLike = FALSE, c
orrect.d = TRUE)[] 
[2640]
Underfull \hbox (badness 3078) in paragraph at lines 691--694
[]\T1/ptm/m/n/10 Setting this to []\T1/pcr/m/n/10 FALSE []\T1/ptm/m/n/10 saves 
mem-ory (and hence time), but dis-ables
[2641] [2642]
Underfull \hbox (badness 2941) in paragraph at lines 791--794
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 clara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\
T1/ptm/m/n/10 ,
[2643]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 834--834
 []\T1/pcr/m/n/9 ## those that are not always in same cluster (5 out of 3000 fo
r this seed):[] 
Underfull \hbox (badness 10000) in paragraph at lines 881--883
[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2644]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 946--946
 []     \T1/pcr/m/n/10 arrowArgs = list(col="red3", length=1/16, angle=90, code
=3), ...)[] 
[2645]
Underfull \hbox (badness 4872) in paragraph at lines 992--994
[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
Underfull \hbox (badness 1342) in paragraph at lines 1006--1010
[]\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in
 2012,
[2646] [2647]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1121--1121
 []        \T1/pcr/m/n/9 sapply(mets, function(M) maxSE(fk, sk, method = M, SE.
factor = SEf)))[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1138--1138
 []\T1/pcr/m/n/9 ## You can manually set it before running this :    doExtras <
- TRUE  # or  FALSE[] 
Underfull \vbox (badness 10000) has occurred while \output is active [2648]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1176--1176
 []\T1/pcr/m/n/9 plot(gsP.Z, main = "clusGap(<iid_rnorm_p=3>)  ==> k = 1  clust
er is optimal")[] 
Underfull \hbox (badness 4144) in paragraph at lines 1208--1212
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 nor a []\T1/pcr/m/n/10 data []\T1/ptm/m/n/10 
com-po-nent, e.g., for
[2649]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1284--1284
 []          \T1/pcr/m/n/10 col.clus = if(color) c(2, 4, 6, 3) else 5, cex = 1,
 cex.txt = cex,[] 
Overfull \hbox (72.78088pt too wide) in paragraph at lines 1290--1290
 []             \T1/pcr/m/n/10 round(100 * var.dec, digits = 2), "% of the poin
t variability."),[] 
[2650] [2651] [2652]
Underfull \hbox (badness 10000) in paragraph at lines 1477--1480
Underfull \hbox (badness 10000) in paragraph at lines 1494--1498
[][][]\T1/pcr/m/n/10 princomp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cmds
cale[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 daisy[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cov.mve[][][
][]\T1/ptm/m/n/10 ,
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1518--1518
 []\T1/pcr/m/n/9 clusplot(pamv, col.p = votes.clus, labels = 4)# color points a
nd label ellipses[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1528--1528
 []  \T1/pcr/m/n/9 clusplot(votes.diss, votes.clus, diss = TRUE, labels = 5)# i
dent. only points[] 
[2653]
Underfull \hbox (badness 5741) in paragraph at lines 1568--1571
[]\T1/pcr/m/n/10 coefHier() []\T1/ptm/m/n/10 di-rectly in-ter-faces to the un-d
er-ly-ing C code, and ``proves'' that \T1/ptm/m/it/10 only
[2654]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1637--1637
 []      \T1/pcr/m/n/10 warnBin = warnType, warnAsym = warnType, warnConst = wa
rnType,[] 
[2655]
Underfull \hbox (badness 1552) in paragraph at lines 1686--1688
[]\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/pcr/m/n
/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , se
e
Underfull \hbox (badness 1629) in paragraph at lines 1699--1703
[]\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault 
\T1/ptm/m/n/10 for all nu-meric
Underfull \hbox (badness 3746) in paragraph at lines 1699--1703
\T1/ptm/m/n/10 (incl []\T1/pcr/m/n/10 integer[]\T1/ptm/m/n/10 ) columns of []\T
1/pcr/m/n/10 x[]\T1/ptm/m/n/10 , aka []\T1/pcr/m/n/10 "I" []\T1/ptm/m/n/10 in r
e-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , see
[2656]
Underfull \hbox (badness 1540) in paragraph at lines 1775--1783
\T1/ptm/m/n/10 In other words, $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 is a weigh
ted mean of $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 with weights $\OML/cmm/m/it/1
0 w[]^^N[]$\T1/ptm/m/n/10 , where $\OML/cmm/m/it/10 w[]$[]\T1/pcr/m/n/10 =
[2657]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1867--1867
 []\T1/pcr/m/n/9 summary(dfl2 <- daisy(flower, type = list(asymm = c(1, 3), ord
ratio = 7)))[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 1886--1886
 []\T1/pcr/m/n/10 diana(x, diss = inherits(x, "dist"), metric = "euclidean", st
and = FALSE, 
[2658] [2659] [2660] [2661] [2662]
Underfull \hbox (badness 10000) in paragraph at lines 2207--2210
Underfull \hbox (badness 3179) in paragraph at lines 2221--2227
[][][]\T1/pcr/m/n/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also the
 [][][]\T1/pcr/m/n/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/pcr/m/n/1
0 ellipsoid []\T1/ptm/m/n/10 ob-jects.
[2663] [2664]
Underfull \hbox (badness 10000) in paragraph at lines 2379--2382
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 fanny.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2665]
Underfull \hbox (badness 1292) in paragraph at lines 2447--2450
[]\T1/ptm/m/n/10 named vec-tor with []\T1/pcr/m/n/10 iterations[]\T1/ptm/m/n/10
 , the num-ber of it-er-a-tions needed and
[2666]
Underfull \hbox (badness 6675) in paragraph at lines 2456--2458
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
Underfull \hbox (badness 10000) in paragraph at lines 2479--2482
[][][]\T1/pcr/m/n/10 fanny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.f
anny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dissimilarity.object[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2667] [2668]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 2608--2608
 []\T1/pcr/m/n/10 medoids(x, clustering, diss = inherits(x, "dist"), USE.NAMES 
= FALSE, ...) 
[2669]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 2655--2655
 []  \T1/pcr/m/n/9 stopifnot(length(cl.k) == nrow(votes.repub), 1 <= cl.k, cl.k
 <= k, table(cl.k) >= 2)[] 
[2670]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2760--2760
 []\T1/pcr/m/n/9 ## One place to see if/how error messages are *translated* (to
 \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 de\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 / \TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 pl\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ):[] 
[2671]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 2839--2839
 []    \T1/pcr/m/n/10 variant = c("original", "o_1", "o_2", "f_3", "f_4", "f_5"
, "faster"),[] 
[2672] [2673] [2674]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3068--3068
 []\T1/pcr/m/n/9 ## no _build_ *and* no _swap_ phase: just cluster all obs. aro
und (1, 16):[] 
[2675] [2676]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3171--3171
 []\T1/pcr/m/n/9 axis(1, k.best, paste("best",k.best,sep="\n"), col = "red", co
l.axis = "red")[] 
[2677] [2678] [2679]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 3367--3367
 []           \T1/pcr/m/n/10 sub = paste("Agglomerative Coefficient = ",round(x
$ac, digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3368--3368
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2680]
Underfull \hbox (badness 10000) in paragraph at lines 3435--3438
[]\T1/ptm/m/n/10 For the den-dro-gram, more flex-i-bil-ity than via []\T1/pcr/m
/n/10 pltree() []\T1/ptm/m/n/10 is pro-vided by []\T1/pcr/m/n/10 dg <-
[2681]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3485--3485
 []           \T1/pcr/m/n/10 sub = paste("Divisive Coefficient = ", round(x$dc,
 digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3486--3486
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2682] [2683] [2684]
Underfull \hbox (badness 10000) in paragraph at lines 3671--3674
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 com-po-nent as for [][][]\T1/pcr/m/n/10 pam[]
[][](*,
Underfull \hbox (badness 1448) in paragraph at lines 3671--3674
\T1/pcr/m/n/10 keep.diss=FALSE)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dist []\T1/p
tm/m/n/10 must be the dis-sim-i-lar-ity if a clus-plot is
[2685]
Underfull \hbox (badness 10000) in paragraph at lines 3734--3739
[][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 clusplot.de
fault[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 ,
[2686]
Underfull \hbox (badness 1748) in paragraph at lines 3796--3801
\T1/ptm/m/n/10 dis-patches to [][][]\T1/pcr/m/n/10 plot.hclust[][][](..)[]\T1/p
tm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/pcr/m/n/10 xx 
<-
Underfull \hbox (badness 6268) in paragraph at lines 3808--3811
[][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 agnes.o
bject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 diana.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/1
0 hclust[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 plot.agnes[][][][]\T1/ptm/m/n/10 ,
[2687] [2688] [2689]
Underfull \hbox (badness 10000) in paragraph at lines 3993--3996
[][][]\T1/pcr/m/n/10 summary.agnes[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ag
nes.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4024--4027
[][][]\T1/pcr/m/n/10 summary.clara[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cl
ara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
[2690]
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 []      \T1/pcr/m/n/10 digits = getOption("digits"), justify = "none", right =
 TRUE, ...)[] 
[2691]
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[]\T1/ptm/m/n/10 a []\T1/pcr/m/n/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a
 []\T1/pcr/m/n/10 summary.dissimilarity []\T1/ptm/m/n/10 one for
[2692] [2693] [2694]
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 []     \T1/pcr/m/n/10 main = NULL, sub = NULL, xlab = expression("Silhouette w
idth "* s[i]),[] 
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 []     \T1/pcr/m/n/10 cex.names = par("cex.axis"), do.n.k = TRUE, do.clus.stat
 = TRUE, ...)[] 
[2695] [2696]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 4426--4426
 []\T1/pcr/m/n/9 plot(si, col = c("red", "green", "blue", "purple"))# with clus
ter-wise coloring[] 
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 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4437--4437
 []      \T1/pcr/m/n/9 outer = TRUE, font = par("font.main"), cex = par("cex.ma
in")); frame()[] 
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 []\T1/pcr/m/n/9 c6 <- c("tomato", "forest green", "dark blue", "purple2", "gol
denrod4", "gray20")[] 
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 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE,[] 
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 []\T1/pcr/m/n/9 str(xc1k <- xclara[ sample(nrow(xclara), size = 1000) ,]) # ro
wnames == indices[] 
[2697] [2698] [2699] [2700] [2701] [2702] [2703]
Underfull \hbox (badness 10000) in paragraph at lines 4823--4829
[]\T1/ptm/m/n/10 Our ver-sion of the []\T1/pcr/m/n/10 xclara []\T1/ptm/m/n/10 i
s slightly more rounded than the one from
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[]\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file 
`\T1/pcr/m/n/10 xclara.dat\T1/ptm/m/n/10 ' in side
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 []\T1/pcr/m/n/9 ## Visualization: Assuming groups are defined as {1:1000}, {10
01:2000}, {2001:3000} 
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 []\T1/pcr/m/n/9 p.ID <- c(78, 1411, 2535) ## PAM\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 
s medoid indices  == pam(xclara, 3)$id.med[] 
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 [] \T1/pcr/m/n/9 ## We see 3 + 2 + 2 = 7  clear "outlier"s  or "wrong group" o
bservations:[] 
[2704]
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 [] \T1/pcr/m/n/9 ## Apart from these, what are the robust ranges of indices? -
- Robust range:[] 
[2705]) (./codetools-pkg.tex [2706]
Chapter 21.
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 []           \T1/pcr/m/n/10 suppressParamUnused = !all, suppressFundefMismatch
 = FALSE,[] 
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 []           \T1/pcr/m/n/10 suppressLocalUnused = FALSE, suppressNoLocalFun = 
!all,[] 
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 []           \T1/pcr/m/n/10 skipWith = FALSE, suppressUndefined = dfltSuppress
Undefined,[] 
[2707]
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[]\T1/pcr/m/n/10 checkUsageEnv []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 checkUsage
Package []\T1/ptm/m/n/10 are con-ve-nience func-tions that ap-ply
[2708]
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 []\T1/pcr/m/n/10 makeConstantFolder(..., leaf, handler, call, exit, isLocal, f
oldable,[] 
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 []\T1/pcr/m/n/10 makeUsageCollector(fun, ..., name, enterLocal, enterGlobal, e
nterInternal,[] 
[2709] [2710] [2711]) (./foreign-pkg.tex [2712]
Chapter 22.
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[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
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\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][]$\T1/p
cr/m/n/10 https : / / support .
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\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
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\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2713]
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[]\T1/ptm/m/n/10 a char-ac-ter string with the name of the ARFF file to read fr
om, or a
[2714] [2715]
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[]\T1/ptm/m/n/10 A data frame with at-tributes. These will in-clude []\T1/pcr/m
/n/10 "datalabel"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "time.stamp"[]\T1/ptm/m/n/
10 ,
[2716]
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 []\T1/pcr/m/n/10 read.epiinfo(file, read.deleted = FALSE, guess.broken.dates =
 FALSE, 
[2717] [2718] [2719]
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 []          \T1/pcr/m/n/10 trim_values = TRUE, reencode = NA, use.missings = t
o.data.frame,[] 
[2720]
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 []          \T1/pcr/m/n/10 sub = ".", add.undeclared.levels = c("sort", "appen
d", "no"),[] 
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[]\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif-
fer-ent lev-
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\T1/ptm/m/n/10 els. For []\T1/pcr/m/n/10 "append" []\T1/ptm/m/n/10 (the de-faul
t), the first orig-i-nal value la-bel is
Underfull \hbox (badness 2269) in paragraph at lines 505--514
\T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/p
cr/m/n/10 paste0(label,
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[]\T1/ptm/m/n/10 character: the in-fix used for la-bels of fac-tor lev-els with
 du-
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\T1/ptm/m/n/10 pli-cated value la-bels in SPSS (de-fault []\T1/pcr/m/n/10 "_dup
licated_"[]\T1/ptm/m/n/10 ) if
[2721]
Underfull \hbox (badness 10000) in paragraph at lines 549--557
[]\T1/ptm/m/n/10 URL [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / 
en-[]us / windows / win32 / intl /
Underfull \hbox (badness 7613) in paragraph at lines 567--573
[]\T1/ptm/m/n/10 There may be at-tributes []\T1/pcr/m/n/10 "label.table" []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 "variable.labels"[]\T1/ptm/m/n/10 . At-tribute
[2722]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 622--622
 []\T1/pcr/m/n/9 ### hence may need some special treatment with appropriate arg
ument settings.[] 
Overfull \hbox (112.38031pt too wide) in paragraph at lines 623--623
 []\T1/pcr/m/n/9 ### Expect lots of warnings as value labels (corresponding to 
R factor labels) are uncomplete,[] 
[2723]
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 []\T1/pcr/m/n/9 ## Long Strings (>255 chars) are imported in consecutive separ
ate variables[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 660--660
 []\T1/pcr/m/n/9 cat.long.string <- function(x, w=70) cat(paste(strwrap(x, widt
h=w), "\n"))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 667--667
 []\T1/pcr/m/n/9 long.string <- apply(x[,c("string_500", "STRIN0")], 1, paste, 
collapse="")[] 
[2724] [2725]
Underfull \hbox (badness 10000) in paragraph at lines 811--812
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 []\T1/pcr/m/n/9 iris.s <- read.systat(system.file("files/Iris.syd", package="f
oreign")[1])[] 
[2726]
Underfull \hbox (badness 10000) in paragraph at lines 868--872
[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
Underfull \hbox (badness 10000) in paragraph at lines 868--872
\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][]$\T1/p
cr/m/n/10 https : / / support .
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\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
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\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2727]
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 []  \T1/pcr/m/n/10 data.restore(file, print = FALSE, verbose = FALSE, env = .G
lobalEnv) 
[2728]
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 []\T1/pcr/m/n/10 write.arff(x, file, eol = "\n", relation = deparse(substitute
(x))) 
[2729] [2730]
Underfull \hbox (badness 10000) in paragraph at lines 1075--1076
[][][]$\T1/pcr/m/n/10 https : / / www . clicketyclick . dk / databases / xbase 
/ format / data _ types .
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 []          \T1/pcr/m/n/10 convert.factors = c("labels", "string", "numeric", 
"codes"))[] 
[2731] [2732]
Underfull \hbox (badness 10000) in paragraph at lines 1268--1274
[]\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/pcr/m/n/10 foreig
n:::writeForeignStata[]\T1/ptm/m/n/10 ,
[2733]
Underfull \hbox (badness 2088) in paragraph at lines 1294--1297
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 package="SPSS"[]\T1/ptm/m/n/10 , as a sid
e ef-fect, the dec-i-mal in-di-ca-tor is al-ways set by []\T1/pcr/m/n/10 SET
[2734]) (./lattice-pkg.tex
Chapter 23.
[2735]
Underfull \hbox (badness 2073) in paragraph at lines 117--121
\T1/ptm/m/n/10 pro-vide a holis-tic in-tro-duc-tion to the Trel-lis paradigm: [
][]$\T1/pcr/m/n/10 http : / / web . archive . org /
Underfull \hbox (badness 10000) in paragraph at lines 117--121
\T1/pcr/m/n/10 web / 20081020164041 / http : / / cm . bell-[]labs . com / cm / 
ms / departments / sia /
[2736] [2737]
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 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
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 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.xyplot"),[] 
[2738]
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 []        \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defaul
t.dotplot"),[] 
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 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.barchart"),[] 
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 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.stripplot"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 334--334
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 338--338
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.bwplot"),[] 
[2739] [2740] [2741] [2742]
Underfull \hbox (badness 1221) in paragraph at lines 652--655
[]\T1/ptm/m/n/10 A log-i-cal, or a list con-tain-ing com-po-nents to be used as
 ar-gu-ments to
[2743] [2744] [2745] [2746]
Underfull \hbox (badness 2005) in paragraph at lines 990--1002
[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the un-used lev-els of 
fac-tors will be
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\T1/ptm/m/n/10 some-times ap-pro-pri-ate to sup-press drop-ping to pre-serve a 
use-ful lay-out.
[2747]
Underfull \hbox (badness 1661) in paragraph at lines 1103--1109
[]\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 sho
uld be num-bers be-tween 0 and 1, giv-ing co-or-di-nates
[2748] [2749]
Underfull \hbox (badness 1097) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 Logical flag, whether leg-end should have a
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[]\T1/ptm/m/n/10 Space be-tween col-umn blocks, in ad-di-tion to
[2750] [2751] [2752]
Underfull \hbox (badness 1540) in paragraph at lines 1483--1489
[]\T1/ptm/m/n/10 A list con-tain-ing pos-si-ble ar-gu-ments to [][][]\T1/pcr/m/
n/10 plot.trellis[][][][]\T1/ptm/m/n/10 ,
[2753]
Underfull \hbox (badness 10000) in paragraph at lines 1570--1587
[][][]\T1/pcr/m/n/10 panel.dotplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.superpose[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.loess[][][][]\T1/ptm/m/n/10 ,
[2754]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 1658--1658
 []                  \T1/pcr/m/n/9 text = list(lab = as.character(unique(Orchar
dSprays$rowpos))),[] 
[2755]
Underfull \hbox (badness 2012) in paragraph at lines 1712--1714
[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/pcr/m/n/10 xyplot[]
[][][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1742--1746
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
[2756]
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[]\T1/ptm/m/n/10 style set-tings be-yond the stan-dard []\T1/pcr/m/n/10 col[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1
/ptm/m/n/10 , etc; see
Underfull \hbox (badness 10000) in paragraph at lines 1812--1814
[]\T1/ptm/m/n/10 Gabor Grothendieck, Achim Zeileis, Deep-ayan Sarkar and Fe-lix
 An-drews
[2757] [2758] [2759] [2760]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045
 []            \T1/pcr/m/n/10 auto.key = lattice.getOption("default.args")$auto
.key,[] 
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 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.densitypl
ot"),[] 
[2761]
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[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fie
d, the value of
Underfull \hbox (badness 1320) in paragraph at lines 2128--2131
[]\T1/pcr/m/n/10 lattice.getOption("histogram.breaks") []\T1/ptm/m/n/10 is firs
t checked. If
[2762] [2763] [2764]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 2332--2332
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
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 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.qqmath"),[] 
[2765] [2766] [2767] [2768]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 2676--2676
 []          \T1/pcr/m/n/10 panel = if (useRaster) lattice.getOption("panel.lev
elplot.raster")[] 
[2769]
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 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.contourpl
ot"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active [2770]
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[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
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[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
[2771] [2772]
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the col-orkey should be
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\T1/ptm/m/n/10 ren-dered as a raster im-age us-ing [][][]\T1/pcr/m/n/10 grid.ra
ster[][][][]\T1/ptm/m/n/10 . See also
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[]\T1/ptm/m/n/10 Logical flag, passed to [][][]\T1/pcr/m/n/10 rasterGrob[][][] 
[]\T1/ptm/m/n/10 when
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[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether raster rep-re-sen-ta-ti
ons should be used,
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\T1/ptm/m/n/10 both for the false color im-age and the color key (if present). 
Ef-
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\T1/ptm/m/n/10 fec-tively, set-ting this to []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n
/10 changes the de-fault panel func-tion from
Underfull \hbox (badness 2486) in paragraph at lines 2988--2992
[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2773] [2774]
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 []      \T1/pcr/m/n/10 xlim = if (is.factor(x)) levels(x) else range(x, finite
 = TRUE),[] 
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 []      \T1/pcr/m/n/10 ylim = if (is.factor(y)) levels(y) else range(y, finite
 = TRUE),[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3093--3093
 []      \T1/pcr/m/n/10 zlim = if (is.factor(z)) levels(z) else range(z, finite
 = TRUE),[] 
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 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
cloud"),[] 
[2775]
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 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.wireframe"),[] 
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[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
Underfull \hbox (badness 3058) in paragraph at lines 3174--3181
[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
[2776] [2777] [2778] [2779]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.parallel}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3462 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                 [2780]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3504--3504
 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
splom"),[] 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3527--3527
 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.parallel"),[] 
[2781] [2782] [2783] [2784] [2785]
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 []\T1/pcr/m/n/10 oneway(formula, data, location=mean, spread=function(x) sqrt(
var(x))) 
[2786]
Underfull \hbox (badness 2277) in paragraph at lines 3949--3953
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings by
Underfull \hbox (badness 2435) in paragraph at lines 3949--3953
\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2787] [2788]
Overfull \hbox (120.78088pt too wide) in paragraph at lines 4046--4046
 []               \T1/pcr/m/n/10 symbol = palette.colors(palette = "Okabe-Ito")
[c(6, 2, 4, 7, 3, 5, 8)],[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 4048--4048
 []               \T1/pcr/m/n/10 region = hcl.colors(14, palette = "YlGnBu", re
v = TRUE),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 4055--4055
 []             \T1/pcr/m/n/10 reference = "gray90", bg = "transparent", fg = "
black",[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 4056--4056
 []             \T1/pcr/m/n/10 strip.bg = rep("gray95", 7), strip.fg = rep("gra
y70", 7),[] 
[2789] [2790]
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 []\T1/pcr/m/n/10 trellis.par.set(name, value, ..., theme, warn = TRUE, strict 
= FALSE) 
Underfull \hbox (badness 1173) in paragraph at lines 4208--4212
[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
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[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
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[]\T1/pcr/m/n/10 theme[]\T1/ptm/m/n/10 ). These are used to mod-ify the cur-ren
t set-tings (ob-tained by
[2791]
Underfull \hbox (badness 5161) in paragraph at lines 4317--4321
[]\T1/ptm/m/n/10 The ac-tual list of the com-po-nents in []\T1/pcr/m/n/10 trell
is.settings []\T1/ptm/m/n/10 has not been fi-nal-ized,
Underfull \hbox (badness 4913) in paragraph at lines 4317--4321
\T1/ptm/m/n/10 so I'm not at-tempt-ing to list them here. The cur-rent value ca
n be ob-tained by
[2792] [2793]
Underfull \hbox (badness 1067) in paragraph at lines 4435--4445
[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/pcr/m/n/10 col []\T1/ptm/m/n/
10 is used for com-po-nents []\T1/pcr/m/n/10 "plot.symbol"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4435--4445
[]\T1/pcr/m/n/10 "plot.line"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "plot.polygon"[
]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1735) in paragraph at lines 4435--4445
[]\T1/pcr/m/n/10 "superpose.line"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "super
pose.polygon"[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 col.points
Underfull \hbox (badness 10000) in paragraph at lines 4435--4445
[]\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , but is used 
only for []\T1/pcr/m/n/10 "plot.symbol" []\T1/ptm/m/n/10 and
Underfull \hbox (badness 5231) in paragraph at lines 4435--4445
[]\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 . Sim-i-larly, []\T1/pcr/m/
n/10 col.line []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col []\T1/ptm/m/n/10
 for
Underfull \hbox (badness 1701) in paragraph at lines 4460--4463
[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 pl
ot.symbol[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 plot.polygon[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4463--4465
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 
plot.polygon []\T1/ptm/m/n/10 and
[2794] [2795]
Underfull \hbox (badness 2932) in paragraph at lines 4606--4611
[]\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 aspect[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 between[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 grid[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 skip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 ,
[2796] [2797] [2798] [2799]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4882--4882
 []\T1/pcr/m/n/9 p12 <- densityplot( ~ height | voice.part, data = singer, xlab
 = "Height")[] 
[2800] [2801] [2802]
Underfull \hbox (badness 10000) in paragraph at lines 5069--5072
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 trellis[]\T1/ptm/m/n/10 ,
 by de-fault plot-ted by []\T1/pcr/m/n/10 print.trellis[]\T1/ptm/m/n/10 .
[2803]
Underfull \hbox (badness 1442) in paragraph at lines 5201--5204
[]\T1/pcr/m/n/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gle
s via rect-an-gles. []\T1/pcr/m/n/10 print.shingle []\T1/ptm/m/n/10 and
[2804] [2805] [2806] [2807] [2808] [2809]
Underfull \hbox (badness 3646) in paragraph at lines 5540--5543
[][][]\T1/pcr/m/n/10 Lattice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 draw.
key[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 trellis.par.get[][][][]\T1/ptm
/m/n/10 , and [][][]\T1/pcr/m/n/10 xyplot[][][][]\T1/ptm/m/n/10 , specif-i-call
y the en-try for
Overfull \hbox (36.78088pt too wide) in paragraph at lines 5570--5570
 []              \T1/pcr/m/n/10 bg = trellis.par.get("strip.background")$col[wh
ich.given],[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 5571--5571
 []              \T1/pcr/m/n/10 fg = trellis.par.get("strip.shingle")$col[which
.given],[] 
[2810]
Underfull \hbox (badness 10000) in paragraph at lines 5659--5662
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 2103) in paragraph at lines 5659--5662
[]\T1/pcr/m/n/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on the
 left of pan-els us-ing
[2811]
Underfull \hbox (badness 1635) in paragraph at lines 5685--5690
[]\T1/pcr/m/n/10 strip.default []\T1/ptm/m/n/10 is called for its side-effect, 
which is to draw a strip ap-pro-pri-ate for
[2812]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5836--5836
 []\T1/pcr/m/n/10 panel.identify.qqmath(x, distribution, groups, subscripts, la
bels,[] 
[2813]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 5850--5850
 []\T1/pcr/m/n/10 panel.link.splom(threshold = 18, verbose = getOption("verbose
"), ...)[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 5851--5851
 []\T1/pcr/m/n/10 panel.brush.splom(threshold = 18, verbose = getOption("verbos
e"), ...)[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 5854--5854
 []\T1/pcr/m/n/10 trellis.vpname(name = c("position", "split", "split.location"
, "toplevel",[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 5857--5857
 []                        \T1/pcr/m/n/10 "xlab", "ylab", "xlab.top", "ylab.rig
ht", "page"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 5859--5859
 []               \T1/pcr/m/n/10 side = c("left", "top", "right", "bottom", "in
side"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5865--5865
 []                 \T1/pcr/m/n/10 which.given = lattice.getStatus("current.whi
ch.given",[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5866--5866
 []                                                 \T1/pcr/m/n/10 prefix = pre
fix),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5867--5867
 []                 \T1/pcr/m/n/10 which.panel = lattice.getStatus("current.whi
ch.panel",[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5868--5868
 []                                                 \T1/pcr/m/n/10 prefix = pre
fix),[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 5869--5869
 []                 \T1/pcr/m/n/10 column = lattice.getStatus("current.focus.co
lumn",[] 
Underfull \hbox (badness 10000) in paragraph at lines 5885--5887
[]\T1/ptm/m/n/10 variables defin-ing the con-tents of the panel. In the case of
Underfull \hbox (badness 2376) in paragraph at lines 5896--5898
[]\T1/ptm/m/n/10 an op-tional vec-tor of la-bels as-so-ci-ated with each point.
 De-faults to
[2814] [2815]
Underfull \hbox (badness 2538) in paragraph at lines 6021--6025
\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 trellis.focus[]\T1/ptm/m/n/10 , the de-faul
t is []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 in in-ter-ac-tive mode, and
Underfull \hbox (badness 4205) in paragraph at lines 6032--6039
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , e
x-tra pa-ram-e-ters are passed on to
Underfull \hbox (badness 4792) in paragraph at lines 6032--6039
[]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 trellis.switchFocus[]\T1/ptm/m/n/10 , the
se are used (in com-bi-na-tion with
[2816] [2817]
Underfull \hbox (badness 10000) in paragraph at lines 6185--6189
[][][]\T1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Latt
ice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.trellis[][][][]\T1/ptm/m
/n/10 , [][][]\T1/pcr/m/n/10 trellis.currentLayout[][][][]\T1/ptm/m/n/10 ,
[2818] [2819]
Underfull \hbox (badness 4242) in paragraph at lines 6332--6337
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
[2820] [2821]
Underfull \hbox (badness 3601) in paragraph at lines 6448--6453
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/pcr/m/n/10 x []\T1/ptm/m
/n/10 for ev-ery level of []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 (or the other way
 round
Underfull \hbox (badness 2486) in paragraph at lines 6448--6453
\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 horizontal=FALSE[]\T1/ptm/m/n/10 ). By de-fa
ult, the ac-tual box-plot statis-tics are cal-cu-lated us-ing
[2822]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 6536--6536
 []             \T1/pcr/m/n/10 shade.colors.palette = trellis.par.get("shade.co
lors")$palette,[] 
[2823] [2824] [2825]
Underfull \hbox (badness 10000) in paragraph at lines 6735--6739
[]\T1/ptm/m/n/10 All three num-bers should be be-tween 0 and 1. The
Underfull \hbox (badness 10000) in paragraph at lines 6740--6742
[]\T1/ptm/m/n/10 numeric, be-tween 0 and 1, giv-ing a min-i-mum sat-u-ra-tion i
n
[2826]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6836--6836
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Inferno"),[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 6839--6839
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Dark Mint"),[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6842--6842
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Harmonic"),[] 
[2827] [2828] [2829] [2830] [2831] [2832]
Underfull \hbox (badness 1320) in paragraph at lines 7204--7211
[]\T1/pcr/m/n/10 panel.levelplot.raster []\T1/ptm/m/n/10 is an al-ter-na-tive p
anel func-tion that uses the raster draw-
Underfull \hbox (badness 1715) in paragraph at lines 7204--7211
\T1/ptm/m/n/10 can only ren-der data on an eq-ui-s-paced grid), but can be more
 ef-fi-cient. When us-ing
[2833]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 7279--7279
 []                 \T1/pcr/m/n/10 varname = NULL, limits, at = NULL, labels = 
NULL,[] 
[2834]
Underfull \hbox (badness 10000) in paragraph at lines 7309--7313
[]\T1/ptm/m/n/10 The panel func-tion used for the di-ag-o-nals. See ar-gu-ments
 to
Underfull \hbox (badness 1584) in paragraph at lines 7309--7313
[]\T1/pcr/m/n/10 diag.panel.splom []\T1/ptm/m/n/10 to know what ar-gu-ments thi
s func-tion is passed
[2835]
Underfull \hbox (badness 10000) in paragraph at lines 7414--7417
\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 diag.panel []\T1/ptm/m/n/10 from []\T1/pcr/
m/n/10 panel.pairs[]\T1/ptm/m/n/10 . Cur-rently ig-nored by
Overfull \hbox (101.58032pt too wide) in paragraph at lines 7439--7439
 []              \T1/pcr/m/n/9 function(i,j) hcl.colors(11)[i+j-1]) ## rainbow(
11, start=.12, end=.5)[i+j-1])[] 
[2836] [2837]
Underfull \hbox (badness 2012) in paragraph at lines 7580--7583
[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2838]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7626--7626
 []                  \T1/pcr/m/n/9 panel.qqmath(..., f.value = ppoints(100), ta
ils.n = 50))[] 
[2839] [2840] [2841]
Underfull \hbox (badness 1939) in paragraph at lines 7815--7823
[]\T1/pcr/m/n/10 "lm" []\T1/ptm/m/n/10 adds a lin-ear re-gres-sion line (same a
s [][][]\T1/pcr/m/n/10 panel.lmline[][][][]\T1/ptm/m/n/10 , ex-cept
Underfull \hbox (badness 1163) in paragraph at lines 7815--7823
\T1/ptm/m/n/10 for de-fault graph-i-cal pa-ram-e-ters). []\T1/pcr/m/n/10 "loess
" []\T1/ptm/m/n/10 adds a loess fit (same as
Underfull \hbox (badness 2772) in paragraph at lines 7838--7841
[]\T1/ptm/m/n/10 Most gen-er-ally, []\T1/pcr/m/n/10 grid []\T1/ptm/m/n/10 can b
e a list of ar-gu-ments to be sup-plied to
[2842]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 7909--7909
 []       \T1/pcr/m/n/9 ylab = list(c("horizontal=TRUE", "horizontal=FALSE"), y
 = c(1/6, 4/6)),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7919--7919
 []       \T1/pcr/m/n/9 scales = list(alternating = c(0, 2), tck = c(0, 0.7), d
raw = FALSE),[] 
[2843]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 7980--7980
 []        \T1/pcr/m/n/10 font, fontfamily, fontface, cex, ..., identifier, nam
e.type)[] 
Overfull \hbox (72.78088pt too wide) in paragraph at lines 7985--7985
 []      \T1/pcr/m/n/10 adj = c(0.5, 0.5), pos = NULL, offset = 0.5, ..., ident
ifier, name.type)[] 
[2844] [2845] [2846]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 8170--8170
 []\T1/pcr/m/n/10 panel.grid(h=3, v=3, col, col.line, lty, lwd, x, y, ..., iden
tifier = "grid")[] 
[2847]
Underfull \hbox (badness 1436) in paragraph at lines 8225--8231
[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
[2848]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 8355--8355
 []           \T1/pcr/m/n/9 panel.superpose(x, y, ..., panel.groups = panel.ave
rage, grid = FALSE,[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 8369--8369
 []                                \T1/pcr/m/n/9 args = list(mean = mean(x), sd
 = sd(x)), ...)[] 
[2849] [2850] [2851] [2852] [2853] [2854] [2855]
Underfull \hbox (badness 10000) in paragraph at lines 8794--8797
[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/pcr/m/n/10 panel.super
pose
Underfull \hbox (badness 10000) in paragraph at lines 8794--8797
[]\T1/ptm/m/n/10 from []\T1/pcr/m/n/10 panel.superpose.2[]\T1/ptm/m/n/10 , and 
to []\T1/pcr/m/n/10 panel.groups []\T1/ptm/m/n/10 from
[2856] [2857]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 8969--8969
 []\T1/pcr/m/n/10 prepanel.default.bwplot(x, y, horizontal, nlevels, origin, st
ack, ...)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 8970--8970
 []\T1/pcr/m/n/10 prepanel.default.histogram(x, breaks, equal.widths, type, nin
t, ...)[] 
[2858]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 8982--8982
 []\T1/pcr/m/n/10 prepanel.default.densityplot(x, darg, groups, weights, subscr
ipts, ...)[] 
Underfull \hbox (badness 3118) in paragraph at lines 9001--9004
[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/pcr/m/n/10 type [
]\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2859]
Underfull \hbox (badness 1515) in paragraph at lines 9077--9081
[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2860] [2861]
Underfull \hbox (badness 6316) in paragraph at lines 9183--9188
[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
[2862]
Overfull \hbox (47.58038pt too wide) in paragraph at lines 9293--9293
 []                \T1/pcr/m/n/9 ans$bottom$labels$labels <- parse(text = ans$b
ottom$labels$labels)[] 
[2863] [2864]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 9432--9432
 []\T1/pcr/m/n/9 xyplot(sunspot.year ~ time(sunspot.year) | equal.count(time(su
nspot.year)),[] 
[2865]
Underfull \hbox (badness 1028) in paragraph at lines 9491--9495
\T1/pcr/m/n/10 condition []\T1/ptm/m/n/10 for 2-D, and []\T1/pcr/m/n/10 left, r
ight.x, right.y, left.name, right.x.name,
[2866] [2867] [2868] [2869] [2870] [2871] [2872]
Underfull \hbox (badness 7238) in paragraph at lines 9955--9959
[]\T1/ptm/m/n/10 Factor with lev-els []\T1/pcr/m/n/10 "Svansota"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Manchuria"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 475"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9955--9959
[]\T1/pcr/m/n/10 "Velvet"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Peatland"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Glabron"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 4
57"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Wisconsin No. 38"[]\T1/ptm/m/n/10 ,
[2873] [2874] [2875]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.melanoma}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10186 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                 [2876] [2877] [2878]
Underfull \hbox (badness 10000) in paragraph at lines 10348--10353
\T1/pcr/m/n/10 diseases[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Diabetes[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 Flu and pneumonia[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 He
art disease[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Lower
Overfull \hbox (9.78043pt too wide) in paragraph at lines 10421--10421
 []        \T1/pcr/m/n/9 par.settings = simpleTheme(pch = 16), auto.key = list(
columns = 2),[] 
[2879] [2880]) (./mgcv-pkg.tex
Chapter 24.
[2881] [2882]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 160--160
 []\T1/pcr/m/n/10 bam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL, 
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 []    \T1/pcr/m/n/10 paraPen=NULL,chunk.size=10000,rho=0,AR.start=NULL,discret
e=FALSE,[] 
[2883]
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 []    \T1/pcr/m/n/10 coef=NULL,drop.unused.levels=TRUE,G=NULL,fit=TRUE,drop.in
tercept=NULL,...)[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2884] [2885] [2886] [2887]
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[][][]\T1/pcr/m/n/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
[2888]
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 []\T1/pcr/m/n/9 system.time(b2 <- bam(y ~ s(x0,bs=bs,k=k)+s(x1,bs=bs,k=k)+s(x2
,bs=bs,k=k)+[] 
[2889] [2890] [2891]
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[]\T1/ptm/m/n/10 The link func-tion: one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cloglog" 
[]\T1/ptm/m/n/10 and
[2892] [2893]
Underfull \hbox (badness 1406) in paragraph at lines 704--705
[]\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t
ing en-vi-ron-ment vari-able
[2894] [2895]
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[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
[2896]
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[]\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro
-duc-tion with R (2nd edi-tion).
[2897]
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[2899] [2900] [2901] [2902] [2903] [2904] [2905]
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h + 2*b$family$data$
q^.5),col=2)[] 
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h - 2*b$family$data$
q^.5),col=2)[] 
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 []    \T1/pcr/m/n/9 plot(b$y[oy],rs[oy,ii[1]],ylim=c(-3,3),type="l",ylab="scor
e residuals",[] 
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 []\T1/pcr/m/n/9 bs <- gam(cbind(time,strata)~s(age,by=sex)+sex+s(nodes)+perfor
+rx+obstruct[] 
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 []\T1/pcr/m/n/9 if (i==1) plot(bs$family$data$tr[ind],exp(-bs$family$data$h[in
d]),type="l",[] 
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 []      \T1/pcr/m/n/9 lines(bs$family$data$tr[ind],exp(-bs$family$data$h[ind])
,lwd=2,col=i)[] 
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 []\T1/pcr/m/n/9 b <- gam(t~s(x0)+s(x1)+s(x2,k=15)+s(x3),family=cox.ph,weights=
d,data=surv)[] 
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[2908]
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 []  \T1/pcr/m/n/9 if (inter) prg <- txtProgressBar(min = 0, max = length(sid),
 initial = 0,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 1503--1503
 []    \T1/pcr/m/n/9 if (um[[et]][1]==max(tr)&&um[[status]][1]==1) um[[event]][
nrow(um)] <- 1[] 
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 []\T1/pcr/m/n/9 pd <- data.frame(lapply(X=di,FUN=app,t=di$day,to=te)) ## inter
polate to te[] 
[2910] [2911] [2912] [2913] [2914] [2915] [2916]
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 []\T1/pcr/m/n/9 bd <- bam(y~s(x0)+ s(x1) + s(x1,fac,bs="sz",k=5)+s(x2,k=20),di
screte=TRUE)[] 
[2917] [2918] [2919]
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 []\T1/pcr/m/n/10 fixDependence(X1,X2,tol=.Machine$double.eps^.5,rank.def=0,str
ict=FALSE) 
[2920] [2921] [2922] [2923] [2924] [2925] [2926]
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 []\T1/pcr/m/n/10 gam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL,[] 
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[]\T1/ptm/m/n/10 A GAM for-mula, or a list of for-mu-lae (see [][][]\T1/pcr/m/n
/10 formula.gam[][][] []\T1/ptm/m/n/10 and also
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2927]
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2928] [2929] [2930]
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\T1/ptm/m/n/10 eral lin-ear func-tion-als of smooths, via the sum-ma-tion con-v
en-tion mech-a-nism de-scribed in
[2931] [2932]
Underfull \hbox (badness 10000) in paragraph at lines 2925--2931
[][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
gamObject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 2925--2931
[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
[2933]
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[2936] [2937]
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 []\T1/pcr/m/n/10 gam.control(nthreads=1,ncv.threads=1,irls.reg=0.0,epsilon = 1
e-07, maxit = 200, 
[2938] [2939] [2940] [2941] [2942] [2943]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 3583--3583
 []         \T1/pcr/m/n/10 mustart = NULL, offset = rep(0, nobs), U1 = diag(nco
l(x)),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 3586--3586
 []         \T1/pcr/m/n/10 printWarn=TRUE,scoreType="REML",null.coef=rep(0,ncol
(x)),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3587--3587
 []         \T1/pcr/m/n/10 pearson.extra=0,dev.extra=0,n.true=-1,Sl=NULL,nei=NU
LL,...)[] 
[2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951]
Underfull \hbox (badness 5189) in paragraph at lines 4065--4069
[]\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/pcr/m/n/10 gam []\T1/ptm
/m/n/10 mod-els us-ing []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (
see
[2952] [2953]
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 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
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[2955] [2956]
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[]\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix
ed penalty, if
[2957] [2958] [2959] [2960] [2961] [2962] [2963]
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 []  \T1/pcr/m/n/9 mod <- gam(y~s(a,bs="re")+s(b,bs="re")+s(a,b,bs="re")+s(x0,i
d=1)+s(x1,id=1)+[] 
[2964] [2965] [2966]
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 []\T1/pcr/m/n/10 gamlss.gH(X, jj, l1, l2, i2, l3 = 0, i3 = 0, l4 = 0, i4 = 0, 
d1b = 0, 
[2967] [2968]
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2969]
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[]\T1/ptm/m/n/10 In the event of []\T1/pcr/m/n/10 lme []\T1/ptm/m/n/10 con-ver-
gence fail-ures, con-sider mod-i-fy-ing
[2970] [2971]
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[][][]\T1/pcr/m/n/10 magic[][][] []\T1/ptm/m/n/10 for an al-ter-na-tive for cor
-re-lated data, [][][]\T1/pcr/m/n/10 te[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gam[][][][]\T1/ptm
/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 n
egbin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 vis.gam[][][][]\T1/ptm/m/n/1
0 ,[][][]\T1/pcr/m/n/10 pdTens[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gamm4 [
]\T1/ptm/m/n/10 ( [][]$\T1/pcr/m/n/10 https : / / cran . r-[]project .
[2972]
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[2974] [2975] [2976]
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[]\T1/ptm/m/n/10 If `outer' it-er-a-tion has been used to fit the model (see []
[][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 ar-gu-ment
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[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
[2977] [2978] [2979] [2980] [2981] [2982] [2983]
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[]\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/pcr/m/n/10 gam(..
.,fit=FALSE) []\T1/ptm/m/n/10 or
[2984] [2985]
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 []  \T1/pcr/m/n/9 ## example using a scale location model for the motorcycle d
ata. A simple plotting[] 
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 []      \T1/pcr/m/n/9 } else lines(xg,predict(din,xg)$y,col=lcol[j],lwd=lwd[j]
,lty=lty[j])[] 
[2986]
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 []  \T1/pcr/m/n/9 fv <- predict(b,se=TRUE) ## usual Gaussian approximation, fo
r comparison[] 
[2987] [2988]
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 []       \T1/pcr/m/n/9 (1+exp(-10*(x[201:300]-.5)))-0.9933071) + z*(1-z)*5 + r
norm(100)*.4[] 
[2989] [2990] [2991] [2992] [2993]
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 []\T1/pcr/m/n/10 jagam(formula,family=gaussian,data=list(),file,weights=NULL,n
a.action, 
[2994]
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 []\T1/pcr/m/n/10 control=gam.control(),centred=TRUE,sp.prior = "gamma",diagona
lize=FALSE)[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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[2999] [3000]
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 []\T1/pcr/m/n/10 ldTweedie(y,mu=y,p=1.5,phi=1,rho=NA,theta=NA,a=1.001,b=1.999,
all.derivs=FALSE) 
[3001] [3002] [3003] [3004]
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[3007] [3008]
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 []\T1/pcr/m/n/9 "The world is ruled by idiots because only an idiot would want
 to rule the world.",[] 
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 []      \T1/pcr/m/n/10 .Machine$double.eps^0.5),extra.rss=0,n.score=length(y),
nthreads=1)[] 
[3009] [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017]
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[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
[3018] [3019]
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 []\T1/pcr/m/n/9 ## Alternative, better scaling example, using the discrete opt
ion with bam...[] 
[3020] [3021]
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 []\T1/pcr/m/n/9 for (sim in c(1,7)) { ## cycle over uncorrelated and correlate
d covariates[] 
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 []    \T1/pcr/m/n/9 dat1[[dname[i]]][dat1[[by.name]]] <- mean(dat1[[dname[i]]]
,na.rm=TRUE)[] 
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[3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033]
[3034] [3035] [3036] [3037] [3038] [3039]
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[3041]
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[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/pcr/m/n/10 Dim
.pdIndot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9309--9312
[]\T1/pcr/m/n/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 logDet.pd
Idnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdConstruct.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3118) in paragraph at lines 9309--9312
[]\T1/pcr/m/n/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdMatrix.p
dIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 solve.pdIdnot[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 summary.pdIdnot[]\T1/ptm/m/n/10 .
[3042]
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[]\T1/ptm/m/n/10 These func-tions ([]\T1/pcr/m/n/10 pdTens[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdFactor.p
dTens[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdTens
 []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 summary.pdTens[]\T1/ptm/m/n/10 ) would n
ot nor-mally be
[3043] [3044] [3045]
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 []\T1/pcr/m/n/10 plot(x,residuals=FALSE,rug=NULL,se=TRUE,pages=0,select=NULL,s
cale=-1,[] 
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 []         \T1/pcr/m/n/10 n=100,n2=40,n3=3,pers=FALSE,theta=30,phi=30,jit=FALS
E,xlab=NULL,[] 
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 []         \T1/pcr/m/n/10 trans=I,seWithMean=FALSE,unconditional=FALSE,by.resi
ds=FALSE,[] 
[3046] [3047] [3048]
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[]\T1/ptm/m/n/10 just won't let you do it. In this case, the quick-est op-tion 
is some-times to clone the
[3049] [3050] [3051] [3052]
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 []        \T1/pcr/m/n/10 na.action=na.pass,cluster=NULL,discrete=TRUE,n.thread
s=1,gc.level=0,...)[] 
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[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 type=="terms" []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 type="iterms" []\T1/ptm/m/n/10 then terms (smooth or para-
[3053] [3054] [3055]
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 []        \T1/pcr/m/n/10 na.action=na.pass,unconditional=FALSE,iterms.type=NUL
L,...)[] 
[3056] [3057]
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 []\T1/pcr/m/n/9 x1 <- seq(.2,.8,length=m1);x2 <- seq(.2,.8,length=m2) ## margi
nal grid points[] 
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 []\T1/pcr/m/n/9 df <- data.frame(x0=rep(.5,n),x1=rep(x1,m2),x2=rep(x2,each=m1)
,x3=rep(0,n))[] 
[3058]
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 []  \T1/pcr/m/n/9 Xi[,(i-1)*9+1:9+1] <- Xp[,(i-1)*9+1:9+1] ## Xi%*%coef(b) = s
mooth deriv i[] 
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Underfull \hbox (badness 1205) in paragraph at lines 10448--10449
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
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\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
Underfull \hbox (badness 1975) in paragraph at lines 10454--10459
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[3061]
Underfull \hbox (badness 1205) in paragraph at lines 10538--10539
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 10538--10539
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
[3062]
Underfull \hbox (badness 10000) in paragraph at lines 10607--10610
[]\T1/ptm/m/n/10 The smooth ob-ject will be largely what is re-turned from
Underfull \hbox (badness 2057) in paragraph at lines 10607--10610
[][][]\T1/pcr/m/n/10 smooth.construct.so.smooth.spec[][][][]\T1/ptm/m/n/10 , al
-though el-e-ments []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 S [
]\T1/ptm/m/n/10 are not needed,
[3063] [3064] [3065]
Underfull \hbox (badness 1253) in paragraph at lines 10737--10739
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
[3066] [3067] [3068] [3069] [3070]
Underfull \hbox (badness 1946) in paragraph at lines 10990--10997
[]\T1/ptm/m/n/10 The sec-ond method rep-re-sents the con-ven-tional ran-dom ef-
fects in a GAM in the same
Underfull \hbox (badness 2221) in paragraph at lines 10990--10997
\T1/ptm/m/n/10 way that the smooths are rep-re-sented --- as pe-nal-ized re-gre
s-sion terms. This method
Underfull \hbox (badness 2042) in paragraph at lines 10990--10997
\T1/ptm/m/n/10 can be used with [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10
 by mak-ing use of []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms in a 
model: see
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[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/pcr/m/n
/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/pcr/m/n/10 gam[][][] []\T1
/ptm/m/n/10 can be used:
Underfull \hbox (badness 5862) in paragraph at lines 10998--11001
\T1/ptm/m/n/10 see [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 . If s
mooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[3071]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 11064--11064
 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11074--11074
 []\T1/pcr/m/n/9 ## The effect of the new factor levels (or any interaction inv
olving them)[] 
[3072]
Underfull \hbox (badness 10000) in paragraph at lines 11105--11108
[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/pcr/m/n/
10 "deviance"[]\T1/ptm/m/n/10 ,
[3073] [3074] [3075] [3076] [3077]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 11407--11407
 []\T1/pcr/m/n/10 s(..., k=-1,fx=FALSE,bs="tp",m=NA,by=NA,xt=NULL,id=NULL,sp=NU
LL,pc=NULL) 
[3078] [3079] [3080] [3081] [3082] [3083]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 11780--11780
 []  \T1/pcr/m/n/9 true <- mu + (del * sigma) * sinh((1/del) * asinh(qnorm(qq))
 + (eps/del))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11794--11794
 []\T1/pcr/m/n/9 b <- gam(list(accel~s(times, k=20, bs = "ad"), ~s(times, k = 1
0), ~1, ~1),[] 
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[3085]
Underfull \hbox (badness 3861) in paragraph at lines 11896--11899
[]\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to
 model ma-trix X, or, if
Overfull \hbox (36.78088pt too wide) in paragraph at lines 11905--11905
 []\T1/pcr/m/n/10 Sl.initial.repara(Sl, X, inverse = FALSE, both.sides = TRUE, 
cov = TRUE,[] 
[3086]
Underfull \hbox (badness 10000) in paragraph at lines 11922--11926
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
Underfull \hbox (badness 10000) in paragraph at lines 11962--11966
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
[3087] [3088] [3089]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12106--12106
 [] \T1/pcr/m/n/9 range(er$values-um$values[ind]);range(abs(er$vectors)-abs(um$
vectors[,ind]))[] 
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[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[3090]
Underfull \hbox (badness 1803) in paragraph at lines 12194--12198
\T1/ptm/m/n/10 The last en-try will be the []\T1/pcr/m/n/10 by []\T1/ptm/m/n/10
 vari-able, if []\T1/pcr/m/n/10 object$by []\T1/ptm/m/n/10 is not []\T1/pcr/m/n
/10 "NA"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 1502) in paragraph at lines 12206--12218
[]\T1/pcr/m/n/10 cs.smooth.spec []\T1/ptm/m/n/10 (cu-bic re-gres-sion splines w
ith shrinkage-to-zero); []\T1/pcr/m/n/10 cc.smooth.spec
[3091]
Underfull \hbox (badness 2401) in paragraph at lines 12223--12227
[]\T1/ptm/m/n/10 method is used if there is no more spe-cific method avail-able
. Plot meth-ods can be
Underfull \hbox (badness 2970) in paragraph at lines 12223--12227
\T1/ptm/m/n/10 added for spe-cific smooth classes, see source code for []\T1/pc
r/m/n/10 mgcv:::plot.sos.smooth[]\T1/ptm/m/n/10 ,
[3092] [3093] [3094]
Underfull \hbox (badness 6876) in paragraph at lines 12418--12424
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of on
e or two vari-ables, spec-i-fied via terms like
[3095]
Underfull \hbox (badness 10000) in paragraph at lines 12459--12460
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3096] [3097]
Underfull \hbox (badness 10000) in paragraph at lines 12577--12578
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3098]
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 []  \T1/pcr/m/n/9 b <- gam(y~s(x0,bs=bs,m=c(4,2))+s(x1,bs=bs)+s(x2,k=15,bs=bs,
m=c(4,3,0))+[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12643--12643
 []  \T1/pcr/m/n/9 ## now a model with first order penalty evaluated over (-.5,
1.5) (black)[] 
[3099]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12655--12655
 []  \T1/pcr/m/n/9 ## penalty defined on (-.5,1.5) gives plausible predictions 
and intervals[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12660--12660
 []  \T1/pcr/m/n/9 ## penalty defined on whole real line gives constant width i
ntervals away[] 
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 []  \T1/pcr/m/n/9 ## penalty defined only over the data interval (0,1) gives w
ild and wide[] 
Overfull \hbox (3.70428pt too wide) in paragraph at lines 12667--12667
 []  \T1/pcr/m/n/9 ## extrapolation since penalty has been \TS1/cmtt/m/n/9 `\T1
/pcr/m/n/9 turned off\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 outside data range:[] 
[3100]
Underfull \hbox (badness 10000) in paragraph at lines 12736--12738
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a
Underfull \hbox (badness 10000) in paragraph at lines 12736--12738
\T1/ptm/m/n/10 term []\T1/pcr/m/n/10 s(...,bs="cr",...)[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 s(...,bs="cs",...) []\T1/ptm/m/n/10 or
[3101] [3102]
Underfull \hbox (badness 10000) in paragraph at lines 12866--12867
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3103] [3104]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12947--12947
 []\T1/pcr/m/n/9 b <- gam(y~s(x,z,bs="ds",m=c(1,.5),k=50),data=data)  ## first 
deriv penalty[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12948--12948
 []\T1/pcr/m/n/9 b1 <- gam(y~s(x,z,bs="ds",m=c(2,.5),k=50),data=data) ## modifi
ed 2nd deriv[] 
[3105] [3106]
Underfull \hbox (badness 10000) in paragraph at lines 13101--13102
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3107] [3108] [3109] [3110] [3111]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13351--13351
 []\T1/pcr/m/n/9 b <- gam(crime ~ s(district,bs="mrf",k=20,xt=xt),data=columb,m
ethod="REML")[] 
[3112]
Underfull \hbox (badness 10000) in paragraph at lines 13412--13414
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3113] [3114]
Underfull \hbox (badness 10000) in paragraph at lines 13571--13574
[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 smooth.construct []\T1/ptm/m/n/10 met
hod a smooth spec-i-fi-ca-tion ob-
Underfull \hbox (badness 3312) in paragraph at lines 13571--13574
\T1/ptm/m/n/10 ject, usu-ally gen-er-ated by a term []\T1/pcr/m/n/10 s(x,...,bs
="re",)[]\T1/ptm/m/n/10 . For the
Underfull \hbox (badness 7099) in paragraph at lines 13571--13574
[]\T1/pcr/m/n/10 predict.Matrix []\T1/ptm/m/n/10 method an ob-ject of class []\
T1/pcr/m/n/10 "random.effect"
[3115] [3116]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13657--13657
 []\T1/pcr/m/n/9 b <- c(rnorm(nb/2)*2,rnorm(nb/2)*.5) ## random effect now with
 2 variances[] 
[3117]
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[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
Underfull \hbox (badness 7832) in paragraph at lines 13702--13708
[]\T1/pcr/m/n/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a
 []\T1/pcr/m/n/10 gam []\T1/ptm/m/n/10 for-
[3118] [3119] [3120]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 13916--13916
 []\T1/pcr/m/n/9 ## notice NULL element in \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 xt\TS1
/pcr/m/n/9 ' \T1/pcr/m/n/9 list - to indicate no xt object for "cr" basis...[] 
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Underfull \hbox (badness 10000) in paragraph at lines 14019--14027
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths on th
e sphere, via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14045--14046
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3123] [3124] [3125]
Underfull \hbox (badness 7613) in paragraph at lines 14190--14193
[]\T1/ptm/m/n/10 method an ob-ject of class []\T1/pcr/m/n/10 "sz.interaction" [
]\T1/ptm/m/n/10 pro-duced by the
[3126]
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[]\T1/ptm/m/n/10 The terms can have a smooth-ing pa-ram-e-ter per smooth, or a 
sin-gle smooth-ing pa-ram-e-
Overfull \hbox (128.58029pt too wide) in paragraph at lines 14257--14257
 []\T1/pcr/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs
="sz",id=1),data=dat,method="REML")[] 
[3127] [3128] [3129]
Underfull \hbox (badness 3396) in paragraph at lines 14403--14406
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of an
y num-ber of vari-ables, spec-i-fied via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14448--14450
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3130] [3131] [3132] [3133] [3134] [3135]
Underfull \hbox (badness 10000) in paragraph at lines 14739--14741
[]\T1/pcr/m/n/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see
Underfull \hbox (badness 10000) in paragraph at lines 14769--14773
[][][]\T1/pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 t2[][][] [][]tprs[][][][]\T1/ptm/m/n/10 ,[
][][]\T1/pcr/m/n/10 Duchon.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
cubic.regression.spline[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 p.spline[][
][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14769--14773
[][][]\T1/pcr/m/n/10 mrf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 soap[][][
][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Spherical.Spline[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 adaptive.smooth[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14769--14773
[][][]\T1/pcr/m/n/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 ,
[3136] [3137] [3138] [3139] [3140]
Underfull \hbox (badness 2158) in paragraph at lines 15059--15059
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[3141] [3142]
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 []\T1/pcr/m/n/10 spasm.sp(object,sp,w=rep(1,object$nobs),get.trH=TRUE,block=0,
centre=FALSE)[] 
[3143] [3144]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 15272--15272
 []                  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars
"),...)[] 
[3145] [3146]
Underfull \hbox (badness 4846) in paragraph at lines 15403--15406
[]\T1/ptm/m/n/10 The es-ti-mated co-vari-ance ma-trix of the pa-ram-e-ters (or 
es-ti-ma-tors if
[3147] [3148] [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157]
[3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166]
Overfull \hbox (120.78088pt too wide) in paragraph at lines 16621--16621
 []\T1/pcr/m/n/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL,
unconditional=FALSE, ...)[] 
[3167]
Underfull \hbox (badness 1715) in paragraph at lines 16643--16644
[]\T1/ptm/m/n/10 Basically, just ex-tracts []\T1/pcr/m/n/10 object$Ve[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 object$Vp []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 object
$Vc []\T1/ptm/m/n/10 (if avail-able) from a
[3168] [3169] [3170]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 16833--16833
 []\T1/pcr/m/n/10 XWXd(X,w,k,ks,ts,dt,v,qc,nthreads=1,drop=NULL,ar.stop=-1,ar.r
ow=-1,ar.w=-1, 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 16835--16835
 []\T1/pcr/m/n/10 XWyd(X,w,y,k,ks,ts,dt,v,qc,drop=NULL,ar.stop=-1,ar.row=-1,ar.
w=-1,lt=NULL)[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 16837--16837
 []\T1/pcr/m/n/10 diagXVXd(X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,rt=
NULL)[] 
[3171]
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[]\T1/ptm/m/n/10 Negative to ig-nore. Oth-er-wise sum rows
Underfull \hbox (badness 1668) in paragraph at lines 16857--16858
[]\T1/pcr/m/n/10 (ar.stop[i-1]+1):ar.stop[i] []\T1/ptm/m/n/10 of the rows se-le
cted by []\T1/pcr/m/n/10 ar.row
[3172]
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[3174]
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 []\T1/pcr/m/n/9 ## 1. If the zero inflation rate becomes decoupled from the li
near predictor,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 17046--17046
 []\T1/pcr/m/n/9 ## it is possible for the linear predictor to be almost unboun
ded in regions[] 
[3175]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17058--17058
 []\T1/pcr/m/n/9 ## 3. Refit fixing the theta parameters at their estimated val
ues, to check we[] 
[3176] [3177] [3178]) (./nlme-pkg.tex
Chapter 25.
[3179]
Underfull \hbox (badness 1009) in paragraph at lines 84--93
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3180]
Underfull \hbox (badness 1009) in paragraph at lines 174--183
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3181] [3182] [3183] [3184] [3185]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 454--454
 []  \T1/pcr/m/n/9 lme(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
[3186] [3187]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 595--595
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 251-254 ---------------------------
---------------[] 
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 []\T1/pcr/m/n/9 # Compare an "lme" object with a "gls" object (test would be n
on-sensical!)[] 
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 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 222-225 ---------------------------
---------------[] 
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 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 352-365 ---------------------------
---------------[] 
[3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195]
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 []                  \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxil
lary fissure"),[] 
[3196]
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[]\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 http://stat.gamma.rug.nl/snijders/multilevel
.htm[]\T1/ptm/m/n/10 ', the first edi-tion of
[3197] [3198] [3199] [3200] [3201] [3202] [3203]
Underfull \hbox (badness 10000) in paragraph at lines 1626--1629
[][][]\T1/pcr/m/n/10 lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fixed.
effects.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ranef.lmList[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.ranef.lmList[][][][]\T1/ptm/m/n/10 
,
[3204]
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[]\T1/ptm/m/n/10 This method func-tion ex-tracts the co-ef-fi-cients as-so-ci-a
ted with each com-po-nent of the
[3205] [3206] [3207] [3208] [3209]
Underfull \hbox (badness 2042) in paragraph at lines 1992--1998
\T1/ptm/m/n/10 is in-ner to the []\T1/pcr/m/n/10 displayLevel []\T1/ptm/m/n/10 
group-ing fac-tor. If equal to []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 ,
[3210]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2054--2054
 []\T1/pcr/m/n/9 collapse(Pixel, collapse = 1)  # same as collapse(Pixel, colla
pse = "Dog")[] 
[3211]
Underfull \hbox (badness 1132) in paragraph at lines 2143--2145
[]\T1/ptm/m/n/10 fitted model ob-jects, from which pre-dic-tions can be ex-trac
ted us-ing the
[3212] [3213]
Underfull \hbox (badness 4168) in paragraph at lines 2254--2260
[][][]\T1/pcr/m/n/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corAR
MA[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 ,
[3214]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2279--2279
 []  \T1/pcr/m/n/9 gls(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
[3215] [3216] [3217] [3218] [3219] [3220] [3221] [3222]
Underfull \hbox (badness 10000) in paragraph at lines 2845--2849
[][][]\T1/pcr/m/n/10 corFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cor
Matrix.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 recalc.corStruct[
][][][]\T1/ptm/m/n/10 ,
[3223] [3224] [3225] [3226] [3227] [3228pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.corMatrix.corCompSymm}) has been already used, d
uplicate ignored
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  
l.3188 ...trix(cs1, covariate = 1:4, corr = FALSE)
                                                  ] [3229] [3230] [3231]
[3232] [3233] [3234]
Underfull \hbox (badness 6493) in paragraph at lines 3580--3588
[][][]\T1/pcr/m/n/10 corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corGau
s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corLin[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corSp
her[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T
1/ptm/m/n/10 ,
[3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245]
[3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256]
[3257] [3258]
Underfull \hbox (badness 10000) in paragraph at lines 5160--5164
[][][]\T1/pcr/m/n/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/p
cr/m/n/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 ,
[3259] [3260] [3261] [3262] [3263] [3264] [3265]
Underfull \hbox (badness 10000) in paragraph at lines 5592--5595
[][][]\T1/pcr/m/n/10 getGroupsFormula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 getGroups
.gls[][][][]\T1/ptm/m/n/10 ,
[3266] [3267] [3268] [3269] [3270] [3271] [3272] [3273] [3274]
Underfull \hbox (badness 2799) in paragraph at lines 6098--6104
\T1/ptm/m/n/10 covariance ma-trix, ei-ther []\T1/pcr/m/n/10 "random.effects" []
\T1/ptm/m/n/10 for the random-effects
[3275]
Underfull \hbox (badness 7133) in paragraph at lines 6159--6163
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3276]
Underfull \hbox (badness 2057) in paragraph at lines 6248--6259
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gl
sControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 glsObject[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gls[][][][]
\T1/ptm/m/n/10 ,
[3277]
Underfull \hbox (badness 10000) in paragraph at lines 6312--6314
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3278] [3279] [3280] [3281]
Underfull \hbox (badness 7133) in paragraph at lines 6560--6564
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3282]
Underfull \hbox (badness 10000) in paragraph at lines 6659--6665
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gn
lsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsObject[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 predict.gnls[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (54.78088pt too wide) in paragraph at lines 6686--6686
 []\T1/pcr/m/n/10 gnlsControl(maxIter = 50, nlsMaxIter = 7, msMaxIter = 50, min
Scale = 0.001, 
[3283]
Underfull \hbox (badness 10000) in paragraph at lines 6724--6726
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3284] [3285] [3286] [3287]
Underfull \hbox (badness 10000) in paragraph at lines 6995--7002
[][][]\T1/pcr/m/n/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gappl
y[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gsummary[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nff
GroupedData[][][][]\T1/ptm/m/n/10 ,
[3288]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7013--7013
 []                \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxilla
ry fissure" ),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7018--7018
 []\T1/pcr/m/n/9 fm1 <- lme( Orth.new )   # fixed and groups formulae extracted
 from object[] 
Underfull \hbox (badness 2875) in paragraph at lines 7040--7042
[]\T1/ptm/m/n/10 an ob-ject to be sum-ma-rized - usu-ally a []\T1/pcr/m/n/10 gr
oupedData []\T1/ptm/m/n/10 ob-ject or a
[3289] [3290] [3291]
Underfull \hbox (badness 10000) in paragraph at lines 7255--7260
[][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr
/m/n/10 Initialize.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initi
alize.glsStruct[][][][]\T1/ptm/m/n/10 ,
[3292] [3293] [3294]
Underfull \hbox (badness 1997) in paragraph at lines 7406--7414
[]\T1/ptm/m/n/10 an op-tional list with con-trol pa-ram-e-ters for the ini-tial
-iza-tion and op-ti-
Underfull \hbox (badness 2205) in paragraph at lines 7406--7414
\T1/ptm/m/n/10 miza-tion al-go-rithms used in []\T1/pcr/m/n/10 lme[]\T1/ptm/m/n
/10 . De-faults to []\T1/pcr/m/n/10 list(niterEM=20,
Underfull \hbox (badness 3118) in paragraph at lines 7429--7432
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initializ
e.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.varFunc[][][][]\T1/ptm/m/
n/10 ,
[3295] [3296] [3297]
Underfull \hbox (badness 3354) in paragraph at lines 7645--7647
[]\T1/ptm/m/n/10 linear model co-ef-fi-cients, only present when []\T1/pcr/m/n/
10 which []\T1/ptm/m/n/10 is not equal to
[3298] [3299] [3300] [3301] [3302] [3303] [3304] [3305]
Underfull \hbox (badness 10000) in paragraph at lines 8173--8190
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lm
e.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme.groupedData[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 lmeObject[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 8173--8190
[][][]\T1/pcr/m/n/10 lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmL
ist[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 plot.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
predict.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qqnorm.lme[][][][]\T1/
ptm/m/n/10 ,
[3306]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 8216--8216
 []    \T1/pcr/m/n/10 subset, method, na.action, control, contrasts, keep.data 
= TRUE)[] 
Underfull \hbox (badness 1642) in paragraph at lines 8225--8247
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
[3307] [3308] [3309] [3310]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 8490--8490
 []\T1/pcr/m/n/10 lmeControl(maxIter = 50, msMaxIter = 50, tolerance = 1e-6, ni
terEM = 25, 
[3311]
Underfull \hbox (badness 10000) in paragraph at lines 8538--8540
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
Overfull \hbox (9.78043pt too wide) in paragraph at lines 8582--8582
 []\T1/pcr/m/n/9 # request that information on the evolution of the ms iteratio
ns be printed[] 
[3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322]
[3323]
Underfull \hbox (badness 10000) in paragraph at lines 9345--9352
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 gls[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.corStruct[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9356--9356
 []\T1/pcr/m/n/9 fm1 <- lme(distance ~ Sex * age, Orthodont, random = ~ age, me
thod = "ML") 
[3324] [3325] [3326] [3327] [3328]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9707 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.9707 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                   [3329]
Underfull \hbox (badness 10000) in paragraph at lines 9727--9730
[]\T1/ptm/m/n/10 a ma-trix, or list of ma-tri-ces, with the same di-men-sions a
s
Underfull \hbox (badness 3108) in paragraph at lines 9771--9774
[]\T1/ptm/m/n/10 a ma-trix with the new val-ues to be as-signed to the positive
-definite
Underfull \hbox (badness 2521) in paragraph at lines 9771--9774
\T1/ptm/m/n/10 ma-trix rep-re-sented by []\T1/pcr/m/n/10 object[]\T1/ptm/m/n/10
 . Must have the same di-men-sions as
[3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339] [3340]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10451--10451
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights, 
[3341]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10455--10455
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
Underfull \hbox (badness 1596) in paragraph at lines 10484--10510
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[3342] [3343]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10638--10638
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
[3344] [3345] [3346]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 10789--10789
 []            \T1/pcr/m/n/10 opt = c("nlminb", "nlm"), natural = TRUE, sigma =
 NULL, ...)[] 
Underfull \hbox (badness 2213) in paragraph at lines 10800--10805
[]\T1/ptm/m/n/10 maximum num-ber of it-er-a-tions for [][][]\T1/pcr/m/n/10 nlmi
nb[][][] []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 iter.max[]\T1/ptm/m/n/10 ) or the [
][][]\T1/pcr/m/n/10 nlm[][][]
Underfull \hbox (badness 6961) in paragraph at lines 10822--10826
[]\T1/ptm/m/n/10 a log-i-cal value passed as the []\T1/pcr/m/n/10 trace []\T1/p
tm/m/n/10 to [][][]\T1/pcr/m/n/10 nlminb[][][](.., control=
[3347]
Underfull \hbox (badness 10000) in paragraph at lines 10841--10843
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3348] [3349] [3350] [3351]
Overfull \hbox (96.18033pt too wide) in paragraph at lines 11137--11137
 []\T1/pcr/m/n/9 cfm1 <- confint(fm1) # via profiling each % FIXME: only *one* 
message instead of one *each*[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 11138--11138
 []\T1/pcr/m/n/9 mat.class <- class(matrix(1)) # ("matrix", "array") for R >= 4
.0.0;  ("matrix" in older R)[] 
[3352] [3353] [3354] [3355] [3356] [3357]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11528--11528
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3358] [3359] [3360] [3361] [3362] [3363]
Underfull \hbox (badness 6268) in paragraph at lines 11915--11925
[][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdMatrix[][][][]\T1/ptm/m/n/10 ,
[3364] [3365] [3366] [3367]
Underfull \hbox (badness 10000) in paragraph at lines 12176--12182
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 coef.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 pdConstruct[][][][]\T1/ptm/m/n/10 ,
[3368] [3369] [3370] [3371] [3372]
Underfull \hbox (badness 6876) in paragraph at lines 12498--12500
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 value []\T1/ptm/m/n/10 is an \T1/ptm/m/it/
10 ini-tial-ized []\T1/pcr/m/n/10 pdMat []\T1/ptm/m/n/10 ob-ject, []\T1/pcr/m/n
/10 object []\T1/ptm/m/n/10 will be con-structed from
[3373] [3374]
Underfull \hbox (badness 2452) in paragraph at lines 12654--12661
[][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
pdNatural[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdSymm[][][][]\T1/ptm/m/
n/10 , [][][]\T1/pcr/m/n/10 reStruct[][][][]\T1/ptm/m/n/10 ,
[3375]
Underfull \hbox (badness 10000) in paragraph at lines 12720--12726
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pdMatrix.reStruct[][][][]\T1/ptm/m/n/10 ,
[3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 13309--13309
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3385] [3386] [3387] [3388] [3389]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13674--13674
 []\T1/pcr/m/n/9 plot(fm1, resid(., type = "pool") ~ fitted(.) | Sex, abline = 
0, id = 0.05)[] 
[3390]
Underfull \hbox (badness 10000) in paragraph at lines 13701--13704
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nffGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3391]
Underfull \hbox (badness 1838) in paragraph at lines 13744--13751
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/pcr/m/
n/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/pcr/m/n/10 inner
Underfull \hbox (badness 3713) in paragraph at lines 13744--13751
[]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 innerGroups []\T1/ptm/m/n/10 are non-[]\T1
/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 , a leg-end for the dif-fer-ent []\T1/pcr/m/n/
10 inner
Overfull \hbox (12.78088pt too wide) in paragraph at lines 13801--13801
 []\T1/pcr/m/n/10 plot(x, outer, inner, innerGroups, xlab, ylab, strip, aspect,
 panel,[] 
[3392]
Underfull \hbox (badness 10000) in paragraph at lines 13808--13811
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nfnGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
Underfull \hbox (badness 2469) in paragraph at lines 13808--13811
[]\T1/pcr/m/n/10 groupedData []\T1/ptm/m/n/10 ob-ject with a nu-meric pri-mary 
co-vari-ate and a sin-gle
[3393]
Underfull \hbox (badness 10000) in paragraph at lines 13916--13919
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nmGrouped
Data[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3394] [3395]
Underfull \hbox (badness 10000) in paragraph at lines 14010--14012
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 c
ollapse.groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nfnGroupe
dData[][][][]\T1/ptm/m/n/10 ,
[3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 14534--14534
 []\T1/pcr/m/n/9 newOrth <- data.frame(Sex = c("Male","Male","Female","Female",
"Male","Male"),[] 
[3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412]pdfTeX warning (e
xt4): destination with the same identifier (name{Rfn.random.effects}) has been 
already used, duplicate ignored
<to be read again> 
                   \relax 
l.15187 ...Extract Random Effects}{random.effects}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.random.effects.1}) has been already us
ed, duplicate ignored
<to be read again> 
                   \relax 
l.15187 ...Extract Random Effects}{random.effects}
                                                   [3413] [3414] [3415]
[3416] [3417] [3418] [3419] [3420] [3421] [3422]
Underfull \hbox (badness 2126) in paragraph at lines 15826--15830
[]\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199
7). Phar-ma-coki-net-
[3423]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 15834--15834
 []\T1/pcr/m/n/9 plot(Remifentanil, type = "l", lwd = 2) # shows the 65 patient
s\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 remi profiles 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 15853--15853
 []    \T1/pcr/m/n/9 stopifnot(all.equal(BSA, Wt^{0.425} * Ht^{0.725} * 0.00718
4, tol = 1.5e-5),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 15854--15854
 []              \T1/pcr/m/n/9 all.equal(LBM, LBMfn(Wt, Ht, Sex),              
   tol = 7e-7)[] 
[3424]
Underfull \hbox (badness 1009) in paragraph at lines 15884--15893
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3425] [3426]
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 []          \T1/pcr/m/n/10 type = c("response", "pearson", "normalized"), asLi
st = FALSE, ...)[] 
[3427] [3428] [3429] [3430] [3431]
Underfull \hbox (badness 10000) in paragraph at lines 16366--16372
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 l
me[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 solve.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 summary.reStruct[][][][]\T1/ptm/m/n/10 ,
[3432]
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 []         \T1/pcr/m/n/10 method = c("REML", "ML"), niterEM = c(40, 200), useG
en, ...)[] 
[3433] [3434] [3435] [3436] [3437] [3438] [3439]
Underfull \hbox (badness 1728) in paragraph at lines 16885--16888
[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
[3440] [3441] [3442] [3443] [3444]
Underfull \hbox (badness 1803) in paragraph at lines 17219--17228
\T1/pcr/m/n/10 of an Identity" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdIdent[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Positive-Definite,
Underfull \hbox (badness 10000) in paragraph at lines 17219--17228
\T1/pcr/m/n/10 Natural Parametrization" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 p
dNatural[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General
Underfull \hbox (badness 7888) in paragraph at lines 17219--17228
\T1/pcr/m/n/10 Positive-Definite" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdSymm[
]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 data.class(object)
[3445]
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[]\T1/pcr/m/n/10 "Constant plus power of variance
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[]\T1/pcr/m/n/10 "Constant plus proportion of variance
[3446] [3447] [3448] [3449]
Underfull \hbox (badness 10000) in paragraph at lines 17541--17549
[][][]\T1/pcr/m/n/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varCo
nstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varConstProp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varIdent[][][][]\T1
/ptm/m/n/10 ,
[3450] [3451] [3452] [3453]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 17813--17813
 []\T1/pcr/m/n/9 # Generate some synthetic data using the two-component error m
odel and use 
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 []\T1/pcr/m/n/9 # overparameterisation in the case of a constant term in the v
ariance function[] 
[3454] [3455] [3456] [3457] [3458] [3459]
Underfull \hbox (badness 10000) in paragraph at lines 18251--18261
[][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rLin[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18251--18261
[][][]\T1/pcr/m/n/10 Variogram.corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogr
am.corSpher[][][][]\T1/ptm/m/n/10 ,
[3460]
Underfull \hbox (badness 3579) in paragraph at lines 18289--18294
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3461]
Underfull \hbox (badness 3579) in paragraph at lines 18353--18358
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3462]
Underfull \hbox (badness 3579) in paragraph at lines 18416--18421
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3463]
Underfull \hbox (badness 1577) in paragraph at lines 18477--18479
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 "[][]corR
atio[][][]"[]\T1/ptm/m/n/10 , rep-re-sent-ing an Ra-tio-nal
Underfull \hbox (badness 3579) in paragraph at lines 18479--18484
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3464]
Underfull \hbox (badness 3579) in paragraph at lines 18542--18547
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
Underfull \hbox (badness 10000) in paragraph at lines 18575--18584
[][][]\T1/pcr/m/n/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Va
riogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.default[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18575--18584
[][][]\T1/pcr/m/n/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 Variogram.corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rRatio[][][][]\T1/ptm/m/n/10 ,
[3465]
Underfull \hbox (badness 3579) in paragraph at lines 18614--18619
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3466] [3467]
Underfull \hbox (badness 1009) in paragraph at lines 18760--18769
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3468] [3469]
Underfull \hbox (badness 1009) in paragraph at lines 18892--18901
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3470] [3471] [3472] [3473] [3474] [3475] [3476] [3477] [3478]) (./nnet-pkg.tex
Chapter 26.
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.multinom.1}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                   [3479]
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 []         \T1/pcr/m/n/10 contrasts = NULL, Hess = FALSE, summ = 0, censored =
 FALSE,[] 
[3480] [3481] [3482]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 371--371
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3483]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 428--428
 []\T1/pcr/m/n/9 targets <- matrix(c(rep(c(1,0,0),50), rep(c(0,1,0),50), rep(c(
0,0,1),50)),[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 431--431
 []\T1/pcr/m/n/9 ir1 <- nnet(ir[samp,], targets[samp,], size=2, rang=0.1, decay
=5e-4, maxit=200)[] 
[3484] [3485]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 511--511
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3486]) (./rpart-pkg.tex
Chapter 27.
[3487] [3488] [3489] [3490]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 324--324
 []\T1/pcr/m/n/10 labels(object, digits = 4, minlength = 1L, pretty, collapse =
 TRUE, ...)[] 
[3491] [3492] [3493] [3494]
Underfull \hbox (badness 1442) in paragraph at lines 592--598
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , the leaf nodes wil
l be at the hor-i-zon-tal plot co-or-di-nates of
[3495] [3496]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 738--738
 []     \T1/pcr/m/n/10 filename = paste(deparse(substitute(tree)), ".ps", sep =
 ""),[] 
Underfull \hbox (badness 10000) in paragraph at lines 771--775
[]\T1/ptm/m/n/10 Logical. If []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault),
 adds to the la-bel
Underfull \hbox (badness 1142) in paragraph at lines 771--775
\T1/pcr/m/n/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method [
]\T1/pcr/m/n/10 class[]\T1/ptm/m/n/10 , \T1/pcr/m/n/10 n
[3497] [3498] [3499]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 915--915
 []\T1/pcr/m/n/9 predict(fit, type = "matrix") # level number, class frequencie
s, probabilities[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 934--934
 []\T1/pcr/m/n/10 print(x, minlength = 0, spaces = 2, cp, digits = getOption("d
igits"),[] 
[3500] [3501] [3502] [3503]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 1180--1180
 []\T1/pcr/m/n/10 rpart(formula, data, weights, subset, na.action = na.rpart, m
ethod, 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1181--1181
 []      \T1/pcr/m/n/10 model = FALSE, x = FALSE, y = TRUE, parms, control, cos
t, ...)[] 
Underfull \hbox (badness 2846) in paragraph at lines 1243--1245
[]\T1/ptm/m/n/10 a list of op-tions that con-trol de-tails of the []\T1/pcr/m/n
/10 rpart []\T1/ptm/m/n/10 al-go-rithm. See
[3504]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1287--1287
 []\T1/pcr/m/n/9 par(mfrow = c(1,2), xpd = NA) # otherwise on some devices the 
text is clipped[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 1303--1303
 []\T1/pcr/m/n/10 rpart.control(minsplit = 20, minbucket = round(minsplit/3), c
p = 0.01, 
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1304--1304
 []              \T1/pcr/m/n/10 maxcompete = 4, maxsurrogate = 5, usesurrogate 
= 2, xval = 10,[] 
[3505] [3506] [3507] [3508] [3509] [3510] [3511]
Underfull \hbox (badness 1565) in paragraph at lines 1760--1763
[]\T1/ptm/m/n/10 the ploidy sta-tus of the tu-mor, from flow cy-tom-e-try. Val-
ues are `[]\T1/pcr/m/n/10 diploid[]\T1/ptm/m/n/10 ',
[3512]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1854--1854
 []     \T1/pcr/m/n/10 pretty = NULL, digits = getOption("digits") - 3, use.n =
 FALSE,[] 
[3513] [3514] [3515]) (./spatial-pkg.tex [3516]
Chapter 28.
[3517] [3518] [3519] [3520] [3521] [3522]
Underfull \hbox (badness 10000) in paragraph at lines 423--427
[3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533]
[3534] [3535]) (./survival-pkg.tex [3536]
Chapter 29.
[3537] [3538]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 173--173
 []\T1/pcr/m/n/9 aareg(formula = Surv(time, status) ~ age + sex + ph.ecog, data
 = lung, nmin = 1[] 
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 []\T1/pcr/m/n/9 ## Not run: lines(lfit2[4], col=2)  # Nearly the same, until t
he last point[] 
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 []\T1/pcr/m/n/9 # Chronic Granuomatous Disease.  See section 8.5 of Therneau a
nd Grambsch.[] 
[3539] [3540]
Underfull \hbox (badness 6412) in paragraph at lines 284--286
[]\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as 
long as
[3541] [3542]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.aml}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                   [3543]
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(futime, fustat) ~ resid.ds *rx + ecog.ps, da
ta = ovarian) 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 487--487
 []\T1/pcr/m/n/9 fit2 <- coxph(Surv(futime, fustat) ~ resid.ds +rx + ecog.ps, d
ata=ovarian)[] 
[3544]
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 []    \T1/pcr/m/n/10 survreg(Surv(time, status) ~ age + sex + factor(ph.ecog),
 lung)[] 
[3545] [3546] [3547] [3548]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 773--773
 []\T1/pcr/m/n/9 py <- pseudo(survfit(Surv(time, status) ~1, lung), time=730) #
2 year survival 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 796--796
 []    \T1/pcr/m/n/10 method =c("Prentice","SelfPrentice","LinYing","I.Borgan",
"II.Borgan"),[] 
[3549] [3550]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 939--939
 []   \T1/pcr/m/n/9 subcoh = ~subcohort, id=~seqno, stratum=~instit, cohort.siz
e=stratsizes,[] 
[3551] [3552] [3553]
Underfull \hbox (badness 1097) in paragraph at lines 1110--1112
[]\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi
al and negative-binomial data.
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1130--1130
 []\T1/pcr/m/n/9 ppois(4, 10.24153)     #chance of seeing 4 or fewer events wit
h large rate[] 
[3554] [3555]
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 []\T1/pcr/m/n/9 ## Not run: clogit(case ~ spontaneous + induced + strata(strat
um), data=infert) 
[3556]
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 []\T1/pcr/m/n/9 marginal.model <- coxph(Surv(time, status) ~ rx, data= rats, c
luster=litter, 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1312 ...erapy for Stage B/C colon cancer}{colon}
                                                   [3557]
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 []  \T1/pcr/m/n/10 influence=0, ranks = FALSE, reverse=FALSE, timefix=TRUE, ke
epstrata=10, ...)[] 
[3558] [3559] [3560]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1638--1638
 []\T1/pcr/m/n/9 options(na.action = na.exclude)   # predict all 1384 obs, incl
uding missing[] 
[3561] [3562]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1732--1732
 []\T1/pcr/m/n/10 cox.zph(fit, transform="km", terms=TRUE, singledf=FALSE, glob
al=TRUE) 
[3563] [3564] [3565] [3566]
Underfull \hbox (badness 10000) in paragraph at lines 2048--2063
[]\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f
ol-low the ad-vice of
Underfull \hbox (badness 7486) in paragraph at lines 2048--2063
\T1/ptm/m/n/10 some cod-ing guides and prepend []\T1/pcr/m/n/10 survival:: []\T
1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the spe-
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\T1/ptm/m/n/10 cial terms, e.g., []\T1/pcr/m/n/10 survival::coxph(survival:Surv
(time, status) ~ age +
[3567]
Underfull \hbox (badness 3861) in paragraph at lines 2143--2147
[][][]\T1/pcr/m/n/10 coxph.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
coxphms.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxph.control[][][]
[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cluster[][][][]\T1/ptm/m/n/10 , [][][]\
T1/pcr/m/n/10 strata[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Surv[][][][]\
T1/ptm/m/n/10 ,
[3568]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2198--2198
 []\T1/pcr/m/n/10 iter.max = 20, toler.inf = sqrt(eps), outer.max = 10, timefix
=TRUE)[] 
[3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576] [3577]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2825--2825
 [] \T1/pcr/m/n/9 [1] "extreme"     "logistic"    "gaussian"    "weibull"     "
exponential"[] 
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 []\T1/pcr/m/n/10 finegray(formula, data, weights, subset, na.action= na.pass, 
etype, 
[3578] [3579] [3580] [3581]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3110--3110
 []\T1/pcr/m/n/10 frailty.t(x, sparse = (nclass > 5), theta, df, eps = 1e-05, t
df = 5,[] 
[3582] [3583] [3584] [3585] [3586]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3451--3451
 []\T1/pcr/m/n/9 kfit <- coxph(Surv(time, status)~ age + sex + disease + frailt
y(id), kidney) 
[3587]
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 []           \T1/pcr/m/n/9 factor(c(0, 1, 2,1,0,2), 0:2, c("censored", "progre
ssion", "death")))[] 
Underfull \hbox (badness 1389) in paragraph at lines 3500--3502
[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
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 []        \T1/pcr/m/n/10 conf.type = c("log", "log-log", "plain", "logit", "ar
csin"),[] 
[3588] [3589]
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 []                 \T1/pcr/m/n/9 rmap=list(sex=sex, age=age*365.35, year=as.Da
te(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 1979/01/01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3590] [3591]
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 [] [] 
[3592] [3593]
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 []\T1/pcr/m/n/9 # surprise) but their rates of conversion to PCM are essential
ly the same.[] 
[3594] [3595] [3596] [3597] [3598] [3599] [3600]
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 []                    \T1/pcr/m/n/9 entry.dt = as.Date(paste("2011", 1:10, "5"
, sep=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 -\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3601] [3602]
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 []\T1/pcr/m/n/9 tdata <- data.frame(x= lung$age, y = 10*log(lung$age-35) + rno
rm(228, 0, 2))[] 
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 []\T1/pcr/m/n/9 knots <- unlist(attributes(fit1$model[[2]])[c(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 Boundary.knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , \TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )])[] 
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 []\T1/pcr/m/n/9 unname(coef(fit1)[-1] - coef(fit1)[1])  # differences: yhat[2:
4] - yhat[1][] 
[3603]
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[3605] [3606] [3607] [3608] [3609]
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 [] \T1/pcr/m/n/10 pch=3, col=1, lty=1, lwd=1, cex=1, log=FALSE, xscale=1, ysca
le=1,[] 
[3610] [3611] [3612]
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 []\T1/pcr/m/n/10 se.fit=FALSE, na.action=na.pass, terms=names(object$assign), 
collapse,[] 
[3613]
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 []\T1/pcr/m/n/9 mresid <- (lung$status-1) - predict(fit, type=\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 expected\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ) #Martingale resid[] 
[3614]
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 []  \T1/pcr/m/n/9 predict(fit, reference="sample") + sum(coef(fit) * fit$means
, na.rm=TRUE)[] 
[3615]
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 []\T1/pcr/m/n/9 pct <- 1:98/100   # The 100th percentile of predicted survival
 is at +infinity[] 
[3616]
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 []  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars"), expand=FALSE
, ...)[] 
[3617]
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[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.survfit"[]\T1/pt
m/m/n/10 , which is the re-sult of the
[3618] [3619]
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 []\T1/pcr/m/n/10 pseudo(fit, times, type, addNA=TRUE, data.frame=FALSE, minus1
=FALSE, ...) 
[3620] [3621]
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 []\T1/pcr/m/n/9 rhat <- predict(rfit, newdata=expand.grid(ph.ecog=0:3, sex=1:2
), se.fit=TRUE)[] 
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 []\T1/pcr/m/n/9 # the estimate for ph.ecog=3 is very unstable (n=1), pseudoval
ues smooth it.[] 
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 []\T1/pcr/m/n/9 # In all the above we should be using the robust variance, e.g
., svyglm, but[] 
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 []\T1/pcr/m/n/10 pspline(x, df=4, theta, nterm=2.5 * df, degree=3, eps=0.1, me
thod, 
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 []   \T1/pcr/m/n/10 Boundary.knots=range(x), intercept=FALSE, penalty=TRUE, co
mbine, ...)[] 
[3622] [3623] [3624]
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 []  \T1/pcr/m/n/10 py <- pyears(futime ~ rx, rmap=list(age=age, sex=sex, year=
entry.dt),[] 
[3625]
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 []\T1/pcr/m/n/9 pfit <- pyears(Surv(ptime/365.25, pstat) ~ temp.yr + temp.age 
+ sex,  mgus,[] 
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 []\T1/pcr/m/n/9 fit1 <- pyears(Surv(stop/365.25, event) ~ cut(age + 48, c(0,50
,60,70,100)) +[] 
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 []\T1/pcr/m/n/9 fit2 <- pyears(Surv(stop/365.25, event) ~ tcut(age + 48, c(0,5
0,60,70,100)) +[] 
[3626] [3627] [3628] [3629]
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 []       \T1/pcr/m/n/10 collapse=FALSE, weighted= (type %in% c("dfbeta", "dfbe
tas")), ...)[] 
[3633] [3634] [3635]
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 []\T1/pcr/m/n/10 residuals(object, type=c("response", "deviance","dfbeta","dfb
etas",[] 
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[]\T1/pcr/m/n/10 "dfbetas"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "working"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "ldcase"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lsresp
"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ldshape"[]\T1/ptm/m/n/10 , and
[3636] [3637] [3638] [3639]
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 []\T1/pcr/m/n/9 lfit1 <- survreg(Surv(time, status) ~ age + ridge(ph.ecog, the
ta=5), lung)[] 
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 []\T1/pcr/m/n/9 lfit2 <- survreg(Surv(time, status) ~ sex + ridge(age, ph.ecog
, theta=1), lung)[] 
[3640] [3641] [3642]
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 []\T1/pcr/m/n/10 rttright(formula, data, weights, subset, na.action, times, id
, timefix = TRUE) 
[3643]
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 []\T1/pcr/m/n/9 cdf <- cdf[!duplicated(aml$time[index], fromLast=TRUE)]  # rem
ove duplicate times[] 
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 []\T1/pcr/m/n/9 wt2 <- rttright(Surv(dtime, death) ~ hormon, rotterdam, times=
 365*c(3, 5))[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7312 ...ata from a soldering experiment}{solder}
                                                   [3644]
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[3645]
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 []\T1/pcr/m/n/10 statefig(layout, connect, margin = 0.03, box = TRUE, cex = 1,
 col = 1, 
[3646] [3647] [3648] [3649] [3650]
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 []\T1/pcr/m/n/10 event = TRUE, pyears = TRUE, expected = TRUE, rate = FALSE, r
r =expected,[] 
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 []\T1/pcr/m/n/10 ci.r = FALSE, ci.rr = FALSE, totals=FALSE, legend = TRUE, vli
ne = FALSE,[] 
[3651] [3652] [3653] [3654] [3655]
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 []    \T1/pcr/m/n/10 type=c(\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 right\TS1/pcr/m/n/
10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 left\TS1/pcr/m/n/10 '\T1/p
cr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval\TS1/pcr/m/n/10 '\T1/pcr/m/
n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 counting\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 
, \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval2\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \T
S1/pcr/m/n/10 '\T1/pcr/m/n/10 mstate\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ),[] 
[3656] [3657] [3658]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 median[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10
 quantile []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 meth-ods 
first con-struct a sur-vival curve us-ing
[3659] [3660]
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 []\T1/pcr/m/n/10 survcheck(formula, data, subset, na.action, id, istate, istat
e0="(s0)", 
[3661] [3662]
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 []\T1/pcr/m/n/10 survcondense(formula, data, subset, weights, na.action= na.pa
ss, id, 
[3663] [3664] [3665]
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 []                  \T1/pcr/m/n/9 rmap= list(age=(accept.dt - birth.dt), sex=1
, year=accept.dt),[] 
[3666]
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 []        \T1/pcr/m/n/10 method=c("ederer", "hakulinen", "conditional", "indiv
idual.h",[] 
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[]\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre
-dicted sur-vival
[3667]
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 []                      \T1/pcr/m/n/10 rmap = list(year=entry.dt, age=(birth.d
t-entry.dt)),[] 
[3668]
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 []\T1/pcr/m/n/9 summary(fit1, times=1:10*182.5, scale=365) #expected survival 
by 1/2 years[] 
[3669] [3670] [3671]
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[][][]\T1/pcr/m/n/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 survfit.object[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.survfit[][][][]\T1/ptm/m/n/10 
,
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 []        \T1/pcr/m/n/10 se.fit=TRUE, conf.int=.95, individual=FALSE, stype=2,
 ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
[3672]
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 []        \T1/pcr/m/n/10 se.fit=FALSE, conf.int=.95, individual=FALSE, stype=2
, ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
[3673] [3674]
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 []        \T1/pcr/m/n/10 stype=1, ctype=1, id, cluster, robust, istate, timefi
x=TRUE,[] 
[3675] [3676]
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\T1/pcr/m/n/10 ctype=1[]\T1/ptm/m/n/10 , "fleming-harrington" which is equiv-a-
lent to []\T1/pcr/m/n/10 stype=2,
[3677] [3678]
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 []\T1/pcr/m/n/9 #  There are no interval censored subjects, only left-censored
 (status=3),[] 
[3679] [3680] [3681] [3682] [3683]
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 []\T1/pcr/m/n/10 survfitcoxph.fit(y, x, wt, x2, risk, newrisk, strata, se.fit,
 survtype, 
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[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
[3684]
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 []\T1/pcr/m/n/10 survConcordance(formula, data, weights, subset, na.action) # 
use concordance 
[3685] [3686]
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\T1/ptm/m/n/10 it is as-sumed to name an el-e-ment from [][][]\T1/pcr/m/n/10 su
rvreg.distributions[][][][]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 These in-clude []\T1/pcr/m/n/10 "weibull"[]\T1/ptm/m/n/10 , []\T
1/pcr/m/n/10 "exponential"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "gaussian"[]\T1/p
tm/m/n/10 ,
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[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 ,[]\T1/pcr/m/n/10 "lognormal" []\T1
/ptm/m/n/10 and []\T1/pcr/m/n/10 "loglogistic"[]\T1/ptm/m/n/10 . Oth-er-wise, i
t is
[3687] [3688]
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 []\T1/pcr/m/n/9 # There are multiple ways to parameterize a Weibull distributi
on. The survreg[] 
[3689] [3690]
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 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3691] [3692]
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 []                            \T1/pcr/m/n/9 temp/pi, -2 *x*temp, 2*temp^2*(4*x
^2*temp -1))[] 
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 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3693] [3694] [3695]
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 []\T1/pcr/m/n/9 pfit2 <- pyears(Surv(years, death) ~ fgrp + agegrp, scale =100
0, data=test)[] 
[3696] [3697]
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 []\T1/pcr/m/n/9 # The first data set contains data on 312 subjects in a clinic
al trial plus[] 
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 []\T1/pcr/m/n/9 # 106 that agreed to be followed off protocol, the second data
 set has data[] 
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 []               \T1/pcr/m/n/9 protime = tdc(day, protime), alk.phos = tdc(day
, alk.phos))[] 
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(tstart, tstop, endpt==2) ~ protime + log(bil
i), data=pbc2)[] 
[3698] [3699] [3700] [3701] [3702] [3703] [3704]
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 []\T1/pcr/m/n/10 levels, test = c("global", "trend", "pairwise"), predict = "l
inear",[] 
[3705] [3706] [3707]) [3708]
No file fullrefman.ind.
(./fullrefman.aux)
Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.
 )
(see the transcript file for additional information)pdfTeX warning (dest): name
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Chapter 1.
[3] [4]
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[]\T1/ptm/m/n/10 the small-est pos-i-tive floating-point num-ber []\T1/pcr/m/n/
10 x []\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 + x != 1[]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 It equals []\T1/pcr/m/n/10 double.base ^ ulp.digits []\T1/ptm/m/
n/10 if ei-ther []\T1/pcr/m/n/10 double.base []\T1/ptm/m/n/10 is
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\T1/ptm/m/n/10 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0; oth
-er-wise, it is []\T1/pcr/m/n/10 (double.base ^
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/pcr/m/n/10 x [
]\T1/ptm/m/n/10 such that []\T1/pcr/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It
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\T1/ptm/m/n/10 equals []\T1/pcr/m/n/10 double.base ^ double.neg.ulp.digits []\T
1/ptm/m/n/10 if []\T1/pcr/m/n/10 double.base
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[]\T1/ptm/m/n/10 is 2 or []\T1/pcr/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0
; oth-er-wise, it is []\T1/pcr/m/n/10 (double.base
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\T1/pcr/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/p
cr/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As
[5]
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[]\T1/ptm/m/n/10 the num-ber of \T1/ptm/m/it/10 bytes \T1/ptm/m/n/10 in the C [
]\T1/pcr/m/n/10 time_t []\T1/ptm/m/n/10 type: a 64-bit []\T1/pcr/m/n/10 time_t 
[]\T1/ptm/m/n/10 (value
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[]\T1/pcr/m/n/10 8[]\T1/ptm/m/n/10 ) is much pre-ferred these days. Note that t
his is the type used by
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[]\T1/pcr/m/n/10 *.exponent[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 *.min.exp[]\T1/p
tm/m/n/10 , and []\T1/pcr/m/n/10 *.max.exp[]\T1/ptm/m/n/10 , com-puted en-tirel
y anal-o-gously to their
[6] [7]
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[][][]\T1/pcr/m/n/10 R.version[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 
Sys.info[][][] []\T1/ptm/m/n/10 give more de-tails about the OS. In par-tic-u-l
ar,
[8] [9] [10]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
[11]
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gnore.case = TRUE)[] 
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[15]
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 []\T1/pcr/m/n/9 all.equal(tan(d45), one, tolerance = 0, scale = 1+(-2:2)/1e9) 
# "absolute"[] 
[16]
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 []\T1/pcr/m/n/9 mtext(paste("mean(all.equal(x1, x2*(1 + eps_k))) {100 x} Mean 
rel.diff.=",[] 
[17]
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ALSE) 
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[]\T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion, where \T1/phv/m/n/10 R \T1/p
tm/m/n/10 uses ``floored'' in-te-ger di-vi-sion, i.e., []\T1/pcr/m/n/10 q <- x 
%/% y :=
[26]
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[]\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . orac
le . com / cd / E19957-[]01 / 806-[]3568 / ncg _
[27] [28] [29] [30]
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 []              \T1/pcr/m/n/10 cut.names = FALSE, col.names = names(x), fix.em
pty.names = TRUE,[] 
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[]\T1/ptm/m/n/10 logical or in-te-ger; in-di-cat-ing if col-umn names with more
 than 256 (or
[32]
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[]\T1/ptm/m/n/10 Direct calls to []\T1/pcr/m/n/10 as.data.frame.<class>() []\T1
/ptm/m/n/10 are still pos-si-ble (base pack-age!), for 12
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\T1/ptm/m/n/10 atomic base classes, but will dep-re-cated (al-ready vis-i-bly b
y set-ting en-vi-ron-ment vari-
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\T1/ptm/m/n/10 able []\T1/pcr/m/n/10 _R_CHECK_AS_DATA_FRAME_EXPLICIT_METHOD_ []
\T1/ptm/m/n/10 to non-empty) where call-ing
[33] [34] [35]
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 []\T1/pcr/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[36]
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[]\T1/ptm/m/n/10 If [][][]\T1/pcr/m/n/10 is.object[][][](x) []\T1/ptm/m/n/10 is
 true and it has a [][][]\T1/pcr/m/n/10 class[][][] []\T1/ptm/m/n/10 for which 
an
[37] [38] [39] [40]
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ss "POSIXlt"[] 
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[]\T1/ptm/m/n/10 There are no re-stric-tions on the name given as []\T1/pcr/m/n
/10 x[]\T1/ptm/m/n/10 : it can be a non-syntactic name (see
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[]\T1/pcr/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/pcr/m/n/10 balancePOSIXlt(x,
[53] [54] [55] [56]
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 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", nus), col = nus + 2, 
lwd = 1, bty="n")[] 
[57]
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 []\T1/pcr/m/n/9 plot(range(x0), c(1e-40, 1), log = "xy", xlab = "x", ylab = ""
, type = "n",[] 
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 []     \T1/pcr/m/n/9 main = "Bessel Functions  J_nu(x)  near 0\n log - log  sc
ale") ; axis(2, at=1)[] 
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 "", type = "n",[] 
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ale") ; axis(2, at=1)[] 
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the name of a C func-tion, or an 
ob-ject
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\T1/ptm/m/n/10 of class []\T1/pcr/m/n/10 "[][]NativeSymbolInfo[][][]"[]\T1/ptm/
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r
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f")))[] 
[73]
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[]\T1/ptm/m/n/10 is ICU avail-able for col-la-tion? See the help on [][]Com-par
-i-son[][][] and
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[]\T1/ptm/m/n/10 (generalized) vec-tors or ma-tri-ces. These can be given as na
med ar-gu-
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[]\T1/ptm/m/n/10 (only for data frame method:) log-i-cal in-di-cat-ing if uniqu
e and valid
[77] [78] [79]
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 []\T1/pcr/m/n/9 rbind(1:4, c = 2, "a++" = 10, dd, deparse.level = 1) # 3 rowna
mes (default)[] 
[80] [81] [82]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[83] [84] [85] [86] [87] [88] [89] [90]
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[]\T1/ptm/m/n/10 When a generic func-tion []\T1/pcr/m/n/10 fun []\T1/ptm/m/n/10
 is ap-plied to an ob-ject with class at-tribute []\T1/pcr/m/n/10 c("first",
[91] [92] [93] [94] [95] [96] [97] [98]
Underfull \hbox (badness 1796) in paragraph at lines 6571--6579
[]\T1/ptm/m/n/10 Collation of char-ac-ter strings is a com-plex topic. For an i
n-tro-duc-tion see [][]$\T1/pcr/m/n/10 https : / /
[99] [100] [101]
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 []\T1/pcr/m/n/9 ## The exact result of this *depends* on the platform, compile
r, math-library:[] 
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 []\T1/pcr/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6771--6771
 []\T1/pcr/m/n/9 showC(NpNA)# but not always is {shows  \TS1/pcr/m/n/9 '\T1/pcr
/m/n/9 (R = NaN, I = NA)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 on some platforms}[] 
[102] [103]
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[]\T1/ptm/m/n/10 User in-ter-rupts sig-nal a con-di-tion of class []\T1/pcr/m/n
/10 interrupt []\T1/ptm/m/n/10 that in-her-its di-rectly from class
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[]\T1/ptm/m/n/10 Restarts are used for es-tab-lish-ing re-cov-ery pro-to-cols. 
They can be es-tab-lished us-ing
[104]
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[]\T1/ptm/m/n/10 One ad-di-tional field that can be spec-i-fied for a restart i
s []\T1/pcr/m/n/10 interactive[]\T1/ptm/m/n/10 . This should
[105] [106]
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 []\T1/pcr/m/n/10 unz(description, filename, open = "", encoding = getOption("e
ncoding"))[] 
[107]
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[]\T1/ptm/m/n/10 character string, par-tially matched to []\T1/pcr/m/n/10 c("de
fault", "internal",
[108] [109]
Underfull \hbox (badness 1997) in paragraph at lines 7373--7378
[]\T1/pcr/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 unz[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 socketConnection[]\T1/ptm/m/n/10 ,
[110] [111] [112]
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[]\T1/ptm/m/n/10 It may be pos-si-ble to de-duce the cur-rent na-tive en-cod-in
g from
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[]\T1/pcr/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/pcr/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/pcr/m/n/10 "r" []\T1/ptm/m/n
/10 only. This
Underfull \hbox (badness 6592) in paragraph at lines 7663--7670
\T1/ptm/m/n/10 reads the X11 pri-mary se-lec-tion (see [][]$\T1/pcr/m/n/10 http
s : / / specifications . freedesktop .
Underfull \hbox (badness 1735) in paragraph at lines 7663--7670
[]\T1/pcr/m/n/10 "X11_primary" []\T1/ptm/m/n/10 and the sec-ondary se-lec-tion 
as []\T1/pcr/m/n/10 "X11_secondary"[]\T1/ptm/m/n/10 . On most sys-
[113] [114] [115]
Underfull \vbox (badness 10000) has occurred while \output is active [116]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7878--7878
 []\T1/pcr/m/n/9 A <- read.table(con <- file("students", encoding = "UCS-2LE"))
; close(con)[] 
[117] [118] [119] [120]
Underfull \hbox (badness 10000) in paragraph at lines 8211--8213
[]\T1/ptm/m/n/10 The cur-rent eval-u-a-tion depth (in-clud-ing two calls for th
e call to
[121] [122] [123]
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 []\T1/pcr/m/n/9 curlGetHeaders("http://bugs.r-project.org")   ## this redirect
s to https://[] 
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 []\T1/pcr/m/n/9 ## curlGetHeaders("ftp://cran.r-project.org") ## ftp::// suppo
rt is vanishing[] 
[124] [125] [126] [127]
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 []\T1/pcr/m/n/9 tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", leng
th.out = 24)[] 
[128]
Underfull \hbox (badness 10000) in paragraph at lines 8718--8728
[]\T1/pcr/m/n/10 data.frame []\T1/ptm/m/n/10 con-verts each of its ar-gu-ments 
to a data frame by call-ing
Underfull \hbox (badness 1975) in paragraph at lines 8718--8728
[][][]\T1/pcr/m/n/10 as.data.frame[][][](optional = TRUE)[]\T1/ptm/m/n/10 . As 
that is a generic func-tion, meth-ods can be
[129] [130] [131]
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 []                 \T1/pcr/m/n/9 c = seq(as.Date("2004-01-01"), by = "week", l
ength.out = 3),[] 
[132] [133] [134] [135]
Underfull \hbox (badness 10000) in paragraph at lines 9214--9226
\T1/pcr/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") []\T1/ptm/m
/n/10 may give []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 , and
[136] [137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 10000) in paragraph at lines 9758--9762
[]\T1/pcr/m/n/10 .Defunct []\T1/ptm/m/n/10 is called from de-funct func-tions. 
Func-tions should be listed in
[143] [144]
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 []\T1/pcr/m/n/9 ### Promises in an environment [for advanced users]:  --------
-------------[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 9851--9851
 []\T1/pcr/m/n/9 e <- (function(x, y = 1, z) environment())(cos, "y", {cat(" HO
!\n"); pi+2})[] 
Overfull \hbox (60.78088pt too wide) in paragraph at lines 9879--9879
 []        \T1/pcr/m/n/10 backtick = mode(expr) %in% c("call", "expression", "(
", "function"),[] 
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 []        \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "sh
owAttributes"),[] 
[145] [146]
Underfull \hbox (badness 5403) in paragraph at lines 10011--10013
[]\T1/pcr/m/n/10 ..deparseOpts []\T1/ptm/m/n/10 is the [][][]\T1/pcr/m/n/10 cha
racter[][][] []\T1/ptm/m/n/10 vec-tor of pos-si-ble de-pars-ing op-tions used b
y
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[]\T1/ptm/m/n/10 Surround un-eval-u-ated ex-pres-sions, but not [][][]\T1/pcr/m
/n/10 formula[][][][]\T1/ptm/m/n/10 s, with
[147] [148] [149]
Underfull \hbox (badness 1603) in paragraph at lines 10261--10264
[]\T1/ptm/m/n/10 a nu-meric value. The mod-u-lus (ab-so-lute value) of the de-t
er-mi-nant if
[150] [151] [152] [153] [154] [155] [156]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 10726--10726
 []    \T1/pcr/m/n/10 z <- as.POSIXct(c("2016-12-31 23:59:59", "2017-01-01 00:0
0:01"))[] 
[157] [158]
Underfull \hbox (badness 1917) in paragraph at lines 10890--10895
[]\T1/pcr/m/n/10 provideDimnames(x) []\T1/ptm/m/n/10 pro-vides []\T1/pcr/m/n/10
 dimnames []\T1/ptm/m/n/10 where ``miss-ing'', such that its re-sult has
[159]
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 []\T1/pcr/m/n/9 strd(provideDimnames(N, base= list(letters[-(1:9)], tail(LETTE
RS)))) # recycling[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 10946--10946
 []\T1/pcr/m/n/9 strd(provideDimnames(A, base= list(c("AA","BB")))) # recycling
 on both levels[] 
[160] [161]
Underfull \hbox (badness 1168) in paragraph at lines 11048--11053
[]\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of []\
T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . Cur-rently this is only used by
[162]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11150--11150
 []\T1/pcr/m/n/9 ## From R 4.1.0 to 4.1.2, ...names() sometimes did not match n
ames(list(...));[] 
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 []\T1/pcr/m/n/9 chk.n2 <- function(...) stopifnot(identical(print(...names()),
 names(list(...))))[] 
[163] [164]
Underfull \hbox (badness 2828) in paragraph at lines 11271--11276
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
Underfull \hbox (badness 10000) in paragraph at lines 11271--11276
\T1/pcr/m/n/10 org / wiki / IEEE _ 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr
/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _
Underfull \hbox (badness 10000) in paragraph at lines 11271--11276
\T1/pcr/m/n/10 754-[]2019$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
pcr/m/n/10 https :
Overfull \hbox (42.78088pt too wide) in paragraph at lines 11302--11302
 []     \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "showA
ttributes"))[] 
[165]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 11376--11376
 []\T1/pcr/m/n/9 ## Write an ASCII version of the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 base\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 function mean() to our temp file, ..[] 
[166] [167]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 11525--11525
 []\T1/pcr/m/n/9 aq <- transform(airquality, Month = factor(Month, labels = mon
th.abb[5:9])) 
[168] [169] [170]
Underfull \hbox (badness 6396) in paragraph at lines 11723--11731
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
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[]\T1/pcr/m/n/10 duplicated(x, fromLast = TRUE) []\T1/ptm/m/n/10 is equiv-a-len
t to but faster than
[171] [172] [173]
Underfull \hbox (badness 10000) in paragraph at lines 11949--11952
[]\T1/ptm/m/n/10 Do not use []\T1/pcr/m/n/10 dyn.unload []\T1/ptm/m/n/10 on a D
LL loaded by [][][]\T1/pcr/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 : use
[174] [175] [176] [177] [178] [179]
Underfull \hbox (badness 2744) in paragraph at lines 12393--12395
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
[180]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12416--12416
 []\T1/pcr/m/n/9 Encoding(x.) # "unknown" (UTF-8 loc.) | "latin1" (8859-1/CP-12
52 loc.) | ....[] 
[181] [182] [183]
Underfull \hbox (badness 5288) in paragraph at lines 12668--12670
[]\T1/ptm/m/n/10 The path to the de-fault browser. Used to set the de-fault val
ue of
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[]\T1/ptm/m/n/10 Optional. The path to Ghostscript, used by [][][]\T1/pcr/m/n/1
0 dev2bitmap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bitmap[][][] []\T1/pt
m/m/n/10 and
[184]
Underfull \hbox (badness 10000) in paragraph at lines 12735--12738
[]\T1/ptm/m/n/10 The path to HTML []\T1/pcr/m/n/10 tidy[]\T1/ptm/m/n/10 . Used 
by []\T1/pcr/m/n/10 R CMD check []\T1/ptm/m/n/10 if
Underfull \hbox (badness 10000) in paragraph at lines 12753--12755
[]\T1/ptm/m/n/10 (and more). Op-tional. Set-tings for
[185] [186] [187] [188]
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[]\T1/ptm/m/n/10 a frame in the call-ing list. Equiv-a-lent to giv-ing []\T1/pc
r/m/n/10 where []\T1/ptm/m/n/10 as
Underfull \hbox (badness 5970) in paragraph at lines 13046--13048
[]\T1/pcr/m/n/10 get0(): []\T1/ptm/m/n/10 The object---as from [][][]\T1/pcr/m/
n/10 get[][][](x, *)[]\T1/ptm/m/n/10 --- if []\T1/pcr/m/n/10 exists(x, *) []\T1
/ptm/m/n/10 is true, oth-er-wise
[189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13869--13869
 []\T1/pcr/m/n/9 ## "avector" := vector that keeps attributes.   Could provide 
a constructor[] 
[201] [202] [203] [204] [205] [206] [207] [208] [209] [210]
Underfull \hbox (badness 2253) in paragraph at lines 14597--14599
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[211] [212]
Underfull \hbox (badness 2573) in paragraph at lines 14765--14767
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/pcr
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/pcr/m/n/10 fsep =
[213] [214]
Underfull \hbox (badness 10000) in paragraph at lines 14924--14926
[]\T1/ptm/m/n/10 logical: should file dates be pre-served where pos-si-ble? See
[215] [216]
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[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 15056--15059
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
Overfull \hbox (47.58038pt too wide) in paragraph at lines 15077--15077
 []                     \T1/pcr/m/n/9 # |--> (TRUE,FALSE) : ok for A but not B 
as it exists already[] 
[217]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 15102--15102
 []\T1/pcr/m/n/10 dir.create(path, showWarnings = TRUE, recursive = FALSE, mode
 = "0777")[] 
[218]
Underfull \hbox (badness 10000) in paragraph at lines 15199--15202
[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 unlink[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 basename[][][][]\T1/
ptm/m/n/10 ,
Overfull \hbox (9.78043pt too wide) in paragraph at lines 15209--15209
 []\T1/pcr/m/n/9 f <- list.files(".", all.files = TRUE, full.names = TRUE, recu
rsive = TRUE)[] 
[219]
Underfull \hbox (badness 10000) in paragraph at lines 15275--15278
[]\T1/pcr/m/n/10 packageNotFoundError []\T1/ptm/m/n/10 cre-ates an er-ror con-d
i-tion ob-ject of class
Overfull \hbox (20.58041pt too wide) in paragraph at lines 15292--15292
 []\T1/pcr/m/n/9 ## will not give an error, maybe a warning about *all* locatio
ns it is found:[] 
[220]
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 []\T1/pcr/m/n/10 findInterval(x, vec, rightmost.closed = FALSE, all.inside = F
ALSE, 
Underfull \hbox (badness 3965) in paragraph at lines 15353--15357
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[221] [222] [223]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 15517--15517
 []       \T1/pcr/m/n/10 .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING) 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 15518--15518
 [] \T1/pcr/m/n/10 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING)[] 
[224] [225] [226] [227]
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 []\T1/pcr/m/n/9 ## formals returns a pairlist. Arguments with no default have 
type symbol (aka name).[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 15763--15763
 []\T1/pcr/m/n/9 ## formals returns NULL for primitive functions.  Use it in co
mbination with[] 
[228]
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[]\T1/ptm/m/n/10 Either a log-i-cal spec-i-fy-ing whether el-e-ments of a real 
or com-plex vec-
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\T1/ptm/m/n/10 tor should be en-coded in sci-en-tific for-mat, or an in-te-ger 
penalty (see
[229]
Underfull \hbox (badness 6944) in paragraph at lines 15946--15949
[][][]\T1/pcr/m/n/10 formatC[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 paste
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 sprintf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
rint[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 prettyNum[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 toString[][][][]\T1/ptm/m/n/10 ,
[230]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 15971--15971
 []\T1/pcr/m/n/9 z <- list(a = letters[1:3], b = (-pi+0i)^((-2:2)/2), c = c(1,1
0,100,1000),[] 
[231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 16109--16111
[]\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 is used for ``pret-ti-fy-ing'' (p
os-si-bly for-mat-ted) num-bers, also in
Overfull \hbox (48.78088pt too wide) in paragraph at lines 16129--16129
 []          \T1/pcr/m/n/10 decimal.mark = getOption("OutDec"), input.d.mark = 
decimal.mark,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 16135--16135
 []\T1/pcr/m/n/10 .format.zeros(x, zero.print, nx = suppressWarnings(as.numeric
(x)),[] 
Underfull \hbox (badness 2790) in paragraph at lines 16142--16145
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/pcr/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[233]
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[]\T1/pcr/m/n/10 "f" []\T1/ptm/m/n/10 gives num-bers in the usual []\T1/pcr/m/n
/10 xxx.xxx []\T1/ptm/m/n/10 for-mat; []\T1/pcr/m/n/10 "e" []\T1/ptm/m/n/10 and
 []\T1/pcr/m/n/10 "E" []\T1/ptm/m/n/10 give
[234]
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[]\T1/ptm/m/n/10 This works via []\T1/pcr/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/pcr/m/n/10 .format.zeros(*,
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[]\T1/ptm/m/n/10 For num-bers, []\T1/pcr/m/n/10 formatC() []\T1/ptm/m/n/10 call
s []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 when needed which it-self calls
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[]\T1/ptm/m/n/10 If you set []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 it over-ri
des the set-ting of []\T1/pcr/m/n/10 mode[]\T1/ptm/m/n/10 , so []\T1/pcr/m/n/10
 formatC(123.45, mode =
Underfull \hbox (badness 10000) in paragraph at lines 16287--16295
[]\T1/pcr/m/n/10 prettyNum []\T1/ptm/m/n/10 is the util-ity func-tion for pret-
ti-fy-ing []\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 x []\T1/ptm/m/n
/10 can be com-plex (or
[235] [236]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 16395--16395
 []\T1/pcr/m/n/9 fc <- formatC(1.234 + 10^(0:8), format = "fg", width = 11, big
.mark = "\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ")[] 
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 []\T1/pcr/m/n/9 doLC <- FALSE # <= R warns, so change to TRUE manually if you 
want see the effect[] 
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[238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248]
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 []\T1/pcr/m/n/9 utils::tail(getLoadedDLLs(), 2) # the last 2 loaded ones, stil
l a DLLInfoList[] 
[249] [250]
Underfull \hbox (badness 2418) in paragraph at lines 17360--17364
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/pcr/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 name []\T1/ptm/m/n/10 con-tains only one s
ym-bol name and []\T1/pcr/m/n/10 unlist []\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 TR
UE[]\T1/ptm/m/n/10 , then the sin-gle
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[][][]\T1/pcr/m/n/10 getDLLRegisteredRoutines[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 is.loaded[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .C[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Fortran[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 .External[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Call[][][][]
\T1/ptm/m/n/10 ,
[251] [252]
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[]\T1/ptm/m/n/10 The spe-cial case []\T1/pcr/m/n/10 bindtextdomain(NULL) []\T1/
ptm/m/n/10 calls C level
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[]\T1/pcr/m/n/10 textdomain(textdomain(NULL)) []\T1/ptm/m/n/10 for the pur-pose
 of flush-ing (i.e., emp-ty-ing) the
[253]
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 []\T1/pcr/m/n/9 if(is.na(thisLang) || !nzchar(thisLang)) thisLang <- "en" # "f
actory" default[] 
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 []\T1/pcr/m/n/9 gettext(enT, domain="R-stats")# "leeres Modell angegeben" (if 
translation works)[] 
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 []\T1/pcr/m/n/9 ## Here, we reset to the *original* setting before the full ex
ample started:[] 
[255] [256]
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 []\T1/pcr/m/n/10 grep(pattern, x, ignore.case = FALSE, perl = FALSE, value = F
ALSE, 
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[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[257] [258] [259] [260] [261]
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 []  \T1/pcr/m/n/9 nms <- nms[is.na(match(nms, c("F","T")))] # <-- work around 
"checking hack"[] 
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 []\T1/pcr/m/n/9 name.rex <- "(?<first>[[:upper:]][[:lower:]]+) (?<last>[[:uppe
r:]][[:lower:]]+)"[] 
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Overfull \hbox (0.78088pt too wide) in paragraph at lines 18174--18174
 []        \T1/pcr/m/n/10 value = FALSE, fixed = FALSE, all = FALSE, invert = F
ALSE)[] 
[263] [264] [265] [266] [267]
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 []\T1/pcr/m/n/9 (ii <- grouping(x <- c(1, 1, 3:1, 1:4, 3), y <- c(9, 9:1), z <
- c(2, 1:9))) 
[268]
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 []\T1/pcr/m/n/9 z <- gzcon(url("https://www.stats.ox.ac.uk/pub/datasets/csb/ch
12.dat.gz"))[] 
[269] [270] [271]
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 []\T1/pcr/m/n/10 iconv(x, from = "", to = "", sub = NA, mark = TRUE, toRaw = F
ALSE) 
[272] [273] [274] [275]
Underfull \hbox (badness 1163) in paragraph at lines 19189--19191
[]\T1/ptm/m/n/10 The ICU user guide chap-ter on col-la-tion ([][]$\T1/pcr/m/n/1
0 https : / / unicode-[]org . github . io / icu /
[276]
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 []\T1/pcr/m/n/9 ## As we don\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 t know the current s
ettings, we can only reset to the default.[] 
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 []\T1/pcr/m/n/10 identical(x, y, num.eq = TRUE, single.NA = TRUE, attrib.as.se
t = TRUE, 
[277]
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 []              \T1/pcr/m/n/10 num.eq = FALSE, single.NA = FALSE, attrib.as.se
t = FALSE,[] 
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 []              \T1/pcr/m/n/10 ignore.bytecode = FALSE, ignore.environment = F
ALSE,[] 
[278]
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 []\T1/pcr/m/n/9 ### For functions ("closure"s): ------------------------------
----------------[] 
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 []\T1/pcr/m/n/9 identical(f, g)                        # TRUE, as bytecode is 
ignored by default[] 
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 []\T1/pcr/m/n/9 ## GLM families contain several functions, some of which share
 an environment:[] 
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 []\T1/pcr/m/n/9 op <- options(keep.source = TRUE) # and so, these have differi
ng "srcref" :[] 
[279] [280]
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 []\T1/pcr/m/n/9 ## This is a (not atypical) case where it is better *not* to u
se ifelse(),[] 
[281]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19525--19525
 []\T1/pcr/m/n/9 ## example of different return modes (and \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 test\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 alone determining length):[] 
[282] [283]
Underfull \hbox (badness 10000) in paragraph at lines 19730--19732
[]\T1/ptm/m/n/10 how some er-rors are han-dled and re-ported, e.g. see [][][]\T
1/pcr/m/n/10 stop[][][] []\T1/ptm/m/n/10 and
[284] [285] [286] [287] [288]
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[]\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . orac
le . com / cd / E19957-[]01 / 806-[]3568 / ncg _
[289] [290] [291]
Underfull \hbox (badness 4699) in paragraph at lines 20315--20318
[]\T1/pcr/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 ,
[292] [293]
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 []\T1/pcr/m/n/10 ISOdate(year, month, day, hour = 12, min = 0, sec = 0, tz = "
GMT")[] 
[294] [295] [296]
Underfull \hbox (badness 4739) in paragraph at lines 20578--20580
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[297]
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 []\T1/pcr/m/n/9 isSymmetric(D3)                         # FALSE (as row and co
lumn names differ)[] 
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 []\T1/pcr/m/n/9 isSymmetric(D3, check.attributes=FALSE) # TRUE  (as names are 
not checked)[] 
[298] [299]
Underfull \hbox (badness 2961) in paragraph at lines 20805--20808
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
[300] [301] [302] [303] [304] [305] [306]
Underfull \hbox (badness 1975) in paragraph at lines 21246--21249
[]\T1/ptm/m/n/10 The value of the in-ter-nal eval-u-a-tion of a top-level \T1/p
hv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sion is al-ways as-signed to
[307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 1077) in paragraph at lines 21662--21667
[]\T1/ptm/m/n/10 In late 2017 a []\T1/pcr/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/pcr/m/n/10 libcurl []\T
1/ptm/m/n/10 and
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[][][]$\T1/pcr/m/n/10 https : / / curl . se / docs / sslcerts . html$[][] \T1/p
tm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / curl . se / docs /
[313]
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[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/pcr/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
[314]
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[]\T1/pcr/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/pcr/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a
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\T1/ptm/m/n/10 hid-den di-rec-tory and may not be viewed by some soft-ware. It 
may be opened by
[315] [316]
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[]\T1/ptm/m/n/10 To sup-press mes-sages dur-ing the load-ing of pack-ages use
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[][][]\T1/pcr/m/n/10 suppressPackageStartupMessages[][][][]\T1/ptm/m/n/10 : thi
s will sup-press all mes-sages from \T1/phv/m/n/10 R \T1/ptm/m/n/10 it-self
Underfull \hbox (badness 1221) in paragraph at lines 21925--21932
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 is called with no
 []\T1/pcr/m/n/10 package []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 help []\T1/ptm/m
/n/10 ar-gu-ment, it lists all avail-able pack-
[317] [318]
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[][][]\T1/pcr/m/n/10 attach[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 detach
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 search[][][][]\T1/ptm/m/n/10 , []
[][]\T1/pcr/m/n/10 objects[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 autoloa
d[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 requireNamespace[][][][]\T1/ptm/
m/n/10 ,
[319]
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[]\T1/ptm/m/n/10 Do not use [][][]\T1/pcr/m/n/10 dyn.unload[][][] []\T1/ptm/m/n
/10 on a DLL loaded by []\T1/pcr/m/n/10 library.dynam[]\T1/ptm/m/n/10 : use
[320]
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[]\T1/ptm/m/n/10 A small num-ber of files (some of the API header files) are di
s-tributed un-der the
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\T1/ptm/m/n/10 LESSER GNU GEN-ERAL PUB-LIC LI-CENSE, ver-sion 2.1 or later. A c
opy of
Underfull \hbox (badness 5133) in paragraph at lines 22245--22250
\T1/ptm/m/n/10 this li-cense is in file `\T1/pcr/m/n/10 $R_SHARE_DIR/licenses/L
GPL-2.1\T1/ptm/m/n/10 ' and can be viewed
Underfull \hbox (badness 10000) in paragraph at lines 22245--22250
\T1/ptm/m/n/10 by []\T1/pcr/m/n/10 RShowDoc("LGPL-2.1")[]\T1/ptm/m/n/10 . Ver-s
ion 3 of the li-cense can be dis-played by
[321] [322] [323]
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
[324]
Underfull \hbox (badness 3343) in paragraph at lines 22478--22482
[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 files[][][] []\T1/ptm/
m/n/10 for many more file han-dling func-tions and
[325] [326]
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 []          \T1/pcr/m/n/9 identical(L$b, e$b)) # "$" working for environments 
as for lists[] 
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 []              \T1/pcr/m/n/9 df = data.frame(x = rnorm(20), y = rbinom(20, 1,
 prob = 0.2))),[] 
[327] [328]
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 []\T1/pcr/m/n/9 ## This however annihilates all objects in .GlobalEnv with the
 same names ![] 
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 []\T1/pcr/m/n/9 attach("all.rda") # safer and will warn about masked objects w
/ same name in .GlobalEnv[] 
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[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-
[329] [330]
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[]\T1/ptm/m/n/10 Almost all the out-put rou-tines used by \T1/phv/m/n/10 R \T1/
ptm/m/n/10 it-self un-der Win-dows ig-nore the set-ting of
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 []\T1/pcr/m/n/9 Sys.setlocale("LC_TIME", "de_DE.UTF-8")  # Linux, macOS, other
 Unix-alikes[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # in C_TIME locale \T
S1/pcr/m/n/9 '\T1/pcr/m/n/9 cT\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 ; typically German
[] 
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 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # "standard" (still p
latform specific ?)[] 
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 []\T1/pcr/m/n/9 ## Not run: Sys.setlocale("LC_COLLATE", "C")   # turn off loca
le-specific sorting,[] 
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 []\T1/pcr/m/n/9 Sys.setenv("LANGUAGE" = "es") # set the language for error/war
ning messages[] 
[331]
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 [] \T1/pcr/m/n/9 sg <- matrix(unlist(strsplit(strsplit(Sys.getlocale(), sep)[[
1]], "=")), nrow=2)[] 
[332] [333]
Underfull \hbox (badness 1400) in paragraph at lines 23118--23122
[][][]\T1/pcr/m/n/10 raw[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logical[]
[][] []\T1/ptm/m/n/10 or `number-like' vec-tors (i.e., of types [][][]\T1/pcr/m
/n/10 double[][][] []\T1/ptm/m/n/10 (class
[334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 23960--23960
 []\T1/pcr/m/n/9 zN <- c(complex(real = NA , imaginary =  r ), complex(real =  
r , imaginary = NA ),[] 
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 []        \T1/pcr/m/n/9 complex(real =  r , imaginary = NaN), complex(real = N
aN, imaginary =  r ))[] 
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 []\T1/pcr/m/n/9 zM ##--> many "NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s" (= 1) and th
e four non-NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s (3 different ones, at 7,9,10)[] 
[346] [347]
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 []\T1/pcr/m/n/9 match.arg(c("a", ""),  c("", NA, "bb", "abc"), several.ok=TRUE
) # |-->  "abc"[] 
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[]\T1/ptm/m/n/10 `function' on this help page means an in-ter-preted func-tion 
(also known as a `clo-sure'):
[348] [349] [350] [351]
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[]\T1/ptm/m/n/10 For ma-trix \T1/ptm/m/it/10 cross\T1/ptm/m/n/10 products, [][]
[]\T1/pcr/m/n/10 crossprod[][][]() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 tcross
prod() []\T1/ptm/m/n/10 are typ-i-cally prefer-able.
[352] [353] [354] [355] [356] [357] [358] [359] [360]
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[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
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\T1/ptm/m/n/10 changed to al-low more (up to 3Gb). See [][]$\T1/pcr/m/n/10 http
s : / / docs . microsoft . com / en-[]gb /
[361]
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 []      \T1/pcr/m/n/10 by.x = by, by.y = by, all = FALSE, all.x = all, all.y =
 all,[] 
[362] [363] [364] [365] [366] [367] [368] [369]
Underfull \hbox (badness 1448) in paragraph at lines 25554--25562
[]\T1/pcr/m/n/10 anyNA(recursive = FALSE) []\T1/ptm/m/n/10 works the same way a
s []\T1/pcr/m/n/10 is.na[]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 anyNA(recursive =
[370]
Underfull \hbox (badness 3849) in paragraph at lines 25669--25674
[]\T1/pcr/m/n/10 as.name []\T1/ptm/m/n/10 first co-erces its ar-gu-ment in-ter-
nally to a char-ac-ter vec-tor (so meth-ods for
[371]
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[]\T1/ptm/m/n/10 For an [][][]\T1/pcr/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list,
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\T1/ptm/m/n/10 i.e., []\T1/pcr/m/n/10 names(as.list(env, all.names = TRUE)) []\
T1/ptm/m/n/10 which are also given by [][][]\T1/pcr/m/n/10 ls[][][](env,
Underfull \hbox (badness 3148) in paragraph at lines 25746--25752
\T1/pcr/m/n/10 all.names = TRUE, sorted = FALSE)[]\T1/ptm/m/n/10 . If the en-vi
-ron-ment is used as a hash ta-ble,
[372] [373] [374]
Underfull \hbox (badness 2237) in paragraph at lines 25909--25911
[]\T1/ptm/m/n/10 character string: par-tial match-ing to one of []\T1/pcr/m/n/1
0 c("bytes", "chars",
[375] [376] [377]
Underfull \hbox (badness 6188) in paragraph at lines 26136--26139
[]\T1/ptm/m/n/10 optional [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/pcr/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[378] [379] [380]
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\T1/ptm/m/n/10 tion []\T1/pcr/m/n/10 GetFinalPathNameByHandle []\T1/ptm/m/n/10 
and in case of an er-ror (such as in-suf-fi-cient per-
[381] [382] [383] [384]
Underfull \hbox (badness 2197) in paragraph at lines 26635--26639
[]\T1/ptm/m/n/10 Loading a names-pace should where pos-si-ble be silent, with s
tartup mes-sages given by
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[]\T1/pcr/m/n/10 .onAttach[]\T1/ptm/m/n/10 . These mes-sages (and any es-sen-ti
al ones from []\T1/pcr/m/n/10 .onLoad[]\T1/ptm/m/n/10 ) should use
[385]
Underfull \hbox (badness 2846) in paragraph at lines 26649--26653
[]\T1/ptm/m/n/10 Uses of []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 with ar-gu-m
ent []\T1/pcr/m/n/10 help []\T1/ptm/m/n/10 to dis-play ba-sic in-for-ma-tion ab
out the pack-
Underfull \hbox (badness 1990) in paragraph at lines 26649--26653
\T1/ptm/m/n/10 age should use []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 on the c
om-puted pack-age in-for-ma-tion ob-ject and pass this to
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 []\T1/pcr/m/n/10 attachNamespace(ns, pos = 2L, depends = NULL, exclude, includ
e.only) 
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 []              \T1/pcr/m/n/10 keep.parse.data = getOption("keep.parse.data.pk
gs"))[] 
[386]
Underfull \hbox (badness 10000) in paragraph at lines 26744--26750
[]\T1/pcr/m/n/10 loadNamespace []\T1/ptm/m/n/10 does not at-tach the name space
 it loads to the search path.
Underfull \hbox (badness 1168) in paragraph at lines 26744--26750
[]\T1/pcr/m/n/10 attachNamespace []\T1/ptm/m/n/10 can be used to at-tach a fram
e con-tain-ing the ex-ported val-ues of a
Underfull \hbox (badness 10000) in paragraph at lines 26757--26759
[]\T1/pcr/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/pcr/m/n/10 pkg %in%
[387]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 26824--26824
 [] \T1/pcr/m/n/9 ## The string "foo" and the symbol \TS1/pcr/m/n/9 '\T1/pcr/m/
n/9 foo\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 can be used interchangably here:[] 
[388] [389] [390]
Underfull \hbox (badness 8189) in paragraph at lines 27019--27025
[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 is.numeric []\T1/ptm/
m/n/10 re-turns []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 if its ar-gu-ment is of 
[][]mode[][][]
[391] [392] [393]
Underfull \hbox (badness 2591) in paragraph at lines 27245--27253
\T1/ptm/m/n/10 ject as ob-tained by [][][]\T1/pcr/m/n/10 R.version[][][][]\T1/p
tm/m/n/10 . For []\T1/pcr/m/n/10 as.numeric_version []\T1/ptm/m/n/10 and
[394] [395] [396] [397]
Underfull \hbox (badness 1603) in paragraph at lines 27527--27529
[]\T1/ptm/m/n/10 date ob-jects or char-ac-ter vec-tors. (Char-ac-ter vec-tors a
re con-verted by
[398] [399]
Underfull \hbox (badness 1210) in paragraph at lines 27654--27662
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-
[400] [401]
Underfull \hbox (badness 3271) in paragraph at lines 27874--27877
[]\T1/ptm/m/n/10 default PDF viewer. The de-fault is set from the en-vi-ron-men
t vari-able
[402] [403] [404]
Underfull \hbox (badness 3138) in paragraph at lines 28180--28186
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/pcr/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 28180--28186
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/pcr/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 2088) in paragraph at lines 28180--28186
\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
[405]
Underfull \hbox (badness 1194) in paragraph at lines 28193--28196
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/pcr/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/pcr/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and
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[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
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[]\T1/ptm/m/n/10 logical: should per-directory pack-age lock-ing be used by
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[]\T1/ptm/m/n/10 Used by [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
[406]
Underfull \hbox (badness 1009) in paragraph at lines 28279--28282
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/pcr/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/pcr/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
Underfull \hbox (badness 10000) in paragraph at lines 28295--28298
[]\T1/ptm/m/n/10 The de-fault type of pack-ages to be down-loaded and in-stalle
d -- see
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[]\T1/pcr/m/n/10 "source" []\T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN 
ma-cOS
Underfull \hbox (badness 10000) in paragraph at lines 28303--28309
\T1/ptm/m/n/10 build), []\T1/pcr/m/n/10 "mac.binary" []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 "both" []\T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS
Underfull \hbox (badness 10000) in paragraph at lines 28303--28309
\T1/ptm/m/n/10 builds). ([]\T1/pcr/m/n/10 "mac.binary.el-capitan"[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 "mac.binary.mavericks"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 5091) in paragraph at lines 28303--28309
[]\T1/pcr/m/n/10 "mac.binary.leopard" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "ma
c.binary.universal" []\T1/ptm/m/n/10 are no longer
[407] [408] [409] [410] [411]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28675--28675
 []\T1/pcr/m/n/9 system.time(o <- sort.list(xx, method = "radix")) # 0.007 sec,
 300X faster[] 
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[]\T1/ptm/m/n/10 where el-e-ment []\T1/pcr/m/n/10 A[c(arrayindex.x, arrayindex.
y)] = FUN(X[arrayindex.x],
[412] [413]
Underfull \hbox (badness 1210) in paragraph at lines 28835--28838
[]\T1/pcr/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/pcr/m/n/10 parse(tex
t=s,
[414] [415] [416]
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 []\T1/pcr/m/n/9 tryCatch(parse(text = txt, srcfile = sf), error = function(e) 
"Syntax error.")[] 
[417]
Underfull \hbox (badness 7133) in paragraph at lines 29117--29123
[][][]\T1/pcr/m/n/10 toString[][][] []\T1/ptm/m/n/10 typ-i-cally calls []\T1/pc
r/m/n/10 paste(*, collapse=", ")[]\T1/ptm/m/n/10 . String ma-nip-u-la-tion with
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 []\T1/pcr/m/n/9 ## Notice that the recycling rules make every input as long as
 the longest input.[] 
[418]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 29151--29151
 []\T1/pcr/m/n/9 paste("1st", "2nd", "3rd", collapse = ", ") # probably not wha
t you wanted[] 
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 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 recycle0 = TRUE\TS1/pcr/m/n/9
 ' \T1/pcr/m/n/9 allows more vectorized behaviour, i.e. zero-length recycling :
[] 
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 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- good: empty!", recycle0=
TRUE) # -> character(0)[] 
[419] [420] [421]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 29356--29356
 []\T1/pcr/m/n/9 mtcars |> subset(cyl == 4) |> nrow()  # same as nrow(subset(mt
cars, cyl == 4))[] 
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 []\T1/pcr/m/n/9 stop() |> (function(...) {})() # stop() is not used on RHS so 
is not evaluated[] 
[422]
Underfull \hbox (badness 1360) in paragraph at lines 29429--29433
[]\T1/ptm/m/n/10 All other []\T1/pcr/m/n/10 type[]\T1/ptm/m/n/10 s give a warn-
ing or an er-ror; us-ing, e.g., []\T1/pcr/m/n/10 type =
[423] [424] [425] [426]
Underfull \hbox (badness 2277) in paragraph at lines 29741--29746
\T1/ptm/m/n/10 i.e., strictly in-clude the bounds of []\T1/pcr/m/n/10 x[]\T1/pt
m/m/n/10 . New from \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0, al-low-ing
[427] [428]
Underfull \hbox (badness 1701) in paragraph at lines 29857--29861
[]\T1/ptm/m/n/10 This func-tion is al-most never used: []\TS1/cmtt/m/n/10 `\T1/
pcr/m/n/10 name\TS1/cmtt/m/n/10 ` []\T1/ptm/m/n/10 or, more care-fully, [][][]\
T1/pcr/m/n/10 get[][][](name, envir =
[429]
Underfull \hbox (badness 1796) in paragraph at lines 29925--29928
[]\T1/ptm/m/n/10 character string (or []\T1/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/pcr/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
[430] [431] [432] [433]
Underfull \hbox (badness 10000) in paragraph at lines 30129--30132
[]\T1/ptm/m/n/10 Option []\T1/pcr/m/n/10 width []\T1/ptm/m/n/10 con-trols the p
rint-ing of vec-tors, ma-tri-ces and ar-rays, and op-tion
[434] [435] [436] [437] [438] [439] [440] [441]
Underfull \hbox (badness 2961) in paragraph at lines 30675--30678
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
[442] [443]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 30824--30824
 []           \T1/pcr/m/n/9 c1 = rep(c(1,0,0), 2), c2 = rep(c(0,1,0), 2), c3 = 
rep(c(0,0,1),2))[] 
[444] [445] [446] [447]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 31117--31117
 []\T1/pcr/m/n/9 (nn <- "\u0126\u0119\u1114\u022d\u2001\u03e2\u0954\u0f3f\u13d3
\u147b\u203c")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 31128--31128
 []\T1/pcr/m/n/9 n2 <- "\U0126\U0119\U1114\U022d\U2001\U03e2\U0954\U0f3f\U13d3\
U147b\U203c"[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 31134--31134
 []\T1/pcr/m/n/9 ## https://cran.r-project.org/doc/manuals/r-release/R-lang.htm
l#Literal-constants[] 
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 []\T1/pcr/m/n/9 ## nul characters (for terminating strings in C) are not allow
ed (parse errors)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [448]
[449]
Underfull \hbox (badness 7415) in paragraph at lines 31237--31243
[]\T1/ptm/m/n/10 Do \T1/ptm/m/it/10 not \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R.v
ersion$os []\T1/ptm/m/n/10 to test the plat-form the code is run-ning on: use
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 []\T1/pcr/m/n/9 mtext(R.version.string, side = 1, line = 4, adj = 1) # a usefu
l bottom-right note[] 
[450]
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 []\T1/pcr/m/n/10 set.seed(seed, kind = NULL, normal.kind = NULL, sample.kind =
 NULL)[] 
[451] [452]
Underfull \hbox (badness 3713) in paragraph at lines 31452--31463
[]\T1/pcr/m/n/10 normal.kind []\T1/ptm/m/n/10 can be []\T1/pcr/m/n/10 "Kinderma
n-Ramage"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Buggy Kinderman-Ramage" []\T1/ptm
/m/n/10 (not
[453]
Underfull \hbox (badness 1248) in paragraph at lines 31604--31611
\T1/ptm/m/n/10 uni-form pseudo-random num-ber gen-er-a-tor, \T1/ptm/m/it/10 ACM
 Trans-ac-tions on Mod-el-ing and Com-puter
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\T1/ptm/m/n/10 Now see [][]$\T1/pcr/m/n/10 http : / / www . math . sci . hirosh
ima-[]u . ac . jp / ~m-[]mat / MT / VERSIONS /
[454] [455]
Underfull \hbox (badness 1533) in paragraph at lines 31722--31725
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[456] [457]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 31867--31867
 []     \T1/pcr/m/n/10 ties.method = c("average", "first", "last", "random", "m
ax", "min"))[] 
[458]
Underfull \hbox (badness 1038) in paragraph at lines 31885--31896
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/pcr/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[459] [460]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 32029--32029
 []\T1/pcr/m/n/9 rapply(X, function(x) x, how = "replace") -> X.; stopifnot(ide
ntical(X, X.))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 32031--32031
 []\T1/pcr/m/n/9 rapply(X, deparse, control = "all") # passing extras. argument
 of deparse()[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 32032--32032
 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "list")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 32033--32033
 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 32034--32034
 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character",                      h
ow = "unlist")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 32041--32041
 []\T1/pcr/m/n/9 rapply(E, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
[461] [462] [463] [464] [465]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 32349--32349
 []\T1/pcr/m/n/9 ## Bit representation  [ sign | exponent | mantissa ] of doubl
e prec numbers :[] 
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 []\T1/pcr/m/n/9 bitC <- function(x) noquote(vapply(as.double(x), function(x) {
 # split one double[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 32361--32361
 []\T1/pcr/m/n/9 d2bI <- function(x) vapply(as.double(x), function(x) intToBits
(numToInts(x)), raw(64L))[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 32362--32362
 []\T1/pcr/m/n/9 d2b  <- function(x) vapply(as.double(x), function(x)          
 numToBits(x) , raw(64L))[] 
[466]
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[]\T1/ptm/m/n/10 Either an ob-ject whose mode will give the mode of the vec-tor
 to
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\T1/ptm/m/n/10 be read, or a char-ac-ter vec-tor of length one de-scrib-ing the
 mode:
Underfull \hbox (badness 1824) in paragraph at lines 32457--32462
\T1/ptm/m/n/10 one of []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/pcr/m/
n/10 "double"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 "int"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/
10 ,
[467] [468] [469] [470] [471] [472] [473] [474]
Underfull \hbox (badness 2080) in paragraph at lines 32997--33007
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 infoRDS[]\T1/ptm/m/n/10 , an \T1/phv/m/n/
10 R \T1/ptm/m/n/10 list with el-e-ments []\T1/pcr/m/n/10 version []\T1/ptm/m/n
/10 (ver-sion num-ber, cur-rently 2 or 3),
[475]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 33031--33031
 []\T1/pcr/m/n/9 ## or examine the object via a connection, which will be opene
d as needed.[] 
[476] [477] [478] [479] [480] [481] [482]
Underfull \hbox (badness 7558) in paragraph at lines 33551--33555
[]\T1/pcr/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1968) in paragraph at lines 33561--33563
[]\T1/ptm/m/n/10 This help page is based on the TRE doc-u-men-ta-tion and the P
OSIX stan-dard, and the
Underfull \hbox (badness 10000) in paragraph at lines 33572--33574
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/pcr/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs /
Underfull \hbox (badness 1975) in paragraph at lines 33575--33579
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/pcr/m
/n/10 https : / / www .
[483] [484]
Underfull \vbox (badness 10000) has occurred while \output is active [485]
[486] [487] [488]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 33946--33946
 []\T1/pcr/m/n/9 rep(1:4, each = 2, times = 3)         # length 24, 3 complete 
replications[] 
[489]
Underfull \hbox (badness 10000) in paragraph at lines 34017--34021
[][][]\T1/pcr/m/n/10 TRUE[][][] [][]FALSE[][][] [][]NULL[][][] [][]Inf[][][] []
[]NaN[][][] [][]NA[][][] [][]NA_integer_[][][] [][]NA_real_[][][] [][]NA_comple
x_[][][]
[490] [491] [492]
Underfull \hbox (badness 2302) in paragraph at lines 34245--34250
[]\T1/pcr/m/n/10 signif []\T1/ptm/m/n/10 rounds the val-ues in its first ar-gu-
ment to the spec-i-fied num-ber of \T1/ptm/m/it/10 sig-nif-i-cant
Underfull \hbox (badness 1824) in paragraph at lines 34245--34250
\T1/ptm/m/n/10 dig-its. Hence, for []\T1/pcr/m/n/10 numeric x[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 signif(x, dig) []\T1/ptm/m/n/10 is the same as []\T1/pcr/m/n/
10 round(x, dig -
[493] [494]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 34378--34378
 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"))[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 34381--34381
 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 34388--34388
 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
[495] [496] [497] [498] [499] [500] [501]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 34836--34836
 []           \T1/pcr/m/n/10 useHash = (n > 1e+07 && !replace && is.null(prob) 
&& size <= n/2))[] 
[502] [503] [504] [505] [506] [507]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 35273--35273
 []     \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, skipNul =
 FALSE)[] 
[508] [509]
Underfull \hbox (badness 1158) in paragraph at lines 35377--35382
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
[510] [511]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 35563--35563
 []\T1/pcr/m/n/9 cat("TITLE extra line", "2 3 5 7", "11 13 17", file = "ex.data
", sep = "\n") 
[512] [513] [514]
Underfull \hbox (badness 4752) in paragraph at lines 35822--35825
[]\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence []\T1/pcr/
m/n/10 1, 2, ..., length(along.with)[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 5563) in paragraph at lines 35826--35832
[]\T1/ptm/m/n/10 The fifth form gen-er-ates the se-quence []\T1/pcr/m/n/10 1, 2
, ..., length(from) []\T1/ptm/m/n/10 (as if ar-gu-ment
[515] [516] [517] [518] [519] [520] [521] [522] [523]
Underfull \hbox (badness 6094) in paragraph at lines 36412--36416
[]\T1/pcr/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use
Underfull \hbox (badness 6559) in paragraph at lines 36412--36416
\T1/ptm/m/n/10 with []\T1/pcr/m/n/10 getConnection[]\T1/ptm/m/n/10 , cor-re-spo
nd-ing to the row names of the ta-ble re-turned by
[524] [525]
Underfull \hbox (badness 3826) in paragraph at lines 36503--36514
[]\T1/ptm/m/n/10 In Win-dows, com-mand line in-ter-pre-ta-tion is done by the a
p-pli-ca-tion as well as the
Underfull \hbox (badness 3492) in paragraph at lines 36503--36514
\T1/ptm/m/n/10 shell. It may de-pend on the com-piler used: Mi-crosoft's rules 
for the C run-time
Underfull \hbox (badness 10000) in paragraph at lines 36503--36514
\T1/ptm/m/n/10 are given at [][]$\T1/pcr/m/n/10 https : / / learn . microsoft .
 com / en-[]us / cpp / c-[]language /
Underfull \hbox (badness 1635) in paragraph at lines 36503--36514
\T1/pcr/m/n/10 parsing-[]c-[]command-[]line-[]arguments ? view = msvc-[]160$[][
]\T1/ptm/m/n/10 . It may de-pend on the
[526] [527] [528] [529] [530] [531] [532] [533]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 37057--37057
 []         \T1/pcr/m/n/10 method = c("auto", "shell", "quick", "radix"), index
.return = FALSE)[] 
[534] [535] [536] [537]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 37309--37309
 []              \T1/pcr/m/n/10 print. = TRUE, echo = TRUE, max.deparse.length 
= Inf,[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 37311--37311
 []              \T1/pcr/m/n/10 deparseCtrl = c("keepInteger", "showAttributes"
, "keepNA"),[] 
Underfull \hbox (badness 4954) in paragraph at lines 37354--37360
[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 vec-tor, passed as []\T1/
pcr/m/n/10 control []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 deparse[][][]()[]\T
1/ptm/m/n/10 , see also
Underfull \hbox (badness 5050) in paragraph at lines 37354--37360
[][][]\T1/pcr/m/n/10 .deparseOpts[][][][]\T1/ptm/m/n/10 . In \T1/phv/m/n/10 R \
T1/ptm/m/n/10 ver-sion <= 3.3.x, this was hard-coded to
[538] [539]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 37465--37465
 []\T1/pcr/m/n/9 ## (all should look "as if on top level", e.g. non-assignments
 should print:)[] 
[540] [541] [542] [543] [544]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 37808--37808
 []\T1/pcr/m/n/9 ### Calculate \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 z-scores\TS1/pcr/m
/n/9 ' \T1/pcr/m/n/9 by group (standardize to mean zero, variance one)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 37823--37823
 []\T1/pcr/m/n/9 ## Notice that assignment form is not used since a variable is
 being added[] 
[545] [546] [547]
Underfull \hbox (badness 10000) in paragraph at lines 38048--38050
[][][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions /
[548] [549] [550]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 38275--38275
 []\T1/pcr/m/n/10 srcfile(filename, encoding = getOption("encoding"), Enc = "un
known") 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 38276--38276
 []\T1/pcr/m/n/10 srcfilecopy(filename, lines, timestamp = Sys.time(), isFile =
 FALSE)[] 
[551] [552] [553] [554] [555]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 38607--38607
 []\T1/pcr/m/n/9 startsWith(search(), "package:") # typically at least two FALS
E, nowadays often three 
[556]
Underfull \hbox (badness 6110) in paragraph at lines 38703--38713
[]\T1/ptm/m/n/10 A func-tion []\T1/pcr/m/n/10 .First []\T1/ptm/m/n/10 (and [][]
[]\T1/pcr/m/n/10 .Last[][][][]\T1/ptm/m/n/10 ) can be de-fined in ap-pro-pri-at
e `\T1/pcr/m/n/10 .Rprofile\T1/ptm/m/n/10 ' or
Underfull \hbox (badness 2635) in paragraph at lines 38703--38713
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' files or have been
 saved in `\T1/pcr/m/n/10 .RData\T1/ptm/m/n/10 '. If you want a dif-fer-ent
Underfull \hbox (badness 1237) in paragraph at lines 38703--38713
\T1/ptm/m/n/10 set of pack-ages than the de-fault ones when you start, in-sert 
a call to [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 in the
Underfull \hbox (badness 1231) in paragraph at lines 38703--38713
\T1/pcr/m/n/10 = character()) []\T1/ptm/m/n/10 will at-tach no ex-tra pack-ages
 on startup (only the \T1/ptm/b/n/10 base \T1/ptm/m/n/10 pack-age) (or
Underfull \hbox (badness 1112) in paragraph at lines 38703--38713
\T1/ptm/m/n/10 set []\T1/pcr/m/n/10 R_DEFAULT_PACKAGES=NULL []\T1/ptm/m/n/10 as
 an en-vi-ron-ment vari-able be-fore run-ning \T1/phv/m/n/10 R\T1/ptm/m/n/10 ).
 Us-ing
[557]
Underfull \hbox (badness 10000) in paragraph at lines 38759--38765
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/pcr/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 38759--38765
\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1496) in paragraph at lines 38759--38765
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/pcr/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be
Underfull \hbox (badness 1460) in paragraph at lines 38774--38781
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 38774--38781
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 38774--38781
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
[558]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 38836--38836
 []\T1/pcr/m/n/9 # Variable expansion in double quotes, string literals with ba
ckslashes in[] 
[559] [560] [561]
Underfull \hbox (badness 1484) in paragraph at lines 39009--39013
[]\T1/ptm/m/n/10 alternative to []\T1/pcr/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/pcr/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
Overfull \hbox (60.78088pt too wide) in paragraph at lines 39074--39074
 [] \T1/pcr/m/n/10 assert <- function(exprs) eval.parent(substitute(stopifnot(e
xprs = exprs))) 
[562] [563]
Underfull \hbox (badness 1436) in paragraph at lines 39176--39180
[]\T1/ptm/m/n/10 integer de-ter-min-ing the []\T1/pcr/m/n/10 format()[]\T1/ptm/
m/n/10 ing of sec-onds when needed. Note
[564] [565] [566] [567] [568]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 39569--39569
 []\T1/pcr/m/n/9 z3 # prints without fractional seconds by default, digits.sec 
= NULL ("= 0")[] 
[569]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 39597--39597
 []\T1/pcr/m/n/9 format(s1 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 19
78-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 day
\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ,   len =  7), "%a")[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 39598--39598
 []\T1/pcr/m/n/9 format(s2 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 20
00-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 mon
th\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 12), "%b")[] 
[570]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 39710--39710
 []            \T1/pcr/m/n/10 add the string to the left of the match to the ou
tput.[] 
[571] [572] [573] [574]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 39973--39973
 []        \T1/pcr/m/n/10 exdent = 0, prefix = "", simplify = TRUE, initial = p
refix)[] 
[575]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 40017--40017
 []\T1/pcr/m/n/9 x <- paste(readLines(file.path(R.home("doc"), "THANKS")), coll
apse = "\n")[] 
[576] [577] [578] [579] [580] [581]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 40464--40464
 []\T1/pcr/m/n/9 ## In fact, you can pass vectors into several arguments, and e
verything gets added.[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 40467--40467
 []\T1/pcr/m/n/9 ## If there are missing values, the sum is unknown, i.e., also
 missing, ....[] 
[582]
Underfull \hbox (badness 10000) in paragraph at lines 40518--40525
[]\T1/ptm/m/n/10 integer, used for num-ber for-mat-ting with [][][]\T1/pcr/m/n/
10 signif[][][]() []\T1/ptm/m/n/10 (for
Underfull \hbox (badness 10000) in paragraph at lines 40518--40525
[]\T1/pcr/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][][]\T1/pcr/m/n/10 form
at[][][]() []\T1/ptm/m/n/10 (for []\T1/pcr/m/n/10 summary.data.frame[]\T1/ptm/m
/n/10 ).
[583]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 40571--40571
 []\T1/pcr/m/n/9 summary(attenu, digits = 4) #-> summary.data.frame(...), defau
lt precision 
[584] [585] [586] [587] [588]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 40885--40885
 []    \T1/pcr/m/n/9 cat(ch,":", switch(EXPR = ch, a =, A = 1, b = 2:3, "Otherw
ise: last"),"\n")[] 
[589] [590] [591]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 41090--41090
 []\T1/pcr/m/n/9 if(.Platform$OS.type == "unix") ## on Unix-alikes such Linux, 
macOS, FreeBSD:[] 
[592]
Underfull \hbox (badness 2293) in paragraph at lines 41120--41126
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-
Underfull \hbox (badness 1237) in paragraph at lines 41120--41126
\T1/ptm/m/n/10 tails of wild-cards ex-pan-sion, see your sys-tem's doc-u-men-ta
-tion on the []\T1/pcr/m/n/10 glob []\T1/ptm/m/n/10 sys-tem call.
Underfull \hbox (badness 4792) in paragraph at lines 41139--41144
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/pcr/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
Underfull \hbox (badness 1107) in paragraph at lines 41139--41144
[]\T1/pcr/m/n/10 Sys.glob("*.RData") []\T1/ptm/m/n/10 may or may not match `\T1
/pcr/m/n/10 .RData\T1/ptm/m/n/10 ' but will not usu-ally match
[593] [594] [595] [596]
Underfull \hbox (badness 10000) in paragraph at lines 41427--41431
[]\T1/pcr/m/n/10 sys.status() []\T1/ptm/m/n/10 re-turns a list with com-po-nent
s []\T1/pcr/m/n/10 sys.calls[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sys.parents []\
T1/ptm/m/n/10 and
Underfull \hbox (badness 1584) in paragraph at lines 41442--41445
[]\T1/pcr/m/n/10 sys.call []\T1/ptm/m/n/10 re-turns a call, []\T1/pcr/m/n/10 sy
s.function []\T1/ptm/m/n/10 a func-tion def-i-ni-tion, and []\T1/pcr/m/n/10 sys
.frame []\T1/ptm/m/n/10 and
[597] [598]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 41580--41580
 []\T1/pcr/m/n/9 is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths
), keepNA=TRUE))[] 
[599]
Overfull \hbox (19.22812pt too wide) in paragraph at lines 41661--41661
 []\T1/pcr/m/n/9 print(Sys.setenv(R_TEST = "testit", "A+C" = 123))  # \TS1/cmtt
/m/n/9 `\T1/pcr/m/n/9 A+C\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 could also be used 
[600] [601] [602]
Underfull \hbox (badness 1082) in paragraph at lines 41806--41809
[]\T1/ptm/m/n/10 logical. If []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
Underfull \hbox (badness 10000) in paragraph at lines 41833--41835
[][][]\T1/pcr/m/n/10 source[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 lo
adNamespace[][][] []\T1/ptm/m/n/10 which is called from [][][]\T1/pcr/m/n/10 li
brary[][][](.) []\T1/ptm/m/n/10 and uses
[603] [604] [605]
Underfull \hbox (badness 1038) in paragraph at lines 41999--42002
[]\T1/ptm/m/n/10 a log-i-cal (not []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 ) in-di-c
at-ing whether mes-sages writ-ten to `\T1/pcr/m/n/10 stdout\T1/ptm/m/n/10 ' or
[606] [607] [608] [609] [610]
Underfull \hbox (badness 1442) in paragraph at lines 42364--42368
\T1/ptm/m/n/10 con-sider it to be piped or redi-rected: []\T1/pcr/m/n/10 stdout
 = TRUE []\T1/ptm/m/n/10 uses a pipe whereas []\T1/pcr/m/n/10 stdout =
[611] [612] [613] [614]
Underfull \hbox (badness 4096) in paragraph at lines 42618--42621
[]\T1/ptm/m/n/10 Use [][][]\T1/pcr/m/n/10 ftable[][][] []\T1/ptm/m/n/10 for pri
nt-ing (and more) of mul-ti-di-men-sional ta-bles. [][][]\T1/pcr/m/n/10 margin.
table[][][][]\T1/ptm/m/n/10 ,
[615]
Underfull \hbox (badness 7888) in paragraph at lines 42732--42736
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/pcr/m/n/10 bin []\T1/ptm/m/n/10 can
 have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/pcr/
m/n/10 length(bin) >
[616] [617] [618]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 42894--42894
 []            \T1/pcr/m/n/9 matrix(c(1L, 2L, NA, 3L), 2, dimnames = list(c("1"
, "2"), c("A", "B")))),[] 
Overfull \hbox (30.0281pt too wide) in paragraph at lines 42896--42896
 []            \T1/pcr/m/n/9 array(list(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 2\TS1/cm
tt/m/n/9 ` \T1/pcr/m/n/9 = structure(c(2, 5.75, 9.5, 13.25, 17), names = nq),[]
 
Overfull \hbox (55.67578pt too wide) in paragraph at lines 42898--42898
 []                 \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 4\TS1/cmtt/m/n/9 ` \T1/pcr/m
/n/9 = NULL, \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 5\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 = 
NULL), dim=4, dimnames=list(as.character(2:5)))))[] 
Underfull \hbox (badness 10000) in paragraph at lines 42911--42913
[]\T1/pcr/m/n/10 removeTaskCallback []\T1/ptm/m/n/10 un-registers a func-tion t
hat was reg-is-tered ear-lier via
[619]
Underfull \hbox (badness 10000) in paragraph at lines 42991--42994
[][][]\T1/pcr/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer .
[620] [621]
Underfull \hbox (badness 3872) in paragraph at lines 43109--43112
[]\T1/ptm/m/n/10 Duncan Tem-ple Lang (2001) \T1/ptm/m/it/10 Top-level Task Call
-backs in R\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / developer .
[622]
Underfull \hbox (badness 5475) in paragraph at lines 43175--43179
[][][]\T1/pcr/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/pcr/m/n/10 https : / /
[623] [624] [625] [626] [627] [628]
Underfull \hbox (badness 1655) in paragraph at lines 43598--43605
\T1/ptm/m/n/10 may also be known as `[]\T1/pcr/m/n/10 GB[]\T1/ptm/m/n/10 ', `[]
\T1/pcr/m/n/10 GB-Eire[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Belfast[]\T1
/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Guernsey[]\T1/ptm/m/n/10 ',
Underfull \hbox (badness 2253) in paragraph at lines 43606--43611
[]\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-turns a char-ac-ter vec-tor, se
e the ex-am-ples for typ-i-cal cases. It may
Underfull \hbox (badness 1655) in paragraph at lines 43606--43611
\T1/ptm/m/n/10 have an at-tribute []\T1/pcr/m/n/10 "Version"[]\T1/ptm/m/n/10 , 
some-thing like `[]\T1/pcr/m/n/10 "2023a"[]\T1/ptm/m/n/10 '. (It does on sys-te
ms us-ing
[629]
Underfull \hbox (badness 4467) in paragraph at lines 43656--43665
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-
turns the time-zone names known to the cur-rently se-
Underfull \hbox (badness 3954) in paragraph at lines 43656--43665
\T1/ptm/m/n/10 lected Ol-son/IANA database. The system-specific lo-ca-tion in t
he file sys-tem varies,
[630]
Underfull \hbox (badness 1337) in paragraph at lines 43759--43767
\T1/ptm/m/n/10 a file `\T1/pcr/m/n/10 localtime\T1/ptm/m/n/10 ', usu-ally un-de
r `\T1/pcr/m/n/10 /etc\T1/ptm/m/n/10 ' (but pos-si-bly un-der `\T1/pcr/m/n/10 /
usr/local/etc\T1/ptm/m/n/10 ' or
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[]\T1/ptm/m/n/10 `Because the time zone iden-ti-fier is ex-tracted from the sym
-link tar-get name of
[631]
Underfull \hbox (badness 3460) in paragraph at lines 43824--43827
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / data . iana . org /
Underfull \hbox (badness 4429) in paragraph at lines 43828--43830
[][][]$\T1/pcr/m/n/10 https : / / data . iana . org / time-[]zones / theory . h
tml$[][] \T1/ptm/m/n/10 for the `rules' of the Ol-
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 []\T1/pcr/m/n/9 ## typically some acronyms/aliases such as "UTC", "NZ", "MET",
 "Eire", ..., but[] 
[632] [633] [634] [635] [636]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 44180--44180
 []\T1/pcr/m/n/9 trace(pt, tracer = quote(cat(sprintf("tracing pt(*, ncp = %.15
g)\n", ncp))),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 44182--44182
 []\T1/pcr/m/n/9 power.t.test(20, 1, power=0.8, sd=NULL)  ##--> showing the ncp
 root finding:[] 
[637] [638]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44282--44282
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
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 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
[639] [640] [641]
Underfull \hbox (badness 6542) in paragraph at lines 44558--44560
[]\T1/pcr/m/n/10 cospi(x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sinpi(x)[]\T1/ptm/
m/n/10 , and []\T1/pcr/m/n/10 tanpi(x)[]\T1/ptm/m/n/10 , com-pute []\T1/pcr/m/n
/10 cos(pi*x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sin(pi*x)[]\T1/ptm/m/n/10 , an
d
[642] [643]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 44677--44677
 []\T1/pcr/m/n/10 trimws(x, which = c("both", "left", "right"), whitespace = "[
 \t\r\n]") 
[644]
Underfull \hbox (badness 1708) in paragraph at lines 44745--44753
[]\T1/pcr/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
 er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 3713) in paragraph at lines 44745--44753
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/pcr/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[645]
Underfull \hbox (badness 4859) in paragraph at lines 44785--44790
[][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 for set-ting er-ror han-dle
rs and sup-press-ing the print-ing of er-ror mes-sages;
[646]
Underfull \hbox (badness 3895) in paragraph at lines 44847--44859
[]\T1/ptm/m/n/10 A char-ac-ter string. The pos-si-ble val-ues are listed in the
 struc-ture []\T1/pcr/m/n/10 TypeTable []\T1/ptm/m/n/10 in
Underfull \hbox (badness 1303) in paragraph at lines 44847--44859
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/main/util.c\T1/ptm/m/n/10 '. Cur-rent val-ue
s are the vec-tor types []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "integer"[]\T1/ptm/m/n/10 ,
[647] [648] [649] [650] [651]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 45195--45195
 []\T1/pcr/m/n/9 ll <- list(as.name("sinc"), quote( a + b ), 1:10, letters, exp
ression(1+x))[] 
[652] [653]
Underfull \hbox (badness 1137) in paragraph at lines 45289--45296
[]\T1/ptm/m/n/10 When a func-tion call-ing []\T1/pcr/m/n/10 UseMethod("fun") []
\T1/ptm/m/n/10 is ap-plied to an ob-ject with class vec-tor
[654] [655] [656] [657] [658]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 45667--45667
 []\T1/pcr/m/n/9 (xx <- intToUtf8(x, , TRUE)) # will only display in some local
es and fonts[] 
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 []\T1/pcr/m/n/9 system(paste("od -x", foo)) # 2-byte units, correct on little-
endian platforms[] 
[659]
Underfull \hbox (badness 2057) in paragraph at lines 45742--45748
[][][]\T1/pcr/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/pcr/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3861) in paragraph at lines 45751--45756
[][][]\T1/pcr/m/n/10 dir.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 di
r.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 normalizePath[][][][]\T1/
ptm/m/n/10 , [][][]\T1/pcr/m/n/10 path.expand[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 pipe[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Sys.glob[][][][]\
T1/ptm/m/n/10 ,
[660]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 45844--45844
 []\T1/pcr/m/n/9 try( substr(x, 1,1) ) # gives \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 in
valid multibyte string\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 error in a UTF-8 locale[] 
[661]
Underfull \hbox (badness 1803) in paragraph at lines 45907--45910
[]\T1/ptm/m/n/10 The atomic modes are []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric" []\
T1/ptm/m/n/10 (syn-onym []\T1/pcr/m/n/10 "double"[]\T1/ptm/m/n/10 ),
Underfull \hbox (badness 3471) in paragraph at lines 45911--45917
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 mode = "any"[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 is.vector []\T1/ptm/m/n/10 may re-turn []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/
n/10 for the atomic modes, [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 and
[662] [663] [664] [665]
Underfull \hbox (badness 3668) in paragraph at lines 46140--46142
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[666]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 46246--46246
 []      \T1/pcr/m/n/10 header = ngettext(n, "Warning message:\n", "Warning mes
sages:\n"),[] 
[667]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 46321--46321
 []\T1/pcr/m/n/9 ## at the end prints all three warnings, from the \TS1/pcr/m/n
/9 '\T1/pcr/m/n/9 option(warn = 0)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 above[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 46329--46329
 []\T1/pcr/m/n/9 x <- 1:36; for(n in 1:13) for(m in 1:12) A <- matrix(x, n,m) #
 There were 105 warnings ...[] 
[668]
Underfull \hbox (badness 1783) in paragraph at lines 46394--46396
[]\T1/pcr/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 months []\T1/pt
m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[669]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 46424--46424
 []\T1/pcr/m/n/9 ## Show how easily you get month, day, year, day (of {month, w
eek, yr}), ... :[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 46436--46436
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Even simpler:  Date -> Matrix
 - dropping time info {sec,min,hour, isdst}[] 
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 []\T1/pcr/m/n/9 d2mat(seq(as.Date("2000-02-02"), by=1, length.out=30)) # has R
 1.0.0\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s release date[] 
[670]
Underfull \hbox (badness 10000) in paragraph at lines 46501--46506
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 arr.ind == TRUE []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 x []\T1/ptm/m/n/10 is an [][][]\T1/pcr/m/n/10 array[][][] []\T1/ptm
/m/n/10 (has a [][][]\T1/pcr/m/n/10 dim[][][] []\T1/ptm/m/n/10 at-tribute), the
 re-sult is
Underfull \hbox (badness 2564) in paragraph at lines 46501--46506
[]\T1/pcr/m/n/10 arrayInd(which(x), dim(x), dimnames(x))[]\T1/ptm/m/n/10 , name
ly a ma-trix whose rows each
[671]
Underfull \hbox (badness 2818) in paragraph at lines 46597--46603
[]\T1/ptm/m/n/10 For a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 vec-
tor []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with both []\T1/pcr/m/n/10 FALSE []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 val-ues, []\T1/pcr/m/n/10
 which.min(x) []\T1/ptm/m/n/10 and
[672]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 46632--46632
 []\T1/pcr/m/n/9 ## Find the first occurrence, i.e. the first TRUE, if there is
 at least one:[] 
[673] [674] [675] [676] [677] [678]
Underfull \hbox (badness 2846) in paragraph at lines 47091--47095
[]\T1/pcr/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[679]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 47131--47131
 []\T1/pcr/m/n/9 .packages(all.available = TRUE) # return all available as char
acter vector[] 
Underfull \hbox (badness 3209) in paragraph at lines 47152--47156
[]\T1/pcr/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[680]) (./compiler-pkg.tex
Chapter 2.
[681]
Underfull \hbox (badness 2884) in paragraph at lines 106--120
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 options []\T1/ptm/m/n/10 ar-gu-ment can b
e used to con-trol com-piler op-er-a-tion. There are cur-
Underfull \hbox (badness 10000) in paragraph at lines 106--120
\T1/ptm/m/n/10 rently four op-tions: []\T1/pcr/m/n/10 optimize[]\T1/ptm/m/n/10 
, []\T1/pcr/m/n/10 suppressAll[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressUndef
ined[]\T1/ptm/m/n/10 , and
[682] [683] [684]) (./datasets-pkg.tex
Chapter 3.
[685] [686] [687] [688] [689]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 301--301
 []  \T1/pcr/m/n/9 plot(ff, data = anscombe, col = "red", pch = 21, bg = "orang
e", cex = 1.2,[] 
[690]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 379--379
 []\T1/pcr/m/n/9 coplot(accel ~ dist | as.factor(event), data = attenu, show.gi
ven = FALSE)[] 
Underfull \vbox (badness 1472) has occurred while \output is active [691]
[692] [693] [694]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 617--617
 []           \T1/pcr/m/n/9 start = c(lrc = log(.35)), algorithm = "plinear", t
race = TRUE)[] 
[695]
Underfull \hbox (badness 4779) in paragraph at lines 704--707
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[696] [697]
Underfull \hbox (badness 4779) in paragraph at lines 837--840
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[698] [699] [700]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[701]
Underfull \hbox (badness 4779) in paragraph at lines 1152--1155
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[702] [703] [704] [705] [706]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1464--1464
 []\T1/pcr/m/n/9 plot(names(te), te, type = "h", main = f.tit, xlab = "Eruption
 time (sec)")[] 
[707] [708]
Underfull \hbox (badness 10000) in paragraph at lines 1549--1552
[]\T1/ptm/m/n/10 Finally, []\T1/pcr/m/n/10 freeny []\T1/ptm/m/n/10 is a data fr
ame with vari-ables []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lag.q
uarterly.revenue[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2903) in paragraph at lines 1549--1552
[]\T1/pcr/m/n/10 price.index[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 income.level[]\
T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 market.potential []\T1/ptm/m/n/10 ob-taine
d from the above
[709] [710] [711]
Underfull \hbox (badness 4779) in paragraph at lines 1738--1741
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[712]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1832--1832
 []\T1/pcr/m/n/9 model1 <- glm(case ~ spontaneous+induced, data = infert, famil
y = binomial())[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1840--1840
 []  \T1/pcr/m/n/9 model3 <- clogit(case ~ spontaneous+induced+strata(stratum),
 data = infert)[] 
[713] [714]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1956--1956
 []                                        \T1/pcr/m/n/9 sub(" W.",".Width", dn
i3[[2]])))),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1957--1957
 []    \T1/pcr/m/n/9 Species = gl(3, 50, labels = sub("S", "s", sub("V", "v", d
ni3[[3]]))))[] 
[715] [716] [717] [718]
Underfull \hbox (badness 4779) in paragraph at lines 2160--2163
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[719] [720] [721]
Overfull \vbox (4.29591pt too high) has occurred while \output is active
[722] [723] [724] [725] [726]
Underfull \hbox (badness 4779) in paragraph at lines 2725--2728
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[727]
Overfull \vbox (13.87083pt too high) has occurred while \output is active
[728]
Underfull \vbox (badness 2376) has occurred while \output is active [729]
[730] [731] [732] [733]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3154--3154
 []\T1/pcr/m/n/9 pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main = 
1.2, pch = ".")[] 
[734] [735] [736] [737] [738] [739]
Overfull \hbox (47.58038pt too wide) in paragraph at lines 3505--3505
 []\T1/pcr/m/n/9 ## Alaska and Hawaii are placed just off the West Coast (for c
ompact map drawing):[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 3507--3507
 []\T1/pcr/m/n/9 ## state.center2 := version of state.center with "correct" coo
rdinates for AK & HI:[] 
Overfull \hbox (85.38034pt too wide) in paragraph at lines 3508--3508
 []\T1/pcr/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
[740] [741]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3639--3639
 []          \T1/pcr/m/n/9 ## The yearly series *is* close to the averages of t
he monthly one:[] 
[742] [743] [744]
Underfull \hbox (badness 4779) in paragraph at lines 3787--3790
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[745] [746] [747]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3996--3996
 []       \T1/pcr/m/n/9 xlab = "ToothGrowth data: length vs dose, given type of
 supplement")[] 
Underfull \hbox (badness 10000) in paragraph at lines 4034--4036
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/pcr/m/n/10 h
ttps : / / web . archive . org / web /
Underfull \hbox (badness 10000) in paragraph at lines 4034--4036
\T1/pcr/m/n/10 20110523225828 / http : / / www . ltrr . arizona . edu / ~hallma
n / sitephotos /
[748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759]
[760] [761]) (./grDevices-pkg.tex [762]
Chapter 4.
[763] [764] [765] [766]
Underfull \hbox (badness 4752) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/pcr/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/pcr/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
[767] [768] [769] [770]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 519--519
 []\T1/pcr/m/n/10 cairo_pdf(filename = if(onefile) "Rplots.pdf" else "Rplot%03d
.pdf",[] 
[771] [772] [773] [774] [775] [776] [777] [778] [779] [780]
Underfull \hbox (badness 5175) in paragraph at lines 1193--1195
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[781] [782] [783]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1364--1364
 []\T1/pcr/m/n/9 zapsmall(lab <- convertColor(cols, from = "sRGB", to = "Lab", 
scale.in = 255))[] 
[784] [785] [786]
Underfull \hbox (badness 3302) in paragraph at lines 1625--1629
[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/pcr/m/n/10 c("LinearGradient", "RadialGradient", "TilingPattern")
[787] [788] [789] [790] [791]
Underfull \hbox (badness 1565) in paragraph at lines 1916--1921
[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 dev.print []\T1/ptm/m/n/10 i
s to pro-duce and print a postscript copy. This will not
Underfull \hbox (badness 1354) in paragraph at lines 1916--1921
\T1/ptm/m/n/10 sys-tem: see [][][]\T1/pcr/m/n/10 postscript[][][] []\T1/ptm/m/n
/10 for how to set this up. Win-dows users may pre-fer to use
[792]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 1999--1999
 []\T1/pcr/m/n/10 dev2bitmap(file, type = "png16m", height = 7, width = 7, res 
= 72,[] 
[793]
Underfull \hbox (badness 1184) in paragraph at lines 2040--2050
[]\T1/ptm/m/n/10 The types avail-able will de-pend on the ver-sion of []\T1/pcr
/m/n/10 ghostscript[]\T1/ptm/m/n/10 , but are likely to in-
Underfull \hbox (badness 2057) in paragraph at lines 2040--2050
[]\T1/pcr/m/n/10 "tiffg4"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffgray"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "tifflzw"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffp
ack"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiff12nc"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "tiff24nc"[]\T1/ptm/m/n/10 ,
[794]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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 []\T1/pcr/m/n/10 embedGlyphs(file, glyphInfo, outfile = file, options = charac
ter())[] 
[797]
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 are given, then it uses those in a call to []\T1/pcr/m/n/10 se
tGraphicsEventHandlers []\T1/ptm/m/n/10 to re-place
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\T1/ptm/m/n/10 any ex-ist-ing han-dlers in the cur-rent de-vice. This is for co
m-pat-i-bil-ity with pre-2.12.0
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\T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions. The cur-rent nor-mal way to set up e
vent han-dlers is to set them us-ing
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[]\T1/pcr/m/n/10 setGraphicsEventHandlers []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 
setGraphicsEventEnv []\T1/ptm/m/n/10 on one or more graph-ics
[800] [801]
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 []\T1/pcr/m/n/9 dragplot <- function(..., xlim = NULL, ylim = NULL, xaxs = "r"
, yaxs = "r") {[] 
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[803] [804]
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 []\T1/pcr/m/n/10 gray.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE) 
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 []\T1/pcr/m/n/10 grey.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE)[] 
[805] [806] [807] [808] [809]
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[811] [812] [813] [814]
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 []\T1/pcr/m/n/10 colorConverter(toXYZ, fromXYZ, name, white = NULL, vectorized
 = FALSE)[] 
[815]
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 []\T1/pcr/m/n/9 zapsmall(luv <- convertColor(cols, from = "sRGB", to = "Luv", 
scale.in = 255))[] 
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 []\T1/pcr/m/n/9 (hex <- convertColor(luv, from = "Luv",  to = hexcolor, scale.
out = NULL))[] 
[816] [817] [818]
Underfull \hbox (badness 10000) in paragraph at lines 3665--3671
[]\T1/pcr/m/n/10 nclass.FD []\T1/ptm/m/n/10 uses the Freedman-Diaconis choice b
ased on the inter-quartile range
[819]
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 []\T1/pcr/m/n/10 palette.colors(n = NULL, palette = "Okabe-Ito", alpha, recycl
e = FALSE)[] 
[820]
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 []\T1/pcr/m/n/9 (palette(gray(seq(0,.9,length.out = 25)))) # gray scales; prin
t old palette[] 
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 []\T1/pcr/m/n/9 ## Demonstrate the colors 1:8 in different palettes using a cu
stom matplot()[] 
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 []    \T1/pcr/m/n/9 matplot(x, type = "l", lwd = 4, lty = 1, col = 1:8, ylab =
 "", main=main)[] 
[821]
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 []\T1/pcr/m/n/10 hcl.colors(n, palette = "viridis", alpha = NULL, rev = FALSE,
 fixup = TRUE) 
[822]
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[]\T1/ptm/m/n/10 the type of palettes to list: []\T1/pcr/m/n/10 "qualitative"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sequential"[]\T1/ptm/m/n/10 ,
[823]
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[]\T1/ptm/m/n/10 For ex-am-ple, []\T1/pcr/m/n/10 "Dark 3" []\T1/ptm/m/n/10 work
s well for shad-ing points or lines in up to five groups,
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\T1/pcr/m/n/10 wikipedia . org / w / index . php ? title = HCL _ color _ space 
& oldid = 883465135$[][]\T1/ptm/m/n/10 .
[824]
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[]\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
 give a C in-te-ger for-mat such as
[826] [827] [828] [829] [830]
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 fonts[]\T1/ptm/m/n/10 ,
[831] [832]pdfTeX warning (ext4): destination with the same identifier (name{Rf
n.symbol}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4681 \aliasA{symbol}{plotmath}{symbol}
                                         [833] [834] [835] [836] [837] [838]
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 []     \T1/pcr/m/n/10 compression = c("none", "rle", "lzw", "jpeg", "zip", "lz
w+p", "zip+p"),[] 
[839] [840]
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, [][]$\T1/pcr/m/n/10 https : / / ww
w . iso . org / standard / 34342 . html$[][]\T1/ptm/m/n/10 . See also
[841]
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 []\T1/pcr/m/n/9 ## Not run: dev.print(png, file = "myplot.png", width = 1024, 
height = 768)[] 
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[]\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
 give a []\T1/pcr/m/n/10 printf []\T1/ptm/m/n/10 for-mat such as
[842]
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[]\T1/ptm/m/n/10 as `\T1/pcr/m/n/10 "CP1250.enc"\T1/ptm/m/n/10 ' (Cen-tral Eu-r
o-pean), []\T1/pcr/m/n/10 "CP1251.enc"
[843] [844]
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[845] [846]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[][][]\T1/pcr/m/n/10 postscriptFonts[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 Devices[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 check.options[][][]
 []\T1/ptm/m/n/10 which is called from both
[847] [848]
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[]\T1/pcr/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Bookman"[]\T1
/ptm/m/n/10 , []\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "He
lvetica"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10 
,
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[]\T1/pcr/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/pc
r/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "URWBookman"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusMon"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusSan" []\T1/ptm/m/n/10 (syn-onym []\T1/p
cr/m/n/10 "URWHelvetica"[]\T1/ptm/m/n/10 ),
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[]\T1/ptm/m/n/10 There are also map-pings for []\T1/pcr/m/n/10 "ComputerModern"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ComputerModernItalic" []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 "Japan1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1HeiMin"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1GothicBBB"[]\T1/ptm/m/n/10 , and []\T1/p
cr/m/n/10 "Japan1Ryumin" []\T1/ptm/m/n/10 for
[849]
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[]\T1/pcr/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/p
cr/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[850] [851]
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 []\T1/pcr/m/n/9 ## time ranges in diverse scales:% also in ../../../../tests/r
eg-tests-1c.R[] 
[852]
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 []\T1/pcr/m/n/10 quartz.save(file, type = "png", device = dev.cur(), dpi = 100
, ...)[] 
[853] [854]
Underfull \hbox (badness 10000) in paragraph at lines 6162--6164
[]\T1/ptm/m/n/10 Calling []\T1/pcr/m/n/10 quartz() []\T1/ptm/m/n/10 sets [][][]
\T1/pcr/m/n/10 .Device[][][] []\T1/ptm/m/n/10 to []\T1/pcr/m/n/10 "quartz" []\T
1/ptm/m/n/10 for on-screen de-vices and to
[855] [856] [857] [858] [859]
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 []\T1/pcr/m/n/9 rgb((0:15)/15, green = 0, blue = 0, names = paste("red", 0:15,
 sep = "."))[] 
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[]\T1/pcr/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
[860] [861] [862] [863] [864] [865]
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 []\T1/pcr/m/n/10 windows(width, height, pointsize, record, rescale, xpinch, yp
inch, 
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 []\T1/pcr/m/n/10 win.metafile(filename = "", width = 7, height = 7, pointsize 
= 12,[] 
[866] [867] [868] [869]
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 record[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 rescale[]\T1/ptm/m/n/10
 ,
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[]\T1/pcr/m/n/10 xpinch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 ypinch[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 canvas[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 gamma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 xpos[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 ypos[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 buffered[]\T1/
ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 restoreConsole[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 clickToConfi
rm[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 
fillOddEven []\T1/ptm/m/n/10 and
[870]
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 []\T1/pcr/m/n/9 windows()  # make sure we have the right device type (availabl
e on Windows only)[] 
[871]
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[]\T1/ptm/m/n/10 The \T1/phv/m/n/10 R \T1/ptm/m/n/10 func-tion is a wrap-per fo
r two de-vices, one based on Xlib ([][]$\T1/pcr/m/n/10 https : / /
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\T1/pcr/m/n/10 en . wikipedia . org / wiki / Xlib$[][]\T1/ptm/m/n/10 ) and one 
us-ing cairo-graph-ics ([][]$\T1/pcr/m/n/10 https : / / www .
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 []    \T1/pcr/m/n/10 fonts, family, xpos, ypos, title, type, antialias, symbol
family)[] 
[872]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[873]
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[]\T1/pcr/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
[874]
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[]\T1/ptm/m/n/10 Problems with in-cor-rect ren-der-ing of sym-bols (e.g., of []
\T1/pcr/m/n/10 quote(pi) []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 expression(10^degree)[]\T1/ptm/m/n/10 ) have been seen on Linu
x sys-tems which have the Wine
[875]
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[]\T1/pcr/m/n/10 type = "Xlib" []\T1/ptm/m/n/10 sup-ports `True-Color', `Pseu-d
o-Color', `GrayScale', []\T1/pcr/m/n/10 StaticGray []\T1/ptm/m/n/10 and
[876]
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 = 6, xpos = 0,[] 
[877] [878]
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[]\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica" []\T1
/ptm/m/n/10 (the de-fault), []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10
 ,
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[]\T1/ptm/m/n/10 Windows users can make use of Win-FIG ([][]$\T1/pcr/m/n/10 htt
p : / / www . schmidt-[]web-[]berlin . de /
[879] [880]
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 []\T1/pcr/m/n/9 op <- options(warn = 2)# ==> warnings would be errors, we supp
ress the one "we know":[] 
[881]
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., []\T1/pcr/m/n/10
 number[i] []\T1/ptm/m/n/10 is the mul-ti-plic-ity of
[882] [883]) (./graphics-pkg.tex [884]
Chapter 5.
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[]\T1/ptm/m/n/10 For a com-plete list of func-tions with in-di-vid-ual help pag
es, use []\T1/pcr/m/n/10 library(help =
[885] [886] [887] [888] [889] [890] [891]
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 []  \T1/pcr/m/n/10 gap.axis <- if(perpendicular(side, las)) 0.25 else 1[] 
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[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 at = NULL[]\T1/ptm/m/n/10 , pretty tick 
mark lo-ca-tions are com-puted in-ter-nally (the same way
[892] [893]
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 []\T1/pcr/m/n/9 ## now shrink the window (in x- and y-direction) and observe t
he axis labels drawn[] 
[894]
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 []\T1/pcr/m/n/9 axis.Date(3, at = as.integer(as.Date("2023-04-01")), col.axis 
= "darkgreen")[] 
[895]
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 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.POSIXct("2022-10-01 00:01:30"), col.ax
is = "orange")[] 
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0")) + 0.25,[] 
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 []                \T1/pcr/m/n/9 col.axis = "forestgreen", col = "darkgreen", m
gp = c(3,2,0))[] 
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 []\T1/pcr/m/n/9 plot(data.frame(HST, y = 1), xaxt = "n", xlab = "Hawaii Standa
rd Time (HST)")[] 
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[]\T1/ptm/m/n/10 numeric vec-tor of length three, de-fault-ing to [][][]\T1/pcr
/m/n/10 par[][][]("xaxp") []\T1/ptm/m/n/10 or
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[][][]\T1/pcr/m/n/10 par[][][]("yaxp") []\T1/ptm/m/n/10 de-pend-ing on the []\T
1/pcr/m/n/10 side []\T1/ptm/m/n/10 ar-gu-ment ([]\T1/pcr/m/n/10 par("xaxp") []\
T1/ptm/m/n/10 if
[896] [897]
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 []                 \T1/pcr/m/n/9 axp = c(get_axp(usr.i), n = 3), log = TRUE, n
intLog = 5))[] 
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 []        \T1/pcr/m/n/10 add = FALSE, ann = !add && par("ann"), args.legend = 
NULL, ...)[] 
[898] [899]
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[][][]\T1/pcr/m/n/10 plot[][][](..., type = "h")[]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 dotchart[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 hist[][][] []\T1
/ptm/m/n/10 for bars of a \T1/ptm/m/it/10 con-tin-u-ous \T1/ptm/m/n/10 vari-abl
e.
[900]
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 []        \T1/pcr/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
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 []\T1/pcr/m/n/9 (xt <- xtabs(Freq ~ Survived + Class + Sex, d.Titanic, subset 
= Age=="Adult"))[] 
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 []\T1/pcr/m/n/9 mosaicplot(xt[,,"Male"], main = "mosaicplot(Freq ~ Class + Sur
vived, *)", color=TRUE)[] 
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[902] [903] [904]
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 []\T1/pcr/m/n/9 # *add* notches (somewhat funny here <--> warning "notches .. 
outside hinges"):[] 
[905] [906] [907]
Underfull \hbox (badness 2503) in paragraph at lines 1484--1493
\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 horizontal []\T1/ptm/m/n/10 is false, and 
[]\T1/pcr/m/n/10 xlim []\T1/ptm/m/n/10 hor-i-zon-tally. []\T1/pcr/m/n/10 xaxt[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yaxt[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3375) in paragraph at lines 1519--1521
[]\T1/ptm/m/n/10 whisker line type (de-fault: []\T1/pcr/m/n/10 "dashed"[]\T1/pt
m/m/n/10 ),
[908]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1593--1593
 []\T1/pcr/m/n/9 boxplot(z,   col.axis = "skyblue3", main = "boxplot(*, col.axi
s=..,main=..)")[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1594--1594
 []\T1/pcr/m/n/9 plot(z[[1]], col.axis = "skyblue3", main =    "plot(*, col.axi
s=..,main=..)")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1600--1600
 []\T1/pcr/m/n/9 splus <- list(boxwex = 0.4, staplewex = 1, outwex = 1, boxfill
 = "grey40",[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 1601--1601
 []              \T1/pcr/m/n/9 medlwd = 3, medcol = "white", whisklty = 3, outl
ty = 1, outpch = NA)[] 
[909]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1634--1634
 []  \T1/pcr/m/n/10 yaxlabels = NULL, xlim = NULL, ylim = c(0, 1), weights = NU
LL, ...)[] 
[910] [911] [912] [913]
Underfull \hbox (badness 10000) in paragraph at lines 1907--1913
[][][]\T1/pcr/m/n/10 contourLines[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
filled.contour[][][] []\T1/ptm/m/n/10 for color-filled con-tours, [][][]\T1/pcr
/m/n/10 contourplot[][][] []\T1/ptm/m/n/10 (and
[914]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1927--1927
 []\T1/pcr/m/n/9 contour(x, x, z, ylim = c(-6, 6), nlevels = 20, lty = 2, metho
d = "simple",[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1939--1939
 []\T1/pcr/m/n/9 contour(z, levels=levs[-c(1,length(levs))], col = 1:5, lwd = 1
:3 *1.5, lty = 1:3)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1955--1955
 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1964--1964
 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
[915] [916]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2049--2049
 []\T1/pcr/m/n/10 coplot(formula, data, given.values, panel = points, rows, col
umns, 
[917] [918]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 2178--2178
 []\T1/pcr/m/n/9 coplot(lat ~ long | depth, data = quakes, given.values = given
.depth, rows = 1)[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2183--2183
 []\T1/pcr/m/n/9 coplot(ll.dm, data = quakes, number = c(4, 7), show.given = c(
TRUE, FALSE))[] 
[919] [920]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2357--2357
 []\T1/pcr/m/n/10 dotchart(x, labels = NULL, groups = NULL, gdata = NULL, offse
t = 1/8, 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 2358--2358
 []         \T1/pcr/m/n/10 ann = par("ann"), xaxt = par("xaxt"), frame.plot = T
RUE, log = "",[] 
[921]
Underfull \hbox (badness 1430) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/pcr/m/n/10 
"n" []\T1/ptm/m/n/10 to sup-press and see also
[922]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 2469--2469
 []               \T1/pcr/m/n/10 color.palette = function(n) hcl.colors(n, "YlO
rRd", rev = TRUE),[] 
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[923]
Underfull \hbox (badness 7273) in paragraph at lines 2563--2567
[][][]\T1/pcr/m/n/10 contour[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 image
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 hcl.colors[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 gray.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 palette[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 contourplot[][][] []\T1/p
tm/m/n/10 and
[924] [925] [926] [927]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2811--2811
 []\T1/pcr/m/n/9 ## maybe change the desired number of tick marks:  par(lab = c
(mx, my, 7))[] 
[928]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2848--2848
 []     \T1/pcr/m/n/10 density = NULL, angle = 45, col = "lightgray", border = 
NULL,[] 
[929] [930]
Underfull \hbox (badness 1226) in paragraph at lines 2975--2979
\T1/pcr/m/n/10 1)[]\T1/ptm/m/n/10 , they are the rel-a-tive fre-quen-cies []\T1
/pcr/m/n/10 counts/n []\T1/ptm/m/n/10 and in gen-eral sat-isfy
[931]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3028--3028
 []\T1/pcr/m/n/9 ## Extreme outliers; the "FD" rule would take very large numbe
r of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 breaks\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3032--3032
 []\T1/pcr/m/n/9 length(hh$breaks) ## typically 1 million -- though 1e6 was "a 
suggestion only"[] 
[932]
Underfull \hbox (badness 10000) in paragraph at lines 3094--3097
[][][]\T1/ptm/m/n/10 graphical pa-ram-e-ters[][][], or ar-gu-ments to [][][]\T1
/pcr/m/n/10 hist.default[][][] []\T1/ptm/m/n/10 such as
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3145--3145
 []\T1/pcr/m/n/9 ## The default fuzz in hist.default()  "kills" this, with a "w
rong" message:[] 
[933] [934] [935]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3309--3309
 []\T1/pcr/m/n/9 identifyPch <- function(x, y = NULL, n = length(x), plot = FAL
SE, pch = 19, ...)[] 
Overfull \hbox (79.98035pt too wide) in paragraph at lines 3314--3314
 []        \T1/pcr/m/n/9 ans <- identify(x[!sel], y[!sel], labels = which(!sel)
, n = 1, plot = plot, ...)[] 
[936] [937]
Underfull \hbox (badness 10000) in paragraph at lines 3456--3461
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 useRaster []\T1/ptm/m/n/10 is not spec-i-f
ied, raster im-ages are used when the
Underfull \hbox (badness 10000) in paragraph at lines 3456--3461
[][][]\T1/pcr/m/n/10 getOption[][][]("preferRaster") []\T1/ptm/m/n/10 is true, 
the grid is reg-u-lar and ei-ther
Underfull \hbox (badness 10000) in paragraph at lines 3456--3461
[][][]\T1/pcr/m/n/10 dev.capabilities[][][]("rasterImage")$rasterImage []\T1/pt
m/m/n/10 is []\T1/pcr/m/n/10 "yes" []\T1/ptm/m/n/10 or it is
Overfull \hbox (31.3804pt too wide) in paragraph at lines 3491--3491
 []\T1/pcr/m/n/9 # Visualize as matrix.  Need to transpose matrix and then flip
 it horizontally:[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3493--3493
 []\T1/pcr/m/n/9 imageM <- function(m, grid = max(dim(m)) <= 25, asp = (nrow(m)
-1)/(ncol(m)-1), ...) {[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3496--3496
 []        \T1/pcr/m/n/9 axis(side, at=at, labels=as.character(j+1L), col="gray
", col.axis=1, ...)[] 
[938] [939] [940]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3653--3653
 []\T1/pcr/m/n/9 barplot(yhist$counts, axes = FALSE, xlim = c(0, top), space = 
0, horiz = TRUE)[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 3672--3672
 []       \T1/pcr/m/n/10 box.lwd = par("lwd"), box.lty = par("lty"), box.col = 
par("fg"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3676--3676
 []       \T1/pcr/m/n/10 text.font = NULL, merge = do.lines && has.pch, trace =
 FALSE,[] 
[941] [942] [943]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3861--3861
 []  \T1/pcr/m/n/9 text  (1, y.leg[i] - 0.1, paste("cex=", formatC(cexv[i])), c
ex = 0.8, adj = 0)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3862--3862
 []  \T1/pcr/m/n/9 legend(3, y.leg[i], leg.txt, pch = "sSvV", col = c(1, 3), ce
x = cexv[i])[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3866--3866
 []       \T1/pcr/m/n/9 cex = 1+(-1:2)/8, trace = TRUE)# trace: show computed l
engths & coords[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3876--3876
 []  \T1/pcr/m/n/9 title("legend(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 top\TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 , lty = c(2, -1, 1), pch = c(NA, 3, 4), merge = TRUE)",[] 
[944]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3907--3907
 []                      \T1/pcr/m/n/9 "text(c(3,3),2:3,\"c(rect(...)\")"), adj
 = c(0, 0.3))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3933--3933
 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Filled\TS1/pcr/m/n/9 ' \T1/pc
r/m/n/9 boxes -- see also example(barplot) which may call legend(*, fill=)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3935--3935
 []\T1/pcr/m/n/9 legend("topright", rownames(VADeaths), fill = gray.colors(nrow
(VADeaths)))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3946--3946
 []\T1/pcr/m/n/9 legend("bottomright", paste("sin(", 1:7, "pi * x)"), col = 1:7
, lty = 1:7,[] 
Underfull \vbox (badness 10000) has occurred while \output is active [945]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3961--3961
 []\T1/pcr/m/n/9 legend(.4,1, "sin(c x)", pch = 21, pt.bg = "white", lty = 1, c
ol = "blue")[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3969--3969
 []\T1/pcr/m/n/9 legend("topleft",     "(x,y)", pch=1, title= "topleft, inset =
 .05", inset = .05)[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3971--3971
 []\T1/pcr/m/n/9 legend("topright",    "(x,y)", pch=1, title= "topright, inset 
= .02",inset = .02)[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3979--3979
 []   \T1/pcr/m/n/9 plot(1, type = "n", axes = FALSE, ann = FALSE); title(paste
("text.font =",i))[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3989--3989
 []\T1/pcr/m/n/9 legend("bottomleft", c("This legend", "has", "optimally sized"
, "columns."),[] 
[946]
Underfull \hbox (badness 10000) in paragraph at lines 4051--4055
[][][]\T1/pcr/m/n/10 lines.formula[][][] []\T1/ptm/m/n/10 for the for-mula meth
od; [][][]\T1/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , par-tic-u-larly for []\
T1/pcr/m/n/10 type %in%
[947] [948]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 4163--4163
 []        \T1/pcr/m/n/10 log = "", ..., add = FALSE, verbose = getOption("verb
ose"))[] 
[949] [950]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 4317--4317
 []\T1/pcr/m/n/9 nd <- length(dv <- seq(as.Date("1959-02-21"), by = "weeks", le
ngth.out = 100))[] 
[951]
Underfull \hbox (badness 3930) in paragraph at lines 4396--4398
[]\T1/ptm/m/n/10 The mag-ni-fi-ca-tion to be used for axis an-no-ta-tion, as a 
mul-ti-ple of
[952] [953] [954] [955] [956]
Underfull \hbox (badness 1286) in paragraph at lines 4707--4710
[]\T1/ptm/m/n/10 which draws the ti-tle. You may want to spec-ify []\T1/pcr/m/n
/10 oma []\T1/ptm/m/n/10 when chang-ing
Underfull \hbox (badness 3229) in paragraph at lines 4715--4720
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[957] [958]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4811--4811
 []\T1/pcr/m/n/9 pairs(USJudgeRatings, lower.panel = panel.smooth, upper.panel 
= panel.cor,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4816--4816
 []      \T1/pcr/m/n/9 main = "Lengths and Widths in [log]", line.main=1.5, oma
=c(2,2,3,2))[] 
[959]
Underfull \hbox (badness 1264) in paragraph at lines 5007--5020
\T1/ptm/m/n/10 func-tions such as [][][]\T1/pcr/m/n/10 plot.default[][][][]\T1/
ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.window[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lines[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 abline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 axis[][][][]\T1/ptm/m/n/10 ,
[960] [961] [962] [963]
Underfull \hbox (badness 10000) in paragraph at lines 5273--5276
[964 </builddir/build/BUILD/R-rc/library/graphics/help/figures//mai.pdf>]
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[965 </builddir/build/BUILD/R-rc/library/graphics/help/figures//oma.pdf>]
[966] [967]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5580--5580
 []\T1/pcr/m/n/9 c(prof.pilots = 16, lawyers = 11, farmers = 10, salesmen = 9, 
physicians = 9,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5581--5581
 []  \T1/pcr/m/n/9 mechanics = 6, policemen = 6, managers = 6, engineers = 5, t
eachers = 4,[] 
Underfull \vbox (badness 10000) has occurred while \output is active [968]
[969] [970] [971] [972] [973]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 5945--5945
 []\T1/pcr/m/n/9 pie(c(Sky = 78, "Sunny side of pyramid" = 17, "Shady side of p
yramid" = 5),[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 5946--5946
 []    \T1/pcr/m/n/9 init.angle = 315, col = c("deepskyblue", "yellow", "yellow
3"), border = FALSE)[] 
[974]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6005 \aliasA{plot}{plot.default}{plot}
                                         [975] [976] [977] [978] [979]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6337--6337
 []\T1/pcr/m/n/9 plot(weight ~ group, data = PlantGrowth)           # numeric v
ector ~ factor[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6343--6343
 []\T1/pcr/m/n/9 plot(PlantGrowth$group, axes = FALSE, main = "no axes")  # ext
remely silly[] 
[980] [981]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 6467--6467
 []               \T1/pcr/m/n/10 main = paste("Histogram of", paste(x$xname, co
llapse = "\n")),[] 
[982] [983] [984] [985]
Underfull \hbox (badness 10000) in paragraph at lines 6772--6774
[]\T1/ptm/m/n/10 background (fill) color for the open plot sym-bols 21:25: see
[986] [987]
Underfull \hbox (badness 1028) in paragraph at lines 6866--6868
[]\T1/ptm/m/n/10 character (or sym-bol) ex-pan-sion: a nu-mer-i-cal vec-tor. Th
is works as a mul-ti-ple of
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[][] 
[988 </builddir/build/BUILD/R-rc/library/graphics/help/figures//pch.pdf>]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 7003--7003
 []\T1/pcr/m/n/9 plot(x, sin(x), type = "o", pch = 21, bg = par("bg"), col = "b
lue", cex = .6,[] 
[989]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 7034--7034
 []    \T1/pcr/m/n/9 plot(rx, ry, type = "n", axes  =  FALSE, xlab = "", ylab =
 "", main = main)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [990]
[991]
Underfull \hbox (badness 10000) in paragraph at lines 7156--7158
[]\T1/ptm/m/n/10 The code im-ple-ment-ing poly-gon shad-ing was do-nated by Kev
in Buhr
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 []  \T1/pcr/m/n/9 polygon(x, y, xpd = xpd, col = "orange", lty = 2, lwd = 2, b
order = "red")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7189--7189
 []\T1/pcr/m/n/9 yy <- c(c(0, cumsum(stats::rnorm(n))), rev(c(0, cumsum(stats::
rnorm(n)))))[] 
[992]
Underfull \hbox (badness 2600) in paragraph at lines 7246--7248
[]\T1/ptm/m/n/10 character value spec-i-fy-ing the path fill mode: ei-ther []\T
1/pcr/m/n/10 "winding" []\T1/ptm/m/n/10 or
[993] [994] [995] [996]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7478--7478
 []\T1/pcr/m/n/9 rect(100+i, 300+i, 150+i, 380+i, col = rainbow(11, start = 0.7
, end = 0.1))[] 
[997] [998] [999] [1000] [1001] [1002]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7865--7865
 []\T1/pcr/m/n/9 Lab.palette <- colorRampPalette(c("blue", "orange", "red"), sp
ace = "Lab")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7869--7869
 []\T1/pcr/m/n/9 ## label the 20 very lowest-density points,the "outliers" (wit
h obs.number):[] 
[1003]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7881--7881
 []\T1/pcr/m/n/9 pairs(y, panel = function(...) smoothScatter(..., nrpoints = 0
, add = TRUE),[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 7908--7908
 []          \T1/pcr/m/n/10 xlim = NULL, ylim = c(0, 1), axes = TRUE, weights =
 NULL, ...)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 7917--7917
 []          \T1/pcr/m/n/10 subset = NULL, weights = NULL, drop.unused.levels =
 FALSE)[] 
[1004] [1005] [1006] [1007] [1008]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 8234--8234
 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi
us  =  FALSE,[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 8237--8237
 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi
us  =  FALSE,[] 
[1009]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 8241--8241
 []      \T1/pcr/m/n/9 draw.segments = TRUE, col.segments = 0, col.stars = 1:10
, key.loc =  0:1,[] 
[1010] [1011]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 8412--8412
 []\T1/pcr/m/n/10 strwidth(s, units = "user", cex = NULL, font = NULL, vfont = 
NULL, ...) 
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 []\T1/pcr/m/n/10 strheight(s, units = "user", cex = NULL, font = NULL, vfont =
 NULL, ...)[] 
[1012] [1013]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 8517--8517
 []\T1/pcr/m/n/10 sunflowerplot(formula, data = NULL, xlab = NULL, ylab = NULL,
 ...,[] 
[1014]
Underfull \hbox (badness 1112) in paragraph at lines 8576--8580
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 number[i] == 1[]\T1/ptm/m/n/10 , a (sligh
tly en-larged) usual plot-ting sym-bol ([]\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 ) 
is drawn. For
[1015]
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 []\T1/pcr/m/n/9 sunflowerplot(iris[, 3:4], cex = .2, cex.fact = 1, size = .035
, seg.lwd = .8)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 8651--8651
 []\T1/pcr/m/n/9 sunflowerplot(rnorm(100), rnorm(100), number = rpois(n = 100, 
lambda = 2),[] 
[1016] [1017]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 8788--8788
 []\T1/pcr/m/n/9 text(x, y, apply(format(round(z3, digits = 2)), 1, paste, coll
apse = ","),[] 
[1018] [1019] [1020]
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 []     \T1/pcr/m/n/9 "Le fran�ais, c\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 est fa�ile: 
R�gles, Libert�, Egalit�, Fraternit�...")[] 
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/pcr/m
/n/10 par(c("font.sub",
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[]\T1/ptm/m/n/10 The po-si-tions of []\T1/pcr/m/n/10 xlab[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sub []\T1/ptm/m/n/10 a
re []\T1/pcr/m/n/10 line []\T1/ptm/m/n/10 (de-fault for []\T1/pcr/m/n/10 xlab [
]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 be-ing
[1021]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni
ts}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9083 \HeaderA{units}{Graphical Units}{units}
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n with the same identifier (name{Rfn.units.1}) has been already used, duplicate
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                   \relax 
l.9083 \HeaderA{units}{Graphical Units}{units}
                                               [1022]
Underfull \hbox (badness 1205) in paragraph at lines 9148--9150
[]\T1/ptm/m/n/10 vectors con-tain-ing the co-or-di-nates of the ver-tices of th
e poly-gon. See
[1023] [1024]
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 []\T1/pcr/m/n/9 arrows(res$x[nr-3], res$y[nr-3], res$x[nr], res$y[nr], code = 
2, length = 0.1)[] 
[1025]) (./grid-pkg.tex [1026]
Chapter 6.
[1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036]
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[]\T1/ptm/m/n/10 Modification of the view-port (should all be valid ar-gu-ments
 to the
[1037] [1038] [1039] [1040] [1041] [1042]
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 []                            \T1/pcr/m/n/9 width=unit(1, "inches"), height=un
it(1, "inches")))[] 
[1043] [1044] [1045]
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 []               \T1/pcr/m/n/9 vpList(vpStack(viewport(x=0.1, y=0.1, width=0.5
, height=0.5,[] 
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 []                                       \T1/pcr/m/n/9 just=c("left", "bottom"
), name="B"),[] 
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 []                              \T1/pcr/m/n/9 viewport(x=0.1, y=0.1, width=0.5
, height=0.5,[] 
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 []                                       \T1/pcr/m/n/9 just=c("left", "bottom"
), name="C"),[] 
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 []                              \T1/pcr/m/n/9 viewport(x=0.1, y=0.1, width=0.5
, height=0.5,[] 
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 []                                       \T1/pcr/m/n/9 just=c("left", "bottom"
), name="D")),[] 
[1046] [1047] [1048] [1049]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a cir-cle grob (a graph-i-cal ob-ject 
de-scrib-ing a cir-cle), but only
[1050] [1051] [1052] [1053] [1054] [1055] [1056]
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 []  \T1/pcr/m/n/9 do.call("grid.curve", c(list(x1=.25, y1=.25, x2=.75, y2=.75)
, list(...)))[] 
[1057] [1058] [1059]
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 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.25, y=.75, gp=gpar(fill="bla
ck"), name="r1")[] 
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 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.5, y=.5, gp=gpar(fill="grey"
), name="r2")[] 
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 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.75, y=.25, gp=gpar(fill="whi
te"), name="r3")[] 
[1060]
Underfull \hbox (badness 2961) in paragraph at lines 2142--2147
[]\T1/ptm/m/n/10 The meth-ods for grob and gTree call the generic hook func-tio
ns []\T1/pcr/m/n/10 preDrawDetails[]\T1/ptm/m/n/10 ,
[1061]
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[]\T1/ptm/m/n/10 Both func-tions call []\T1/pcr/m/n/10 editDetails []\T1/ptm/m/
n/10 to al-low a grob to per-form cus-tom ac-tions and
[1062] [1063] [1064]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a frame grob (a graph-i-cal ob-ject de
-scrib-ing a frame), but only
[1065] [1066] [1067]
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 []\T1/pcr/m/n/10 getGrob(gTree, gPath, strict = FALSE, grep = FALSE, global = 
FALSE)[] 
[1068]
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[]\T1/ptm/m/n/10 The jus-ti-fi-ca-tion of the glyphs rel-a-tive to the ([]\T1/p
cr/m/n/10 x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) lo-ca-tion. 
Can be
[1069]
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 []\T1/pcr/m/n/10 grid.grabExpr(expr, warn = 2, wrap = wrap.grobs, wrap.grobs =
 FALSE,[] 
[1070] [1071]
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 []                          \T1/pcr/m/n/9 children=gList(grob(name="child", vp
="vp1::vp2")),[] 
[1072]
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 []           \T1/pcr/m/n/10 default.units = "npc", gp=gpar(col = "grey"), vp =
 NULL)[] 
[1073] [1074]
Underfull \hbox (badness 10000) in paragraph at lines 3102--3104
[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
[1075]
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[]\T1/ptm/m/n/10 Another pos-si-ble use of []\T1/pcr/m/n/10 grid.group() []\T1/
ptm/m/n/10 is to spec-ify both []\T1/pcr/m/n/10 src []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 dst []\T1/ptm/m/n/10 and com-bine
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[]\T1/ptm/m/n/10 is only drawn where it is NOT over-lapped by []\T1/pcr/m/n/10 
src[]\T1/ptm/m/n/10 . The fol-low-ing (ex-tended) Porter-
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[]\T1/pcr/m/n/10 "multiply"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "screen"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "overlay"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "darke
n"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lighten"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "color.dodge"[]\T1/ptm/m/n/10 ,
[1076]
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 []  \T1/pcr/m/n/9 mask <- as.mask(rectGrob(gp=gpar(col=NA, fill="grey50")), ty
pe="luminance")[] 
[1077]
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 []  \T1/pcr/m/n/9 pushViewport(viewport(layout=grid.layout(1, 1, widths=unit(1
, "inches"),[] 
[1078] [1079] [1080] [1081] [1082]
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 []                                       \T1/pcr/m/n/9 children=vpList(viewpor
t(name="vp2"))))[] 
[1083] [1084]
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 []\T1/pcr/m/n/9 pushViewport(viewport(x=0, y=0, width=0.25, height=0.25, just=
c("left", "bottom")))[] 
Underfull \hbox (badness 2799) in paragraph at lines 3755--3761
[]\T1/ptm/m/n/10 There are two hooks called []\T1/pcr/m/n/10 "before.grid.newpa
ge" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "grid.newpage" []\T1/ptm/m/n/10 (see
[1085] [1086]
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 []          \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border =
 NULL,[] 
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 []          \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border =
 NULL,[] 
[1087] [1088] [1089]
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 []                \T1/pcr/m/n/9 "Nested rectangles, outer clockwise, inner ant
i-clockwise")[] 
[1090]
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 []                \T1/pcr/m/n/9 "Overlapping rectangles, one clockwise, other 
anti-clockwise")[] 
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 []\T1/pcr/m/n/9 # Not specifying pathId will treat all points as part of the s
ame path, thus[] 
[1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101]
[1102]
Underfull \hbox (badness 1067) in paragraph at lines 4840--4843
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1103] [1104] [1105] [1106]
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 []                            \T1/pcr/m/n/9 width=unit(1, "inches"), height=un
it(1, "inches")))[] 
[1107] [1108]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1109]
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 []\T1/pcr/m/n/9 grid.text(quote(frac(e^{-x^2/2}, sqrt(2*pi))), x=x, y=y, rot=s
tats::runif(20, -45,45),[] 
[1110] [1111] [1112] [1113] [1114] [1115]
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 gridCoords []\T1/ptm/m/n/10 a nu-meric ve
c-tor. For []\T1/pcr/m/n/10 gridGrobCoords []\T1/ptm/m/n/10 a list
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\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 "GridCoords" []\T1/ptm/m/n/10 ob-jects. For 
[]\T1/pcr/m/n/10 gridGTreeCoords []\T1/ptm/m/n/10 a list of ei-ther
[1116]
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[]\T1/ptm/m/n/10 Either a []\T1/pcr/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) or a
[1117] [1118] [1119]
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 grid.legend()[]\T1/ptm/m/n/10 : all the a
r-gu-ments above are passed to
[1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130]
[1131] [1132] [1133] [1134] [1135] [1136]
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 []\T1/pcr/m/n/9 unitType(min(unit(1, "in"), unit(1, "npc") + unit(1, "mm")), r
ecurse=TRUE)[] 
[1137] [1138]
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 []\T1/pcr/m/n/10 viewportTransform(group, shear=groupShear(), flip=groupFlip()
, device=TRUE) 
[1139]
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[]\T1/ptm/m/n/10 This func-tion can be used to gen-er-ate a view-port path for 
use in []\T1/pcr/m/n/10 downViewport []\T1/ptm/m/n/10 or
[1140]
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[][][]\T1/pcr/m/n/10 viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 push
Viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 popViewport[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 seekViewport[][][][]\T1/ptm/m/n/10 ,
[1141] [1142] [1143]
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[1145] [1146]
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 []\T1/pcr/m/n/9 invisible(lapply(trace, function(t) grid.lines(t$x, t$y, gp=gp
ar(col="red"))))[] 
[1147]) (./methods-pkg.tex [1148]
Chapter 7.
[1149] [1150]
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[]\T1/ptm/m/n/10 func-tion. See that doc-u-men-ta-tion also for de-tails of how
 co-erce meth-ods work. Use
[1151] [1152] [1153]
Underfull \hbox (badness 1348) in paragraph at lines 392--395
[][][]\T1/pcr/m/n/10 GroupGenericFunctions[][][] []\T1/ptm/m/n/10 for other in-
for-ma-tion about group generic func-tions; [][]Meth-
[1154] [1155]
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 []\T1/pcr/m/n/9 ## vector.  The next method will always be the default, usuall
y a primitive.[] 
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 []\T1/pcr/m/n/9 ## For arithmetic and one rnum with anything, callNextMethod w
ith no arguments[] 
[1156]
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 []\T1/pcr/m/n/9 ## Simple examples to illustrate callNextMethod with and witho
ut arguments[] 
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 []\T1/pcr/m/n/9 ## call f() with 2 arguments: callNextMethod passes both to th
e default method[] 
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 []\T1/pcr/m/n/9 ## call f() with 1 argument:  the default "B0" is not passed b
y callNextMethod[] 
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 []\T1/pcr/m/n/9 ## uses the class of the *argument* to consistently select the
 "B0" method[] 
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 []\T1/pcr/m/n/9 ## Although the argument here is numeric, it\TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 s still the "B0" method that\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s called[
] 
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[1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169]
[1170] [1171] [1172]
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i), sum(1:10, 1+1i))) # the "N
umber" method[] 
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i, TRUE), c(1:10, 1+1i, TRUE))
) # the default[] 
[1173] [1174]
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[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/pcr/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
[1175] [1176] [1177]
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[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/pcr/m/n/10 where =
[1178] [1179]
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[]\T1/ptm/m/n/10 To see the ac-tual ta-ble (an [][][]\T1/pcr/m/n/10 environment
[][][][]\T1/ptm/m/n/10 ) used for meth-ods dis-patch, call
[1180] [1181] [1182]
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[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/pcr/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 Object of class []\T1/pcr/m/n/10 "optionalMethod" []\T1/ptm/m/
n/10 (a union of classes []\T1/pcr/m/n/10 "function" []\T1/ptm/m/n/10 and
[1183]
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 []\T1/pcr/m/n/10 removeMethods(f, where = topenv(parent.frame()), all = missin
g(where))[] 
[1184] [1185] [1186]
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 []\T1/pcr/m/n/9 ## get the function "myFun" -- throw an error if 0 or > 1 vers
ions visible:[] 
[1187] [1188] [1189] [1190] [1191] [1192] [1193]
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[]\T1/ptm/m/n/10 Function []\T1/pcr/m/n/10 implicitGeneric() []\T1/ptm/m/n/10 r
e-turns the im-plicit generic ver-sion,
Underfull \hbox (badness 6268) in paragraph at lines 3402--3407
[]\T1/pcr/m/n/10 setGenericImplicit() []\T1/ptm/m/n/10 turns a generic im-plici
t, []\T1/pcr/m/n/10 prohibitGeneric() []\T1/ptm/m/n/10 pre-vents
[1194] [1195]
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[]\T1/ptm/m/n/10 For a class (or class def-i-ni-tion, see [][][]\T1/pcr/m/n/10 
getClass[][][] []\T1/ptm/m/n/10 and the de-scrip-tion of class
[1196]
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[]
[1197] [1198]
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[] \T1/pcr/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude =
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[]\T1/pcr/m/n/10 setMethod("plot", c("Pos", "missing"), function(x, y, ...) {
[1199]
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[]\T1/pcr/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
,
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[]\T1/ptm/m/n/10 A call to [][][]\T1/pcr/m/n/10 selectSuperClasses[][][](cl) []
\T1/ptm/m/n/10 re-turns a list of su-per-classes, sim-i-larly to
[1200] [1201] [1202] [1203] [1204] [1205]
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 []\T1/pcr/m/n/10 makeClassRepresentation(name, slots=list(), superClasses=char
acter(), 
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 []                        \T1/pcr/m/n/10 prototype=NULL, package, validity, ac
cess,[] 
[1206]
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 []\T1/pcr/m/n/10 method.skeleton(generic, signature, file, external = FALSE, w
here) 
[1207] [1208] [1209]
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[]\T1/ptm/m/n/10 For ad-di-tional in-for-ma-tion see doc-u-men-ta-tion for the 
im-por-tant steps: ([][][]\T1/pcr/m/n/10 setMethod[][][]()[]\T1/ptm/m/n/10 ,
[1210] [1211] [1212]
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[]\T1/ptm/m/n/10 In prin-ci-ple, a generic func-tion could be any func-tion tha
t eval-u-ates a call to
[1213] [1214] [1215] [1216]
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 []\T1/pcr/m/n/9 f3 <- function(x)UseMethod("f3") # an S3 generic to illustrate
 inheritance[] 
[1217]
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 []\T1/pcr/m/n/9 stopifnot(identical(abs(y), abs(x))) # (version 2.9.0 or earli
er fails here)[] 
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 []\T1/pcr/m/n/9 ## The S3 method for classA and the closest inherited S3 metho
d for classB[] 
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[1219]
Underfull \hbox (badness 10000) in paragraph at lines 5363--5364
[]\T1/pcr/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...)
[1220] [1221]
Underfull \hbox (badness 3803) in paragraph at lines 5520--5522
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1222] [1223] [1224]
Underfull \hbox (badness 1087) in paragraph at lines 5752--5757
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1225] [1226] [1227] [1228] [1229] [1230]
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[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 $initialize() []\T1/p
tm/m/n/10 is equiv-a-lent to in-vok-ing the method
[1231] [1232]
Underfull \hbox (badness 1248) in paragraph at lines 6351--6355
[]\T1/ptm/m/n/10 Typically, a spe-cial-ized []\T1/pcr/m/n/10 $initialize() []\T
1/ptm/m/n/10 method car-ries out its own com-pu-ta-tions,
Underfull \hbox (badness 1960) in paragraph at lines 6351--6355
\T1/ptm/m/n/10 then in-vokes []\T1/pcr/m/n/10 $initFields() []\T1/ptm/m/n/10 to
 per-form stan-dard ini-tial-iza-tion, as shown in the
[1233]
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[]\T1/ptm/m/n/10 This method is equiv-a-lent to call-ing the gen-er-a-tor func-
tion re-turned by
[1234] [1235]
Underfull \hbox (badness 2875) in paragraph at lines 6655--6664
[]\T1/ptm/m/n/10 Reference classes can have va-lid-ity meth-ods in the same sen
se as any S4 class (see
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[][][]\T1/pcr/m/n/10 setValidity[][][][]\T1/ptm/m/n/10 ). Such meth-ods are of-
ten a good idea; they will be called by call-ing
[1236]
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[1238] [1239]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6981 \aliasA{S4}{S3Part}{S4}
                               [1240]
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 []\T1/pcr/m/n/10 ## Create a new object from the class or use the replacement 
version of as().[] 
[1241] [1242]
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 []\T1/pcr/m/n/9 fit <- lm(sepal ~ Petal.Length + Petal.Width + Species, data =
 datasets::iris)[] 
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 []\T1/pcr/m/n/9 myReg <- setClass("myReg", slots = c(title = "character"), con
tains = "mlm")[] 
[1243]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Com
plex}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7239 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7240 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7242 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7243 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1244]
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[]\T1/pcr/m/n/10 "abs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sign"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "sqrt"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ceiling"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "floor"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trunc"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cummax"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2012) in paragraph at lines 7317--7329
[]\T1/pcr/m/n/10 "acosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "asin"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "asinh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "atan"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "atanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "exp"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expm1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "c
os"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3209) in paragraph at lines 7317--7329
[]\T1/pcr/m/n/10 "cosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cospi"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "sin"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sinh"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "sinpi"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tan"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanp
i"[]\T1/ptm/m/n/10 ,
[1245] [1246]
Underfull \hbox (badness 1694) in paragraph at lines 7480--7482
[]\T1/ptm/m/n/10 name of the class or (more ef-fi-ciently) the class def-i-ni-t
ion ob-ject (see
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[]\T1/ptm/m/n/10 The typ-i-cal user level func-tion is []\T1/pcr/m/n/10 selectS
uperClasses() []\T1/ptm/m/n/10 which calls
[1247]
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 []\T1/pcr/m/n/9 selectSuperClasses("C", dropVirtual=TRUE, directOnly=FALSE)# d
itto w/o "Root"[] 
[1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258]
[1259] [1260]
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 []\T1/pcr/m/n/10 setGroupGeneric(name, def= , group=list(), valueClass=charact
er(), 
[1261]
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 []      \T1/pcr/m/n/10 by = character(), where = topenv(parent.frame()), class
Def =,[] 
[1262] [1263] [1264] [1265]
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 []\T1/pcr/m/n/9 ## "trackMultiCurve", by making the y, smooth slots into 1-col
umn matrices[] 
[1266] [1267] [1268]
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 []  \T1/pcr/m/n/9 setLoadAction(function(ns) assign("myCount", 0, envir = ns),
 "setCount")[] 
[1269] [1270] [1271]
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 []\T1/pcr/m/n/9 ## Using a short form for the signature, which matches like fo
rmal arguments[] 
[1272] [1273] [1274] [1275]
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 []\T1/pcr/m/n/9 ## Define a new generic function to compute the residual degre
es of freedom[] 
[1276]
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
[1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286]
Underfull \hbox (badness 10000) in paragraph at lines 10564--10566
[]\T1/ptm/m/n/10 Object of the orig-i-nal class; e.g., []\T1/pcr/m/n/10 "functi
on" []\T1/ptm/m/n/10 for class
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
Underfull \hbox (badness 1681) in paragraph at lines 10572--10576
[]\T1/pcr/m/n/10 "functionWithTrace" []\T1/ptm/m/n/10 ex-tends []\T1/pcr/m/n/10
 "function"[]\T1/ptm/m/n/10 . Each of the spe-cific classes ex-tends
[1287] [1288] [1289]) (./parallel-pkg.tex [1290]
Chapter 8.
Underfull \hbox (badness 2418) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/p
cr/m/n/10 "L\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
[1291]
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[]\T1/ptm/m/n/10 a vec-tor for []\T1/pcr/m/n/10 clusterApply []\T1/ptm/m/n/10 a
nd []\T1/pcr/m/n/10 clusterApplyLB[]\T1/ptm/m/n/10 , a ma-trix for
[1292] [1293]
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[]\T1/ptm/m/n/10 Two ex-cep-tions: []\T1/pcr/m/n/10 parLapply []\T1/ptm/m/n/10 
has ar-gu-ment []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 not []\T1/pcr/m/n/10 x []\T1
/ptm/m/n/10 for con-sis-tency with [][][]\T1/pcr/m/n/10 lapply[][][][]\T1/ptm/m
/n/10 , and
[1294]
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1295] [1296]
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[]\T1/ptm/m/n/10 Character vec-tor of ad-di-tional ar-gu-ments for []\T1/pcr/m/
n/10 Rscript []\T1/ptm/m/n/10 such as
[1297] [1298] [1299] [1300] [1301]
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[]\T1/pcr/m/n/10 mcfork []\T1/ptm/m/n/10 re-turns an ob-ject of the class []\T1
/pcr/m/n/10 "childProcess" []\T1/ptm/m/n/10 to the mas-ter and of class
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[]\T1/pcr/m/n/10 "masterProcess" []\T1/ptm/m/n/10 to the child: both the classe
s in-herit from class []\T1/pcr/m/n/10 "process"[]\T1/ptm/m/n/10 . If
[1302]
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 []         \T1/pcr/m/n/10 mc.cleanup = TRUE, mc.allow.recursive = TRUE, affini
ty.list = NULL)[] 
[1303] [1304] [1305]
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 []\T1/pcr/m/n/9 mclapply(list(A, A, A), first, mc.preschedule = FALSE, affinit
y.list = affL)[] 
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 []\T1/pcr/m/n/9 # To optimize the overall execution time elements of X are sch
eduled to suitable CPUs[] 
[1306] [1307]
Underfull \hbox (badness 5388) in paragraph at lines 1174--1179
[]\T1/pcr/m/n/10 mcparallel []\T1/ptm/m/n/10 re-turns an ob-ject of the class [
]\T1/pcr/m/n/10 "parallelJob" []\T1/ptm/m/n/10 which in-her-its from
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[]\T1/ptm/m/n/10 The be-haviour with []\T1/pcr/m/n/10 mc.set.seed = TRUE []\T1/
ptm/m/n/10 is dif-fer-ent only if
[1308]
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 []\T1/pcr/m/n/9 mccollect(p, wait = FALSE, 10) # will retrieve the result (sin
ce it\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s fast)[] 
[1309]
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 []                 \T1/pcr/m/n/9 as.integer(runif(N, 1, 12)), as.integer(runif
(N, 1, 28)))[] 
[1310]
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 []\T1/pcr/m/n/9 system.time(c <- unlist(mclapply(dates, as.POSIXct,  format = 
"%Y-%m-%d")))[] 
Underfull \hbox (badness 1577) in paragraph at lines 1394--1397
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/pcr/m/n/10 
.Random.seed []\T1/ptm/m/n/10 when the
[1311]
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 nextRNGStream []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 nextRNGSubStream[]\T1/ptm/m/n/10 , a value which can be as-signed to
[1312] [1313]) (./splines-pkg.tex [1314]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/pcr/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 499--499
 []\T1/pcr/m/n/9 ispl <- polySpline(interpSpline( weight ~ height,  women, bSpl
ine = TRUE))[] 
[1323]
Underfull \hbox (badness 1043) in paragraph at lines 600--602
[]\T1/ptm/m/n/10 An in-te-ger be-tween 0 and []\T1/pcr/m/n/10 splineOrder(objec
t) - 1 []\T1/ptm/m/n/10 spec-i-fy-ing the
[1324] [1325]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 715--715
 []\T1/pcr/m/n/9 Matrix::drop0(zapsmall(6*splineDesign(knots = 1:40, x = 4:37, 
sparse = TRUE)))[] 
[1326] [1327] [1328]) (./stats-pkg.tex
Chapter 10.
[1329]
Underfull \hbox (badness 1077) in paragraph at lines 71--74
[]\T1/pcr/m/n/10 .MFclass() []\T1/ptm/m/n/10 re-turns a char-ac-ter string, one
 of []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ordered"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "factor"[]\T1/ptm/m/n/10 ,
Overfull \hbox (69.18036pt too wide) in paragraph at lines 91--91
 []\T1/pcr/m/n/9 (xl <- .getXlevels(terms(mf), mf)) # a list with one entry " $
 Species" with 3 levels:[] 
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 []  \T1/pcr/m/n/9 identical(.getXlevels(terms(mc), mc), xl[0]) # a empty named
 list, as no factors[] 
[1330] [1331] [1332] [1333] [1334]
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 []\T1/pcr/m/n/9 add1(glm.D93, scope = ~outcome*treatment, test = "Rao") ## Pea
rson Chi-square[] 
[1335]
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 []\T1/pcr/m/n/10 addmargins(A, margin = seq_along(dim(A)), FUN = sum, quiet = 
FALSE) 
[1336] [1337] [1338] [1339] [1340] [1341]
Underfull \hbox (badness 1024) in paragraph at lines 887--889
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/pcr/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
[1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1626--1626
 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
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 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
[1353] [1354]
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 []                 \T1/pcr/m/n/9 approx(xn, yn, xout=xout, method=M, rule=R, n
a.rm=na.)$y),[] 
[1355]
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 []\T1/pcr/m/n/9 (amy <- approx(x, y, xout = x)$y) # warning, can be avoided by
 specifying \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ties=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[
] 
[1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366]
[1367] [1368] [1369]
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 []\T1/pcr/m/n/10 ARMAacf(ar = numeric(), ma = numeric(), lag.max = r, pacf = F
ALSE) 
[1370] [1371] [1372] [1373]
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 []\T1/pcr/m/n/9 lines(ave(breaks, wool, tension, FUN = median), type = "s", co
l = "green")[] 
[1374] [1375] [1376]
Underfull \hbox (badness 10000) in paragraph at lines 3265--3267
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Bartlett test of homo
geneity of
[1377]
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 []\T1/pcr/m/n/10 pbeta(q, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
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 []\T1/pcr/m/n/10 qbeta(p, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
[1378] [1379] [1380] [1381]
Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3644.
[1382]
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 []\T1/pcr/m/n/9 plot (k, dbinom(k, n, pi/10, log = TRUE), type = "l", ylab = "
log density",[] 
[1383] [1384] [1385] [1386]
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 []\T1/pcr/m/n/10 Box.test(x, lag = 1, type = c("Box-Pierce", "Ljung-Box"), fit
df = 0) 
[1387] [1388] [1389] [1390] [1391]
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 []\T1/pcr/m/n/10 pcauchy(q, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
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 []\T1/pcr/m/n/10 qcauchy(p, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
[1392] [1393] [1394] [1395]
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 []\T1/pcr/m/n/9 chisq.test(x, p = p)            #               maybe doubtful
, but is ok![] 
[1396] [1397]
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 []  \T1/pcr/m/n/9 plot(pp, sort(pchisq(rr <- rchisq(n, df = df, ncp = L), df =
 df, ncp = L)),[] 
[1398] [1399]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1400] [1401] [1402] [1403] [1404]
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 []\T1/pcr/m/n/9 constrOptim(c(-1.2,0.9), fr, grr, ui = rbind(c(-1,0), c(0,-1))
, ci = c(-1,-1))[] 
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 []\T1/pcr/m/n/9 constrOptim(c(.5,0), fr, grr, ui = rbind(c(-1,0), c(1,-1)), ci
 = c(-0.9,0.1))[] 
[1405] [1406] [1407] [1408]
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 []\T1/pcr/m/n/9 ## using sparse contrasts: % useful, once model.matrix() works
 with these :[] 
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 []\T1/pcr/m/n/10 convolve(x, y, conj = TRUE, type = c("circular", "open", "fil
ter")) 
[1409] [1410] [1411]
Underfull \hbox (badness 1436) in paragraph at lines 5630--5635
[]\T1/ptm/m/n/10 an op-tional char-ac-ter string giv-ing a method for com-put-i
ng co-vari-ances
Underfull \hbox (badness 1377) in paragraph at lines 5630--5635
\T1/ptm/m/n/10 in the pres-ence of miss-ing val-ues. This must be (an ab-bre-vi
-a-tion of)
Underfull \hbox (badness 1448) in paragraph at lines 5630--5635
\T1/ptm/m/n/10 one of the strings []\T1/pcr/m/n/10 "everything"[]\T1/ptm/m/n/10
 , []\T1/pcr/m/n/10 "all.obs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "complete.obs"
[]\T1/ptm/m/n/10 ,
[1412] [1413]
Underfull \vbox (badness 10000) has occurred while \output is active [1414]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5833--5833
 []         \T1/pcr/m/n/10 exact = NULL, conf.level = 0.95, continuity = FALSE,
 ...)[] 
[1415] [1416]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 6000--6000
 []\T1/pcr/m/n/10 cov.wt(x, wt = rep(1/nrow(x), nrow(x)), cor = FALSE, center =
 TRUE, 
[1417] [1418] [1419]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 6185--6185
 []\T1/pcr/m/n/10 decompose(x, type = c("additive", "multiplicative"), filter =
 NULL) 
[1420] [1421]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 6293--6293
 []\T1/pcr/m/n/10 reformulate(termlabels, response = NULL, intercept = TRUE, en
v = parent.frame())[] 
[1422] [1423] [1424] [1425]
Underfull \hbox (badness 5954) in paragraph at lines 6556--6558
[]\T1/ptm/m/n/10 logical in-di-cat-ing if a box around the plot should be drawn
, see
[1426]
Underfull \hbox (badness 2503) in paragraph at lines 6638--6641
[]\T1/ptm/m/n/10 Objects of class []\T1/pcr/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/pcr/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing 
method
Underfull \hbox (badness 5563) in paragraph at lines 6642--6644
[]\T1/pcr/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
Underfull \hbox (badness 1655) in paragraph at lines 6645--6650
\T1/ptm/m/n/10 has []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y [
]\T1/ptm/m/n/10 (and op-tional fur-ther ar-gu-ments) as branches. Note that be-
fore \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.1.2,
[1427]
Underfull \hbox (badness 7238) in paragraph at lines 6681--6684
[][][]\T1/pcr/m/n/10 dendrapply[][][] []\T1/ptm/m/n/10 for ap-ply-ing a func-ti
on to \T1/ptm/m/it/10 each \T1/ptm/m/n/10 node. [][][]\T1/pcr/m/n/10 order.dend
rogram[][][] []\T1/ptm/m/n/10 and
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6693--6693
 []\T1/pcr/m/n/9 str(dend1, max.level = 2, last.str =  "\TS1/pcr/m/n/9 '\T1/pcr
/m/n/9 ") # only the first two sub-levels[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6716--6716
 []\T1/pcr/m/n/9 plot(dend2$lower[[3]], nodePar = list(col = 4), horiz = TRUE, 
type = "tr")[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6731--6731
 []\T1/pcr/m/n/9 ## merge() all parts back (using default \TS1/pcr/m/n/9 '\T1/p
cr/m/n/9 height\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 instead of original one):[] 
[1428]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6746--6746
 []\T1/pcr/m/n/9 plot(d3, nodePar= nP, edgePar = list(col = "gray", lwd = 2), h
oriz = TRUE)[] 
[1429] [1430] [1431]
Underfull \vbox (badness 10000) has occurred while \output is active [1432]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7014--7014
 []                     \T1/pcr/m/n/9 function(k) density(kernel = k, give.Rker
n = TRUE))))[] 
[1433] [1434]
Underfull \vbox (badness 10000) has occurred while \output is active [1435]
[1436] [1437] [1438]
Underfull \hbox (badness 10000) in paragraph at lines 7414--7418
[]\T1/pcr/m/n/10 "maximum"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "manhattan"[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 "canberra"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "bi
nary" []\T1/ptm/m/n/10 or
[1439]
Underfull \hbox (badness 6493) in paragraph at lines 7517--7520
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/pcr/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
[1440] [1441]
Underfull \hbox (badness 10000) in paragraph at lines 7654--7657
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/pcr/m/n/10 ht
tps : / / CRAN . R-[]project . org / view =
[1442] [1443] [1444] [1445] [1446] [1447]
Underfull \hbox (badness 10000) in paragraph at lines 8066--8071
[]\T1/ptm/m/n/10 Each row of the re-sult-ing ma-trix con-sists of se-quences []
\T1/pcr/m/n/10 x[t][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 x[t-1][]\T1/ptm/m/n/10 ,
 ...,
[1448] [1449] [1450] [1451] [1452] [1453]
Underfull \hbox (badness 1210) in paragraph at lines 8421--8423
[]\T1/ptm/m/n/10 Components of []\T1/pcr/m/n/10 control []\T1/ptm/m/n/10 can al
so be sup-plied as named ar-gu-ments to
[1454] [1455] [1456] [1457] [1458] [1459]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 8887--8887
 []\T1/pcr/m/n/9 glm.qD93 <- glm(counts ~ outcome + treatment, d.AD, family = q
uasipoisson())[] 
[1460]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 8932--8932
 []\T1/pcr/m/n/9 ## Not run: glm(y ~ x, family = quasi(variance = "mu^3", link 
= "log")) # fails[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 8935--8935
 []\T1/pcr/m/n/9 glm(y ~ x, family = quasi(variance = "mu(1-mu)", link = "logit
"), start = c(0,1))[] 
[1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 9515--9515
 []           \T1/pcr/m/n/9 dimnames = list(income = c("< 15k", "15-25k", "25-4
0k", "> 40k"),[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 9516--9516
 []                     \T1/pcr/m/n/9 satisfaction = c("VeryD", "LittleD", "Mod
erateS", "VeryS")))[] 
[1469] [1470] [1471]
Underfull \hbox (badness 7291) in paragraph at lines 9695--9697
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Fligner-Killeen test 
of homogeneity of
[1472] [1473] [1474] [1475] [1476] [1477] [1478]
Underfull \hbox (badness 6944) in paragraph at lines 10187--10193
[][][]\T1/pcr/m/n/10 ftable.formula[][][] []\T1/ptm/m/n/10 for the for-mula in-
ter-face (which al-lows a []\T1/pcr/m/n/10 data = . []\T1/ptm/m/n/10 ar-gu-ment
);
[1479] [1480] [1481]
Underfull \hbox (badness 3758) in paragraph at lines 10401--10404
[]\T1/ptm/m/n/10 See also [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or
[1482] [1483] [1484] [1485]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 10645--10645
 []    \T1/pcr/m/n/10 x = FALSE, y = TRUE, singular.ok = TRUE, contrasts = NULL
, ...)[] 
Underfull \hbox (badness 4518) in paragraph at lines 10671--10676
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1486]
Underfull \hbox (badness 4132) in paragraph at lines 10710--10714
[]\T1/ptm/m/n/10 the method to be used in fit-ting the model. The de-fault meth
od
Underfull \hbox (badness 1112) in paragraph at lines 10764--10770
[]\T1/ptm/m/n/10 A spec-i-fi-ca-tion of the form []\T1/pcr/m/n/10 first:second 
[]\T1/ptm/m/n/10 in-di-cates the set of terms ob-tained by tak-
[1487]
Underfull \hbox (badness 10000) in paragraph at lines 10815--10818
[]\T1/ptm/m/n/10 The generic ac-ces-sor func-tions [][][]\T1/pcr/m/n/10 coeffic
ients[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 effects[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 fitted.values []\T1/ptm/m/n/10 and
[1488] [1489] [1490]
Underfull \hbox (badness 2142) in paragraph at lines 11032--11035
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1491]
Underfull \hbox (badness 1708) in paragraph at lines 11113--11117
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1492]
Underfull \hbox (badness 10000) in paragraph at lines 11155--11161
[][][]\T1/pcr/m/n/10 glm[][][] []\T1/ptm/m/n/10 for com-put-ing []\T1/pcr/m/n/1
0 glm.obj[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 anova.glm[][][][]\T1/ptm/m/n/1
0 ; the cor-re-spond-ing \T1/ptm/m/it/10 generic \T1/ptm/m/n/10 func-tions,
Underfull \hbox (badness 1418) in paragraph at lines 11193--11198
[]\T1/pcr/m/n/10 "average" []\T1/ptm/m/n/10 (= UP-GMA), []\T1/pcr/m/n/10 "mcqui
tty" []\T1/ptm/m/n/10 (= WPGMA), []\T1/pcr/m/n/10 "median" []\T1/ptm/m/n/10 (=
[1493] [1494]
Underfull \hbox (badness 2635) in paragraph at lines 11326--11329
\T1/ptm/m/n/10 There are [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/n/10 , [][
][]\T1/pcr/m/n/10 plot[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 identify []\
T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 identify.hclust[][][][]\T1/ptm/m/n/10 )
 meth-ods and the
[1495] [1496] [1497]
Underfull \hbox (badness 1694) in paragraph at lines 11509--11512
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1498]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11607--11607
 []\T1/pcr/m/n/9 heatmap(Ca, Rowv = FALSE, symm = TRUE, RowSideColors = cc, Col
SideColors = cc,[] 
[1499]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 11640--11640
 []            \T1/pcr/m/n/10 optim.start = c(alpha = 0.3, beta = 0.1, gamma = 
0.1),[] 
Underfull \hbox (badness 10000) in paragraph at lines 11653--11657
[]\T1/ptm/m/n/10 Character string to se-lect an []\T1/pcr/m/n/10 "additive" []\
T1/ptm/m/n/10 (the de-fault) or
[1500] [1501] [1502] [1503] [1504]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 11975--11975
 []\T1/pcr/m/n/9 identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4)
, DEV.FUN = nD)[] 
[1505]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11990 \aliasA{hat}{influence.measures}{hat}
                                             
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12050--12050
 []\T1/pcr/m/n/10 cooks.distance(model, infl = lm.influence(model, do.coef = FA
LSE),[] 
[1506]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12062--12062
 []\T1/pcr/m/n/10 hatvalues(model, infl = lm.influence(model, do.coef = FALSE),
 ...)[] 
Underfull \hbox (badness 1062) in paragraph at lines 12115--12120
[]\T1/ptm/m/n/10 The op-tional []\T1/pcr/m/n/10 infl[]\T1/ptm/m/n/10 , []\T1/pc
r/m/n/10 res []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sd []\T1/ptm/m/n/10 ar-gu-me
nts are there to en-cour-age the use of these di-
Underfull \hbox (badness 1052) in paragraph at lines 12132--12134
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists 
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1507] [1508] [1509] [1510]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12387--12387
 []                 \T1/pcr/m/n/10 type = c("l", "p", "b", "o", "c"), legend = 
TRUE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12388--12388
 []                 \T1/pcr/m/n/10 trace.label = deparse1(substitute(trace.fact
or)),[] 
[1511] [1512] [1513] [1514] [1515] [1516]
Underfull \hbox (badness 10000) in paragraph at lines 12734--12736
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/pcr/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 SSinit =
Underfull \hbox (badness 4739) in paragraph at lines 12757--12759
[]\T1/ptm/m/n/10 the es-ti-mate at time $\OML/cmm/m/it/10 t \OMS/cmsy/m/n/10 ^^
@ \OT1/cmr/m/n/10 1$ \T1/ptm/m/n/10 of the state un-cer-tainty ma-trix $\OML/cm
m/m/it/10 Q$ \T1/ptm/m/n/10 (not up-dated by
[1517] [1518] [1519] [1520] [1521]
Underfull \hbox (badness 3417) in paragraph at lines 13064--13066
[]\T1/ptm/m/n/10 an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of class []\T1/pcr/
m/n/10 "kmeans"[]\T1/ptm/m/n/10 , typ-i-cally the re-sult []\T1/pcr/m/n/10 ob [
]\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 ob <-
Underfull \hbox (badness 2894) in paragraph at lines 13070--13074
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
Underfull \hbox (badness 1038) in paragraph at lines 13070--13074
\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 "Hartigan-Wong"[]\T1/ptm/m/n/10 ): if pos-i-ti
ve (or true), trac-ing in-for-ma-tion on the
[1522] [1523] [1524] [1525] [1526] [1527]
Underfull \hbox (badness 1496) in paragraph at lines 13493--13499
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1528] [1529] [1530] [1531]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13742--13742
 []\T1/pcr/m/n/9 lag.plot(sqrt(sunspots), set.lags = c(1:4, 9:12), pch = ".", c
ol = "gold")[] 
[1532]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13843--13843
 []\T1/pcr/m/n/9 dimnames(cAS) <- list(paste("it =", format(1:10)), c("intercep
t", "slope"))[] 
[1533]
Underfull \hbox (badness 4518) in paragraph at lines 13891--13896
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1534] [1535] [1536]
Underfull \hbox (badness 10000) in paragraph at lines 14092--14096
[]\T1/ptm/m/n/10 More []\T1/pcr/m/n/10 lm() []\T1/ptm/m/n/10 ex-am-ples are ava
il-able e.g., in [][][]\T1/pcr/m/n/10 anscombe[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 attitude[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 freeny[][][]
[]\T1/ptm/m/n/10 ,
[1537] [1538] [1539] [1540] [1541]
Underfull \hbox (badness 1163) in paragraph at lines 14431--14439
\T1/ptm/m/n/10 els, [][][]\T1/pcr/m/n/10 influence[][][] []\T1/ptm/m/n/10 (etc 
on that page) for re-gres-sion di-ag-nos-tics, [][][]\T1/pcr/m/n/10 weighted.re
siduals[][][][]\T1/ptm/m/n/10 ,
[1542] [1543]
Underfull \hbox (badness 4518) in paragraph at lines 14551--14556
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1544] [1545]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 14739--14739
 []\T1/pcr/m/n/10 plogis(q, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 14740--14740
 []\T1/pcr/m/n/10 qlogis(p, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
[1546] [1547] [1548] [1549] [1550]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15083--15083
 []\T1/pcr/m/n/10 plnorm(q, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15084--15084
 []\T1/pcr/m/n/10 qlnorm(p, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
[1551] [1552]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 15177--15177
 []\T1/pcr/m/n/10 lowess(x, y = NULL, f = 2/3, iter = 3, delta = 0.01 * diff(ra
nge(x))) 
[1553] [1554] [1555] [1556] [1557] [1558]
Underfull \hbox (badness 2726) in paragraph at lines 15586--15589
[]\T1/ptm/m/n/10 character; one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cauchit"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "cloglog"[]\T1/ptm/m/n/10 ,
[1559]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 15680--15680
 []\T1/pcr/m/n/9 stopifnot(all.equal(pfm, pf2)) ## was off (rel.diff. 0.0766) i
n R <= 3.5.0[] 
[1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 16309--16309
 []\T1/pcr/m/n/9 a <- model.frame(cbind(ncases,ncontrols) ~ agegp + tobgp + alc
gp, data = esoph) 
[1570] [1571]
Underfull \hbox (badness 1490) in paragraph at lines 16456--16461
\T1/ptm/m/n/10 those spec-i-fied in []\T1/pcr/m/n/10 ... []\T1/ptm/m/n/10 which
 are re-cy-cled to the num-ber of data frame rows. Un-like
[1572]
Underfull \hbox (badness 1648) in paragraph at lines 16524--16526
[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
[1573]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 16609--16609
 []\T1/pcr/m/n/9 model.matrix(~ a + b, dd, contrasts.arg = list(a = "contr.sum"
, b = contr.poly))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 16610--16610
 []\T1/pcr/m/n/9 m.orth <- model.matrix(~a+b, dd, contrasts.arg = list(a = "con
tr.helmert"))[] 
[1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 17167--17167
 []\T1/pcr/m/n/9 stopifnot(all(na.omit(1:3) == 1:3))  # does not affect objects
 with no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] 
[1583] [1584] [1585]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17399--17399
 []\T1/pcr/m/n/9 persp(x, size, dnb <- outer(x, size, function(x,s) dnbinom(x, 
s, prob = 0.4)),[] 
[1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595]
Underfull \vbox (badness 10000) has occurred while \output is active [1596]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 18121--18121
 []\T1/pcr/m/n/9 ## adjusting the convergence test by adding \TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 scaleOffset\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 to its denominator RSS:[]
 
Underfull \vbox (badness 10000) has occurred while \output is active [1597]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 18139--18139
 []\T1/pcr/m/n/9 ## Here, requiring close convergence, must use more accurate n
umerical differentiation,[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 18140--18140
 []\T1/pcr/m/n/9 ## as this typically gives Error: "step factor .. reduced belo
w \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 minFactor\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 .."[] 
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 []\T1/pcr/m/n/9 ## central differencing works here typically (PR#18165: not co
nverging on *some*):[] 
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 []\T1/pcr/m/n/9 ctr2 <- nls.control(nDcentral=TRUE, tol = 8e-8, # <- even smal
ler than above[] 
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 []        \T1/pcr/m/n/9 (grepl("^aarch64.*linux", R.version$platform) && grepl
("^NixOS", osVersion)[] 
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 []              \T1/pcr/m/n/9 start = list(a = rep(b[2], 21), b = rep(b[3], 21
), th = b[1]))[] 
[1598] [1599] [1600]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 18356--18356
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData(expression(log(conc)), expression(densi
ty), DNase.2)[] 
[1601]
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 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
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 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
[1602] [1603] [1604] [1605]
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 []             \T1/pcr/m/n/10 eps = .Machine$double.eps ^ (1/if(central) 3 els
e 2), central = FALSE)[] 
[1606] [1607] [1608] [1609] [1610]
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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
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[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
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\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 control$trace []\T1/ptm/m/n/10 is pos-i-tive
. De-faults to ev-ery 10 it-er-a-tions for []\T1/pcr/m/n/10 "BFGS" []\T1/ptm/m/
n/10 and
[1611]
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[]\T1/ptm/m/n/10 indicates an er-ror from the []\T1/pcr/m/n/10 "L-BFGS-B" []\T1
/ptm/m/n/10 method; see com-po-nent
[1612]
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 []      \T1/pcr/m/n/9 lower = rep(2, 25), upper = rep(4, 25)) # par[24] is *no
t* at boundary[] 
[1613]
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 []     \T1/pcr/m/n/9 main = "initial solution of traveling salesman problem", 
axes = FALSE)[] 
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 []\T1/pcr/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 
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 []\T1/pcr/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
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 []\T1/pcr/m/n/10 optimize(f, interval, ..., lower = min(interval), upper = max
(interval), 
[1614]
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 []\T1/pcr/m/n/10 optimise(f, interval, ..., lower = min(interval), upper = max
(interval),[] 
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[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 f []\T1/ptm/m/n/10 is never eva
l-u-ated at two points closer to-gether than $\OML/cmm/m/it/10 ^^O$$\OMS/cmsy/m
/n/10 j\OML/cmm/m/it/10 x[]\OMS/cmsy/m/n/10 j \OT1/cmr/m/n/10 + (\OML/cmm/m/it/
10 tol=\OT1/cmr/m/n/10 3)$\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1082) in paragraph at lines 19285--19296
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 ^^O$ \T1/ptm/m/n/10 is ap-prox-i-mately 
[]\T1/pcr/m/n/10 sqrt([][].Machine[][][]$double.eps) []\T1/ptm/m/n/10 and $\OML
/cmm/m/it/10 x[]$ \T1/ptm/m/n/10 is the fi-nal ab-scissa
[1615]
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 []\T1/pcr/m/n/9 f  <- function(x) ifelse(x > -1, ifelse(x < 4, exp(-1/abs(x - 
1)), 10), 10)[] 
[1616] [1617] [1618]
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 []\T1/pcr/m/n/9 matplot(p, p.adj, ylab="p.adjust(p, meth)", type = "l", asp = 
1, lty = 1:6,[] 
[1619] [1620]
Underfull \hbox (badness 1337) in paragraph at lines 19686--19689
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1621] [1622] [1623] [1624] [1625]
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 []      \T1/pcr/m/n/10 par.fit = list(col = "red", cex = 1.5, pch = 13, lwd = 
1.5),[] 
[1626] [1627]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 20093--20093
 []       \T1/pcr/m/n/10 expression("Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s dist
 vs Leverage* " * h[ii] / (1 - h[ii]))),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 20095--20095
 []              \T1/pcr/m/n/10 panel.smooth(x, y, iter=iter.smooth, ...) else 
points,[] 
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 []     \T1/pcr/m/n/10 ask = prod(par("mfcol")) < length(which) && dev.interact
ive(),[] 
[1628]
Underfull \hbox (badness 10000) in paragraph at lines 20157--20163
\T1/pcr/m/n/10 "bottomleft", legend = "Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s di
stance", lty = cook.lty,
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\T1/pcr/m/n/10 col = cook.col, text.col = cook.col, bty = "n", x.intersp
Underfull \hbox (badness 10000) in paragraph at lines 20165--20171
[]\T1/ptm/m/n/10 the num-ber of ro-bust-ness it-er-a-tions, the ar-gu-ment []\T
1/pcr/m/n/10 iter []\T1/ptm/m/n/10 in
Underfull \hbox (badness 10000) in paragraph at lines 20176--20179
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 1 or 2, to be used in []\T1/pcr/m
/n/10 ylim <-
[1629] [1630] [1631] [1632] [1633]
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 []                    \T1/pcr/m/n/10 main = NULL, ci.col = "blue", ci.lty = 3,
 ...)[] 
Underfull \hbox (badness 1194) in paragraph at lines 20495--20498
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1634]
Underfull \hbox (badness 1107) in paragraph at lines 20553--20555
[]\T1/ptm/m/n/10 numeric vec-tor of ab-scissa val-ues at which to eval-u-ate []
\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . De-faults to
[1635]
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 []\T1/pcr/m/n/9 plot(sfun.2);plot(sfun.2, xval = tt, add = TRUE, col = "orange
") # all colors[] 
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 []\T1/pcr/m/n/9 legend(2.5, 1.9, paste("f =", c(0, 0.2, 1)), col = 1:3, lty = 
1, y.intersp = 1)[] 
[1636] [1637]
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 []\T1/pcr/m/n/9 title("plot(ts(..), axes=FALSE, ann=FALSE, frame.plot=TRUE, ma
r..., oma...)")[] 
[1638] [1639]
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 []    \T1/pcr/m/n/9 ppois(10*(15:25), lambda = 100, lower.tail = FALSE)  # no 
cancellation[] 
[1640]
Underfull \hbox (badness 7740) in paragraph at lines 20901--20903
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 "Comparison of
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 []\T1/pcr/m/n/10 poly(x, ..., degree = 1, coefs = NULL, raw = FALSE, simple = 
FALSE) 
[1641]
Underfull \hbox (badness 10000) in paragraph at lines 21005--21007
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 poly(*, simple=TRUE)[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 polym(*, coefs=<non-NULL>)[]\T1/ptm/m/n/10 , and
[1642]
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 [] \T1/pcr/m/n/9 zm <- zapsmall(polym (    1:4, c(1, 4:6),  degree = 3)) # or 
just poly():[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 21047--21047
 []\T1/pcr/m/n/9 ## poly(<matrix>, df) --- used to fail till July 14 (vive la F
rance!), 2017:[] 
[1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653]
[1654] [1655]
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 []          \T1/pcr/m/n/9 all.equal(pz3$sdev, pZ$sdev, tolerance = 1e-15)) # e
xactly equal typically[] 
[1656]
Underfull \hbox (badness 6859) in paragraph at lines 21969--21976
[][][]\T1/pcr/m/n/10 predict.glm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
redict.lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.loess[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.nls[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 predict.poly[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 21980--21986
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/pcr/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1657] [1658] [1659] [1660] [1661]
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 []        \T1/pcr/m/n/10 rankdeficient = c("warnif", "simple", "non-estim", "N
A", "NAwarn"),[] 
Underfull \hbox (badness 10000) in paragraph at lines 22294--22297
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string
 spec-i-fy-ing what should hap-pen in the
Underfull \hbox (badness 10000) in paragraph at lines 22294--22297
\T1/ptm/m/n/10 case of a rank de-fi-cient model, i.e., when []\T1/pcr/m/n/10 ob
ject$rank <
[1662]
Underfull \hbox (badness 5832) in paragraph at lines 22299--22304
\T1/ptm/m/n/10 cases, i.e., vec-tors not in the same pre-dic-tor sub-space as t
he
Underfull \hbox (badness 8151) in paragraph at lines 22299--22304
\T1/ptm/m/n/10 orig-i-nal data (with tol-er-ance []\T1/pcr/m/n/10 tol[]\T1/ptm/
m/n/10 ). In that case, the non-
Underfull \hbox (badness 1184) in paragraph at lines 22299--22304
\T1/ptm/m/n/10 estimable in-dices are also re-turned as at-tribute []\T1/pcr/m/
n/10 "non-estim" []\T1/ptm/m/n/10 (see
[1663] [1664] [1665] [1666] [1667] [1668] [1669]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 22767--22767
 []         \T1/pcr/m/n/10 subset = rep_len(TRUE, nrow(as.matrix(x))), fix_sign
 = TRUE, ...)[] 
[1670] [1671] [1672] [1673]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 23051--23051
 []             \T1/pcr/m/n/10 has.Pvalue = nc >= 4L && length(cn <- colnames(x
)) &&[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 23052--23052
 []                          \T1/pcr/m/n/10 substr(cn[nc], 1L, 3L) %in% c("Pr("
, "p-v"),[] 
[1674] [1675] [1676] [1677] [1678]
Underfull \hbox (badness 1337) in paragraph at lines 23378--23384
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1679] [1680] [1681] [1682] [1683]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 23690--23690
 []\T1/pcr/m/n/9 with(d, qqplot(Female, Male, pch = 19, xlim = c(-31, 31), ylim
 = c(-31, 31),[] 
[1684] [1685] [1686] [1687]
Underfull \hbox (badness 10000) in paragraph at lines 24002--24004
[]\T1/ptm/m/n/10 Wicklin, R. (2017) Sam-ple quan-tiles: A com-par-i-son of 9 de
f-i-ni-tions;
Underfull \hbox (badness 10000) in paragraph at lines 24002--24004
\T1/ptm/m/n/10 SAS Blog. [][]$\T1/pcr/m/n/10 https : / / blogs . sas . com / co
ntent / iml / 2017 / 05 / 24 /
[1688]
Underfull \hbox (badness 10000) in paragraph at lines 24009--24010
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _
[1689]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 24120--24120
 []       \T1/pcr/m/n/10 method = c("non.compact", "row.compact", "col.compact"
, "compact"),[] 
[1690]
Underfull \hbox (badness 1028) in paragraph at lines 24178--24181
[]\T1/ptm/m/n/10 further ar-gu-ments to be passed to or from meth-ods; for []\T
1/pcr/m/n/10 write() []\T1/ptm/m/n/10 and
[1691] [1692]
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[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1693]
Underfull \hbox (badness 7099) in paragraph at lines 24348--24350
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 reorder[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
[1694]
Underfull \hbox (badness 7099) in paragraph at lines 24412--24414
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 relevel[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
Overfull \hbox (31.3804pt too wide) in paragraph at lines 24447--24447
 []\T1/pcr/m/n/9 bymedianR <- with(InsectSprays, reorder(spray, count, median, 
decreasing=TRUE))[] 
[1695] [1696]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 24523--24523
 []\T1/pcr/m/n/9 plot(reorder(dd, 10:1, agglo.FUN = mean), main = "reorder(dd, 
10:1, mean)")[] 
[1697] [1698]
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 []\T1/pcr/m/n/10 #         varying = ___,  # list / matrix / vector (use with 
care)[] 
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 []\T1/pcr/m/n/10 #         v.names = ___,  # vector of variable names in long 
format[] 
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 []\T1/pcr/m/n/10 #         timevar, times, # name / values of constructed time
 variable[] 
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 []\T1/pcr/m/n/10 #         idvar, ids)     # name / values of constructed id v
ariable[] 
[1699] [1700]
Underfull \hbox (badness 10000) in paragraph at lines 24803--24808
[][][]\T1/pcr/m/n/10 stack[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 aperm[]
[][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 relist[][][] []\T1/ptm/m/n/10 for r
e-shap-ing the re-sult of [][][]\T1/pcr/m/n/10 unlist[][][][]\T1/ptm/m/n/10 . [
][][]\T1/pcr/m/n/10 xtabs[][][] []\T1/ptm/m/n/10 and
Underfull \hbox (badness 2495) in paragraph at lines 24803--24808
[][][]\T1/pcr/m/n/10 as.data.frame.table[][][] []\T1/ptm/m/n/10 for cre-at-ing 
con-tin-gency ta-bles and con-vert-ing them back to
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 []\T1/pcr/m/n/9 ## long to wide (direction = "wide") requires idvar and timeva
r at a minimum[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 24815--24815
 []\T1/pcr/m/n/9 reshape(Indometh, direction = "wide", idvar = "Subject", timev
ar = "time")[] 
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 []\T1/pcr/m/n/9 reshape(df, timevar = "visit", idvar = "id", direction = "wide
", v.names = "x")[] 
[1701] [1702]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 24938--24938
 []       \T1/pcr/m/n/10 na.action = c("+Big_alternate", "-Big_alternate", "na.
omit", "fail"),[] 
Underfull \hbox (badness 1033) in paragraph at lines 24981--24987
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1703]
Underfull \hbox (badness 10000) in paragraph at lines 25002--25005
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/pcr/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/pcr/m/n/10 y[j] =
[1704]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 25084--25084
 []\T1/pcr/m/n/9 plot(myNHT, type = "b", ylim = c(48, 60), main = "Running Medi
ans Example")[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 25113--25113
 []\T1/pcr/m/n/9 ## An example with initial NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s -
 used to fail badly (notably for "Turlach"):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 25125--25125
 []\T1/pcr/m/n/9 matplot(y = cbind(x15, rT15), type = "b", ylim = c(1,9), pch=1
:5, xlab = NA,[] 
[1705] [1706] [1707] [1708] [1709] [1710]
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[1712]
Underfull \hbox (badness 6268) in paragraph at lines 25584--25589
[][][]\T1/pcr/m/n/10 SSasympOrig[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 S
Sbiexp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfol[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 SSfpl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSgo
mpertz[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSlogis[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 SSmicmen[][][][]\T1/ptm/m/n/10 ,
[1713] [1714] [1715]
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[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to
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[]\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 PP
Underfull \hbox (badness 10000) in paragraph at lines 25810--25814
\T1/pcr/m/n/10 <- sum(!is.na([][]coef[][][](object))) []\T1/ptm/m/n/10 -- where
 in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was
[1716]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 25852--25852
 []\T1/pcr/m/n/9 sigma(lm1) # ~= 7.165  = "Residual standard error"  printed fr
om summary(lm1)[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 25859--25859
 []\T1/pcr/m/n/9 stopifnot(all.equal(sigma(fm.DN1), summary(fm.DN1)$sigma, tole
rance=1e-15))[] 
[1717] [1718] [1719]
Underfull \hbox (badness 2495) in paragraph at lines 26042--26051
[]\T1/ptm/m/n/10 For an in-verse gaus-sian GLM the model as-sumed is $\OML/cmm/
m/it/10 IG\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 ^^V[]; ^^Uw[]\OT1/cmr/m/n/10 )$ \T1
/ptm/m/n/10 (see [][]$\T1/pcr/m/n/10 https : / / en .
[1720] [1721]
Underfull \hbox (badness 2197) in paragraph at lines 26184--26187
[]\T1/pcr/m/n/10 psmirnov []\T1/ptm/m/n/10 gives the dis-tri-bu-tion func-tion,
 []\T1/pcr/m/n/10 qsmirnov []\T1/ptm/m/n/10 gives the quan-tile func-tion, and
Overfull \hbox (24.78088pt too wide) in paragraph at lines 26204--26204
 []       \T1/pcr/m/n/10 twiceit = FALSE, endrule = c("Tukey", "copy"), do.ends
 = FALSE)[] 
Underfull \hbox (badness 1412) in paragraph at lines 26211--26213
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing the kind of smoother re-qui
red; de-faults to
[1722]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 26298--26298
 []\T1/pcr/m/n/9 matlines(cbind(smooth(x, "3R"), smooth(x, "S"), smooth(x, "3RS
S"), smooth(x)))[] 
[1723]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 26323--26323
 []\T1/pcr/m/n/10 smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, lambda 
= NULL, cv = FALSE, 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 26326--26326
 []              \T1/pcr/m/n/10 control.spar = list(), tol = 1e-6 * IQR(x), kee
p.stuff = FALSE)[] 
[1724] [1725] [1726]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 26561--26561
 []    \T1/pcr/m/n/10 nx <- length(x) - sum(duplicated( round((x - mean(x)) / t
ol) ))[] 
Underfull \hbox (badness 2547) in paragraph at lines 26565--26571
[]\T1/ptm/m/n/10 The de-fault []\T1/pcr/m/n/10 all.knots = FALSE []\T1/ptm/m/n/
10 and []\T1/pcr/m/n/10 nknots = .nknots.smspl[]\T1/ptm/m/n/10 , en-tails us-in
g only
[1727]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 26612--26612
 []\T1/pcr/m/n/9 plot(dist ~ speed, data = cars, main = "data(cars)  &  smoothi
ng splines")[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 26633--26633
 []\T1/pcr/m/n/9 with(cars.spl$fit, min + range * knot[-c(1:3, nk+1 +1:3)]) # =
= unique(cars$speed)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1728]
[1729] [1730]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 26825--26825
 []\T1/pcr/m/n/10 spec.ar(x, n.freq, order = NULL, plot = TRUE, na.action = na.
fail, 
[1731] [1732] [1733] [1734] [1735] [1736]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 27205--27205
 []          \T1/pcr/m/n/10 method = c("fmm", "periodic", "natural", "monoH.FC"
, "hyman"),[] 
[1737] [1738]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 27386--27386
 []\T1/pcr/m/n/9 set.seed(8); x <- sort(round(rnorm(30), 1)); y <- round(sin(pi
 * x) + rnorm(30)/10, 3)[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 27392--27392
 []\T1/pcr/m/n/9 plot(x, y, main = "spline(x,y, ties=list(\"ordered\", mean))  
for when x has ties")[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1739]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 27401--27401
 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "monoH.FC")(x), add = TRUE, c
ol = 3, n = 1001)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 27402--27402
 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "hyman")   (x), add = TRUE, c
ol = 4, n = 1001)[] 
[1740]
Underfull \hbox (badness 2922) in paragraph at lines 27471--27476
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (9.78043pt too wide) in paragraph at lines 27508--27508
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5.2), xlim
 = c(-.3, 5),[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 27511--27511
 []                    \T1/pcr/m/n/9 {f[phi](x) == phi[1] + (phi[2]-phi[1])*~e^
{-e^{phi[3]}*~x}}))[] 
[1741]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 27520--27520
 []         \T1/pcr/m/n/9 c(0  ,  1   ), 1, length = 0.08, angle = 25); text(0.
5, 1, quote(1))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 27521--27521
 []  \T1/pcr/m/n/9 y0 <- 1 + 4*exp(-3/4) ; t.5 <- log(2) / exp(-3/4) ; AR2 <- 3
 # (Asym + R0)/2[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 27525--27525
 []  \T1/pcr/m/n/9 axis(2, at = c(1,AR2,5), labels= expression(phi[2], frac(phi
[1]+phi[2],2), phi[1]),[] 
Underfull \hbox (badness 3240) in paragraph at lines 27579--27582
[][][]\T1/pcr/m/n/10 nls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 selfStart
[][][][]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 example(SSasympOff) []\T1/ptm/m/n/10 
gives graph show-ing the []\T1/pcr/m/n/10 SSasympOff
[1742]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 27600--27600
 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOff(xx, Asym = 5, lrc = log(
0.4), c0 = 3/4)) )[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27603--27603
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(-.5,6), xlim
 = c(-1, 8),[] 
[1743]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27686--27686
 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOrig(xx, Asym = 5, lrc = log
(log(2)))) )[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27690--27690
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5), xlim =
 c(-1/4, 5),[] 
Overfull \hbox (58.38037pt too wide) in paragraph at lines 27700--27700
 []  \T1/pcr/m/n/9 axis(2, at = 5*c(1/2,1), labels= expression(frac(phi[1],2), 
phi[1]), pos=0, las=1)[] 
[1744]
Overfull \hbox (106.98032pt too wide) in paragraph at lines 27705--27705
 []       \T1/pcr/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
Underfull \hbox (badness 2922) in paragraph at lines 27741--27747
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27763--27763
 []\T1/pcr/m/n/9 print(getInitial(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), dat
a = Indo.1),[] 
[1745]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 27779--27779
 []  \T1/pcr/m/n/9 legend("topright", c("y1+y2", "y1 = 3.5 * exp(-4*x)", "y2 = 
1.5 * exp(-x)"),[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 27793--27793
 []\T1/pcr/m/n/9 ## Fails by default (scaleOffset=0) on most platforms {also af
ter increasing maxiter !}[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 27795--27795
 []        \T1/pcr/m/n/9 nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, trace=TRUE)[] 
Overfull \hbox (128.58029pt too wide) in paragraph at lines 27798--27798
 []\T1/pcr/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[] 
Overfull \hbox (123.1803pt too wide) in paragraph at lines 27800--27800
 []           \T1/pcr/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[] 
[1746] [1747]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 27912--27912
 []\T1/pcr/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input) - exp(-exp(lK
a)*input)) 
[1748]
Underfull \hbox (badness 2922) in paragraph at lines 27974--27979
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1749]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 28012--28012
 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "A", phi[2] == "B", phi[3] == "xm
id", phi[4] == "scal")))[] 
Underfull \hbox (badness 2922) in paragraph at lines 28061--28066
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1750]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28092--28092
 []\T1/pcr/m/n/9 lines(x, do.call(SSgompertz, c(list(x=x), coef(fm1))), col = "
red", lwd=2)[] 
Underfull \hbox (badness 2922) in paragraph at lines 28126--28131
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1751]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 28151--28151
 []\T1/pcr/m/n/9 ## Initial values are in fact the converged one here, "Number 
of iter...: 0" :[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 28155--28155
 []\T1/pcr/m/n/9 fm2 <- update(fm1, control=nls.control(tol = 1e-9, warnOnly=TR
UE), trace = TRUE)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28175--28175
 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "Asym", phi[2] == "xmid", phi[3] 
== "scal")))[] 
[1752]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 28185--28185
 []  \T1/pcr/m/n/9 segments(c(2,2.6,2.6), c(0,  2.5,3.5),   # NB.  SSlogis(x = 
xmid = 2) = 2.5[] 
Underfull \hbox (badness 2922) in paragraph at lines 28220--28225
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28242--28242
 []\T1/pcr/m/n/9 print(getInitial(rate ~ SSmicmen(conc, Vm, K), data = PurTrt),
 digits = 3)[] 
[1753]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 28260--28260
 []       \T1/pcr/m/n/9 ann = FALSE, axes = FALSE, main = "Parameters in the SS
micmen model")[] 
[1754]
Underfull \hbox (badness 6493) in paragraph at lines 28312--28317
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28340--28340
 []\T1/pcr/m/n/9 getInitial(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28343--28343
 []\T1/pcr/m/n/9 fm1 <- nls(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 28346--28346
 []\T1/pcr/m/n/9 plot(weight ~ Time, Chick.6, xlim = c(0, 21), main = "SSweibul
l() fit to Chick.6")[] 
Overfull \hbox (69.18036pt too wide) in paragraph at lines 28349--28349
 []\T1/pcr/m/n/9 As <- coef(fm1)[["Asym"]]; abline(v = 0, h = c(As, As - coef(f
m1)[["Drop"]]), lty = 3)[] 
[1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765]
[1766] [1767] [1768]
Underfull \hbox (badness 3396) in paragraph at lines 29233--29235
[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.glm"[]\T1/ptm/m/
n/10 , usu-ally, a re-sult of a call to
[1769] [1770] [1771]
Underfull \hbox (badness 2237) in paragraph at lines 29412--29414
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1772] [1773]
Underfull \hbox (badness 2591) in paragraph at lines 29576--29578
[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.nls"[]\T1/ptm/m/
n/10 , usu-ally the re-sult of a call to
[1774]
Underfull \hbox (badness 2237) in paragraph at lines 29622--29625
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1775]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 29695--29695
 []\T1/pcr/m/n/10 supsmu(x, y, wt =, span = "cv", periodic = FALSE, bass = 0, t
race = FALSE) 
[1776] [1777]
Underfull \hbox (badness 3407) in paragraph at lines 29804--29808
[]\T1/ptm/m/n/10 character vec-tor, one shorter than (the \T1/ptm/m/it/10 aug-m
ented\T1/ptm/m/n/10 , see []\T1/pcr/m/n/10 corr []\T1/ptm/m/n/10 be-low)
[1778]
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 []\T1/pcr/m/n/9 symnum(ii, cutpoints =  2*(0:4), symbols = c(".", "-", "+", "$
"), show.max = TRUE)[] 
[1779]
Underfull \hbox (badness 1337) in paragraph at lines 29937--29941
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1780] [1781] [1782] [1783]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 30202--30202
 []\T1/pcr/m/n/9 persp(tt, ncp, ptn, zlim = 0:1, r = 2, phi = 20, theta = 200, 
main = t.tit,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 30230--30230
 []         \T1/pcr/m/n/10 use.factor.levels = TRUE, smooth = NULL, ylim = "com
mon",[] 
[1784]
Underfull \hbox (badness 1616) in paragraph at lines 30256--30259
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1785]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 30335--30335
 []\T1/pcr/m/n/9 termplot(model, partial.resid = TRUE, smooth = panel.smooth, s
pan.smth = 1/4)[] 
[1786]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 30413--30413
 []\T1/pcr/m/n/10 terms(x, specials = NULL, abb = NULL, data = NULL, neg.out = 
TRUE,[] 
[1787] [1788]
Underfull \hbox (badness 2205) in paragraph at lines 30508--30513
[]\T1/ptm/m/n/10 If a []\T1/pcr/m/n/10 specials []\T1/ptm/m/n/10 ar-gu-ment was
 given to [][][]\T1/pcr/m/n/10 terms.formula[][][] []\T1/ptm/m/n/10 there is a
[1789] [1790]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 30649--30649
 []\T1/pcr/m/n/10 toeplitz2(x, nrow = length(x) +1 - ncol, ncol = length(x) +1 
- nrow)[] 
Underfull \hbox (badness 2913) in paragraph at lines 30655--30659
[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 toeplitz(x, *)[]\T1/ptm/m/n/10 : the firs
t col-umn of the Toeplitz ma-trix; for
Overfull \hbox (36.7804pt too wide) in paragraph at lines 30692--30692
 []\T1/pcr/m/n/9 # Matrix of character (could also have logical, raw, complex .
.) {also warning}:[] 
[1791]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 30705--30705
 []   \T1/pcr/m/n/9 colnames(W) <- paste0(",", if(n <= 9) 1:n else c(1:9, lette
rs[seq_len(n-9)]))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 30716--30716
 []\T1/pcr/m/n/9 y.hat <- W. %*% y # y.hat := smoothed(y) ("mass preserving" ->
 longer than y)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 30718--30718
 []\T1/pcr/m/n/9 plot(x,y, type="b", xlim=c(1,m)); curve(f(x), 1,n, col="gray",
 lty=2, add=TRUE)[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 30748--30748
 []   \T1/pcr/m/n/10 class = if(nseries > 1) c("mts", "ts", "matrix", "array") 
else "ts",[] 
[1792] [1793]
Underfull \hbox (badness 1655) in paragraph at lines 30826--30829
[]\T1/pcr/m/n/10 is.mts(x) []\T1/ptm/m/n/10 tests if an ob-ject []\T1/pcr/m/n/1
0 x []\T1/ptm/m/n/10 is a mul-ti-vari-ate time se-ries, i.e., ful-fills []\T1/p
cr/m/n/10 is.ts(x)[]\T1/ptm/m/n/10 ,
[1794] [1795] [1796] [1797] [1798]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 31190--31190
 []\T1/pcr/m/n/10 ptukey(q, nmeans, df, nranges = 1, lower.tail = TRUE, log.p =
 FALSE) 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 31191--31191
 []\T1/pcr/m/n/10 qtukey(p, nmeans, df, nranges = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
[1799] [1800] [1801] [1802] [1803]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 31491--31491
 []        \T1/pcr/m/n/10 extendInt = c("no", "yes", "downX", "upX"), check.con
v = FALSE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 31492--31492
 []        \T1/pcr/m/n/10 tol = .Machine$double.eps^0.25, maxiter = 1000, trace
 = 0)[] 
[1804] [1805]
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 []\T1/pcr/m/n/9 ##--- uniroot() with new interval extension + checking feature
s: --------------[] 
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 []\T1/pcr/m/n/9 ## where as  \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 extendInt="yes"\TS1
/pcr/m/n/9 '  \T1/pcr/m/n/9 simply first enlarges the search interval:[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1806]
[1807] [1808]
Underfull \hbox (badness 1337) in paragraph at lines 31847--31851
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816]
Underfull \hbox (badness 1337) in paragraph at lines 32376--32380
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1817] [1818] [1819]
Overfull \hbox (117.7803pt too wide) in paragraph at lines 32584--32584
 []\T1/pcr/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 32586--32586
 []\T1/pcr/m/n/9 wilcox.test((4:2)/10, (3:1)/10, paired=TRUE, digits.rank = 9) 
# same ties as (4:2, 3:1)[] 
[1820] [1821] [1822]
Overfull \hbox (138.78088pt too wide) in paragraph at lines 32745--32745
 []      \T1/pcr/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
 = getOption("ts.eps"), ...)[] 
[1823]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 32830--32830
 []\T1/pcr/m/n/10 xtabs(formula = ~., data = parent.frame(), subset, sparse = F
ALSE, 
[1824] [1825]
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 []\T1/pcr/m/n/9 ## The Female:Rejected combination has NA \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 Freq\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 (and NA prints \TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 invisibly\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 as "")[] 
[1826]) (./stats4-pkg.tex
Chapter 11.
[1827] [1828] [1829]
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 []    \T1/pcr/m/n/9 -sum(stats::dpois(y, lambda = exp(lymax)/(1+x/exp(lxhalf))
, log = TRUE))[] 
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 []\T1/pcr/m/n/9 ## Boundary case: This works, but fails if limits are set clos
er to 0 and 1[] 
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ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored
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l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1835] [1836] [1837])
(./tcltk-pkg.tex [1838]
Chapter 12.
[1839] [1840] [1841] [1842] [1843]
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 []\T1/pcr/m/n/9 ls(envir = .TkRoot$env, all.names = TRUE) # .Tcl.args put a ca
llback ref in here[] 
[1844] [1845]
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[]\T1/pcr/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
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 []\T1/pcr/m/n/9 eval.txt <- function() eval(str2lang(tclvalue(tkget(txt.w, "0.
0", "end"))))[] 
[1853] [1854] [1855] [1856] [1857]
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[][][]\T1/pcr/m/n/10 select.list[][][] []\T1/ptm/m/n/10 (a text ver-sion ex-cep
t on Win-dows and the ma-cOS GUI), [][][]\T1/pcr/m/n/10 menu[][][] []\T1/ptm/m/
n/10 (whose
[1858]) (./tools-pkg.tex
Chapter 13.
[1859]
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 []\T1/pcr/m/n/9 ## is used for simple print methods in R, and as prototype for
 new methods.[] 
[1860]
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[]\T1/pcr/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
 be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1861]
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 []\T1/pcr/m/n/9 assertCondition(ff(), "error", "warning") # ok (quietly, catch
ing warning)[] 
[1862]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12
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\T1/ptm/m/n/10 types of bib-li-o-graphic en-try sup-ported by [][][]\T1/pcr/m/n
/10 bibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-
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\T1/ptm/m/n/10 tines de-scribed be-low. The for-mer must be named []\T1/pcr/m/n
/10 formatArticle[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 formatBook[]\T1/ptm/m/n/10
 ,
[1863]
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 []\T1/pcr/m/n/10 buildVignette(file, dir = ".", weave = TRUE, latex = TRUE, ta
ngle = TRUE, 
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1864] [1865]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[1866] [1867] [1868] [1869] [1870] [1871] [1872]
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 []\T1/pcr/m/n/10 resaveRdaFiles(paths, compress = c("auto", "gzip", "bzip2", "
xz"),[] 
[1873]
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 []\T1/pcr/m/n/9 bad <- is.na(res$ASCII) | res$ASCII | (res$size > 1e4 & res$co
mpress == "none")[] 
[1874] [1875]
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 []                              \T1/pcr/m/n/10 outputs = FALSE, sources = FALS
E, ...)[] 
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 []\T1/pcr/m/n/10 check_packages_in_dir_details(dir, logs = NULL, drop_ok = TRU
E, ...)[] 
[1876]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-
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\T1/ptm/m/n/10 ing []\T1/pcr/m/n/10 summarize_check_packages_in_dir_results []\
T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 check_packages_in_dir []\T1/ptm/m/n/10 re-turns an ob-ject in-
her-it-ing from class
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[]\T1/pcr/m/n/10 codocClasses []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 codocData [
]\T1/ptm/m/n/10 re-turn ob-jects of class []\T1/pcr/m/n/10 "codocClasses" []\T1
/ptm/m/n/10 and
[1880] [1881]
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[]\T1/pcr/m/n/10 CRAN_package_db() []\T1/ptm/m/n/10 re-turns a data frame with 
char-ac-ter columns con-tain-ing most
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' meta-data for the cu
r-rent pack-ages in the CRAN pack-age repos-i-
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\T1/ptm/m/n/10 tory, in-clud-ing in par-tic-u-lar the De-scrip-tion and Main-ta
iner in-for-ma-tion not pro-vided by
[1882]
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/pcr/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
[1883] [1884]
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 []              \T1/pcr/m/n/10 utils::installed.packages(lib.loc, fields = "En
hances"))[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests",
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\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor,
[1885] [1886] [1887]pdfTeX warning (ext4): destination with the same identifier
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l.1938 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       pdfTeX warning (ext4): destination with 
the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig
nored
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                   \relax 
l.1939 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1888] [1889] [1890]
[1891]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 loadPkgRdMacros []\T1/ptm/m/n/10 func-tio
n first looks for an []\T1/pcr/m/n/10 "RdMacros" []\T1/ptm/m/n/10 en-try in the
 pack-age
[1892]
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[]\T1/ptm/m/n/10 Package main-tain-ers can use these func-tions to em-ploy user
 and site spe-cific com-pi-la-
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\T1/ptm/m/n/10 tion set-tings also for com-pi-la-tions not us-ing \T1/phv/m/n/1
0 R\T1/ptm/m/n/10 's mech-a-nisms (in par-tic-u-lar, cus-tom com-
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\T1/ptm/m/n/10 pi-la-tions in sub-di-rec-to-ries of `\T1/pcr/m/n/10 src\T1/ptm/
m/n/10 '), e.g., by adding con-fig-ure code call-ing \T1/phv/m/n/10 R \T1/ptm/m
/n/10 with
[1893]
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\T1/ptm/m/n/10 This al-lows e.g. the trans-la-tions shipped in \T1/phv/m/n/10 R
 \T1/ptm/m/n/10 3.x.y to be up-dated to those cur-rently in
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[]\T1/pcr/m/n/10 matchConcordance []\T1/ptm/m/n/10 con-verts from out-put lo-ca
-tions to source lo-ca-tions. The
[1894]
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/pcr/m/n/10 as.Rconcordance []\T1/
ptm/m/n/10 searches for strings match-ing the pat-tern of
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[]\T1/pcr/m/n/10 followConcordance []\T1/ptm/m/n/10 is used when a file is tran
s-formed more than once. The first
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\T1/ptm/m/n/10 trans-for-ma-tion records a con-cor-dance in the file which is r
ead as []\T1/pcr/m/n/10 prevConcordance[]\T1/ptm/m/n/10 .
[1895] [1896]
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 []\T1/pcr/m/n/10 package_dependencies(packages = NULL, db = NULL, which = "str
ong", 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests",
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\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor,
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 []\T1/pcr/m/n/9 myPkgs <- c("MASS", "Matrix", "KernSmooth", "class", "cluster"
, "codetools")[] 
[1897]
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 []    \T1/pcr/m/n/10 align = TRUE, character_only = TRUE, include_declarations
 = TRUE)[] 
[1898] [1899] [1900] [1901]
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 [] \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macros", "system.
Rd"),[] 
[1902]
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion 3.2.0, User-d
efined macros may be given in a sep-a-rate file us-ing
[1903] [1904]
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 []\T1/pcr/m/n/10 checkDocFiles   (package, dir, lib.loc = NULL, chkInternal = 
FALSE) 
[1905]
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 []\T1/pcr/m/n/10 checkRdContents (package, dir, lib.loc = NULL, chkInternal = 
FALSE)[] 
[1906] [1907] [1908]
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-
tor of links, as re-turned by
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 []             \T1/pcr/m/n/10 macros = file.path(R.home("share"), "Rd", "macro
s", "system.Rd"))[] 
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[]\T1/ptm/m/n/10 By de-fault, the tags \T1/pcr/m/n/10 \S3method\T1/ptm/m/n/10 ,
 \T1/pcr/m/n/10 \S4method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \command\T1/ptm/m/n/10
 , \T1/pcr/m/n/10 \docType\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \email\T1/ptm/m/n/10 
,
[1914] [1915] [1916]
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[]\T1/ptm/m/n/10 This func-tion starts the in-ter-nal HTTP server, which runs o
n the loop-back in-ter-face
[1917] [1918]
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 []                      \T1/pcr/m/n/10 types = c("examples", "tests", "vignett
es"),[] 
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 []\T1/pcr/m/n/10 testInstalledBasic(scope = c("basic", "devel", "both", "inter
net"))[] 
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1919]
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[]\T1/pcr/m/n/10 testInstalledBasic []\T1/ptm/m/n/10 runs the ba-sic tests, if 
in-stalled. This should be run with
[1920]
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/pcr/m/n/10 texi2dvi []\T1/ptm/m/n/10 5
.0 and later; []\T1/pcr/m/n/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-ti
on
[1921] [1922] [1923] [1924]
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 []  \T1/pcr/m/n/10 "mac.binary", "win.binary"), verbose.level = as.integer(dry
run),[] 
[1925] [1926]
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 []\T1/pcr/m/n/10 update_pkg_po(pkgdir, pkg = NULL, version = NULL, mergeOpts =
 "", copyright, bugs) 
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[]\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/pcr/m/n/10 m
sgmerge []\T1/ptm/m/n/10 in ad-di-tion to
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[]\T1/ptm/m/n/10 optional char-ac-ter strings for the `[]\T1/pcr/m/n/10 Copyrig
ht[]\T1/ptm/m/n/10 ' and
[1927]
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[]\T1/ptm/m/n/10 All ex-ist-ing files in di-rec-tory []\T1/pcr/m/n/10 po []\T1/
ptm/m/n/10 with names `\T1/pcr/m/n/10 R-\T1/ptm/m/sl/10 lang\T1/pcr/m/n/10 .po\
T1/ptm/m/n/10 ' are up-dated from
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/pcr/m/n/10 po
/\T1/ptm/m/sl/10 pkgname\T1/pcr/m/n/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. T
he
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in t
he pack-age are ex-am-ined to cre-ate a file
[1928] [1929] [1930]
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[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 vignetteEngine[][][][]\T1/ptm/m/n/10 
, such as []\T1/pcr/m/n/10 "utils::Sweave" []\T1/ptm/m/n/10 or
[1931]
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 []               \T1/pcr/m/n/10 verbose = FALSE, unpacked = FALSE, subdirs = F
ALSE,[] 
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 []               \T1/pcr/m/n/10 latestOnly = TRUE, addFiles = FALSE, rds_compr
ess = "xz",[] 
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/10 ',
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[]\T1/pcr/m/n/10 "Package"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Version"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Priority"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Depe
nds"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Imports"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 write_PACKAGES []\T1/ptm/m/n/10 scans the named di-rec-tory fo
r R pack-ages, ex-tracts in-for-ma-tion from
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\T1/ptm/m/n/10 each pack-age's `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file
, and writes this in-for-ma-tion into the `\T1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/1
0 ',
[1932]
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[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
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\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 PACKAGES.gz\T1/ptm/m/n/10 ' files. See [][][
]\T1/pcr/m/n/10 update_PACKAGES[][][] []\T1/ptm/m/n/10 for ef-fi-ciently up-dat
-ing ex-ist-ing
[1933] [1934]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5157--5157
 []\T1/pcr/m/n/9 xgettext(tmpPkg, asCall=TRUE )[[1]] # default; shows  \TS1/pcr
/m/n/9 ' \T1/pcr/m/n/9 sqrt(as.complex(x)) \TS1/pcr/m/n/9 '[] 
[1935]) (./utils-pkg.tex [1936]
Chapter 14.
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
[1937] [1938] [1939] [1940]
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 []\T1/pcr/m/n/9 find("cor", numeric = TRUE)                     # numbers with
 these names[] 
[1941] [1942]
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\T1/ptm/m/n/10 are []\T1/pcr/m/n/10 c("vertical", "horizontal", "cascade", "min
imize",
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 of win-dow 
han-dles, by de-fault pro-duced by
[1943]
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 []\T1/pcr/m/n/9 # This default is useful only in SDI mode:  it will tile any F
irefox window[] 
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 []\T1/pcr/m/n/9 .arrangeWindowsDefaults <- list(c("R", "all"), pattern = c("",
 "Firefox"))[] 
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 []         \T1/pcr/m/n/10 prompts = getOption("askYesNo", gettext(c("Yes", "No
", "Cancel"))),[] 
[1944] [1945] [1946]
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 []\T1/pcr/m/n/10 aspell_package_Rd_files(dir, drop = c("\\author", "\\referenc
es"), 
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 []\T1/pcr/m/n/10 aspell_package_R_files(dir, ignore = character(), control = l
ist(),[] 
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 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
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 []\T1/pcr/m/n/10 aspell_package_C_files(dir, ignore = character(), control = l
ist(),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 695--695
 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
[1947]
Underfull \hbox (badness 10000) in paragraph at lines 729--735
[]\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 aspell_package_Rd_files[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 4416) in paragraph at lines 729--735
[]\T1/pcr/m/n/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 a
spell_package_C_files []\T1/ptm/m/n/10 per-form spell check-
[1948] [1949] [1950] [1951]
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 []\T1/pcr/m/n/10 bibentry(bibtype, textVersion = NULL, header = NULL, footer =
 NULL, 
[1952]
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[][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if Bib-TeX co
de should be given ad-di-tion-ally;
Underfull \hbox (badness 5533) in paragraph at lines 1127--1133
\T1/ptm/m/n/10 cur-rently ap-plies only to []\T1/pcr/m/n/10 style = "citation"[
]\T1/ptm/m/n/10 . The de-fault for
Underfull \hbox (badness 4739) in paragraph at lines 1127--1133
\T1/ptm/m/n/10 the []\T1/pcr/m/n/10 print() []\T1/ptm/m/n/10 method de-pends on
 the num-ber of (bib) en-tries and
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\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
Underfull \hbox (badness 10000) in paragraph at lines 1136--1138
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1953] [1954]
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[]\T1/ptm/m/n/10 The DOI ([][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Digital _ Object _
[1955]
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 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1956]
[1957] [1958] [1959] [1960] [1961]
Underfull \hbox (badness 1859) in paragraph at lines 1747--1756
[]\T1/ptm/m/n/10 For ex-am-ple, sup-pose that on a data set which you know to b
e quite large the com-
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\T1/ptm/m/n/10 mand []\T1/pcr/m/n/10 data.frame(x, y, z, monday, tuesday) []\T1
/ptm/m/n/10 never re-turns. Do not re-port that
[1962] [1963]
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 []                                     \T1/pcr/m/n/9 data = infert, family = b
inomial())))[] 
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 []\T1/pcr/m/n/10 changedFiles(before, after, path = before$path, timestamp = b
efore$timestamp,[] 
[1964] [1965]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 2033--2033
 []\T1/pcr/m/n/9 snapshot <- fileSnapshot(dir, timestamp = tempfile("timestamp"
), md5sum=TRUE)[] 
[1966]
Underfull \hbox (badness 2277) in paragraph at lines 2102--2107
[]\T1/pcr/m/n/10 charClass []\T1/ptm/m/n/10 was added in \T1/phv/m/n/10 R \T1/p
tm/m/n/10 4.1.0. A less di-rect way to ex-am-ine char-ac-ter classes
[1967]
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 []\T1/pcr/m/n/9 cl <- c("alnum", "alpha", "blank", "digit", "graph", "punct", 
"upper", "xdigit")[] 
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 []\T1/pcr/m/n/9 X <- as.data.frame(X); row.names(X) <- sQuote(intToUtf8(x, mul
tiple = TRUE))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2144--2144
 []\T1/pcr/m/n/9 ## How many printable characters are there? (Around 280,000 in
 Unicode 13.)[] 
[1968] [1969]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2292--2292
 []\T1/pcr/m/n/10 chooseBioCmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1970]
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 []\T1/pcr/m/n/10 chooseCRANmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1971]
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[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/pcr/m/n/10 citation() []\T1/
ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print
Underfull \hbox (badness 1400) in paragraph at lines 2459--2466
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
[1972] [1973]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2542--2542
 []\T1/pcr/m/n/10 citeNatbib(keys, bib, textual = FALSE, before = NULL, after =
 NULL,[] 
[1974]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2662--2662
 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
[1975]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 2702--2702
 []\T1/pcr/m/n/10 citEntry(entry, textVersion = NULL, header = NULL, footer = N
ULL, ...) 
Underfull \hbox (badness 1082) in paragraph at lines 2731--2735
[][][]\T1/pcr/m/n/10 citation[][][] []\T1/ptm/m/n/10 for more in-for-ma-tion ab
out cit-ing R and R pack-ages and `\T1/pcr/m/n/10 CITATION\T1/ptm/m/n/10 ' file
s;
[1976]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cli
pboard}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2736 ... the Clipboard in MS Windows}{clipboard}
                                                  
Underfull \hbox (badness 1163) in paragraph at lines 2767--2769
[]\T1/ptm/m/n/10 The Win-dows clip-board of-fers data in a num-ber of for-mats:
 see e.g. [][]$\T1/pcr/m/n/10 https : / / docs .
Overfull \vbox (1.12102pt too high) has occurred while \output is active
[1977] [1978]
Underfull \hbox (badness 10000) in paragraph at lines 2860--2862
[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[1979] [1980] [1981]
Underfull \hbox (badness 10000) in paragraph at lines 3078--3080
[]\T1/ptm/m/n/10 character string, in-di-cat-ing which type of pack-ages: see
[1982] [1983] [1984] [1985]
Underfull \hbox (badness 1762) in paragraph at lines 3371--3374
[]\T1/ptm/m/n/10 To just look in the `\T1/pcr/m/n/10 data\T1/ptm/m/n/10 ' di-re
c-tory of the cur-rent work-ing di-rec-tory, set []\T1/pcr/m/n/10 package =
[1986]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3463--3463
 []\T1/pcr/m/n/9 try(data(package = "rpart"), silent = TRUE) # list the data se
ts in the rpart package[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3464--3464
 []\T1/pcr/m/n/9 data(USArrests, "VADeaths")    # load the data sets \TS1/pcr/m
/n/9 '\T1/pcr/m/n/9 USArrests\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and \TS1/pcr/m/n/9 
'\T1/pcr/m/n/9 VADeaths\TS1/pcr/m/n/9 '[] 
[1987]
Underfull \hbox (badness 2452) in paragraph at lines 3538--3541
[]\T1/ptm/m/n/10 The data en-try win-dow re-sponds to X re-sources of class []\
T1/pcr/m/n/10 R_dataentry[]\T1/ptm/m/n/10 . Re-sources
[1988] [1989] [1990] [1991] [1992] [1993]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 3967--3967
 []  \T1/pcr/m/n/9 DLL.version(file.path(R.home(), "library/stats/libs", .Platf
orm$r_arch, "stats.dll"))[] 
[1994]
Underfull \hbox (badness 4779) in paragraph at lines 4046--4051
[]\T1/ptm/m/n/10 Support for method []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10
 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[1995]
Underfull \hbox (badness 1072) in paragraph at lines 4109--4113
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/pcr/m/n/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[1996]
Underfull \hbox (badness 7238) in paragraph at lines 4165--4170
[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 "curl" []\T1/ptm/m/n/10 meth-ods, prox-ies can be set \T1/ptm/m/it/1
0 via \T1/ptm/m/n/10 the en-vi-ron-
Underfull \hbox (badness 1337) in paragraph at lines 4165--4170
\T1/ptm/m/n/10 ment vari-ables []\T1/pcr/m/n/10 http_proxy []\T1/ptm/m/n/10 or 
[]\T1/pcr/m/n/10 ftp_proxy[]\T1/ptm/m/n/10 . See [][]$\T1/pcr/m/n/10 https : / 
/ curl . se / libcurl / c /
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\T1/ptm/m/n/10 string con-tain-ing `[]\T1/pcr/m/n/10 "Schannel"[]\T1/ptm/m/n/10
 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-
[1997] [1998]
Underfull \hbox (badness 4660) in paragraph at lines 4306--4309
\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
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[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 do
wnload.file[][][] []\T1/ptm/m/n/10 and
[1999] [2000] [2001]
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[]\T1/ptm/m/n/10 Data frame columns are co-erced on in-put to \T1/ptm/m/it/10 c
har-ac-ter \T1/ptm/m/n/10 un-less nu-meric (in the sense of
[2002]
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 []        \T1/pcr/m/n/10 character.only = FALSE, give.lines = FALSE, local = F
ALSE,[] 
[2003]
Underfull \hbox (badness 1910) in paragraph at lines 4634--4641
\T1/ptm/m/n/10 is saved, then ini-tial-ized to a spec-i-fied state, the ex-am-p
le is run and
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\T1/ptm/m/n/10 the (saved) state is re-stored. []\T1/pcr/m/n/10 setRNG = TRUE [
]\T1/ptm/m/n/10 sets the same state as
Underfull \hbox (badness 2846) in paragraph at lines 4634--4641
[]\T1/pcr/m/n/10 R CMD [][]check[][][] []\T1/ptm/m/n/10 does for run-ning a pac
k-age's ex-am-ples. This is cur-
Underfull \hbox (badness 3460) in paragraph at lines 4634--4641
\T1/ptm/m/n/10 rently equiv-a-lent to []\T1/pcr/m/n/10 setRNG = {RNGkind("defau
lt", "default",
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[]\T1/ptm/m/n/10 logical (or []\T1/pcr/m/n/10 "default"[]\T1/ptm/m/n/10 ) in-di
-cat-ing if [][][]\T1/pcr/m/n/10 devAskNewPage[][][](ask = TRUE)
[2004] [2005] [2006]
Underfull \hbox (badness 5939) in paragraph at lines 4887--4889
[]\T1/ptm/m/n/10 An en-try in []\T1/pcr/m/n/10 getOption("repos") []\T1/ptm/m/n
/10 named `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' which is not the de-fault
[2007] [2008]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5030--5030
 []\T1/pcr/m/n/9 # Set a breakpoint in both copies of that function, assuming o
ne is in the[] 
[2009] [2010]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.format}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5101 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.5101 ...mat Unordered and Ordered Lists}{format}
                                                   [2011] [2012] [2013]
[2014] [2015] [2016] [2017] [2018]
Underfull \hbox (badness 1622) in paragraph at lines 5624--5628
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2019] [2020] [2021] [2022] [2023]
Underfull \hbox (badness 1448) in paragraph at lines 6003--6008
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
[2024] [2025]
Overfull \hbox (96.78088pt too wide) in paragraph at lines 6153--6153
 []\T1/pcr/m/n/10 ## NB: The methods for \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 data.f
rame\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 and \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 array\
TS1/pcr/m/n/10 '  \T1/pcr/m/n/10 are identical to the \TS1/pcr/m/n/10 '\T1/pcr/
m/n/10 matrix\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 one[] 
[2026]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 6165--6165
 []\T1/pcr/m/n/10 tail(x, n = 6L, keepnums = TRUE, addrownums, ...) # exported 
as tail.matrix()[] 
[2027] [2028]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6299--6299
 []    \T1/pcr/m/n/9 ## BUT if I use "useAttrib(.)", this is *not* ok, when n i
s of length 2:[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 6300--6300
 []    \T1/pcr/m/n/9 ## --- because [i,j]-indexing of data frames *also* drops 
"other" attributes ..[] 
[2029] [2030]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6510--6510
 [] \T1/pcr/m/n/9 ## -> nicely formatted pdf -- including math formula -- for h
elp(dgamma):[] 
[2031]
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[]\T1/ptm/m/n/10 The post-ing guide ([][]$\T1/pcr/m/n/10 https : / / www . r-[]
project . org / posting-[]guide . html$[][]\T1/ptm/m/n/10 ), also
[2032]
Underfull \hbox (badness 1502) in paragraph at lines 6643--6648
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
Underfull \hbox (badness 2103) in paragraph at lines 6643--6648
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2033] [2034] [2035]
Underfull \hbox (badness 10000) in paragraph at lines 6816--6825
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
Underfull \hbox (badness 10000) in paragraph at lines 6816--6825
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 R.home("docs")/html/packages.html\T1/ptm/m/n/10 
', which can be re-made by
[2036]
Underfull \hbox (badness 2150) in paragraph at lines 6880--6883
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
Underfull \hbox (badness 5175) in paragraph at lines 6896--6899
[]\T1/pcr/m/n/10 hsearch_db() []\T1/ptm/m/n/10 builds and caches the help searc
h database for sub-se-quent use by
[2037] [2038]
Underfull \hbox (badness 3118) in paragraph at lines 7019--7021
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[2039] [2040]
Underfull \hbox (badness 5091) in paragraph at lines 7194--7196
[]\T1/ptm/m/n/10 download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
Underfull \hbox (badness 10000) in paragraph at lines 7224--7231
[]\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 means to use []\T1/pcr/m/n/10 c("Depends
", "Imports", "LinkingTo",
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\T1/pcr/m/n/10 "Suggests") []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pkgs []\T1/ptm
/m/n/10 and []\T1/pcr/m/n/10 c("Depends", "Imports",
Underfull \hbox (badness 1270) in paragraph at lines 7224--7231
\T1/pcr/m/n/10 "LinkingTo") []\T1/ptm/m/n/10 for added de-pen-den-cies: this in
-stalls all the pack-ages
[2041]
Underfull \hbox (badness 1270) in paragraph at lines 7239--7249
\T1/ptm/m/n/10 for the `[]\T1/pcr/m/n/10 --configure-args[]\T1/ptm/m/n/10 ' fla
g in the call to []\T1/pcr/m/n/10 R CMD INSTALL[]\T1/ptm/m/n/10 . If
Underfull \hbox (badness 4441) in paragraph at lines 7282--7285
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed to
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[]\T1/pcr/m/n/10 R CMD INSTALL []\T1/ptm/m/n/10 for a source pack-age in-stall.
 E.g., []\T1/pcr/m/n/10 c("--html",
Underfull \hbox (badness 1424) in paragraph at lines 7290--7293
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2042]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/pcr/m/n
/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages
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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/pcr/m/n/10 type = "source" []\T1/pt
m/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2043]
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[]\T1/pcr/m/n/10 install.packages []\T1/ptm/m/n/10 needs to be able to com-pute
 all the de-pen-den-cies of []\T1/pcr/m/n/10 pkgs []\T1/ptm/m/n/10 from
[2044]
Underfull \hbox (badness 10000) in paragraph at lines 7532--7537
[][][]\T1/pcr/m/n/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pac
kages[][][][]\T1/ptm/m/n/10 ,
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 []  \T1/pcr/m/n/9 configure.args = c(RNetCDF = "--with-netcdf-include=/usr/inc
lude/udunits2"))[] 
[2045]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
Underfull \hbox (badness 1983) in paragraph at lines 7605--7608
[]\T1/pcr/m/n/10 installed.packages []\T1/ptm/m/n/10 scans the `\T1/pcr/m/n/10 
DESCRIPTION\T1/ptm/m/n/10 ' files of each pack-age found along
[2046]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7652--7652
 []\T1/pcr/m/n/9 plic <- installed.packages(.Library, priority = "high", fields
 = "License")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7657--7657
 []\T1/pcr/m/n/9 ## Keep packages that come with R (priority="high") and all ot
hers separate![] 
[2047] [2048]
Underfull \hbox (badness 4132) in paragraph at lines 7783--7785
[]\T1/ptm/m/n/10 The ac-tual link-ing com-mand is con-structed by the ver-sion 
of []\T1/pcr/m/n/10 libtool []\T1/ptm/m/n/10 in-stalled at
[2049] [2050] [2051]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7950--7950
 []\T1/pcr/m/n/9 ls.str(mode = "list")   #- what are the structured objects I h
ave defined?[] 
[2052] [2053]
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 []\T1/pcr/m/n/10 make.socket(host = "localhost", port, fail = TRUE, server = F
ALSE) 
[2054]
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[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[2055]
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[]\T1/ptm/m/n/10 a sym-bol or char-ac-ter string nam-ing a class: only used if
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/pcr/m/n/10 methods(..)[]\T1/ptm
/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
[2056] [2057] [2058] [2059]
Underfull \hbox (badness 1859) in paragraph at lines 8471--8474
[]\T1/ptm/m/n/10 logical spec-i-fy-ing that the news should be opened in the br
owser (by
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\T1/ptm/m/n/10 ac-cord-ing to ver-sion us-ing \T1/pcr/m/n/10 section \T1/ptm/m/
n/10 el-e-ments with names start-ing with a suit-able pre-fix
[2060]
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[]\T1/ptm/m/n/10 A data frame in-her-it-ing from class []\T1/pcr/m/n/10 "news_d
b"[]\T1/ptm/m/n/10 , with [][][]\T1/pcr/m/n/10 attributes[][][] "package" []\T1
/ptm/m/n/10 (and
Overfull \hbox (25.98041pt too wide) in paragraph at lines 8576--8576
 []\T1/pcr/m/n/9 db4 <- news(Version == "4.0.0" & grepl("^BUG", Category) & gre
pl("PR#", Text),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 8584--8584
 []\T1/pcr/m/n/9 ## News from a date range (\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Matri
x\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 is there in a regular R installation):[] 
[2061]
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 []\T1/pcr/m/n/9 ## Which categories have been in use? % R-core maybe should st
andardize a bit more[] 
[2062]
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[]\T1/pcr/m/n/10 "B"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "KiB"[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 "MiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "GiB"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "TiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "PiB"[]\T1/ptm/m/
n/10 ,
[2063]
Underfull \vbox (badness 10000) has occurred while \output is active [2064]
[2065] [2066]
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 []            \T1/pcr/m/n/10 date.fields = c("Date", "Packaged", "Date/Publica
tion", "Built"),[] 
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 []            \T1/pcr/m/n/10 tryFormats = c("%Y-%m-%d", "%Y/%m/%d", "%D", "%m/
%d/%y"),[] 
Overfull \hbox (84.78088pt too wide) in paragraph at lines 8955--8955
 []            \T1/pcr/m/n/10 desc = packageDescription(pkg, lib.loc=lib.loc, f
ields=date.fields))[] 
[2067]
Underfull \hbox (badness 10000) in paragraph at lines 8983--8985
[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 asDateBuilt()[]\T1/ptm/m/n/10 , a [][][]\
T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string as from
Underfull \hbox (badness 10000) in paragraph at lines 8997--8999
[]\T1/pcr/m/n/10 packageVersion() []\T1/ptm/m/n/10 is a con-ve-nience short-cut
, al-low-ing things like []\T1/pcr/m/n/10 if
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[]\T1/ptm/m/n/10 If a `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the 
given pack-age is found and can suc-cess-fully be read,
[2068]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 9049--9049
 []          \T1/pcr/m/n/9 identical(pu, packageDate("stats"))) # as "utils" an
d "stats" are[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 9050--9050
 []                                   \T1/pcr/m/n/9 # both \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 base R\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and "Built" at same time[] 
[2069] [2070]
Underfull \hbox (badness 10000) in paragraph at lines 9178--9183
[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("ok", "upgrade",
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("installed", "not
[2071]
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 []       \T1/pcr/m/n/10 include = c("given", "family", "email", "role", "comme
nt"),[] 
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 []       \T1/pcr/m/n/10 braces = list(given = "", family = "", email = c("<", 
">"),[] 
[2072] [2073] [2074]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9481--9481
 []         \T1/pcr/m/n/9 "S original, <http://statwww.epfl.ch/davison/BMA/libr
ary.html>"),[] 
[2075] [2076]
Underfull \hbox (badness 1789) in paragraph at lines 9651--9653
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[2088]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 10489--10489
 []         \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", "
no.loss"),[] 
[2089] [2090]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 10650--10650
 []\T1/pcr/m/n/9 dd <- read.DIF(file.path(udir, "exDIF.dif"), header = TRUE, tr
anspose = TRUE)[] 
[2091] [2092] [2093]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 10831--10831
 []\T1/pcr/m/n/9 read.fwf(ff, widths = list(c(1,0, 2,3), c(2,2,2))) #> 1 NA 23 
456 98 76 54[] 
[2094]
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 []           \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss",
 "no.loss"),[] 
Overfull \hbox (72.78088pt too wide) in paragraph at lines 10918--10918
 []           \T1/pcr/m/n/10 row.names, col.names, as.is = !stringsAsFactors, t
ryLogical = TRUE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 10920--10920
 []           \T1/pcr/m/n/10 skip = 0, check.names = TRUE, fill = !blank.lines.
skip,[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 10925--10925
 []           \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, ski
pNul = FALSE)[] 
[2095]
Underfull \hbox (badness 2027) in paragraph at lines 10997--11000
[]\T1/ptm/m/n/10 Using []\T1/pcr/m/n/10 row.names = NULL []\T1/ptm/m/n/10 force
s row num-ber-ing. Miss-ing or []\T1/pcr/m/n/10 NULL
[2096]
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 de-ter-m
in-ing if columns con-sist-ing en-tirely of []\T1/pcr/m/n/10 "F"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1824) in paragraph at lines 11020--11024
[]\T1/pcr/m/n/10 "FALSE"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "TRUE" []\T1/pt
m/m/n/10 should be con-verted to [][][]\T1/pcr/m/n/10 logical[][][][]\T1/ptm/m/
n/10 ; passed to
[2097] [2098] [2099]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 11281--11281
 []\T1/pcr/m/n/10 readRegistry(key, hive = c("HLM", "HCR", "HCU", "HU", "HCC", 
"HPD"), 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 11282--11282
 []             \T1/pcr/m/n/10 maxdepth = 1, view = c("default", "32-bit", "64-
bit"))[] 
Underfull \hbox (badness 10000) in paragraph at lines 11289--11294
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are
Underfull \hbox (badness 10000) in paragraph at lines 11289--11294
\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 HKEY_CLASSES_ROOT[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 10000) in paragraph at lines 11289--11294
[]\T1/pcr/m/n/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_USER
S[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_CURRENT_CONFIG
[2100] [2101] [2102] [2103]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 11521--11521
 []        \T1/pcr/m/n/10 ipar <- list(mean = c(0, 1), vcov = c bind(c(1, 1), c
(1, 0))) 
[2104] [2105] [2106] [2107]
Underfull \hbox (badness 10000) in paragraph at lines 11787--11791
\T1/pcr/m/n/10 en . wikipedia . org / w / index . php ? title = Roman _ numeral
s & oldid = 78252134$[][]\T1/ptm/m/n/10 .
Overfull \hbox (20.58041pt too wide) in paragraph at lines 11805--11805
 []\T1/pcr/m/n/9 as.roman(c(NA, 1:3, "", strrep("I", 1:6))) # + NA with a warni
ng for "IIIIII"[] 
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 []\T1/pcr/m/n/9 ## simple consistency checks -- arithmetic when result is in  
{1,2,..,3899} :[] 
[2108] [2109]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 11946--11946
 []\T1/pcr/m/n/10 4. |     \-base:::tryCatchOne(expr, names, parentenv, handler
s[[1L]])[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 11947--11947
 []\T1/pcr/m/n/10 5. |       \-base:::doTryCatch(return(expr), name, parentenv,
 handler)[] 
[2110] [2111]
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 []\T1/pcr/m/n/10 Rprofmem(filename = "Rprofmem.out", append = FALSE, threshold
 = 0) 
[2112] [2113]
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[]\T1/ptm/m/n/10 If `[]\T1/pcr/m/n/10 --default-packages[]\T1/ptm/m/n/10 ' is n
ot used, then []\T1/pcr/m/n/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-me
nt vari-
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\T1/ptm/m/n/10 able []\T1/pcr/m/n/10 R_SCRIPT_DEFAULT_PACKAGES[]\T1/ptm/m/n/10 
. If this is set, then it takes prece-dence over
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 []\T1/pcr/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 sessionInfo()\TS1/pcr/m/n/9 '[] 
[2114] [2115]
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 []            \T1/pcr/m/n/10 restrict = c("functions", "descriptions", "news",
 "Rfunctions",[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 12330--12330
 []                         \T1/pcr/m/n/10 "Rmanuals", "READMEs", "views", "vig
nettes"),[] 
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 []            \T1/pcr/m/n/10 sortby = c("score", "date:late", "date:early", "s
ubject",[] 
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 []                       \T1/pcr/m/n/10 "subject:descending", "size", "size:de
scending"),[] 
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\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 score[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 date:
late []\T1/ptm/m/n/10 for sort-ing by date with lat-est re-sults first,
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\T1/ptm/m/n/10 der, []\T1/pcr/m/n/10 subject:descending []\T1/ptm/m/n/10 for re
-verse al-pha-bet-i-cal or-der, []\T1/pcr/m/n/10 size []\T1/ptm/m/n/10 or
[2116]
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 []\T1/pcr/m/n/9 fullquery <- RSiteSearch("lattice", restrict = c("vignettes","
Rfunctions"))[] 
[2117]
Underfull \hbox (badness 1377) in paragraph at lines 12457--12460
[]\T1/ptm/m/n/10 Character string spec-i-fy-ing whether emacs style ([]\T1/pcr/
m/n/10 "etags"[]\T1/ptm/m/n/10 ) or vi style
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / www . gnu . org / software /
[2118]
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 []             \T1/pcr/m/n/10 split = FALSE, quiet = FALSE, drop.evalFALSE = F
ALSE, ...)[] 
[2119] [2120]
Underfull \hbox (badness 10000) in paragraph at lines 12712--12716
[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 stylepath []\T1/ptm/m/n/10 i
s now taken from the en-vi-ron-ment vari-able
[2121]
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 The use of fancy quotes (see [][][]\T1/pcr/m/n/10 sQuote[][][]
[]\T1/ptm/m/n/10 ) can cause prob-lems when set-ting \T1/phv/m/n/10 R \T1/ptm/m
/n/10 out-put in
[2122] [2123]
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 []                 \T1/pcr/m/n/10 units = "in", type = "quartz", bg = "transpa
rent")[] 
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[2124]
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[]\T1/ptm/m/n/10 The file `\T1/pcr/m/n/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ures
 the R GUI ([]\T1/pcr/m/n/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows
 and
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[]\T1/ptm/m/n/10 At the time of writ-ing `\T1/pcr/m/n/10 Rdevga\T1/ptm/m/n/10 '
 con-fig-ured the map-ping of font num-bers to fonts, and
[2125] [2126] [2127] [2128] [2129]
Underfull \hbox (badness 1888) in paragraph at lines 13320--13323
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the plat-form \T1/phv/m/n/10
 R \T1/ptm/m/n/10 was built un-der. Where
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
g
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
g
[2130]
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 []\T1/pcr/m/n/9 toLatex(sI, locale = FALSE) # shortest; possibly desirable at 
end of report[] 
[2131]
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[]\T1/ptm/m/n/10 Repository `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' is treated
 spe-cially: the value is taken from the cur-rent set-ting of
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 []\T1/pcr/m/n/10 setWindowTitle(suffix, title = paste(getIdentification(), suf
fix)) 
[2132] [2133] [2134]
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2135]
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[]\T1/pcr/m/n/10 getSrcFilename []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 getSrcDir
ectory []\T1/ptm/m/n/10 re-turn char-ac-ter vec-tors hold-ing the file-
[2136] [2137] [2138]
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 []                       \T1/pcr/m/n/10 format(x, trim = TRUE, drop0trailing =
 TRUE, ...))[] 
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[]\T1/ptm/m/n/10 logical; if []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault),
 [][][]\T1/pcr/m/n/10 deparse[][][](control = <S>) []\T1/ptm/m/n/10 will not ha
ve
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[][][]\T1/pcr/m/n/10 options[][][]("width")[]\T1/ptm/m/n/10 ; note that this ha
s only a weak ef-fect, un-less
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[]\T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 options[][][][]\T1/ptm/m/n/10 ) whic
h de-faults to []\T1/pcr/m/n/10 "no" []\T1/ptm/m/n/10 for back com-pat-i-bil-it
y rea-sons;
[2139]
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[]\T1/ptm/m/n/10 numeric or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 as by de-fau
lt, de-ter-min-ing the []\T1/pcr/m/n/10 nlines []\T1/ptm/m/n/10 ar-gu-ment to
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 []\T1/pcr/m/n/9 str(.Machine, digits.d = 20) # extra digits for identification
 of binary numbers[] 
[2140]
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 []\T1/pcr/m/n/9 ## Truncation behavior (<-> correct width measurement) for "lo
ng" non-ASCII:[] 
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 []\T1/pcr/m/n/9 ## nchar.max: 1st line needs an increase of  2  in order to se
e  1  (in UTF-8!):[] 
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 # "1 is 1" here[] 
[2141] [2142] [2143]
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[]\T1/ptm/m/n/10 Options other than []\T1/pcr/m/n/10 memory = "none" []\T1/ptm/
m/n/10 ap-ply only to files pro-duced by
[2144]
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[]\T1/ptm/m/n/10 further ar-gu-ments passed to the driver's setup func-tion. Se
e
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[][][]\T1/pcr/m/n/10 RweaveLatexSetup[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/
m/n/10 RtangleSetup[][][][]\T1/ptm/m/n/10 , re-spec-tively, for the ar-gu-
[2145]
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fau
lt) then the avail-able syn-tax ob-jects are con-sulted in
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\T1/ptm/m/n/10 turn, and se-lected if their []\T1/pcr/m/n/10 extension []\T1/pt
m/m/n/10 com-po-nent matches (as a reg-exp) the file
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\T1/ptm/m/n/10 name. Ob-jects []\T1/pcr/m/n/10 SweaveSyntaxNoweb []\T1/ptm/m/n/
10 (with []\T1/pcr/m/n/10 extension = "[.][rsRS]nw$"[]\T1/ptm/m/n/10 ) and
[2146] [2147]
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\T1/ptm/m/n/10 si-bly use-ful val-ues in-clude `[]\T1/pcr/m/n/10 -h[]\T1/ptm/m/
n/10 ' (fol-low sym-bolic links, also `[]\T1/pcr/m/n/10 -L[]\T1/ptm/m/n/10 ' on
 some plat-forms),
Underfull \hbox (badness 1194) in paragraph at lines 14555--14563
\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 --acls[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --
exclude-backups[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --exclude-vcs[]\T1/ptm/m/n
/10 ' (and sim-i-lar) and on Win-dows
[2148]
Underfull \hbox (badness 1622) in paragraph at lines 14564--14571
[]\T1/ptm/m/n/10 A con-ve-nient and ro-bust way to set op-tions for GNU []\T1/p
cr/m/n/10 tar []\T1/ptm/m/n/10 is via en-vi-ron-ment vari-able
[2149]
Underfull \hbox (badness 5022) in paragraph at lines 14705--14709
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 is set t
o the com-mand []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment 
vari-able
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / pubs .
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\T1/pcr/m/n/10 opengroup . org / onlinepubs / 9699919799 / utilities / pax . ht
ml # tag _ 20 _ 92 _
[2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15330--15330
 []             \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc,
 ...),[] 
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 []             \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc,
 ...),[] 
[2159]
Underfull \hbox (badness 4467) in paragraph at lines 15357--15359
[]\T1/ptm/m/n/10 Download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
Underfull \hbox (badness 4660) in paragraph at lines 15372--15376
\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
Underfull \hbox (badness 1694) in paragraph at lines 15386--15390
[]\T1/ptm/m/n/10 by de-fault all in-stalled pack-ages, [][][]\T1/pcr/m/n/10 ins
talled.packages[][][](lib.loc =
Underfull \hbox (badness 10000) in paragraph at lines 15392--15397
[]\T1/ptm/m/n/10 Arguments such as []\T1/pcr/m/n/10 destdir []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 dependencies []\T1/ptm/m/n/10 to be
Underfull \hbox (badness 10000) in paragraph at lines 15392--15397
\T1/ptm/m/n/10 passed to [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 and []\T1/pcr/m/n/10 ignore_repo_cache[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 15392--15397
[]\T1/pcr/m/n/10 max_repo_cache_age []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 noCac
he []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 available.packages[][][]
Underfull \hbox (badness 1052) in paragraph at lines 15398--15400
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2160]
Underfull \hbox (badness 10000) in paragraph at lines 15428--15433
[]\T1/pcr/m/n/10 available = NULL []\T1/ptm/m/n/10 make a call to []\T1/pcr/m/n
/10 available.packages(contriburl =
Underfull \hbox (badness 1226) in paragraph at lines 15428--15433
\T1/pcr/m/n/10 contriburl, method = method) []\T1/ptm/m/n/10 and hence by de-fa
ult fil-ters on \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion, OS type
Underfull \hbox (badness 10000) in paragraph at lines 15449--15454
[]\T1/ptm/m/n/10 Take care when us-ing []\T1/pcr/m/n/10 dependencies []\T1/ptm/
m/n/10 (passed to [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 )
 with
Underfull \hbox (badness 10000) in paragraph at lines 15457--15460
[][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pa
ckages[][][][]\T1/ptm/m/n/10 ,
[2161]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 15534--15534
 []\T1/pcr/m/n/9 ## Not run: url.show("https://www.stats.ox.ac.uk/pub/datasets/
csb/ch3a.txt") 
[2162] [2163] [2164]
Underfull \hbox (badness 2293) in paragraph at lines 15741--15744
[][][]\T1/pcr/m/n/10 browseVignettes[][][] []\T1/ptm/m/n/10 for an HTML-based v
i-gnette browser; [][][]\T1/pcr/m/n/10 RShowDoc[][][](<basename>,
[2165]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 15757--15757
 []\T1/pcr/m/n/9 ## Note that \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 package = *\TS1/pcr
/m/n/9 ' \T1/pcr/m/n/9 is much faster in the case of many installed packages:[]
 
[2166]
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 []                      \T1/pcr/m/n/9 lm(weight ~ (Time + I(Time^2)) * Diet, d
ata = DAT)))[] 
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 []                 \T1/pcr/m/n/9 nls(weight ~ SSlogis(Time, Asym, xmid, scal),
 data = DD)))[] 
[2167] [2168]
Underfull \hbox (badness 1297) in paragraph at lines 15978--15980
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the ac-tion when that menu i
s se-lected, or
[2169]
Underfull \hbox (badness 4036) in paragraph at lines 16025--16027
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 winMenuDel []\T1/ptm/m/n/10 func-tion wil
l delete a menu and all of its items and sub-menus.
[2170] [2171]
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 []\T1/pcr/m/n/10 write.table(x, file = "", append = FALSE, quote = TRUE, sep =
 " ", 
[2172]
Underfull \hbox (badness 1715) in paragraph at lines 16197--16200
[]\T1/ptm/m/n/10 arguments to []\T1/pcr/m/n/10 write.table[]\T1/ptm/m/n/10 : []
\T1/pcr/m/n/10 append[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 col.names[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 sep[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dec []\T1/ptm/m/n
/10 and
Underfull \hbox (badness 10000) in paragraph at lines 16242--16244
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. []\T1/pcr/m/n/10 file =
[2173] [2174] [2175]) [2176] [2177] [2178] (./KernSmooth-pkg.tex
Chapter 15.
[2179]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 123--123
 []\T1/pcr/m/n/10 bkde2D(x, bandwidth, gridsize = c(51L, 51L), range.x, truncat
e = TRUE) 
[2180] [2181] [2182] [2183] [2184]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 518--518
 []\T1/pcr/m/n/10 dpill(x, y, blockmax = 5, divisor = 20, trim = 0.01, proptrun
 = 0.05, 
[2185] [2186] [2187] [2188]) (./MASS-pkg.tex
Chapter 16.
[2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 772--772
 []\T1/pcr/m/n/9 dreg <- cbind(sin = sin(2*pi*beav2$hours/24), cos = cos(2*pi*b
eav2$hours/24))[] 
[2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210]
[2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221]
[2222]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2418--2418
 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
"F"),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2422--2422
 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
"F"),[] 
[2223] [2224] [2225] [2226]
Underfull \hbox (badness 6559) in paragraph at lines 2701--2704
[]\T1/ptm/m/n/10 further ar-gu-ments for []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10
 and graph-i-cal pa-ram-e-ters. Note that
[2227] [2228] [2229]
Underfull \hbox (badness 10000) in paragraph at lines 2871--2876
[]\T1/pcr/m/n/10 "gamma"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "geometric"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "log-normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lo
gnormal"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 2871--2876
[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "negative binomi
al"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "Poisson"[]\T1/ptm/m/n/10 ,
[2230] [2231]
Underfull \hbox (badness 4686) in paragraph at lines 3043--3045
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2232] [2233] [2234]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3243--3243
 []            \T1/pcr/m/n/10 eps.max = .Machine$double.eps^0.25, verbose = FAL
SE, ...)[] 
[2235] [2236]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3373--3373
 []\T1/pcr/m/n/9 survreg(Surv(time, cens) ~ factor(pair) + treat, gehan, dist =
 "exponential")[] 
[2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247]
Underfull \hbox (badness 1845) in paragraph at lines 4173--4175
[]\T1/ptm/m/n/10 The va-ri-ety of bar-ley ([]\T1/pcr/m/n/10 "manchuria"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "svansota"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "velv
et"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trebi" []\T1/ptm/m/n/10 and
[2248] [2249] [2250] [2251] [2252] [2253] [2254]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4667--4667
 []        \T1/pcr/m/n/10 col = 5, xlab = deparse(substitute(data)), bty = "n",
 ...)[] 
[2255] [2256] [2257]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 4889--4889
 []\T1/pcr/m/n/10 lm.ridge(formula, data, subset, na.action, lambda = 0, model 
= FALSE, 
[2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268]
[2269] [2270] [2271]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 5944--5944
 []\T1/pcr/m/n/10 mvrnorm(n = 1, mu, Sigma, tol = 1e-6, empirical = FALSE, EISP
ACK = FALSE) 
[2272]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 6005--6005
 []\T1/pcr/m/n/10 negative.binomial(theta = stop("\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 theta\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 must be specified"), link = "log") 
[2273] [2274]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.npk}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6165 ...sical N, P, K Factorial Experiment}{npk}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.6165 ...sical N, P, K Factorial Experiment}{npk}
                                                   [2275] [2276] [2277]
[2278] [2279] [2280]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6585--6585
 []     \T1/pcr/m/n/9 start = list(fixed=c(L75=c(48.7, -0.03), lsc=0.24)), verb
ose = TRUE)))[] 
[2281]
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 []     \T1/pcr/m/n/10 dimen, abbrev = FALSE, ..., cex=0.7, type = c("std", "tr
ellis"))[] 
[2282] [2283] [2284] [2285] [2286] [2287]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7112--7112
 []\T1/pcr/m/n/9 nlmod <- nls(y ~  Const + A * exp(B * x), start=list(Const=100
, A=10, B=1))[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 7129--7129
 []     \T1/pcr/m/n/10 method = c("logistic", "probit", "loglog", "cloglog", "c
auchit"))[] 
[2288]
Underfull \hbox (badness 3138) in paragraph at lines 7207--7213
[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
[2289]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7277--7277
 []\T1/pcr/m/n/9 house.plr <- polr(Sat ~ Infl + Type + Cont, weights = Freq, da
ta = housing)[] 
[2290] [2291]
Underfull \hbox (badness 1389) in paragraph at lines 7386--7389
[]\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than 
[]\T1/pcr/m/n/10 min(p,
[2292] [2293]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7516--7516
 []\T1/pcr/m/n/9 fm <- lqs(stack.loss ~ ., data = stackloss, method = "S", nsam
p = "exact")[] 
[2294]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 7581--7581
 []        \T1/pcr/m/n/10 method = c("plug-in", "predictive", "debiased", "looC
V"), ...)[] 
[2295] [2296] [2297] [2298] [2299] [2300]
Underfull \hbox (badness 4686) in paragraph at lines 8019--8021
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2301] [2302]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 8138--8138
 []    \T1/pcr/m/n/10 maxit = 20, acc = 1e-4, test.vec = "resid", lqs.control =
 NULL)[] 
Underfull \hbox (badness 1590) in paragraph at lines 8162--8166
[]\T1/ptm/m/n/10 A func-tion to spec-ify the ac-tion to be taken if []\T1/pcr/m
/n/10 NA[]\T1/ptm/m/n/10 s are found. The
[2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313]
[2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 9542--9542
 []\T1/pcr/m/n/10 summary(object, method = c("XtX", "XtWX"), correlation = FALS
E, ...)[] 
[2323]
Underfull \hbox (badness 2035) in paragraph at lines 9654--9656
[]\T1/ptm/m/n/10 ``Fold your arms! Which is on top'' (Fac-tor, with lev-els []\
T1/pcr/m/n/10 "R on L"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "L on R"[]\T1/ptm/m/n
/10 ,
Underfull \hbox (badness 1158) in paragraph at lines 9669--9672
[]\T1/ptm/m/n/10 how much the stu-dent smokes. (Fac-tor, lev-els []\T1/pcr/m/n/
10 "Heavy"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Regul" []\T1/ptm/m/n/10 (reg-u-l
arly),
[2324]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 9751--9751
 []\T1/pcr/m/n/10 theta.md(y, mu, dfr, weights, limit = 20, eps = .Machine$doub
le.eps^0.25) 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 9753--9753
 []\T1/pcr/m/n/10 theta.ml(y, mu, n, weights, limit = 10, eps = .Machine$double
.eps^0.25,[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 9756--9756
 []\T1/pcr/m/n/10 theta.mm(y, mu, dfr, weights, limit = 10, eps = .Machine$doub
le.eps^0.25)[] 
[2325] [2326] [2327] [2328] [2329] [2330] [2331] [2332] [2333] [2334] [2335]
[2336] [2337]) (./Matrix-pkg.tex [2338]
Chapter 17.
Underfull \hbox (badness 10000) in paragraph at lines 35--38
[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
Underfull \hbox (badness 10000) in paragraph at lines 35--38
\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
[2339]
Underfull \hbox (badness 1769) in paragraph at lines 89--92
[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
[2340]
Underfull \hbox (badness 2229) in paragraph at lines 153--156
[]\T1/ptm/m/n/10 in gen-eral an ar-bi-trary num-ber of \T1/phv/m/n/10 R \T1/ptm
/m/n/10 ob-jects; here, when the first is
Underfull \hbox (badness 1147) in paragraph at lines 153--156
\T1/ptm/m/n/10 an []\T1/pcr/m/n/10 "[][]abIndex[][][]" []\T1/ptm/m/n/10 vec-tor
, these ar-gu-ments will be con-cate-nated to a new
[2341]
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[]\T1/ptm/m/n/10 these three meth-ods are sim-ply us-ing
Underfull \hbox (badness 10000) in paragraph at lines 262--264
[]\T1/ptm/m/n/10 There are more meth-ods, no-tably also for []\T1/pcr/m/n/10 "[
][]sparseVector[][][]"[]\T1/ptm/m/n/10 's, see
[2342] [2343]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 445--445
 []   \T1/pcr/m/n/9 band(sm5, -1, 1)# "dsyMatrix": symmetric band preserves sym
metry property[] 
[2344]
Underfull \hbox (badness 5119) in paragraph at lines 488--492
[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
Underfull \hbox (badness 1668) in paragraph at lines 492--497
[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
Overfull \hbox (4.38043pt too wide) in paragraph at lines 522--522
 []\T1/pcr/m/n/9 s1 <- bandSparse(13, k = -c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 524--524
 []\T1/pcr/m/n/9 s2 <- bandSparse(13, k =  c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
[2345]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 533--533
 []\T1/pcr/m/n/9 lLis <- lapply(list(rpois(20, 2), rpois(20,1), rpois(20,3))[c(
1:3,2:3,3:2)],[] 
[2346]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 647--647
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Fast version of Matrix :: .bd
iag() -- for the case of *many*  (k x k) matrices:[] 
Overfull \hbox (96.18033pt too wide) in paragraph at lines 648--648
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @param lmat list(<mat1>, <mat
2>, ....., <mat_N>)  where each mat_j is a  k x k \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 matrix\TS1/pcr/m/n/9 '[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 649--649
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @return a sparse (N*k x N*k) 
matrix of class  \code{"\linkS4class{dgCMatrix}"}.[] 
[2347]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 662--662
 []        \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 i :\TS1/pcr/m/n/9 ' \
T1/pcr/m/n/9 maybe there\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s a faster way (w/o matri
x indexing), but elegant?[] 
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 []        \T1/pcr/m/n/9 i = as.vector(matrix(0L:(M-1L), nrow=k)[, rep(seq_len(
N), each=k)]),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 668--668
 []\T1/pcr/m/n/9 l12 <- replicate(12, matrix(rpois(16, lambda = 6.4), 4,4), sim
plify=FALSE)[] 
[2348]
Underfull \hbox (badness 1874) in paragraph at lines 737--740
[]\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t
ion; [][]$\T1/pcr/m/n/10 https : / / netlib . org /
[2349] [2350]
Underfull \hbox (badness 1107) in paragraph at lines 859--864
\T1/ptm/m/n/10 sity'' of []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/
10 y[]\T1/ptm/m/n/10 , see e.g., the \T1/phv/m/n/10 R \T1/ptm/m/n/10 code in []
\T1/pcr/m/n/10 selectMethod(cbind2,
Underfull \hbox (badness 10000) in paragraph at lines 890--895
[]\T1/ptm/m/n/10 Our class def-i-ni-tion help pages men-tion-ing []\T1/pcr/m/n/
10 cbind2() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 rbind2() []\T1/ptm/m/n/10 met
h-ods:
[2351]
Overfull \hbox (72.78088pt too wide) in paragraph at lines 954--954
 []\T1/pcr/m/n/10 ##   solve(a, b, system = c("A","LDLt","LD","DLt","L","Lt","D
","P","Pt"), ...)[] 
[2352]
Underfull \hbox (badness 3612) in paragraph at lines 1041--1044
[]\T1/pcr/m/n/10 signature(from = "CHMfactor", to = "pMatrix") []\T1/ptm/m/n/10
 re-turns the per-mu-ta-tion
[2353]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cho
l}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1141 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic
ate ignored
<to be read again> 
                   \relax 
l.1141 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                   [2354] [2355]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1288--1288
 []\T1/pcr/m/n/9 ## --> see Cholesky() and its examples, for the pivot structur
e & factorization[] 
[2356]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1383--1383
 []\T1/pcr/m/n/10 Cholesky(A, perm = TRUE, LDL = !super, super = FALSE, Imult =
 0, ...) 
Underfull \hbox (badness 2277) in paragraph at lines 1411--1414
[]\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer
-ent types of ma-tri-ces. Use
[2357] [2358]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1485--1485
 []\T1/pcr/m/n/9 ## hence, the identical() check *should* work, but fails on so
me GOTOblas:[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1499--1499
 []\T1/pcr/m/n/9 dq <- function(ch) paste(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 "\TS1/p
cr/m/n/9 '\T1/pcr/m/n/9 ,ch,\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 "\TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 , sep="") ## dQuote(<UTF-8>) gives bad plots[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 1507--1507
 []\T1/pcr/m/n/9 (opts <- expand.grid(perm = c(TRUE,FALSE), LDL = c(TRUE,FALSE)
, super = c(FALSE,TRUE)))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1516--1516
 []\T1/pcr/m/n/9 str(re <- lapply(rr, expand), max.level=2) ## each has a \TS1/
pcr/m/n/9 '\T1/pcr/m/n/9 P\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and a \TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 L\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 matrix[] 
[2359]
Underfull \hbox (badness 10000) in paragraph at lines 1552--1559
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("Cholesky", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 4673) in paragraph at lines 1552--1559
[]\T1/pcr/m/n/10 new("BunchKaufman", ...)[]\T1/ptm/m/n/10 , etc, or rather by c
alls of the form [][][]\T1/pcr/m/n/10 chol[][][](pm) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 1783) in paragraph at lines 1587--1591
[]\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1
/ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend
Underfull \hbox (badness 1221) in paragraph at lines 1603--1609
\T1/ptm/m/n/10 ply an $\OML/cmm/m/it/10 n \OMS/cmsy/m/n/10 ^^B \OML/cmm/m/it/10
 n$ \T1/ptm/m/n/10 nu-meric [][][]\T1/pcr/m/n/10 matrix[][][][]\T1/ptm/m/n/10 .
 Hence, for com-pat-i-bil-ity, the []\T1/pcr/m/n/10 "Cholesky" []\T1/ptm/m/n/10
 and
[2360]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col
Sums}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1644 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.1644 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.1645 \aliasA{colMeans}{colSums}{colMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.1658 \aliasA{rowMeans}{colSums}{rowMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1665 \aliasA{rowSums}{colSums}{rowSums}
                                          [2361]
Underfull \hbox (badness 2922) in paragraph at lines 1715--1719
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sparse, i.e., i
n-her-it-ing from
Underfull \hbox (badness 1728) in paragraph at lines 1715--1719
\T1/ptm/m/n/10 class [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/n/10 . 
Only ap-pli-ca-ble when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is in-her-it-ing fr
om a
Underfull \hbox (badness 1237) in paragraph at lines 1726--1729
[][][]\T1/pcr/m/n/10 dimnames[][][](x) []\T1/ptm/m/n/10 are only kept (as [][][
]\T1/pcr/m/n/10 names[][][](v)[]\T1/ptm/m/n/10 ) when the re-sult-ing []\T1/pcr
/m/n/10 v []\T1/ptm/m/n/10 is [][][]\T1/pcr/m/n/10 numeric[][][][]\T1/ptm/m/n/1
0 , since
[2362] [2363]
Underfull \hbox (badness 3547) in paragraph at lines 1880--1883
[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2364] [2365] [2366] [2367] [2368]
Underfull \hbox (badness 7379) in paragraph at lines 2383--2385
[]\T1/pcr/m/n/10 signature(x = "dgCMatrix")[]\T1/ptm/m/n/10 : com-putes the LU 
de-com-po-si-tion of a square
[2369] [2370] [2371]
Underfull \hbox (badness 4846) in paragraph at lines 2608--2612
[]\T1/ptm/m/n/10 Note that both []\T1/pcr/m/n/10 new(.) []\T1/ptm/m/n/10 and []
[][]\T1/pcr/m/n/10 spMatrix[][][] []\T1/ptm/m/n/10 con-struc-tors for []\T1/pcr
/m/n/10 "dgTMatrix" []\T1/ptm/m/n/10 (and other
Underfull \hbox (badness 2717) in paragraph at lines 2613--2617
[]\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in
 more than one pos-si-ble
Underfull \hbox (badness 10000) in paragraph at lines 2620--2623
[]\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 dgCMatrix[][][] []\T1/ptm/m/n/10 or
 the su-per-classes [][][]\T1/pcr/m/n/10 dsparseMatrix[][][] []\T1/ptm/m/n/10 a
nd [][][]\T1/pcr/m/n/10 TsparseMatrix[][][][]\T1/ptm/m/n/10 ;
[2372]
Underfull \hbox (badness 5231) in paragraph at lines 2657--2662
[]\T1/ptm/m/n/10 Construct a for-mally di-ag-o-nal [][][]\T1/pcr/m/n/10 Matrix[
][][][]\T1/ptm/m/n/10 , i.e., an ob-ject in-her-it-ing from vir-tual class
Overfull \hbox (84.78088pt too wide) in paragraph at lines 2668--2668
 []\T1/pcr/m/n/10 .sparseDiagonal(n, x = NULL, uplo = "U", shape = "t", unitri 
= TRUE, kind, cols)[] 
[2373]
Underfull \hbox (badness 10000) in paragraph at lines 2724--2727
[]\T1/pcr/m/n/10 .trDiagonal() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 .symDiagon
al() []\T1/ptm/m/n/10 are sim-ple wrap-pers, for
Underfull \hbox (badness 6792) in paragraph at lines 2724--2727
[]\T1/pcr/m/n/10 .sparseDiagonal(shape = "t") []\T1/ptm/m/n/10 and []\T1/pcr/m/
n/10 .sparseDiagonal(shape = "s")[]\T1/ptm/m/n/10 , re-spec-
[2374]
Underfull \hbox (badness 3646) in paragraph at lines 2821--2824
[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 dimnames[][][][]\T1/ptm/m/n/10 , a []
[][]\T1/pcr/m/n/10 list[][][][]\T1/ptm/m/n/10 , see the [][][]\T1/pcr/m/n/10 Ma
trix[][][] []\T1/ptm/m/n/10 class de-scrip-tion. Typ-i-cally
Underfull \hbox (badness 6542) in paragraph at lines 2856--2860
[]\T1/pcr/m/n/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these gr
oup meth-ods re-turn a
Underfull \hbox (badness 4518) in paragraph at lines 2865--2871
[]\T1/pcr/m/n/10 signature(e1 = "ddiMatrix", e2="denseMatrix")[]\T1/ptm/m/n/10 
: the re-sult is from class
[2375]
Underfull \hbox (badness 10000) in paragraph at lines 2872--2876
[]\T1/pcr/m/n/10 (object = "diagonalMatrix")[]\T1/ptm/m/n/10 : Re-turns an ob-j
ect of S3 class
Underfull \hbox (badness 2318) in paragraph at lines 2882--2886
[][][]\T1/pcr/m/n/10 Diagonal[][][]() []\T1/ptm/m/n/10 as con-struc-tor of thes
e ma-tri-ces, and [][][]\T1/pcr/m/n/10 isDiagonal[][][][]\T1/ptm/m/n/10 . [][][
]\T1/pcr/m/n/10 ddiMatrix[][][] []\T1/ptm/m/n/10 and
[2376] [2377] [2378]
Underfull \hbox (badness 10000) in paragraph at lines 3136--3138
[]\T1/pcr/m/n/10 signature(x = "dMatrix", digits = "numeric")[]\T1/ptm/m/n/10 :
 this group con-tains
[2379] [2380]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 3276--3276
 []\T1/pcr/m/n/9 stopifnot(all.equal(S9p0, S9p))# same as as default, but diffe
rent from the random one[] 
[2381]
Underfull \hbox (badness 2469) in paragraph at lines 3386--3389
[]\T1/pcr/m/n/10 signature(x = "dpoMatrix")[]\T1/ptm/m/n/10 : Re-turns the [][]
[]\T1/pcr/m/n/10 determinant[][][] []\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 x[]\T1/
ptm/m/n/10 , via
[2382]
Underfull \hbox (badness 10000) in paragraph at lines 3409--3414
[]\T1/ptm/m/n/10 Currently the va-lid-ity meth-ods for these classes such as
Underfull \hbox (badness 2020) in paragraph at lines 3409--3414
[][][]\T1/pcr/m/n/10 getValidity[][][](getClass("dpoMatrix")) []\T1/ptm/m/n/10 
for ef-fi-ciency rea-sons only check the di-
Underfull \hbox (badness 1748) in paragraph at lines 3415--3424
\T1/pcr/m/n/10 error=identity), "error") []\T1/ptm/m/n/10 . In-deed, when \T1/p
tm/m/it/10 co-erc-ing \T1/ptm/m/n/10 to these classes, a ver-sion
Underfull \hbox (badness 1590) in paragraph at lines 3415--3424
\T1/ptm/m/n/10 of [][][]\T1/pcr/m/n/10 Cholesky[][][]() []\T1/ptm/m/n/10 or [][
][]\T1/pcr/m/n/10 chol[][][]() []\T1/ptm/m/n/10 is typ-i-cally used, e.g., see 
[]\T1/pcr/m/n/10 selectMethod("coerce",
[2383]
Underfull \hbox (badness 10000) in paragraph at lines 3541--3545
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsCMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 2103) in paragraph at lines 3541--3545
[]\T1/pcr/m/n/10 new("dsTMatrix", ...)[]\T1/ptm/m/n/10 , or au-to-mat-i-cally v
ia e.g., []\T1/pcr/m/n/10 as(*, "symmetricMatrix")[]\T1/ptm/m/n/10 ,
[2384]
Underfull \hbox (badness 1571) in paragraph at lines 3591--3594
[]\T1/pcr/m/n/10 signature(x = "dsCMatrix", pivot = "logical")[]\T1/ptm/m/n/10 
: Re-turns (and stores) the
[2385] [2386]
Underfull \hbox (badness 10000) in paragraph at lines 3739--3744
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "dMatrix"[]\T1/ptm/m/n/10 , by class []
\T1/pcr/m/n/10 "dsparseMatrix"[]\T1/ptm/m/n/10 , class []\T1/pcr/m/n/10 "sparse
Matrix"[]\T1/ptm/m/n/10 , by
Underfull \hbox (badness 6961) in paragraph at lines 3739--3744
\T1/ptm/m/n/10 class []\T1/pcr/m/n/10 "dsparseMatrix" []\T1/ptm/m/n/10 or []\T1
/pcr/m/n/10 "RsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/pcr/m/n/10 "compMatri
x" []\T1/ptm/m/n/10 by class
Underfull \hbox (badness 1400) in paragraph at lines 3751--3754
[]\T1/pcr/m/n/10 signature(x = "dsRMatrix", uplo = "character")[]\T1/ptm/m/n/10
 : if []\T1/pcr/m/n/10 uplo ==
[2387]
Underfull \hbox (badness 10000) in paragraph at lines 3802--3804
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsyMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 1365) in paragraph at lines 3838--3841
[]\T1/pcr/m/n/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/10
 , or []\T1/pcr/m/n/10 x = "dsyMatrix"
[2388]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3883--3883
 []\T1/pcr/m/n/9 stopifnot(all(S1 == S2)) # equal "seen as matrix", but differ 
internally :[] 
[2389] [2390]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3989--3989
 []\T1/pcr/m/n/9 U5 <- new("dtCMatrix", i= c(1L, 0:3), p=c(0L,0L,0:2, 5L), Dim 
= c(5L, 5L),[] 
Underfull \hbox (badness 3635) in paragraph at lines 4043--4047
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ddenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Cla
ss
Underfull \hbox (badness 10000) in paragraph at lines 4052--4055
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
[2391]
Underfull \hbox (badness 10000) in paragraph at lines 4055--4059
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/n
/10 : the
[2392] [2393]
Underfull \hbox (badness 2065) in paragraph at lines 4224--4228
[]\T1/pcr/m/n/10 signature(a = "dtrMatrix", b = "....")[]\T1/ptm/m/n/10 efficie
ntely use a ``for-ward-solve'' or
[2394] [2395] [2396] [2397]
Overfull \hbox (112.38031pt too wide) in paragraph at lines 4481--4481
 []\T1/pcr/m/n/9 str(jgl009 <- ## https://math.nist.gov/MatrixMarket/data/Harwe
ll-Boeing/counterx/counterx.html[] 
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 [] \T1/pcr/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB
/Boeing/msc00726.tar.gz"))))[] 
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 []\T1/pcr/m/n/9 ## Store as MatrixMarket (".mtx") file, here inside temporary 
dir./folder:[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4495--4495
 []\T1/pcr/m/n/9 file.info(MMfile)[,c("size", "ctime")] # (some confirmation of
 the file\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s)[] 
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 []\T1/pcr/m/n/9 ## has columns (i, j, x) -> we can use via do.call() as argume
nts to sparseMatrix():[] 
[2398] [2399] [2400]
Underfull \hbox (badness 2237) in paragraph at lines 4683--4688
[]\T1/ptm/m/n/10 a string ([]\T1/pcr/m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "R"[]\T1/ptm/m/n/10 , or []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 ) spec-i-fy-i
ng the stor-age of the re-sult as
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[]\T1/ptm/m/n/10 a string, one of []\T1/pcr/m/n/10 "trace", "sumLog", "prod", "
min", "max",
[2401] [2402] [2403] [2404]
Underfull \hbox (badness 10000) in paragraph at lines 5033--5038
[]\T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 compMatrix[][][][]\T1/ptm/m/n/10 
, and the non-general vir-tual classes: [][][]\T1/pcr/m/n/10 symmetricMatrix[][
][][]\T1/ptm/m/n/10 ,
[2405]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5114--5114
 []\T1/pcr/m/n/9 if(isTRUE(try(require(graph)))) { ## super careful .. for "che
cking reasons" 
[2406]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5116--5116
 []  \T1/pcr/m/n/9 show(a1 <- sparseMatrix(i= c(1:4),   j=c(2:4,1),   x = 2,   
 dimnames=dns))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5120--5120
 []  \T1/pcr/m/n/9 show(a2 <- sparseMatrix(i= c(1:4,4), j=c(2:4,1:2), x = TRUE,
 dimnames=dns))[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 5127--5127
 []  \T1/pcr/m/n/9 a. <- sparseMatrix(i= 4:1, j=1:4, dimnames=list(n4,n4), give
C=FALSE) # no \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 x\TS1/pcr/m/n/9 '[] 
[2407] [2408]
Underfull \hbox (badness 4120) in paragraph at lines 5266--5269
[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
][]\T1/pcr/m/n/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use
Overfull \hbox (47.58038pt too wide) in paragraph at lines 5284--5284
 []\T1/pcr/m/n/9 stopifnot(!is.null(leg <- imgC$legend), is.list(leg$right)) # 
failed for 2 days ..[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5304--5304
 []\T1/pcr/m/n/9 ## Using (xlim,ylim) has advantage : matrix dimension and (col
/row) indices:[] 
[2409]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 5310--5310
 [] \T1/pcr/m/n/9 I2 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE,    
    border.col=NA)[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 5311--5311
 [] \T1/pcr/m/n/9 I3 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd
=2, border.col=NA)[] 
Overfull \hbox (144.78027pt too wide) in paragraph at lines 5315--5315
 []\T1/pcr/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor
der.col = adjustcolor("skyblue", 1/2))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5323--5323
 []\T1/pcr/m/n/9 image(USCounties, useRaster = TRUE) # should not suffer from a
nti-aliasing[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 5326--5326
 []   \T1/pcr/m/n/9 ## and now look at the *.png image in a viewer you can easi
ly zoom in and out[] 
[2410]
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[]\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o
r \T1/ptm/m/n/10 us-ing []\T1/pcr/m/n/10 drop=FALSE[]\T1/ptm/m/n/10 ) stays wit
hin the
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[]\T1/pcr/m/n/10 signature(x = "matrix", y = "indMatrix") []\T1/ptm/m/n/10 and 
other sig-na-tures (use
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[]\T1/pcr/m/n/10 signature(from = "integer", to = "indMatrix")[]\T1/ptm/m/n/10 
: This en-ables typ-i-cal
[2411]
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[]\T1/pcr/m/n/10 signature(from = "list", to = "indMatrix")[]\T1/ptm/m/n/10 : T
he list must have two
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[]\T1/pcr/m/n/10 signature(X = "indMatrix", Y = "indMatrix")[]\T1/ptm/m/n/10 : 
re-turn the kro-necker
[2412] [2413] [2414] [2415]
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 []\T1/pcr/m/n/10 isSymmetric(object, tol = 100 * .Machine$double.eps, tol1 = 8
 * tol, checkDN = TRUE, ...)[] 
[2416]
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 []\T1/pcr/m/n/10 isSymmetric(object, tol = 100 * .Machine$double.eps, checkDN 
= TRUE, ...)[] 
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 []\T1/pcr/m/n/9 isSymmetric(as(M, "generalMatrix")) # still symmetric, even if
 not "formally"[] 
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 []\T1/pcr/m/n/9 showMethods("isSymmetric", includeDefs = TRUE) # includes S3 g
eneric from base[] 
[2417]
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 []\T1/pcr/m/n/9 isTriangular(as(M, "generalMatrix")) # still triangular, even 
if not "formally"[] 
[2418]
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 []\T1/pcr/m/n/10 KhatriRao(X, Y = X, FUN = "*", sparseY = TRUE, make.dimnames 
= FALSE) 
[2419]
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 []\T1/pcr/m/n/9 stopifnot(all(K1 <- KhatriRao(nd, zm) == 0), identical(dim(K1)
, c(12L, 4L)),[] 
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 []          \T1/pcr/m/n/9 all(K2 <- KhatriRao(zm, nd) == 0), identical(dim(K2)
, c(12L, 4L)))[] 
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 []  \T1/pcr/m/n/9 identical(dimnames(KhatriRao(m, d0, make.dimnames=TRUE)), di
mnames(Kmd)))[] 
[2420] [2421]
Underfull \hbox (badness 1062) in paragraph at lines 6307--6310
[]\T1/pcr/m/n/10 ldenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
[2422]
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[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2423]
Underfull \hbox (badness 2635) in paragraph at lines 6478--6483
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ldenseMatrix"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 4229) in paragraph at lines 6478--6483
\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 6486--6489
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2424]
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[]\T1/pcr/m/n/10 lsTMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltTMatrix[]\T
1/ptm/m/n/10 ) or in com-pressed column-oriented form (class
Underfull \hbox (badness 1242) in paragraph at lines 6553--6563
[][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pc
r/m/n/10 lgCMatrix[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lsCMatrix[]\T1/ptm/m/n/10
 , and []\T1/pcr/m/n/10 ltCMatrix[]\T1/ptm/m/n/10 ) or--\T1/ptm/m/it/10 rarely\
T1/ptm/m/n/10 --in
[2425]
Underfull \hbox (badness 3179) in paragraph at lines 6635--6638
[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2426]
Underfull \hbox (badness 10000) in paragraph at lines 6720--6723
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2427]
Underfull \hbox (badness 10000) in paragraph at lines 6781--6784
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2428]
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\T1/ptm/m/n/10 should be sig-nalled when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is
 sin-gu-lar. When []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is sin-gu-lar, []\T1/pcr/
m/n/10 lu(x,
Underfull \hbox (badness 1675) in paragraph at lines 6880--6883
[]\T1/pcr/m/n/10 lu() []\T1/ptm/m/n/10 is a generic func-tion with spe-cial met
h-ods for dif-fer-ent types of ma-tri-ces. Use
[2429]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6952--6952
 []                                \T1/pcr/m/n/9 # q is a 0-based permutation o
f the columns[] 
[2430] [2431]
Underfull \hbox (badness 10000) in paragraph at lines 7092--7095
[]\T1/ptm/m/n/10 vector of all non-zero en-tries of []\T1/pcr/m/n/10 x[]\T1/ptm
/m/n/10 ; ex-ists \T1/ptm/b/n/10 only \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 as(x
,
Underfull \hbox (badness 1490) in paragraph at lines 7114--7116
[]\T1/pcr/m/n/10 mat2triplet() []\T1/ptm/m/n/10 is con-cep-tu-ally the \T1/ptm/
m/it/10 in-verse \T1/ptm/m/n/10 func-tion of [][][]\T1/pcr/m/n/10 spMatrix[][][
] []\T1/ptm/m/n/10 and (one case of)
[2432] [2433] [2434]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.det}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7305 \aliasA{det}{Matrix-class}{det}
                                      
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[]\T1/pcr/m/n/10 signature(x = "Matrix", value = "list")[]\T1/ptm/m/n/10 : set 
the []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 to a
Underfull \hbox (badness 10000) in paragraph at lines 7406--7409
[2435]
Underfull \hbox (badness 10000) in paragraph at lines 7415--7417
[]\T1/pcr/m/n/10 signature(from = "ANY", to = "Matrix")[]\T1/ptm/m/n/10 : This 
re-lies on a cor-rect
[2436]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp
cent.*.Rpcent.}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7478 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.crossprod}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.7575 ...A{crossprod}{matrix-products}{crossprod}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.7676 ...tcrossprod}{matrix-products}{tcrossprod}
                                                  
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\T1/ptm/m/n/10 ally im-ple-mented ef-fi-ciently with-out com-put-ing [][][]\T1/
pcr/m/n/10 t[][][](.)[]\T1/ptm/m/n/10 's un-nec-es-sar-ily. They also re-turn
[2437]
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[]\T1/pcr/m/n/10 signature(x = "dgeMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
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[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-tures (use
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[]\T1/pcr/m/n/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-tr
ix mul-ti-pli-ca-tion. Mul-ti-
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\T1/ptm/m/n/10 sig-na-tures, use []\T1/pcr/m/n/10 showMethods("crossprod", clas
s = "dgeMatrix")[]\T1/ptm/m/n/10 , ma-trix
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[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-
[2438] [2439]
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[]\T1/pcr/m/n/10 ndenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
[2440]
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[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2441]
Underfull \hbox (badness 3312) in paragraph at lines 8131--8133
[]\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/pcr/m/n/10 X <- (X + t(X))/2 []
\T1/ptm/m/n/10 should be done, af-ter []\T1/pcr/m/n/10 X <-
[2442] [2443]
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 []   \T1/pcr/m/n/9 all.equal(n.A.m, unname(as.matrix(n.A$mat)), tolerance = 1e
-15)# seen rel.d.= 1.46e-16[] 
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 []\T1/pcr/m/n/9 stopifnot(all.equal(ncr, ncF))# norm type does not matter at a
ll in this example[] 
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[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ndenseMatrix"[]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 8337--8340
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2445]
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[]\T1/pcr/m/n/10 signature(from = "matrix", to = "nMatrix")[]\T1/ptm/m/n/10 : N
ote that these co-er-cions
[2446]
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[]\T1/ptm/m/n/10 fast sim-
[2447]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor
m}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8557 \HeaderA{norm}{Matrix Norms}{norm}
                                         pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.8557 \HeaderA{norm}{Matrix Norms}{norm}
                                          [2448]
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 []\T1/pcr/m/n/9 A <- sparseMatrix(i, j, x = x)                      ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 8652--8652
 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
Underfull \hbox (badness 2401) in paragraph at lines 8708--8718
[]\T1/ptm/m/n/10 These can be stored in the ``triplet'' form ([][][]\T1/pcr/m/n
/10 TsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pcr/m/n/10 ngTMatri
x[]\T1/ptm/m/n/10 ,
[2449]
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[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2450]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2451]
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[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2452] [2453]
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "missing", dr
op =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "missing", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "missing", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "missing", dro
p =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "missing", dr
op =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "NULL", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "NULL", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "index", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "index", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "index", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "index", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "index", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "missing", dr
op =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "missing", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "missing", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "missing", dro
p =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "missing", dr
op =
[2454]
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "NULL", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "NULL", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "NULL", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "index", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "index", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "index", drop =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "index", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "index", drop
 =
[2455]
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[]\T1/pcr/m/n/10 signature(x = "matrix", y = "pMatrix") []\T1/ptm/m/n/10 and ot
her sig-na-tures (use
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[]\T1/pcr/m/n/10 signature(from = "integer", to = "pMatrix")[]\T1/ptm/m/n/10 : 
This is en-ables typ-i-cal
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[]\T1/pcr/m/n/10 signature(x = "pMatrix", logarithm="logical")[]\T1/ptm/m/n/10 
: Since per-mu-ta-
Underfull \hbox (badness 3229) in paragraph at lines 9149--9153
\T1/ptm/m/n/10 trix; note that []\T1/pcr/m/n/10 solve(P) []\T1/ptm/m/n/10 is id
en-ti-cal to []\T1/pcr/m/n/10 t(P) []\T1/ptm/m/n/10 for per-mu-ta-tion ma-tri-c
es. See
[2456] [2457]
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 []               \T1/pcr/m/n/10 col.names, note.dropping.colnames = TRUE, uniD
iag = TRUE,[] 
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 []\T1/pcr/m/n/10 printSpMatrix(x, digits = NULL, maxp = max(100L, getOption("m
ax.print")),[] 
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 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
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 []\T1/pcr/m/n/10 printSpMatrix2(x, digits = NULL, maxp = max(100L, getOption("
max.print")),[] 
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 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
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[]\T1/ptm/m/n/10 logical or string spec-i-fy-ing if and how col-umn names of []
\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 should
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\T1/ptm/m/n/10 be printed, pos-si-bly ab-bre-vi-ated. The de-fault is taken fro
m
[2458] [2459]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.qr}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9364 \aliasA{qr}{qr-methods}{qr}
                                   [2460]
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 []\T1/pcr/m/n/9 stopifnot(identical(dimnames(X), dnX))# some versions changed 
X\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s dimnames![] 
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 []\T1/pcr/m/n/9 qxrLA <- qr(m(Xr), LAPACK=TRUE) # => qr.fitted(), qr.resid() n
ot supported[] 
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 []\T1/pcr/m/n/9 ##----- rank-deficient ("singular") case ---------------------
---------------[] 
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 []\T1/pcr/m/n/9 (X. <- drop0(Q. %*% R.[, qI], tol=tolE))## just = X, incl. cor
rect colnames[] 
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[]\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/pcr/m/n/10 
qr[][][](x, tol,
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[]\T1/ptm/m/n/10 is for back com-pat-i-bil-ity; for dense []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 , it cor-re-sponds to
[2462] [2463]
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 []\T1/pcr/m/n/9 ## The meaning of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 tol\TS1/pcr/m/
n/9 ' \T1/pcr/m/n/9 for method="qrLINPACK" and *dense* x is not entirely "scale
 free"[] 
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 []\T1/pcr/m/n/9 sapply(meths, function(.m.) rankMatrix(M15, method = .m., tol 
= 1e-7)) # all 14[] 
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 []\T1/pcr/m/n/9 (st1 <- system.time(r1 <- rankMatrix(L)))                # war
ning+ ~1.5 sec (2013)[] 
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 []\T1/pcr/m/n/9 (st2 <- system.time(r2 <- rankMatrix(L, method = "qr"))) # con
siderably faster![] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9688 ... the Reciprocal Condition Number}{rcond}
                                                   [2464] [2465]
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 []\T1/pcr/m/n/9 rcond(x2 <- cbind(x1, 2:11))# practically 0, since x2 does not
 have full rank[] 
[2466] [2467] [2468]
Underfull \hbox (badness 2150) in paragraph at lines 9997--10005
\T1/ptm/m/n/10 dices, if not []\T1/pcr/m/n/10 symmetric [][]sample.int[][][](nr
ow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/pcr/m/n/10 rand.x []\T1/ptm/m/n
/10 is not
[2469] [2470]
Underfull \hbox (badness 1558) in paragraph at lines 10137--10140
[]\T1/ptm/m/n/10 numeric square Ma-trix (in-her-it-ing from class []\T1/pcr/m/n
/10 "Matrix"[]\T1/ptm/m/n/10 ) or tra-di-tional
[2471]
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 []                           \T1/pcr/m/n/9 z[order(Mod(z), decreasing=TRUE)]})
, tolerance = 1e-13),[] 
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 []\T1/pcr/m/n/9 ## For the faint of heart, we provide Schur() also for traditi
onal matrices:[] 
[2472]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sol
ve}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10265 \aliasA{solve}{solve-methods}{solve}
                                            
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 []\T1/pcr/m/n/10 ## solve(a, b, ...) # the two-argument version, almost always
 preferred to 
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 []\T1/pcr/m/n/10 solve(a, b, system = c("A", "LDLt", "LD", "DLt", "L", "Lt", "
D", "P", "Pt"), ...)[] 
[2473]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 solve []\T1/ptm/m/n/10 meth-ods for a
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[]\T1/ptm/m/n/10 (for all []\T1/pcr/m/n/10 b[]\T1/ptm/m/n/10 ) work via []\T1/p
cr/m/n/10 as(a,
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list []\T1/pcr/m/n/10 (
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list []\T1/pcr/m/n/10 (
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\T1/pcr/m/n/10 sparse=FALSE, tol = .Machine$double.eps ) []\T1/ptm/m/n/10 : Che
cks if []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 is sym-met-ric,
[2474]
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[]\T1/ptm/m/n/10 All these meth-ods first try Cholmod's
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[]\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines
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[]\T1/ptm/m/n/10 works via []\T1/pcr/m/n/10 as(b,
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[]\T1/ptm/m/n/10 these meth-ods typ-i-cally use
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[]\T1/ptm/m/n/10 all work via []\T1/pcr/m/n/10 as(a,
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[][][]\T1/pcr/m/n/10 solve[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lu[][][
][]\T1/ptm/m/n/10 , and class doc-u-men-ta-tions [][][]\T1/pcr/m/n/10 CHMfactor
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 sparseLU[][][][]\T1/ptm/m/n/10 , 
and
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 []\T1/pcr/m/n/9 image(ia0 <- solve(a)) # checker board, dense [but really, a i
s singular!][] 
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 []  \T1/pcr/m/n/9 ## Fails on 32-bit [Fedora 19, R 3.0.2] from Matrix 1.1-0 on
 [FIXME ??] only[] 
[2475]
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[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu
la and data frame
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 []   \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs
parse)[] 
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 []   \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs
parse,[] 
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[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
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[]\T1/ptm/m/n/10 character string or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or 
(co-er-ca-ble to)
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[]\T1/pcr/m/n/10 "[][]sparseMatrix[][][]"[]\T1/ptm/m/n/10 , spec-i-fy-ing the c
on-trasts to be ap-plied to the
[2476]
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[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
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[]\T1/pcr/m/n/10 sparse.model.matrix []\T1/ptm/m/n/10 has been changed to []\T1
/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , 2010-07, for
Underfull \hbox (badness 1668) in paragraph at lines 10634--10639
[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
[2477]
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0, 0),[] 
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop=FALSE),"CsparseMatrix"), dim(M)
 == c(3, 0),[] 
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f12, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0,12),[] 
[2478]
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 []\T1/pcr/m/n/9 stopifnot(all.equal(pA, pLU, tolerance = 1e-12)) # (incl. perm
uted row- and column-names)[] 
[2479]
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[]\T1/ptm/m/n/10 This in-ter-face is rec-om-mended over di-rect con-struc-tion 
via calls such as
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 []             \T1/pcr/m/n/10 symmetric = FALSE, triangular = FALSE, index1 = 
TRUE,[] 
[2480]
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\T1/ptm/m/n/10 of the sparse ma-trix re-sult, i.e., spec-i-fy-ing one of the vi
r-tual classes
[2481]
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[]\T1/ptm/m/n/10 The stan-dard \T1/phv/m/n/10 R [][][]\T1/pcr/m/n/10 xtabs[][][
](*, sparse=TRUE)[]\T1/ptm/m/n/10 , for sparse ta-bles and
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 []\T1/pcr/m/n/9 (A <- sparseMatrix(i, j, x = x))                    ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
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 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
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 []\T1/pcr/m/n/9 (AA <- sparseMatrix(c(1,3:8), c(2,9,6:10), x = 7 * (1:7), dims
 = c(10,20)))[] 
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 []\T1/pcr/m/n/9 ## i, j and x can be in an arbitrary order, as long as they ar
e consistent[] 
[2482]
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 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted
 if necessary:[] 
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 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 
1:6, dimnames = dn)[] 
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 []\T1/pcr/m/n/9 ## pointers example in converting from other sparse matrix rep
resentations.[] 
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 []   \T1/pcr/m/n/9 nzchar(dfil <- system.file("extdata", "rua_32_ax.rua", pack
age = "SparseM"))) {[] 
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 []  \T1/pcr/m/n/9 XX <- sparseMatrix(j = X@ja, p = X@ia - 1L, x = X@ra, dims =
 X@dimension)[] 
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[]\T1/pcr/m/n/10 (x = "sparseMatrix", logarithm=TRUE)[]\T1/ptm/m/n/10 : [][][]\
T1/pcr/m/n/10 determinant[][][]() []\T1/ptm/m/n/10 meth-ods
[2484]
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[][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/10 , and its ref-er-ences,
 such as [][][]\T1/pcr/m/n/10 xtabs[][][](*, sparse=TRUE)[]\T1/ptm/m/n/10 , or
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr.Q}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11282 \aliasA{qr.Q}{sparseQR-class}{qr.Q}
                                            [2485] [2486]
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[]\T1/pcr/m/n/10 signature(a = "sparseQR", b = "ANY")[]\T1/ptm/m/n/10 : For []\
T1/pcr/m/n/10 solve(a,b)[]\T1/ptm/m/n/10 , sim-ply uses
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 [] \T1/pcr/m/n/9 qc  <- qr.coef  (qrm, y); qc. <- qr.coef  (qrm, y.) # 2nd fai
led in Matrix <= 1.1-0[] 
[2487]
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[]\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case
 a
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[]\T1/ptm/m/n/10 Sparse Vec-tor Classes: The vir-tual mother class []\T1/pcr/m/
n/10 "sparseVector" []\T1/ptm/m/n/10 has the five ac-
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\T1/ptm/m/n/10 tual daugh-ter classes []\T1/pcr/m/n/10 "dsparseVector"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "isparseVector"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "
lsparseVector"[]\T1/ptm/m/n/10 ,
[2488]
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[]\T1/pcr/m/n/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m/
n/10 co-erces sparse
[2489]
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[]\T1/pcr/m/n/10 (x = "nsparseVector")[]\T1/ptm/m/n/10 : re-turn [][][]\T1/pcr/
m/n/10 logical[][][] []\T1/ptm/m/n/10 or
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[][][]\T1/pcr/m/n/10 sparseVector[][][]() []\T1/ptm/m/n/10 for friendly con-str
uc-tion of sparse vec-tors (apart from []\T1/pcr/m/n/10 as(*,
[2490] [2491]
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[][][]\T1/pcr/m/n/10 Matrix[][][](*, sparse=TRUE) []\T1/ptm/m/n/10 for the more
 usual con-struc-tor of such ma-tri-ces. Then,
[2492] [2493]
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\T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 triangularMatrix[][][][]\T1/ptm/m/n
/10 , and, e.g., [][][]\T1/pcr/m/n/10 dsyMatrix[][][] []\T1/ptm/m/n/10 for nu-m
eric \T1/ptm/m/it/10 dense \T1/ptm/m/n/10 ma-tri-ces, or
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[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
[2494] [2495]
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[]\T1/ptm/m/n/10 Currently, [][][]\T1/pcr/m/n/10 Schur[][][][]\T1/ptm/m/n/10 , 
[][][]\T1/pcr/m/n/10 isSymmetric[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 as
() []\T1/ptm/m/n/10 (i.e. [][][]\T1/pcr/m/n/10 coerce[][][][]\T1/ptm/m/n/10 ) h
ave meth-ods with
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 "TsparseMatrix" []\T1/ptm/m/n/10 class is
 the vir-tual class of all sparse ma-tri-ces coded in
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\T1/ptm/m/n/10 triplet form. Since it is a vir-tual class, no ob-jects may be c
re-ated from it. See
[2496] [2497]
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[]\T1/ptm/m/n/10 a sparse ma-trix stored in triplet form, i.e., in-her-it-ing f
rom class
[2498] [2499]
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[]\T1/ptm/m/n/10 typically a []\T1/pcr/m/n/10 "packedMatrix"[]\T1/ptm/m/n/10 , 
though
[2500]
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[][][]\T1/pcr/m/n/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 unpac
k[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/pcr/m/n/10 "[][]pac
kedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes
[2501]
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[]\T1/ptm/m/n/10 any \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject, co-er-ca-ble to a
 sparse ma-trix (i.e., of sub-class of
[2502]
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 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted
 if necessary:[] 
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 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 
1:6, dimnames = dn)[] 
[2503] [2504]
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 []   \T1/pcr/m/n/9 sapply(rho, function(x) c(2* determinant(update(C1, nWC, 1/
x))$modulus))[] 
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 []   \T1/pcr/m/n/9 sapply(rho, function(x) c(2* determinant(update(C2, nWC, 1/
x))$modulus))[] 
[2505]
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[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2506]
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12987.
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12987.
[2507]
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 []\T1/pcr/m/n/9 L. <- L; L.[1:2,1] <- TRUE; L.@x[1:2] <- FALSE; L. # has "zero
s" to drop0()[] 
[2508]) (./boot-pkg.tex
Chapter 18.
[2509] [2510] [2511] [2512] [2513] [2514] [2515]
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 []\T1/pcr/m/n/10 boot(data, statistic, R, sim = "ordinary", stype = c("i", "f"
, "w"), 
[2516]
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[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sim-u-la-tion r
e-quired. Pos-si-ble
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor or fac-tor spec-i-fy-ing the strata for m
ulti-sample prob-
[2517] [2518] [2519]
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[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 6493) in paragraph at lines 853--857
[][][]\T1/pcr/m/n/10 boot.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bo
ot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 censboot[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 empinf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 j
ack.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 tilt.boot[][][][]\T
1/ptm/m/n/10 ,
[2520]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 887--887
 []\T1/pcr/m/n/9 nuke.lm <- glm(log(cost) ~ date+log(cap)+ne+ct+log(cum.n)+pt, 
data = nuke)[] 
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[2522] [2523]
Underfull \hbox (badness 1496) in paragraph at lines 1084--1093
[]\T1/ptm/m/n/10 If sup-plied, a value to be used as an es-ti-mate of the vari-
ance of the
Underfull \hbox (badness 2005) in paragraph at lines 1084--1093
\T1/ptm/m/n/10 statis-tic for the nor-mal ap-prox-i-ma-tion and stu-den-tized i
n-ter-vals. If it
Underfull \hbox (badness 2343) in paragraph at lines 1084--1093
\T1/ptm/m/n/10 is not sup-plied and []\T1/pcr/m/n/10 length(index) []\T1/ptm/m/
n/10 is 2 then []\T1/pcr/m/n/10 var.t0 []\T1/ptm/m/n/10 de-faults to
Underfull \hbox (badness 2150) in paragraph at lines 1105--1111
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2524] [2525] [2526] [2527]
Underfull \hbox (badness 1571) in paragraph at lines 1445--1447
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2528] [2529] [2530] [2531] [2532]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1738--1738
 []\T1/pcr/m/n/10 censboot(data, statistic, R, F.surv, G.surv, strata = matrix(
1,n,2), 
[2533] [2534] [2535]
Underfull \vbox (badness 10000) has occurred while \output is active [2536]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 2013--2013
 []\T1/pcr/m/n/9 mel.cox <- coxph(Surv(time, status == 1) ~ ns(thickness, df=4)
 + strata(ulcer),[] 
[2537]
Underfull \hbox (badness 6268) in paragraph at lines 2084--2086
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2538] [2539] [2540]
Underfull \hbox (badness 1565) in paragraph at lines 2338--2343
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2541]
Underfull \hbox (badness 4595) in paragraph at lines 2363--2368
\T1/ptm/m/n/10 are passed un-changed ev-ery time []\T1/pcr/m/n/10 boot.out$stat
istic []\T1/ptm/m/n/10 is called.
Underfull \hbox (badness 1881) in paragraph at lines 2432--2434
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 2057) in paragraph at lines 2440--2441
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 empinf[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 k3.linear[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 linear.approx[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
saddle.distn[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.spline[][][][]
\T1/ptm/m/n/10 ,
[2542] [2543]
Underfull \hbox (badness 1077) in paragraph at lines 2536--2540
[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/pcr/m
/n/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 n []\T1/ptm/m/n/1
0 is the sam-ple
Underfull \hbox (badness 1112) in paragraph at lines 2536--2540
\T1/ptm/m/n/10 size, if []\T1/pcr/m/n/10 unbiased []\T1/ptm/m/n/10 is []\T1/pcr
/m/n/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/pcr/m/n/10 1/n []\T
1/ptm/m/n/10 is used. This is mul-ti-plied by
[2544] [2545] [2546] [2547] [2548]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2895--2895
 []\T1/pcr/m/n/10 EEF.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t 
= 25, 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2897--2897
 []\T1/pcr/m/n/10 EL.profile(y, tmin  =  min(y) + 0.1, tmax = max(y) - 0.1, n.t
  =  25,[] 
[2549] [2550] [2551]
Underfull \hbox (badness 3861) in paragraph at lines 3105--3108
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.arr
ay[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.ci[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 control[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 jack
.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 linear.approx[][][][]\
T1/ptm/m/n/10 ,
[2552]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 3158--3158
 []\T1/pcr/m/n/10 envelope(boot.out = NULL, mat = NULL, level = 0.95, index = 1
:ncol(mat)) 
[2553] [2554] [2555]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3378--3378
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
[2556] [2557] [2558] [2559] [2560] [2561] [2562]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3838--3838
 []             \T1/pcr/m/n/10 t = boot.out$t[, index], w = NULL, def = TRUE, q
 = NULL)[] 
[2563] [2564]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3977--3977
 []\T1/pcr/m/n/9 grav.p <- imp.prob(grav.tilt.boot, w = grav.w, index = 3, t0 =
 grav.z0[3])[] 
[2565] [2566] [2567] [2568]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4259--4259
 []\T1/pcr/m/n/9 #  To draw the jackknife-after-bootstrap plot for the head siz
e data as in 
[2569] [2570]
Underfull \hbox (badness 10000) in paragraph at lines 4362--4364
[]\T1/ptm/m/n/10 The in-dex of the vari-able of in-ter-est within the out-put o
f
Underfull \hbox (badness 1430) in paragraph at lines 4371--4375
\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is sup-plied but nei-the
r []\T1/pcr/m/n/10 t []\T1/ptm/m/n/10 nor []\T1/pcr/m/n/10 L []\T1/ptm/m/n/10 a
re sup-plied then []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is set to
[2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579]
Underfull \hbox (badness 3000) in paragraph at lines 4959--4962
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2580] [2581] [2582] [2583]
Underfull \hbox (badness 2293) in paragraph at lines 5238--5241
[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5238--5241
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2584]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5317--5317
 []\T1/pcr/m/n/9 grav.boot <- boot(grav1, grav.fun, R = 499, stype = "w", strat
a = grav1[, 2])[] 
[2585] [2586] [2587] [2588] [2589] [2590] [2591] [2592]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5866--5866
 []\T1/pcr/m/n/9 city.sp1$spa[1] <- jacobian(city, 1.25, city.sp1$zeta.hat) * c
ity.sp1$spa[1][] 
[2593]
Underfull \hbox (badness 1127) in paragraph at lines 5988--6006
[]\T1/ptm/m/n/10 etc. un-til a point is found with a cdf ap-prox-i-ma-tion less
 than []\T1/pcr/m/n/10 min(alpha)/10[]\T1/ptm/m/n/10 , then
[2594]
Underfull \hbox (badness 2837) in paragraph at lines 6021--6024
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/pcr/m/n/10 "s
addle.distn"[]\T1/ptm/m/n/10 . See the help file for
[2595] [2596] [2597] [2598]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6306--6306
 []\T1/pcr/m/n/9 # This example is taken from Exercise 7.5 of Gill, Murray and 
Wright (1991). 
[2599] [2600]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6495--6495
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6497--6497
 []\T1/pcr/m/n/9 # value of the test statistic 1.84.  In the book exponential t
ilting was used[] 
[2601] [2602] [2603]
Underfull \hbox (badness 1596) in paragraph at lines 6742--6746
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2604] [2605]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6902--6902
 []                        \T1/pcr/m/n/9 stype = "i", sim = "balanced", alpha =
 c(0.05, 0.95),[] 
[2606] [2607] [2608] [2609] [2610] [2611] [2612] [2613]) (./class-pkg.tex
[2614]
Chapter 19.
[2615] [2616] [2617] [2618] [2619] [2620] [2621] [2622] [2623] [2624] [2625]
[2626] [2627] [2628] [2629] [2630]) (./cluster-pkg.tex
Chapter 20.
[2631] [2632] [2633]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 253--253
 []  \T1/pcr/m/n/9 all.equal(a.wgt [iC], agnes(d.vr, method="flexible", par.met
hod = 0.5)[iC])   ,[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 254--254
 []  \T1/pcr/m/n/9 all.equal(a.sing[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, -.5))[iC]),[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 255--255
 []  \T1/pcr/m/n/9 all.equal(a.comp[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, +.5))[iC]))[] 
[2634] [2635]
Underfull \vbox (badness 10000) has occurred while \output is active [2636]
[2637]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 519--519
 []           \T1/pcr/m/n/10 col = c(2, 0), border = 0, axes = TRUE, frame.plot
 = axes,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 523--523
 []           \T1/pcr/m/n/10 yaxRight = fromLeft, y.mar = 2.4 + max.strlen/2.5,
 ...)[] 
[2638] [2639]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 638--638
 []      \T1/pcr/m/n/10 keep.data = medoids.x, rngR = FALSE, pamLike = FALSE, c
orrect.d = TRUE)[] 
[2640]
Underfull \hbox (badness 3078) in paragraph at lines 691--694
[]\T1/ptm/m/n/10 Setting this to []\T1/pcr/m/n/10 FALSE []\T1/ptm/m/n/10 saves 
mem-ory (and hence time), but dis-ables
[2641] [2642]
Underfull \hbox (badness 2941) in paragraph at lines 791--794
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 clara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\
T1/ptm/m/n/10 ,
[2643]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 834--834
 []\T1/pcr/m/n/9 ## those that are not always in same cluster (5 out of 3000 fo
r this seed):[] 
Underfull \hbox (badness 10000) in paragraph at lines 881--883
[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2644]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 946--946
 []     \T1/pcr/m/n/10 arrowArgs = list(col="red3", length=1/16, angle=90, code
=3), ...)[] 
[2645]
Underfull \hbox (badness 4872) in paragraph at lines 992--994
[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
Underfull \hbox (badness 1342) in paragraph at lines 1006--1010
[]\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in
 2012,
[2646] [2647]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1121--1121
 []        \T1/pcr/m/n/9 sapply(mets, function(M) maxSE(fk, sk, method = M, SE.
factor = SEf)))[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1138--1138
 []\T1/pcr/m/n/9 ## You can manually set it before running this :    doExtras <
- TRUE  # or  FALSE[] 
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 1176--1176
 []\T1/pcr/m/n/9 plot(gsP.Z, main = "clusGap(<iid_rnorm_p=3>)  ==> k = 1  clust
er is optimal")[] 
Underfull \hbox (badness 4144) in paragraph at lines 1208--1212
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 nor a []\T1/pcr/m/n/10 data []\T1/ptm/m/n/10 
com-po-nent, e.g., for
[2649]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1284--1284
 []          \T1/pcr/m/n/10 col.clus = if(color) c(2, 4, 6, 3) else 5, cex = 1,
 cex.txt = cex,[] 
Overfull \hbox (72.78088pt too wide) in paragraph at lines 1290--1290
 []             \T1/pcr/m/n/10 round(100 * var.dec, digits = 2), "% of the poin
t variability."),[] 
[2650] [2651] [2652]
Underfull \hbox (badness 10000) in paragraph at lines 1477--1480
Underfull \hbox (badness 10000) in paragraph at lines 1494--1498
[][][]\T1/pcr/m/n/10 princomp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cmds
cale[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 daisy[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cov.mve[][][
][]\T1/ptm/m/n/10 ,
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1518--1518
 []\T1/pcr/m/n/9 clusplot(pamv, col.p = votes.clus, labels = 4)# color points a
nd label ellipses[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1528--1528
 []  \T1/pcr/m/n/9 clusplot(votes.diss, votes.clus, diss = TRUE, labels = 5)# i
dent. only points[] 
[2653]
Underfull \hbox (badness 5741) in paragraph at lines 1568--1571
[]\T1/pcr/m/n/10 coefHier() []\T1/ptm/m/n/10 di-rectly in-ter-faces to the un-d
er-ly-ing C code, and ``proves'' that \T1/ptm/m/it/10 only
[2654]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1637--1637
 []      \T1/pcr/m/n/10 warnBin = warnType, warnAsym = warnType, warnConst = wa
rnType,[] 
[2655]
Underfull \hbox (badness 1552) in paragraph at lines 1686--1688
[]\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/pcr/m/n
/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , se
e
Underfull \hbox (badness 1629) in paragraph at lines 1699--1703
[]\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault 
\T1/ptm/m/n/10 for all nu-meric
Underfull \hbox (badness 3746) in paragraph at lines 1699--1703
\T1/ptm/m/n/10 (incl []\T1/pcr/m/n/10 integer[]\T1/ptm/m/n/10 ) columns of []\T
1/pcr/m/n/10 x[]\T1/ptm/m/n/10 , aka []\T1/pcr/m/n/10 "I" []\T1/ptm/m/n/10 in r
e-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , see
[2656]
Underfull \hbox (badness 1540) in paragraph at lines 1775--1783
\T1/ptm/m/n/10 In other words, $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 is a weigh
ted mean of $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 with weights $\OML/cmm/m/it/1
0 w[]^^N[]$\T1/ptm/m/n/10 , where $\OML/cmm/m/it/10 w[]$[]\T1/pcr/m/n/10 =
[2657]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1867--1867
 []\T1/pcr/m/n/9 summary(dfl2 <- daisy(flower, type = list(asymm = c(1, 3), ord
ratio = 7)))[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 1886--1886
 []\T1/pcr/m/n/10 diana(x, diss = inherits(x, "dist"), metric = "euclidean", st
and = FALSE, 
[2658] [2659] [2660] [2661] [2662]
Underfull \hbox (badness 10000) in paragraph at lines 2207--2210
Underfull \hbox (badness 3179) in paragraph at lines 2221--2227
[][][]\T1/pcr/m/n/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also the
 [][][]\T1/pcr/m/n/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/pcr/m/n/1
0 ellipsoid []\T1/ptm/m/n/10 ob-jects.
[2663] [2664]
Underfull \hbox (badness 10000) in paragraph at lines 2379--2382
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 fanny.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2665]
Underfull \hbox (badness 1292) in paragraph at lines 2447--2450
[]\T1/ptm/m/n/10 named vec-tor with []\T1/pcr/m/n/10 iterations[]\T1/ptm/m/n/10
 , the num-ber of it-er-a-tions needed and
[2666]
Underfull \hbox (badness 6675) in paragraph at lines 2456--2458
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
Underfull \hbox (badness 10000) in paragraph at lines 2479--2482
[][][]\T1/pcr/m/n/10 fanny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.f
anny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dissimilarity.object[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2667] [2668]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 2608--2608
 []\T1/pcr/m/n/10 medoids(x, clustering, diss = inherits(x, "dist"), USE.NAMES 
= FALSE, ...) 
[2669]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 2655--2655
 []  \T1/pcr/m/n/9 stopifnot(length(cl.k) == nrow(votes.repub), 1 <= cl.k, cl.k
 <= k, table(cl.k) >= 2)[] 
[2670]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2760--2760
 []\T1/pcr/m/n/9 ## One place to see if/how error messages are *translated* (to
 \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 de\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 / \TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 pl\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ):[] 
[2671]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 2839--2839
 []    \T1/pcr/m/n/10 variant = c("original", "o_1", "o_2", "f_3", "f_4", "f_5"
, "faster"),[] 
[2672] [2673] [2674]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3068--3068
 []\T1/pcr/m/n/9 ## no _build_ *and* no _swap_ phase: just cluster all obs. aro
und (1, 16):[] 
[2675] [2676]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3171--3171
 []\T1/pcr/m/n/9 axis(1, k.best, paste("best",k.best,sep="\n"), col = "red", co
l.axis = "red")[] 
[2677] [2678] [2679]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 3367--3367
 []           \T1/pcr/m/n/10 sub = paste("Agglomerative Coefficient = ",round(x
$ac, digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3368--3368
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2680]
Underfull \hbox (badness 10000) in paragraph at lines 3435--3438
[]\T1/ptm/m/n/10 For the den-dro-gram, more flex-i-bil-ity than via []\T1/pcr/m
/n/10 pltree() []\T1/ptm/m/n/10 is pro-vided by []\T1/pcr/m/n/10 dg <-
[2681]
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 []           \T1/pcr/m/n/10 sub = paste("Divisive Coefficient = ", round(x$dc,
 digits = 2)),[] 
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 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2682] [2683] [2684]
Underfull \hbox (badness 10000) in paragraph at lines 3671--3674
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 com-po-nent as for [][][]\T1/pcr/m/n/10 pam[]
[][](*,
Underfull \hbox (badness 1448) in paragraph at lines 3671--3674
\T1/pcr/m/n/10 keep.diss=FALSE)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dist []\T1/p
tm/m/n/10 must be the dis-sim-i-lar-ity if a clus-plot is
[2685]
Underfull \hbox (badness 10000) in paragraph at lines 3734--3739
[][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 clusplot.de
fault[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 ,
[2686]
Underfull \hbox (badness 1748) in paragraph at lines 3796--3801
\T1/ptm/m/n/10 dis-patches to [][][]\T1/pcr/m/n/10 plot.hclust[][][](..)[]\T1/p
tm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/pcr/m/n/10 xx 
<-
Underfull \hbox (badness 6268) in paragraph at lines 3808--3811
[][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 agnes.o
bject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 diana.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/1
0 hclust[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 plot.agnes[][][][]\T1/ptm/m/n/10 ,
[2687] [2688] [2689]
Underfull \hbox (badness 10000) in paragraph at lines 3993--3996
[][][]\T1/pcr/m/n/10 summary.agnes[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ag
nes.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4024--4027
[][][]\T1/pcr/m/n/10 summary.clara[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cl
ara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
[2690]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 4077--4077
 []      \T1/pcr/m/n/10 digits = getOption("digits"), justify = "none", right =
 TRUE, ...)[] 
[2691]
Underfull \hbox (badness 2035) in paragraph at lines 4088--4090
[]\T1/ptm/m/n/10 a []\T1/pcr/m/n/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a
 []\T1/pcr/m/n/10 summary.dissimilarity []\T1/ptm/m/n/10 one for
[2692] [2693] [2694]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 4281--4281
 []     \T1/pcr/m/n/10 main = NULL, sub = NULL, xlab = expression("Silhouette w
idth "* s[i]),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 4283--4283
 []     \T1/pcr/m/n/10 cex.names = par("cex.axis"), do.n.k = TRUE, do.clus.stat
 = TRUE, ...)[] 
[2695] [2696]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 4426--4426
 []\T1/pcr/m/n/9 plot(si, col = c("red", "green", "blue", "purple"))# with clus
ter-wise coloring[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4435--4435
 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4437--4437
 []      \T1/pcr/m/n/9 outer = TRUE, font = par("font.main"), cex = par("cex.ma
in")); frame()[] 
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 []\T1/pcr/m/n/9 c6 <- c("tomato", "forest green", "dark blue", "purple2", "gol
denrod4", "gray20")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4442--4442
 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE,[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 4449--4449
 []\T1/pcr/m/n/9 str(xc1k <- xclara[ sample(nrow(xclara), size = 1000) ,]) # ro
wnames == indices[] 
[2697] [2698] [2699] [2700] [2701] [2702] [2703]
Underfull \hbox (badness 10000) in paragraph at lines 4823--4829
[]\T1/ptm/m/n/10 Our ver-sion of the []\T1/pcr/m/n/10 xclara []\T1/ptm/m/n/10 i
s slightly more rounded than the one from
Underfull \hbox (badness 10000) in paragraph at lines 4839--4841
[]\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file 
`\T1/pcr/m/n/10 xclara.dat\T1/ptm/m/n/10 ' in side
Overfull \hbox (52.98038pt too wide) in paragraph at lines 4852--4852
 []\T1/pcr/m/n/9 ## Visualization: Assuming groups are defined as {1:1000}, {10
01:2000}, {2001:3000} 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 4854--4854
 []\T1/pcr/m/n/9 p.ID <- c(78, 1411, 2535) ## PAM\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 
s medoid indices  == pam(xclara, 3)$id.med[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4864--4864
 [] \T1/pcr/m/n/9 ## We see 3 + 2 + 2 = 7  clear "outlier"s  or "wrong group" o
bservations:[] 
[2704]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 4868--4868
 [] \T1/pcr/m/n/9 ## Apart from these, what are the robust ranges of indices? -
- Robust range:[] 
[2705]) (./codetools-pkg.tex [2706]
Chapter 21.
Overfull \hbox (24.78088pt too wide) in paragraph at lines 16--16
 []           \T1/pcr/m/n/10 suppressParamUnused = !all, suppressFundefMismatch
 = FALSE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 17--17
 []           \T1/pcr/m/n/10 suppressLocalUnused = FALSE, suppressNoLocalFun = 
!all,[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 18--18
 []           \T1/pcr/m/n/10 skipWith = FALSE, suppressUndefined = dfltSuppress
Undefined,[] 
[2707]
Underfull \hbox (badness 10000) in paragraph at lines 65--70
[]\T1/pcr/m/n/10 checkUsageEnv []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 checkUsage
Package []\T1/ptm/m/n/10 are con-ve-nience func-tions that ap-ply
[2708]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 118--118
 []\T1/pcr/m/n/10 makeConstantFolder(..., leaf, handler, call, exit, isLocal, f
oldable,[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 121--121
 []\T1/pcr/m/n/10 makeUsageCollector(fun, ..., name, enterLocal, enterGlobal, e
nterInternal,[] 
[2709] [2710] [2711]) (./foreign-pkg.tex [2712]
Chapter 22.
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[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
Underfull \hbox (badness 10000) in paragraph at lines 33--37
\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][]$\T1/p
cr/m/n/10 https : / / support .
Underfull \hbox (badness 10000) in paragraph at lines 33--37
\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
Overfull \hbox (74.28088pt too wide) in paragraph at lines 33--37
\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2713]
Underfull \hbox (badness 1231) in paragraph at lines 67--70
[]\T1/ptm/m/n/10 a char-ac-ter string with the name of the ARFF file to read fr
om, or a
[2714] [2715]
Underfull \hbox (badness 3601) in paragraph at lines 237--245
[]\T1/ptm/m/n/10 A data frame with at-tributes. These will in-clude []\T1/pcr/m
/n/10 "datalabel"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "time.stamp"[]\T1/ptm/m/n/
10 ,
[2716]
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 []\T1/pcr/m/n/10 read.epiinfo(file, read.deleted = FALSE, guess.broken.dates =
 FALSE, 
[2717] [2718] [2719]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 461--461
 []          \T1/pcr/m/n/10 trim_values = TRUE, reencode = NA, use.missings = t
o.data.frame,[] 
[2720]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 462--462
 []          \T1/pcr/m/n/10 sub = ".", add.undeclared.levels = c("sort", "appen
d", "no"),[] 
Underfull \hbox (badness 2846) in paragraph at lines 505--514
[]\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif-
fer-ent lev-
Underfull \hbox (badness 3746) in paragraph at lines 505--514
\T1/ptm/m/n/10 els. For []\T1/pcr/m/n/10 "append" []\T1/ptm/m/n/10 (the de-faul
t), the first orig-i-nal value la-bel is
Underfull \hbox (badness 2269) in paragraph at lines 505--514
\T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/p
cr/m/n/10 paste0(label,
Underfull \hbox (badness 10000) in paragraph at lines 515--518
[]\T1/ptm/m/n/10 character: the in-fix used for la-bels of fac-tor lev-els with
 du-
Underfull \hbox (badness 10000) in paragraph at lines 515--518
\T1/ptm/m/n/10 pli-cated value la-bels in SPSS (de-fault []\T1/pcr/m/n/10 "_dup
licated_"[]\T1/ptm/m/n/10 ) if
[2721]
Underfull \hbox (badness 10000) in paragraph at lines 549--557
[]\T1/ptm/m/n/10 URL [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / 
en-[]us / windows / win32 / intl /
Underfull \hbox (badness 7613) in paragraph at lines 567--573
[]\T1/ptm/m/n/10 There may be at-tributes []\T1/pcr/m/n/10 "label.table" []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 "variable.labels"[]\T1/ptm/m/n/10 . At-tribute
[2722]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 622--622
 []\T1/pcr/m/n/9 ### hence may need some special treatment with appropriate arg
ument settings.[] 
Overfull \hbox (112.38031pt too wide) in paragraph at lines 623--623
 []\T1/pcr/m/n/9 ### Expect lots of warnings as value labels (corresponding to 
R factor labels) are uncomplete,[] 
[2723]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 656--656
 []\T1/pcr/m/n/9 ## Long Strings (>255 chars) are imported in consecutive separ
ate variables[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 660--660
 []\T1/pcr/m/n/9 cat.long.string <- function(x, w=70) cat(paste(strwrap(x, widt
h=w), "\n"))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 667--667
 []\T1/pcr/m/n/9 long.string <- apply(x[,c("string_500", "STRIN0")], 1, paste, 
collapse="")[] 
[2724] [2725]
Underfull \hbox (badness 10000) in paragraph at lines 811--812
Overfull \hbox (4.38043pt too wide) in paragraph at lines 821--821
 []\T1/pcr/m/n/9 iris.s <- read.systat(system.file("files/Iris.syd", package="f
oreign")[1])[] 
[2726]
Underfull \hbox (badness 10000) in paragraph at lines 868--872
[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
Underfull \hbox (badness 10000) in paragraph at lines 868--872
\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][]$\T1/p
cr/m/n/10 https : / / support .
Underfull \hbox (badness 10000) in paragraph at lines 868--872
\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
Overfull \hbox (74.28088pt too wide) in paragraph at lines 868--872
\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2727]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 899--899
 []  \T1/pcr/m/n/10 data.restore(file, print = FALSE, verbose = FALSE, env = .G
lobalEnv) 
[2728]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 963--963
 []\T1/pcr/m/n/10 write.arff(x, file, eol = "\n", relation = deparse(substitute
(x))) 
[2729] [2730]
Underfull \hbox (badness 10000) in paragraph at lines 1075--1076
[][][]$\T1/pcr/m/n/10 https : / / www . clicketyclick . dk / databases / xbase 
/ format / data _ types .
Overfull \hbox (24.78088pt too wide) in paragraph at lines 1111--1111
 []          \T1/pcr/m/n/10 convert.factors = c("labels", "string", "numeric", 
"codes"))[] 
[2731] [2732]
Underfull \hbox (badness 10000) in paragraph at lines 1268--1274
[]\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/pcr/m/n/10 foreig
n:::writeForeignStata[]\T1/ptm/m/n/10 ,
[2733]
Underfull \hbox (badness 2088) in paragraph at lines 1294--1297
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 package="SPSS"[]\T1/ptm/m/n/10 , as a sid
e ef-fect, the dec-i-mal in-di-ca-tor is al-ways set by []\T1/pcr/m/n/10 SET
[2734]) (./lattice-pkg.tex
Chapter 23.
[2735]
Underfull \hbox (badness 2073) in paragraph at lines 117--121
\T1/ptm/m/n/10 pro-vide a holis-tic in-tro-duc-tion to the Trel-lis paradigm: [
][]$\T1/pcr/m/n/10 http : / / web . archive . org /
Underfull \hbox (badness 10000) in paragraph at lines 117--121
\T1/pcr/m/n/10 web / 20081020164041 / http : / / cm . bell-[]labs . com / cm / 
ms / departments / sia /
[2736] [2737]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 286--286
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 290--290
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.xyplot"),[] 
[2738]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 298--298
 []        \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defaul
t.dotplot"),[] 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 305--305
 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.barchart"),[] 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 313--313
 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.stripplot"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 334--334
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 338--338
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.bwplot"),[] 
[2739] [2740] [2741] [2742]
Underfull \hbox (badness 1221) in paragraph at lines 652--655
[]\T1/ptm/m/n/10 A log-i-cal, or a list con-tain-ing com-po-nents to be used as
 ar-gu-ments to
[2743] [2744] [2745] [2746]
Underfull \hbox (badness 2005) in paragraph at lines 990--1002
[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the un-used lev-els of 
fac-tors will be
Underfull \hbox (badness 1199) in paragraph at lines 990--1002
\T1/ptm/m/n/10 some-times ap-pro-pri-ate to sup-press drop-ping to pre-serve a 
use-ful lay-out.
[2747]
Underfull \hbox (badness 1661) in paragraph at lines 1103--1109
[]\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 sho
uld be num-bers be-tween 0 and 1, giv-ing co-or-di-nates
[2748] [2749]
Underfull \hbox (badness 1097) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 Logical flag, whether leg-end should have a
Underfull \hbox (badness 1917) in paragraph at lines 1243--1244
[]\T1/ptm/m/n/10 Space be-tween col-umn blocks, in ad-di-tion to
[2750] [2751] [2752]
Underfull \hbox (badness 1540) in paragraph at lines 1483--1489
[]\T1/ptm/m/n/10 A list con-tain-ing pos-si-ble ar-gu-ments to [][][]\T1/pcr/m/
n/10 plot.trellis[][][][]\T1/ptm/m/n/10 ,
[2753]
Underfull \hbox (badness 10000) in paragraph at lines 1570--1587
[][][]\T1/pcr/m/n/10 panel.dotplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.superpose[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.loess[][][][]\T1/ptm/m/n/10 ,
[2754]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 1658--1658
 []                  \T1/pcr/m/n/9 text = list(lab = as.character(unique(Orchar
dSprays$rowpos))),[] 
[2755]
Underfull \hbox (badness 2012) in paragraph at lines 1712--1714
[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/pcr/m/n/10 xyplot[]
[][][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1742--1746
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
[2756]
Underfull \hbox (badness 10000) in paragraph at lines 1759--1762
[]\T1/ptm/m/n/10 style set-tings be-yond the stan-dard []\T1/pcr/m/n/10 col[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1
/ptm/m/n/10 , etc; see
Underfull \hbox (badness 10000) in paragraph at lines 1812--1814
[]\T1/ptm/m/n/10 Gabor Grothendieck, Achim Zeileis, Deep-ayan Sarkar and Fe-lix
 An-drews
[2757] [2758] [2759] [2760]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045
 []            \T1/pcr/m/n/10 auto.key = lattice.getOption("default.args")$auto
.key,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2058--2058
 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.densitypl
ot"),[] 
[2761]
Underfull \hbox (badness 10000) in paragraph at lines 2128--2131
[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fie
d, the value of
Underfull \hbox (badness 1320) in paragraph at lines 2128--2131
[]\T1/pcr/m/n/10 lattice.getOption("histogram.breaks") []\T1/ptm/m/n/10 is firs
t checked. If
[2762] [2763] [2764]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 2332--2332
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 2336--2336
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.qqmath"),[] 
[2765] [2766] [2767] [2768]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 2676--2676
 []          \T1/pcr/m/n/10 panel = if (useRaster) lattice.getOption("panel.lev
elplot.raster")[] 
[2769]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2708--2708
 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.contourpl
ot"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active [2770]
Underfull \hbox (badness 2913) in paragraph at lines 2778--2783
[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
Underfull \hbox (badness 3058) in paragraph at lines 2778--2783
[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
[2771] [2772]
Underfull \hbox (badness 6758) in paragraph at lines 2906--2910
[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the col-orkey should be
Underfull \hbox (badness 7576) in paragraph at lines 2906--2910
\T1/ptm/m/n/10 ren-dered as a raster im-age us-ing [][][]\T1/pcr/m/n/10 grid.ra
ster[][][][]\T1/ptm/m/n/10 . See also
Underfull \hbox (badness 10000) in paragraph at lines 2912--2914
[]\T1/ptm/m/n/10 Logical flag, passed to [][][]\T1/pcr/m/n/10 rasterGrob[][][] 
[]\T1/ptm/m/n/10 when
Underfull \hbox (badness 1609) in paragraph at lines 2964--2970
[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether raster rep-re-sen-ta-ti
ons should be used,
Underfull \hbox (badness 2772) in paragraph at lines 2964--2970
\T1/ptm/m/n/10 both for the false color im-age and the color key (if present). 
Ef-
Underfull \hbox (badness 1400) in paragraph at lines 2964--2970
\T1/ptm/m/n/10 fec-tively, set-ting this to []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n
/10 changes the de-fault panel func-tion from
Underfull \hbox (badness 2486) in paragraph at lines 2988--2992
[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2773] [2774]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3091--3091
 []      \T1/pcr/m/n/10 xlim = if (is.factor(x)) levels(x) else range(x, finite
 = TRUE),[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3092--3092
 []      \T1/pcr/m/n/10 ylim = if (is.factor(y)) levels(y) else range(y, finite
 = TRUE),[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3093--3093
 []      \T1/pcr/m/n/10 zlim = if (is.factor(z)) levels(z) else range(z, finite
 = TRUE),[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3104--3104
 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
cloud"),[] 
[2775]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 3116--3116
 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.wireframe"),[] 
Underfull \hbox (badness 2913) in paragraph at lines 3174--3181
[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
Underfull \hbox (badness 3058) in paragraph at lines 3174--3181
[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
[2776] [2777] [2778] [2779]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.parallel}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3462 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                 [2780]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3504--3504
 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
splom"),[] 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3527--3527
 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.parallel"),[] 
[2781] [2782] [2783] [2784] [2785]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3863--3863
 []\T1/pcr/m/n/10 oneway(formula, data, location=mean, spread=function(x) sqrt(
var(x))) 
[2786]
Underfull \hbox (badness 2277) in paragraph at lines 3949--3953
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings by
Underfull \hbox (badness 2435) in paragraph at lines 3949--3953
\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2787] [2788]
Overfull \hbox (120.78088pt too wide) in paragraph at lines 4046--4046
 []               \T1/pcr/m/n/10 symbol = palette.colors(palette = "Okabe-Ito")
[c(6, 2, 4, 7, 3, 5, 8)],[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 4048--4048
 []               \T1/pcr/m/n/10 region = hcl.colors(14, palette = "YlGnBu", re
v = TRUE),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 4055--4055
 []             \T1/pcr/m/n/10 reference = "gray90", bg = "transparent", fg = "
black",[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 4056--4056
 []             \T1/pcr/m/n/10 strip.bg = rep("gray95", 7), strip.fg = rep("gra
y70", 7),[] 
[2789] [2790]
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 []\T1/pcr/m/n/10 trellis.par.set(name, value, ..., theme, warn = TRUE, strict 
= FALSE) 
Underfull \hbox (badness 1173) in paragraph at lines 4208--4212
[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
Underfull \hbox (badness 3219) in paragraph at lines 4235--4237
[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
Underfull \hbox (badness 1728) in paragraph at lines 4252--4256
[]\T1/pcr/m/n/10 theme[]\T1/ptm/m/n/10 ). These are used to mod-ify the cur-ren
t set-tings (ob-tained by
[2791]
Underfull \hbox (badness 5161) in paragraph at lines 4317--4321
[]\T1/ptm/m/n/10 The ac-tual list of the com-po-nents in []\T1/pcr/m/n/10 trell
is.settings []\T1/ptm/m/n/10 has not been fi-nal-ized,
Underfull \hbox (badness 4913) in paragraph at lines 4317--4321
\T1/ptm/m/n/10 so I'm not at-tempt-ing to list them here. The cur-rent value ca
n be ob-tained by
[2792] [2793]
Underfull \hbox (badness 1067) in paragraph at lines 4435--4445
[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/pcr/m/n/10 col []\T1/ptm/m/n/
10 is used for com-po-nents []\T1/pcr/m/n/10 "plot.symbol"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4435--4445
[]\T1/pcr/m/n/10 "plot.line"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "plot.polygon"[
]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1735) in paragraph at lines 4435--4445
[]\T1/pcr/m/n/10 "superpose.line"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "super
pose.polygon"[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 col.points
Underfull \hbox (badness 10000) in paragraph at lines 4435--4445
[]\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , but is used 
only for []\T1/pcr/m/n/10 "plot.symbol" []\T1/ptm/m/n/10 and
Underfull \hbox (badness 5231) in paragraph at lines 4435--4445
[]\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 . Sim-i-larly, []\T1/pcr/m/
n/10 col.line []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col []\T1/ptm/m/n/10
 for
Underfull \hbox (badness 1701) in paragraph at lines 4460--4463
[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 pl
ot.symbol[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 plot.polygon[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4463--4465
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 
plot.polygon []\T1/ptm/m/n/10 and
[2794] [2795]
Underfull \hbox (badness 2932) in paragraph at lines 4606--4611
[]\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 aspect[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 between[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 grid[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 skip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 ,
[2796] [2797] [2798] [2799]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4882--4882
 []\T1/pcr/m/n/9 p12 <- densityplot( ~ height | voice.part, data = singer, xlab
 = "Height")[] 
[2800] [2801] [2802]
Underfull \hbox (badness 10000) in paragraph at lines 5069--5072
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 trellis[]\T1/ptm/m/n/10 ,
 by de-fault plot-ted by []\T1/pcr/m/n/10 print.trellis[]\T1/ptm/m/n/10 .
[2803]
Underfull \hbox (badness 1442) in paragraph at lines 5201--5204
[]\T1/pcr/m/n/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gle
s via rect-an-gles. []\T1/pcr/m/n/10 print.shingle []\T1/ptm/m/n/10 and
[2804] [2805] [2806] [2807] [2808] [2809]
Underfull \hbox (badness 3646) in paragraph at lines 5540--5543
[][][]\T1/pcr/m/n/10 Lattice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 draw.
key[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 trellis.par.get[][][][]\T1/ptm
/m/n/10 , and [][][]\T1/pcr/m/n/10 xyplot[][][][]\T1/ptm/m/n/10 , specif-i-call
y the en-try for
Overfull \hbox (36.78088pt too wide) in paragraph at lines 5570--5570
 []              \T1/pcr/m/n/10 bg = trellis.par.get("strip.background")$col[wh
ich.given],[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 5571--5571
 []              \T1/pcr/m/n/10 fg = trellis.par.get("strip.shingle")$col[which
.given],[] 
[2810]
Underfull \hbox (badness 10000) in paragraph at lines 5659--5662
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 2103) in paragraph at lines 5659--5662
[]\T1/pcr/m/n/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on the
 left of pan-els us-ing
[2811]
Underfull \hbox (badness 1635) in paragraph at lines 5685--5690
[]\T1/pcr/m/n/10 strip.default []\T1/ptm/m/n/10 is called for its side-effect, 
which is to draw a strip ap-pro-pri-ate for
[2812]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5836--5836
 []\T1/pcr/m/n/10 panel.identify.qqmath(x, distribution, groups, subscripts, la
bels,[] 
[2813]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 5850--5850
 []\T1/pcr/m/n/10 panel.link.splom(threshold = 18, verbose = getOption("verbose
"), ...)[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 5851--5851
 []\T1/pcr/m/n/10 panel.brush.splom(threshold = 18, verbose = getOption("verbos
e"), ...)[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 5854--5854
 []\T1/pcr/m/n/10 trellis.vpname(name = c("position", "split", "split.location"
, "toplevel",[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 5857--5857
 []                        \T1/pcr/m/n/10 "xlab", "ylab", "xlab.top", "ylab.rig
ht", "page"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 5859--5859
 []               \T1/pcr/m/n/10 side = c("left", "top", "right", "bottom", "in
side"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5865--5865
 []                 \T1/pcr/m/n/10 which.given = lattice.getStatus("current.whi
ch.given",[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5866--5866
 []                                                 \T1/pcr/m/n/10 prefix = pre
fix),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5867--5867
 []                 \T1/pcr/m/n/10 which.panel = lattice.getStatus("current.whi
ch.panel",[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5868--5868
 []                                                 \T1/pcr/m/n/10 prefix = pre
fix),[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 5869--5869
 []                 \T1/pcr/m/n/10 column = lattice.getStatus("current.focus.co
lumn",[] 
Underfull \hbox (badness 10000) in paragraph at lines 5885--5887
[]\T1/ptm/m/n/10 variables defin-ing the con-tents of the panel. In the case of
Underfull \hbox (badness 2376) in paragraph at lines 5896--5898
[]\T1/ptm/m/n/10 an op-tional vec-tor of la-bels as-so-ci-ated with each point.
 De-faults to
[2814] [2815]
Underfull \hbox (badness 2538) in paragraph at lines 6021--6025
\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 trellis.focus[]\T1/ptm/m/n/10 , the de-faul
t is []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 in in-ter-ac-tive mode, and
Underfull \hbox (badness 4205) in paragraph at lines 6032--6039
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , e
x-tra pa-ram-e-ters are passed on to
Underfull \hbox (badness 4792) in paragraph at lines 6032--6039
[]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 trellis.switchFocus[]\T1/ptm/m/n/10 , the
se are used (in com-bi-na-tion with
[2816] [2817]
Underfull \hbox (badness 10000) in paragraph at lines 6185--6189
[][][]\T1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Latt
ice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.trellis[][][][]\T1/ptm/m
/n/10 , [][][]\T1/pcr/m/n/10 trellis.currentLayout[][][][]\T1/ptm/m/n/10 ,
[2818] [2819]
Underfull \hbox (badness 4242) in paragraph at lines 6332--6337
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
[2820] [2821]
Underfull \hbox (badness 3601) in paragraph at lines 6448--6453
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/pcr/m/n/10 x []\T1/ptm/m
/n/10 for ev-ery level of []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 (or the other way
 round
Underfull \hbox (badness 2486) in paragraph at lines 6448--6453
\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 horizontal=FALSE[]\T1/ptm/m/n/10 ). By de-fa
ult, the ac-tual box-plot statis-tics are cal-cu-lated us-ing
[2822]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 6536--6536
 []             \T1/pcr/m/n/10 shade.colors.palette = trellis.par.get("shade.co
lors")$palette,[] 
[2823] [2824] [2825]
Underfull \hbox (badness 10000) in paragraph at lines 6735--6739
[]\T1/ptm/m/n/10 All three num-bers should be be-tween 0 and 1. The
Underfull \hbox (badness 10000) in paragraph at lines 6740--6742
[]\T1/ptm/m/n/10 numeric, be-tween 0 and 1, giv-ing a min-i-mum sat-u-ra-tion i
n
[2826]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6836--6836
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Inferno"),[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 6839--6839
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Dark Mint"),[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6842--6842
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Harmonic"),[] 
[2827] [2828] [2829] [2830] [2831] [2832]
Underfull \hbox (badness 1320) in paragraph at lines 7204--7211
[]\T1/pcr/m/n/10 panel.levelplot.raster []\T1/ptm/m/n/10 is an al-ter-na-tive p
anel func-tion that uses the raster draw-
Underfull \hbox (badness 1715) in paragraph at lines 7204--7211
\T1/ptm/m/n/10 can only ren-der data on an eq-ui-s-paced grid), but can be more
 ef-fi-cient. When us-ing
[2833]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 7279--7279
 []                 \T1/pcr/m/n/10 varname = NULL, limits, at = NULL, labels = 
NULL,[] 
[2834]
Underfull \hbox (badness 10000) in paragraph at lines 7309--7313
[]\T1/ptm/m/n/10 The panel func-tion used for the di-ag-o-nals. See ar-gu-ments
 to
Underfull \hbox (badness 1584) in paragraph at lines 7309--7313
[]\T1/pcr/m/n/10 diag.panel.splom []\T1/ptm/m/n/10 to know what ar-gu-ments thi
s func-tion is passed
[2835]
Underfull \hbox (badness 10000) in paragraph at lines 7414--7417
\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 diag.panel []\T1/ptm/m/n/10 from []\T1/pcr/
m/n/10 panel.pairs[]\T1/ptm/m/n/10 . Cur-rently ig-nored by
Overfull \hbox (101.58032pt too wide) in paragraph at lines 7439--7439
 []              \T1/pcr/m/n/9 function(i,j) hcl.colors(11)[i+j-1]) ## rainbow(
11, start=.12, end=.5)[i+j-1])[] 
[2836] [2837]
Underfull \hbox (badness 2012) in paragraph at lines 7580--7583
[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2838]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7626--7626
 []                  \T1/pcr/m/n/9 panel.qqmath(..., f.value = ppoints(100), ta
ils.n = 50))[] 
[2839] [2840] [2841]
Underfull \hbox (badness 1939) in paragraph at lines 7815--7823
[]\T1/pcr/m/n/10 "lm" []\T1/ptm/m/n/10 adds a lin-ear re-gres-sion line (same a
s [][][]\T1/pcr/m/n/10 panel.lmline[][][][]\T1/ptm/m/n/10 , ex-cept
Underfull \hbox (badness 1163) in paragraph at lines 7815--7823
\T1/ptm/m/n/10 for de-fault graph-i-cal pa-ram-e-ters). []\T1/pcr/m/n/10 "loess
" []\T1/ptm/m/n/10 adds a loess fit (same as
Underfull \hbox (badness 2772) in paragraph at lines 7838--7841
[]\T1/ptm/m/n/10 Most gen-er-ally, []\T1/pcr/m/n/10 grid []\T1/ptm/m/n/10 can b
e a list of ar-gu-ments to be sup-plied to
[2842]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 7909--7909
 []       \T1/pcr/m/n/9 ylab = list(c("horizontal=TRUE", "horizontal=FALSE"), y
 = c(1/6, 4/6)),[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7919--7919
 []       \T1/pcr/m/n/9 scales = list(alternating = c(0, 2), tck = c(0, 0.7), d
raw = FALSE),[] 
[2843]
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 []        \T1/pcr/m/n/10 font, fontfamily, fontface, cex, ..., identifier, nam
e.type)[] 
Overfull \hbox (72.78088pt too wide) in paragraph at lines 7985--7985
 []      \T1/pcr/m/n/10 adj = c(0.5, 0.5), pos = NULL, offset = 0.5, ..., ident
ifier, name.type)[] 
[2844] [2845] [2846]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 8170--8170
 []\T1/pcr/m/n/10 panel.grid(h=3, v=3, col, col.line, lty, lwd, x, y, ..., iden
tifier = "grid")[] 
[2847]
Underfull \hbox (badness 1436) in paragraph at lines 8225--8231
[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
[2848]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 8355--8355
 []           \T1/pcr/m/n/9 panel.superpose(x, y, ..., panel.groups = panel.ave
rage, grid = FALSE,[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 8369--8369
 []                                \T1/pcr/m/n/9 args = list(mean = mean(x), sd
 = sd(x)), ...)[] 
[2849] [2850] [2851] [2852] [2853] [2854] [2855]
Underfull \hbox (badness 10000) in paragraph at lines 8794--8797
[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/pcr/m/n/10 panel.super
pose
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[]\T1/ptm/m/n/10 from []\T1/pcr/m/n/10 panel.superpose.2[]\T1/ptm/m/n/10 , and 
to []\T1/pcr/m/n/10 panel.groups []\T1/ptm/m/n/10 from
[2856] [2857]
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 []\T1/pcr/m/n/10 prepanel.default.bwplot(x, y, horizontal, nlevels, origin, st
ack, ...)[] 
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 []\T1/pcr/m/n/10 prepanel.default.histogram(x, breaks, equal.widths, type, nin
t, ...)[] 
[2858]
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 []\T1/pcr/m/n/10 prepanel.default.densityplot(x, darg, groups, weights, subscr
ipts, ...)[] 
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[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/pcr/m/n/10 type [
]\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2859]
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[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2860] [2861]
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[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
[2862]
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 []                \T1/pcr/m/n/9 ans$bottom$labels$labels <- parse(text = ans$b
ottom$labels$labels)[] 
[2863] [2864]
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 []\T1/pcr/m/n/9 xyplot(sunspot.year ~ time(sunspot.year) | equal.count(time(su
nspot.year)),[] 
[2865]
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\T1/pcr/m/n/10 condition []\T1/ptm/m/n/10 for 2-D, and []\T1/pcr/m/n/10 left, r
ight.x, right.y, left.name, right.x.name,
[2866] [2867] [2868] [2869] [2870] [2871] [2872]
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[]\T1/ptm/m/n/10 Factor with lev-els []\T1/pcr/m/n/10 "Svansota"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Manchuria"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 475"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "Velvet"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Peatland"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Glabron"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 4
57"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Wisconsin No. 38"[]\T1/ptm/m/n/10 ,
[2873] [2874] [2875]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.melanoma}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10186 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                 [2876] [2877] [2878]
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\T1/pcr/m/n/10 diseases[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Diabetes[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 Flu and pneumonia[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 He
art disease[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Lower
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 []        \T1/pcr/m/n/9 par.settings = simpleTheme(pch = 16), auto.key = list(
columns = 2),[] 
[2879] [2880]) (./mgcv-pkg.tex
Chapter 24.
[2881] [2882]
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 []\T1/pcr/m/n/10 bam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL, 
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 []    \T1/pcr/m/n/10 paraPen=NULL,chunk.size=10000,rho=0,AR.start=NULL,discret
e=FALSE,[] 
[2883]
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 []    \T1/pcr/m/n/10 coef=NULL,drop.unused.levels=TRUE,G=NULL,fit=TRUE,drop.in
tercept=NULL,...)[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2884] [2885] [2886] [2887]
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[][][]\T1/pcr/m/n/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
[2888]
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 []\T1/pcr/m/n/9 system.time(b2 <- bam(y ~ s(x0,bs=bs,k=k)+s(x1,bs=bs,k=k)+s(x2
,bs=bs,k=k)+[] 
[2889] [2890] [2891]
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[]\T1/ptm/m/n/10 The link func-tion: one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cloglog" 
[]\T1/ptm/m/n/10 and
[2892] [2893]
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[]\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t
ing en-vi-ron-ment vari-able
[2894] [2895]
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[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
[2896]
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[]\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro
-duc-tion with R (2nd edi-tion).
[2897]
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[2899] [2900] [2901] [2902] [2903] [2904] [2905]
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h + 2*b$family$data$
q^.5),col=2)[] 
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h - 2*b$family$data$
q^.5),col=2)[] 
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 []    \T1/pcr/m/n/9 plot(b$y[oy],rs[oy,ii[1]],ylim=c(-3,3),type="l",ylab="scor
e residuals",[] 
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 []\T1/pcr/m/n/9 bs <- gam(cbind(time,strata)~s(age,by=sex)+sex+s(nodes)+perfor
+rx+obstruct[] 
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 []\T1/pcr/m/n/9 if (i==1) plot(bs$family$data$tr[ind],exp(-bs$family$data$h[in
d]),type="l",[] 
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 []      \T1/pcr/m/n/9 lines(bs$family$data$tr[ind],exp(-bs$family$data$h[ind])
,lwd=2,col=i)[] 
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 []\T1/pcr/m/n/9 b <- gam(t~s(x0)+s(x1)+s(x2,k=15)+s(x3),family=cox.ph,weights=
d,data=surv)[] 
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[2908]
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 []  \T1/pcr/m/n/9 if (inter) prg <- txtProgressBar(min = 0, max = length(sid),
 initial = 0,[] 
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 []    \T1/pcr/m/n/9 if (um[[et]][1]==max(tr)&&um[[status]][1]==1) um[[event]][
nrow(um)] <- 1[] 
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 []\T1/pcr/m/n/9 pd <- data.frame(lapply(X=di,FUN=app,t=di$day,to=te)) ## inter
polate to te[] 
[2910] [2911] [2912] [2913] [2914] [2915] [2916]
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 []\T1/pcr/m/n/9 bd <- bam(y~s(x0)+ s(x1) + s(x1,fac,bs="sz",k=5)+s(x2,k=20),di
screte=TRUE)[] 
[2917] [2918] [2919]
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 []\T1/pcr/m/n/10 fixDependence(X1,X2,tol=.Machine$double.eps^.5,rank.def=0,str
ict=FALSE) 
[2920] [2921] [2922] [2923] [2924] [2925] [2926]
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 []\T1/pcr/m/n/10 gam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL,[] 
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[]\T1/ptm/m/n/10 A GAM for-mula, or a list of for-mu-lae (see [][][]\T1/pcr/m/n
/10 formula.gam[][][] []\T1/ptm/m/n/10 and also
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2927]
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2928] [2929] [2930]
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\T1/ptm/m/n/10 eral lin-ear func-tion-als of smooths, via the sum-ma-tion con-v
en-tion mech-a-nism de-scribed in
[2931] [2932]
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[][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
gamObject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
[2933]
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[2936] [2937]
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 []\T1/pcr/m/n/10 gam.control(nthreads=1,ncv.threads=1,irls.reg=0.0,epsilon = 1
e-07, maxit = 200, 
[2938] [2939] [2940] [2941] [2942] [2943]
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 []         \T1/pcr/m/n/10 mustart = NULL, offset = rep(0, nobs), U1 = diag(nco
l(x)),[] 
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 []         \T1/pcr/m/n/10 printWarn=TRUE,scoreType="REML",null.coef=rep(0,ncol
(x)),[] 
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 []         \T1/pcr/m/n/10 pearson.extra=0,dev.extra=0,n.true=-1,Sl=NULL,nei=NU
LL,...)[] 
[2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951]
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[]\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/pcr/m/n/10 gam []\T1/ptm
/m/n/10 mod-els us-ing []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (
see
[2952] [2953]
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 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
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[]\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix
ed penalty, if
[2957] [2958] [2959] [2960] [2961] [2962] [2963]
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 []  \T1/pcr/m/n/9 mod <- gam(y~s(a,bs="re")+s(b,bs="re")+s(a,b,bs="re")+s(x0,i
d=1)+s(x1,id=1)+[] 
[2964] [2965] [2966]
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 []\T1/pcr/m/n/10 gamlss.gH(X, jj, l1, l2, i2, l3 = 0, i3 = 0, l4 = 0, i4 = 0, 
d1b = 0, 
[2967] [2968]
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2969]
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[]\T1/ptm/m/n/10 In the event of []\T1/pcr/m/n/10 lme []\T1/ptm/m/n/10 con-ver-
gence fail-ures, con-sider mod-i-fy-ing
[2970] [2971]
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[][][]\T1/pcr/m/n/10 magic[][][] []\T1/ptm/m/n/10 for an al-ter-na-tive for cor
-re-lated data, [][][]\T1/pcr/m/n/10 te[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gam[][][][]\T1/ptm
/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 n
egbin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 vis.gam[][][][]\T1/ptm/m/n/1
0 ,[][][]\T1/pcr/m/n/10 pdTens[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gamm4 [
]\T1/ptm/m/n/10 ( [][]$\T1/pcr/m/n/10 https : / / cran . r-[]project .
[2972]
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[2974] [2975] [2976]
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[]\T1/ptm/m/n/10 If `outer' it-er-a-tion has been used to fit the model (see []
[][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 ar-gu-ment
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[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
[2977] [2978] [2979] [2980] [2981] [2982] [2983]
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[]\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/pcr/m/n/10 gam(..
.,fit=FALSE) []\T1/ptm/m/n/10 or
[2984] [2985]
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 []  \T1/pcr/m/n/9 ## example using a scale location model for the motorcycle d
ata. A simple plotting[] 
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 []      \T1/pcr/m/n/9 } else lines(xg,predict(din,xg)$y,col=lcol[j],lwd=lwd[j]
,lty=lty[j])[] 
[2986]
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 []  \T1/pcr/m/n/9 fv <- predict(b,se=TRUE) ## usual Gaussian approximation, fo
r comparison[] 
[2987] [2988]
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 []       \T1/pcr/m/n/9 (1+exp(-10*(x[201:300]-.5)))-0.9933071) + z*(1-z)*5 + r
norm(100)*.4[] 
[2989] [2990] [2991] [2992] [2993]
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 []\T1/pcr/m/n/10 jagam(formula,family=gaussian,data=list(),file,weights=NULL,n
a.action, 
[2994]
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 []\T1/pcr/m/n/10 control=gam.control(),centred=TRUE,sp.prior = "gamma",diagona
lize=FALSE)[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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[2999] [3000]
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 []\T1/pcr/m/n/10 ldTweedie(y,mu=y,p=1.5,phi=1,rho=NA,theta=NA,a=1.001,b=1.999,
all.derivs=FALSE) 
[3001] [3002] [3003] [3004]
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 []\T1/pcr/m/n/9 "The world is ruled by idiots because only an idiot would want
 to rule the world.",[] 
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 []      \T1/pcr/m/n/10 .Machine$double.eps^0.5),extra.rss=0,n.score=length(y),
nthreads=1)[] 
[3009] [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017]
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[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
[3018] [3019]
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 []\T1/pcr/m/n/9 ## Alternative, better scaling example, using the discrete opt
ion with bam...[] 
[3020] [3021]
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 []\T1/pcr/m/n/9 for (sim in c(1,7)) { ## cycle over uncorrelated and correlate
d covariates[] 
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 []    \T1/pcr/m/n/9 dat1[[dname[i]]][dat1[[by.name]]] <- mean(dat1[[dname[i]]]
,na.rm=TRUE)[] 
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[3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033]
[3034] [3035] [3036] [3037] [3038] [3039]
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[3041]
Underfull \hbox (badness 10000) in paragraph at lines 9309--9312
[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/pcr/m/n/10 Dim
.pdIndot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9309--9312
[]\T1/pcr/m/n/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 logDet.pd
Idnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdConstruct.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3118) in paragraph at lines 9309--9312
[]\T1/pcr/m/n/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdMatrix.p
dIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 solve.pdIdnot[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 summary.pdIdnot[]\T1/ptm/m/n/10 .
[3042]
Underfull \hbox (badness 10000) in paragraph at lines 9365--9368
[]\T1/ptm/m/n/10 These func-tions ([]\T1/pcr/m/n/10 pdTens[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdFactor.p
dTens[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3108) in paragraph at lines 9365--9368
[]\T1/pcr/m/n/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdTens
 []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 summary.pdTens[]\T1/ptm/m/n/10 ) would n
ot nor-mally be
[3043] [3044] [3045]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 9585--9585
 []\T1/pcr/m/n/10 plot(x,residuals=FALSE,rug=NULL,se=TRUE,pages=0,select=NULL,s
cale=-1,[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 9586--9586
 []         \T1/pcr/m/n/10 n=100,n2=40,n3=3,pers=FALSE,theta=30,phi=30,jit=FALS
E,xlab=NULL,[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 9589--9589
 []         \T1/pcr/m/n/10 trans=I,seWithMean=FALSE,unconditional=FALSE,by.resi
ds=FALSE,[] 
[3046] [3047] [3048]
Underfull \hbox (badness 1629) in paragraph at lines 9747--9752
[]\T1/ptm/m/n/10 just won't let you do it. In this case, the quick-est op-tion 
is some-times to clone the
[3049] [3050] [3051] [3052]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 9959--9959
 []        \T1/pcr/m/n/10 na.action=na.pass,cluster=NULL,discrete=TRUE,n.thread
s=1,gc.level=0,...)[] 
Underfull \hbox (badness 1062) in paragraph at lines 9996--10000
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 type=="terms" []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 type="iterms" []\T1/ptm/m/n/10 then terms (smooth or para-
[3053] [3054] [3055]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 10129--10129
 []        \T1/pcr/m/n/10 na.action=na.pass,unconditional=FALSE,iterms.type=NUL
L,...)[] 
[3056] [3057]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 10290--10290
 []\T1/pcr/m/n/9 x1 <- seq(.2,.8,length=m1);x2 <- seq(.2,.8,length=m2) ## margi
nal grid points[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 10291--10291
 []\T1/pcr/m/n/9 df <- data.frame(x0=rep(.5,n),x1=rep(x1,m2),x2=rep(x2,each=m1)
,x3=rep(0,n))[] 
[3058]
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Overfull \hbox (9.78043pt too wide) in paragraph at lines 10410--10410
 []  \T1/pcr/m/n/9 Xi[,(i-1)*9+1:9+1] <- Xp[,(i-1)*9+1:9+1] ## Xi%*%coef(b) = s
mooth deriv i[] 
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Underfull \hbox (badness 1205) in paragraph at lines 10448--10449
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 10448--10449
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
Underfull \hbox (badness 1975) in paragraph at lines 10454--10459
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[3061]
Underfull \hbox (badness 1205) in paragraph at lines 10538--10539
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 10538--10539
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
[3062]
Underfull \hbox (badness 10000) in paragraph at lines 10607--10610
[]\T1/ptm/m/n/10 The smooth ob-ject will be largely what is re-turned from
Underfull \hbox (badness 2057) in paragraph at lines 10607--10610
[][][]\T1/pcr/m/n/10 smooth.construct.so.smooth.spec[][][][]\T1/ptm/m/n/10 , al
-though el-e-ments []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 S [
]\T1/ptm/m/n/10 are not needed,
[3063] [3064] [3065]
Underfull \hbox (badness 1253) in paragraph at lines 10737--10739
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
[3066] [3067] [3068] [3069] [3070]
Underfull \hbox (badness 1946) in paragraph at lines 10990--10997
[]\T1/ptm/m/n/10 The sec-ond method rep-re-sents the con-ven-tional ran-dom ef-
fects in a GAM in the same
Underfull \hbox (badness 2221) in paragraph at lines 10990--10997
\T1/ptm/m/n/10 way that the smooths are rep-re-sented --- as pe-nal-ized re-gre
s-sion terms. This method
Underfull \hbox (badness 2042) in paragraph at lines 10990--10997
\T1/ptm/m/n/10 can be used with [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10
 by mak-ing use of []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms in a 
model: see
Underfull \hbox (badness 2846) in paragraph at lines 10998--11001
[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/pcr/m/n
/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/pcr/m/n/10 gam[][][] []\T1
/ptm/m/n/10 can be used:
Underfull \hbox (badness 5862) in paragraph at lines 10998--11001
\T1/ptm/m/n/10 see [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 . If s
mooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[3071]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 11064--11064
 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11074--11074
 []\T1/pcr/m/n/9 ## The effect of the new factor levels (or any interaction inv
olving them)[] 
[3072]
Underfull \hbox (badness 10000) in paragraph at lines 11105--11108
[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/pcr/m/n/
10 "deviance"[]\T1/ptm/m/n/10 ,
[3073] [3074] [3075] [3076] [3077]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 11407--11407
 []\T1/pcr/m/n/10 s(..., k=-1,fx=FALSE,bs="tp",m=NA,by=NA,xt=NULL,id=NULL,sp=NU
LL,pc=NULL) 
[3078] [3079] [3080] [3081] [3082] [3083]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 11780--11780
 []  \T1/pcr/m/n/9 true <- mu + (del * sigma) * sinh((1/del) * asinh(qnorm(qq))
 + (eps/del))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11794--11794
 []\T1/pcr/m/n/9 b <- gam(list(accel~s(times, k=20, bs = "ad"), ~s(times, k = 1
0), ~1, ~1),[] 
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[3085]
Underfull \hbox (badness 3861) in paragraph at lines 11896--11899
[]\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to
 model ma-trix X, or, if
Overfull \hbox (36.78088pt too wide) in paragraph at lines 11905--11905
 []\T1/pcr/m/n/10 Sl.initial.repara(Sl, X, inverse = FALSE, both.sides = TRUE, 
cov = TRUE,[] 
[3086]
Underfull \hbox (badness 10000) in paragraph at lines 11922--11926
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
Underfull \hbox (badness 10000) in paragraph at lines 11962--11966
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
[3087] [3088] [3089]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 12106--12106
 [] \T1/pcr/m/n/9 range(er$values-um$values[ind]);range(abs(er$vectors)-abs(um$
vectors[,ind]))[] 
Underfull \hbox (badness 1975) in paragraph at lines 12117--12122
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[3090]
Underfull \hbox (badness 1803) in paragraph at lines 12194--12198
\T1/ptm/m/n/10 The last en-try will be the []\T1/pcr/m/n/10 by []\T1/ptm/m/n/10
 vari-able, if []\T1/pcr/m/n/10 object$by []\T1/ptm/m/n/10 is not []\T1/pcr/m/n
/10 "NA"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 1502) in paragraph at lines 12206--12218
[]\T1/pcr/m/n/10 cs.smooth.spec []\T1/ptm/m/n/10 (cu-bic re-gres-sion splines w
ith shrinkage-to-zero); []\T1/pcr/m/n/10 cc.smooth.spec
[3091]
Underfull \hbox (badness 2401) in paragraph at lines 12223--12227
[]\T1/ptm/m/n/10 method is used if there is no more spe-cific method avail-able
. Plot meth-ods can be
Underfull \hbox (badness 2970) in paragraph at lines 12223--12227
\T1/ptm/m/n/10 added for spe-cific smooth classes, see source code for []\T1/pc
r/m/n/10 mgcv:::plot.sos.smooth[]\T1/ptm/m/n/10 ,
[3092] [3093] [3094]
Underfull \hbox (badness 6876) in paragraph at lines 12418--12424
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of on
e or two vari-ables, spec-i-fied via terms like
[3095]
Underfull \hbox (badness 10000) in paragraph at lines 12459--12460
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3096] [3097]
Underfull \hbox (badness 10000) in paragraph at lines 12577--12578
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3098]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12631--12631
 []  \T1/pcr/m/n/9 b <- gam(y~s(x0,bs=bs,m=c(4,2))+s(x1,bs=bs)+s(x2,k=15,bs=bs,
m=c(4,3,0))+[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12643--12643
 []  \T1/pcr/m/n/9 ## now a model with first order penalty evaluated over (-.5,
1.5) (black)[] 
[3099]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12655--12655
 []  \T1/pcr/m/n/9 ## penalty defined on (-.5,1.5) gives plausible predictions 
and intervals[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12660--12660
 []  \T1/pcr/m/n/9 ## penalty defined on whole real line gives constant width i
ntervals away[] 
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 []  \T1/pcr/m/n/9 ## penalty defined only over the data interval (0,1) gives w
ild and wide[] 
Overfull \hbox (3.70428pt too wide) in paragraph at lines 12667--12667
 []  \T1/pcr/m/n/9 ## extrapolation since penalty has been \TS1/cmtt/m/n/9 `\T1
/pcr/m/n/9 turned off\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 outside data range:[] 
[3100]
Underfull \hbox (badness 10000) in paragraph at lines 12736--12738
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a
Underfull \hbox (badness 10000) in paragraph at lines 12736--12738
\T1/ptm/m/n/10 term []\T1/pcr/m/n/10 s(...,bs="cr",...)[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 s(...,bs="cs",...) []\T1/ptm/m/n/10 or
[3101] [3102]
Underfull \hbox (badness 10000) in paragraph at lines 12866--12867
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3103] [3104]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12947--12947
 []\T1/pcr/m/n/9 b <- gam(y~s(x,z,bs="ds",m=c(1,.5),k=50),data=data)  ## first 
deriv penalty[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12948--12948
 []\T1/pcr/m/n/9 b1 <- gam(y~s(x,z,bs="ds",m=c(2,.5),k=50),data=data) ## modifi
ed 2nd deriv[] 
[3105] [3106]
Underfull \hbox (badness 10000) in paragraph at lines 13101--13102
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3107] [3108] [3109] [3110] [3111]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13351--13351
 []\T1/pcr/m/n/9 b <- gam(crime ~ s(district,bs="mrf",k=20,xt=xt),data=columb,m
ethod="REML")[] 
[3112]
Underfull \hbox (badness 10000) in paragraph at lines 13412--13414
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3113] [3114]
Underfull \hbox (badness 10000) in paragraph at lines 13571--13574
[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 smooth.construct []\T1/ptm/m/n/10 met
hod a smooth spec-i-fi-ca-tion ob-
Underfull \hbox (badness 3312) in paragraph at lines 13571--13574
\T1/ptm/m/n/10 ject, usu-ally gen-er-ated by a term []\T1/pcr/m/n/10 s(x,...,bs
="re",)[]\T1/ptm/m/n/10 . For the
Underfull \hbox (badness 7099) in paragraph at lines 13571--13574
[]\T1/pcr/m/n/10 predict.Matrix []\T1/ptm/m/n/10 method an ob-ject of class []\
T1/pcr/m/n/10 "random.effect"
[3115] [3116]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13657--13657
 []\T1/pcr/m/n/9 b <- c(rnorm(nb/2)*2,rnorm(nb/2)*.5) ## random effect now with
 2 variances[] 
[3117]
Underfull \hbox (badness 10000) in paragraph at lines 13702--13708
[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
Underfull \hbox (badness 7832) in paragraph at lines 13702--13708
[]\T1/pcr/m/n/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a
 []\T1/pcr/m/n/10 gam []\T1/ptm/m/n/10 for-
[3118] [3119] [3120]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 13916--13916
 []\T1/pcr/m/n/9 ## notice NULL element in \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 xt\TS1
/pcr/m/n/9 ' \T1/pcr/m/n/9 list - to indicate no xt object for "cr" basis...[] 
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Underfull \hbox (badness 10000) in paragraph at lines 14019--14027
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths on th
e sphere, via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14045--14046
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3123] [3124] [3125]
Underfull \hbox (badness 7613) in paragraph at lines 14190--14193
[]\T1/ptm/m/n/10 method an ob-ject of class []\T1/pcr/m/n/10 "sz.interaction" [
]\T1/ptm/m/n/10 pro-duced by the
[3126]
Underfull \hbox (badness 1546) in paragraph at lines 14211--14212
[]\T1/ptm/m/n/10 The terms can have a smooth-ing pa-ram-e-ter per smooth, or a 
sin-gle smooth-ing pa-ram-e-
Overfull \hbox (128.58029pt too wide) in paragraph at lines 14257--14257
 []\T1/pcr/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs
="sz",id=1),data=dat,method="REML")[] 
[3127] [3128] [3129]
Underfull \hbox (badness 3396) in paragraph at lines 14403--14406
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of an
y num-ber of vari-ables, spec-i-fied via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14448--14450
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3130] [3131] [3132] [3133] [3134] [3135]
Underfull \hbox (badness 10000) in paragraph at lines 14739--14741
[]\T1/pcr/m/n/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see
Underfull \hbox (badness 10000) in paragraph at lines 14769--14773
[][][]\T1/pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 t2[][][] [][]tprs[][][][]\T1/ptm/m/n/10 ,[
][][]\T1/pcr/m/n/10 Duchon.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
cubic.regression.spline[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 p.spline[][
][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14769--14773
[][][]\T1/pcr/m/n/10 mrf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 soap[][][
][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Spherical.Spline[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 adaptive.smooth[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14769--14773
[][][]\T1/pcr/m/n/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 ,
[3136] [3137] [3138] [3139] [3140]
Underfull \hbox (badness 2158) in paragraph at lines 15059--15059
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[3141] [3142]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 15138--15138
 []\T1/pcr/m/n/10 spasm.sp(object,sp,w=rep(1,object$nobs),get.trH=TRUE,block=0,
centre=FALSE)[] 
[3143] [3144]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 15272--15272
 []                  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars
"),...)[] 
[3145] [3146]
Underfull \hbox (badness 4846) in paragraph at lines 15403--15406
[]\T1/ptm/m/n/10 The es-ti-mated co-vari-ance ma-trix of the pa-ram-e-ters (or 
es-ti-ma-tors if
[3147] [3148] [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157]
[3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166]
Overfull \hbox (120.78088pt too wide) in paragraph at lines 16621--16621
 []\T1/pcr/m/n/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL,
unconditional=FALSE, ...)[] 
[3167]
Underfull \hbox (badness 1715) in paragraph at lines 16643--16644
[]\T1/ptm/m/n/10 Basically, just ex-tracts []\T1/pcr/m/n/10 object$Ve[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 object$Vp []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 object
$Vc []\T1/ptm/m/n/10 (if avail-able) from a
[3168] [3169] [3170]
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 []\T1/pcr/m/n/10 XWXd(X,w,k,ks,ts,dt,v,qc,nthreads=1,drop=NULL,ar.stop=-1,ar.r
ow=-1,ar.w=-1, 
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 []\T1/pcr/m/n/10 XWyd(X,w,y,k,ks,ts,dt,v,qc,drop=NULL,ar.stop=-1,ar.row=-1,ar.
w=-1,lt=NULL)[] 
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 []\T1/pcr/m/n/10 diagXVXd(X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,rt=
NULL)[] 
[3171]
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[]\T1/ptm/m/n/10 Negative to ig-nore. Oth-er-wise sum rows
Underfull \hbox (badness 1668) in paragraph at lines 16857--16858
[]\T1/pcr/m/n/10 (ar.stop[i-1]+1):ar.stop[i] []\T1/ptm/m/n/10 of the rows se-le
cted by []\T1/pcr/m/n/10 ar.row
[3172]
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[3174]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 17045--17045
 []\T1/pcr/m/n/9 ## 1. If the zero inflation rate becomes decoupled from the li
near predictor,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 17046--17046
 []\T1/pcr/m/n/9 ## it is possible for the linear predictor to be almost unboun
ded in regions[] 
[3175]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17058--17058
 []\T1/pcr/m/n/9 ## 3. Refit fixing the theta parameters at their estimated val
ues, to check we[] 
[3176] [3177] [3178]) (./nlme-pkg.tex
Chapter 25.
[3179]
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[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3180]
Underfull \hbox (badness 1009) in paragraph at lines 174--183
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3181] [3182] [3183] [3184] [3185]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 454--454
 []  \T1/pcr/m/n/9 lme(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
[3186] [3187]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 595--595
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 251-254 ---------------------------
---------------[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 611--611
 []\T1/pcr/m/n/9 # Compare an "lme" object with a "gls" object (test would be n
on-sensical!)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 614--614
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 222-225 ---------------------------
---------------[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 621--621
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 352-365 ---------------------------
---------------[] 
[3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1085--1085
 []                  \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxil
lary fissure"),[] 
[3196]
Underfull \hbox (badness 5446) in paragraph at lines 1147--1149
[]\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 http://stat.gamma.rug.nl/snijders/multilevel
.htm[]\T1/ptm/m/n/10 ', the first edi-tion of
[3197] [3198] [3199] [3200] [3201] [3202] [3203]
Underfull \hbox (badness 10000) in paragraph at lines 1626--1629
[][][]\T1/pcr/m/n/10 lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fixed.
effects.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ranef.lmList[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.ranef.lmList[][][][]\T1/ptm/m/n/10 
,
[3204]
Underfull \hbox (badness 3780) in paragraph at lines 1643--1645
[]\T1/ptm/m/n/10 This method func-tion ex-tracts the co-ef-fi-cients as-so-ci-a
ted with each com-po-nent of the
[3205] [3206] [3207] [3208] [3209]
Underfull \hbox (badness 2042) in paragraph at lines 1992--1998
\T1/ptm/m/n/10 is in-ner to the []\T1/pcr/m/n/10 displayLevel []\T1/ptm/m/n/10 
group-ing fac-tor. If equal to []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 ,
[3210]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2054--2054
 []\T1/pcr/m/n/9 collapse(Pixel, collapse = 1)  # same as collapse(Pixel, colla
pse = "Dog")[] 
[3211]
Underfull \hbox (badness 1132) in paragraph at lines 2143--2145
[]\T1/ptm/m/n/10 fitted model ob-jects, from which pre-dic-tions can be ex-trac
ted us-ing the
[3212] [3213]
Underfull \hbox (badness 4168) in paragraph at lines 2254--2260
[][][]\T1/pcr/m/n/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corAR
MA[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 ,
[3214]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2279--2279
 []  \T1/pcr/m/n/9 gls(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
[3215] [3216] [3217] [3218] [3219] [3220] [3221] [3222]
Underfull \hbox (badness 10000) in paragraph at lines 2845--2849
[][][]\T1/pcr/m/n/10 corFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cor
Matrix.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 recalc.corStruct[
][][][]\T1/ptm/m/n/10 ,
[3223] [3224] [3225] [3226] [3227] [3228pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.corMatrix.corCompSymm}) has been already used, d
uplicate ignored
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  
l.3188 ...trix(cs1, covariate = 1:4, corr = FALSE)
                                                  ] [3229] [3230] [3231]
[3232] [3233] [3234]
Underfull \hbox (badness 6493) in paragraph at lines 3580--3588
[][][]\T1/pcr/m/n/10 corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corGau
s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corLin[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corSp
her[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T
1/ptm/m/n/10 ,
[3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245]
[3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256]
[3257] [3258]
Underfull \hbox (badness 10000) in paragraph at lines 5160--5164
[][][]\T1/pcr/m/n/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/p
cr/m/n/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 ,
[3259] [3260] [3261] [3262] [3263] [3264] [3265]
Underfull \hbox (badness 10000) in paragraph at lines 5592--5595
[][][]\T1/pcr/m/n/10 getGroupsFormula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 getGroups
.gls[][][][]\T1/ptm/m/n/10 ,
[3266] [3267] [3268] [3269] [3270] [3271] [3272] [3273] [3274]
Underfull \hbox (badness 2799) in paragraph at lines 6098--6104
\T1/ptm/m/n/10 covariance ma-trix, ei-ther []\T1/pcr/m/n/10 "random.effects" []
\T1/ptm/m/n/10 for the random-effects
[3275]
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[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3276]
Underfull \hbox (badness 2057) in paragraph at lines 6248--6259
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gl
sControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 glsObject[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gls[][][][]
\T1/ptm/m/n/10 ,
[3277]
Underfull \hbox (badness 10000) in paragraph at lines 6312--6314
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3278] [3279] [3280] [3281]
Underfull \hbox (badness 7133) in paragraph at lines 6560--6564
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3282]
Underfull \hbox (badness 10000) in paragraph at lines 6659--6665
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gn
lsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsObject[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 predict.gnls[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (54.78088pt too wide) in paragraph at lines 6686--6686
 []\T1/pcr/m/n/10 gnlsControl(maxIter = 50, nlsMaxIter = 7, msMaxIter = 50, min
Scale = 0.001, 
[3283]
Underfull \hbox (badness 10000) in paragraph at lines 6724--6726
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3284] [3285] [3286] [3287]
Underfull \hbox (badness 10000) in paragraph at lines 6995--7002
[][][]\T1/pcr/m/n/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gappl
y[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gsummary[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nff
GroupedData[][][][]\T1/ptm/m/n/10 ,
[3288]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7013--7013
 []                \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxilla
ry fissure" ),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7018--7018
 []\T1/pcr/m/n/9 fm1 <- lme( Orth.new )   # fixed and groups formulae extracted
 from object[] 
Underfull \hbox (badness 2875) in paragraph at lines 7040--7042
[]\T1/ptm/m/n/10 an ob-ject to be sum-ma-rized - usu-ally a []\T1/pcr/m/n/10 gr
oupedData []\T1/ptm/m/n/10 ob-ject or a
[3289] [3290] [3291]
Underfull \hbox (badness 10000) in paragraph at lines 7255--7260
[][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr
/m/n/10 Initialize.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initi
alize.glsStruct[][][][]\T1/ptm/m/n/10 ,
[3292] [3293] [3294]
Underfull \hbox (badness 1997) in paragraph at lines 7406--7414
[]\T1/ptm/m/n/10 an op-tional list with con-trol pa-ram-e-ters for the ini-tial
-iza-tion and op-ti-
Underfull \hbox (badness 2205) in paragraph at lines 7406--7414
\T1/ptm/m/n/10 miza-tion al-go-rithms used in []\T1/pcr/m/n/10 lme[]\T1/ptm/m/n
/10 . De-faults to []\T1/pcr/m/n/10 list(niterEM=20,
Underfull \hbox (badness 3118) in paragraph at lines 7429--7432
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initializ
e.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.varFunc[][][][]\T1/ptm/m/
n/10 ,
[3295] [3296] [3297]
Underfull \hbox (badness 3354) in paragraph at lines 7645--7647
[]\T1/ptm/m/n/10 linear model co-ef-fi-cients, only present when []\T1/pcr/m/n/
10 which []\T1/ptm/m/n/10 is not equal to
[3298] [3299] [3300] [3301] [3302] [3303] [3304] [3305]
Underfull \hbox (badness 10000) in paragraph at lines 8173--8190
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lm
e.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme.groupedData[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 lmeObject[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 8173--8190
[][][]\T1/pcr/m/n/10 lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmL
ist[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 plot.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
predict.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qqnorm.lme[][][][]\T1/
ptm/m/n/10 ,
[3306]
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 []    \T1/pcr/m/n/10 subset, method, na.action, control, contrasts, keep.data 
= TRUE)[] 
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[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
[3307] [3308] [3309] [3310]
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 []\T1/pcr/m/n/10 lmeControl(maxIter = 50, msMaxIter = 50, tolerance = 1e-6, ni
terEM = 25, 
[3311]
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
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 []\T1/pcr/m/n/9 # request that information on the evolution of the ms iteratio
ns be printed[] 
[3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322]
[3323]
Underfull \hbox (badness 10000) in paragraph at lines 9345--9352
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 gls[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.corStruct[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9356--9356
 []\T1/pcr/m/n/9 fm1 <- lme(distance ~ Sex * age, Orthodont, random = ~ age, me
thod = "ML") 
[3324] [3325] [3326] [3327] [3328]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9707 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.9707 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                   [3329]
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[]\T1/ptm/m/n/10 a ma-trix, or list of ma-tri-ces, with the same di-men-sions a
s
Underfull \hbox (badness 3108) in paragraph at lines 9771--9774
[]\T1/ptm/m/n/10 a ma-trix with the new val-ues to be as-signed to the positive
-definite
Underfull \hbox (badness 2521) in paragraph at lines 9771--9774
\T1/ptm/m/n/10 ma-trix rep-re-sented by []\T1/pcr/m/n/10 object[]\T1/ptm/m/n/10
 . Must have the same di-men-sions as
[3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339] [3340]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10451--10451
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights, 
[3341]
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 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
Underfull \hbox (badness 1596) in paragraph at lines 10484--10510
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[3342] [3343]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10638--10638
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
[3344] [3345] [3346]
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 []            \T1/pcr/m/n/10 opt = c("nlminb", "nlm"), natural = TRUE, sigma =
 NULL, ...)[] 
Underfull \hbox (badness 2213) in paragraph at lines 10800--10805
[]\T1/ptm/m/n/10 maximum num-ber of it-er-a-tions for [][][]\T1/pcr/m/n/10 nlmi
nb[][][] []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 iter.max[]\T1/ptm/m/n/10 ) or the [
][][]\T1/pcr/m/n/10 nlm[][][]
Underfull \hbox (badness 6961) in paragraph at lines 10822--10826
[]\T1/ptm/m/n/10 a log-i-cal value passed as the []\T1/pcr/m/n/10 trace []\T1/p
tm/m/n/10 to [][][]\T1/pcr/m/n/10 nlminb[][][](.., control=
[3347]
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3348] [3349] [3350] [3351]
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 []\T1/pcr/m/n/9 cfm1 <- confint(fm1) # via profiling each % FIXME: only *one* 
message instead of one *each*[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 11138--11138
 []\T1/pcr/m/n/9 mat.class <- class(matrix(1)) # ("matrix", "array") for R >= 4
.0.0;  ("matrix" in older R)[] 
[3352] [3353] [3354] [3355] [3356] [3357]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11528--11528
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3358] [3359] [3360] [3361] [3362] [3363]
Underfull \hbox (badness 6268) in paragraph at lines 11915--11925
[][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdMatrix[][][][]\T1/ptm/m/n/10 ,
[3364] [3365] [3366] [3367]
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[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 coef.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 pdConstruct[][][][]\T1/ptm/m/n/10 ,
[3368] [3369] [3370] [3371] [3372]
Underfull \hbox (badness 6876) in paragraph at lines 12498--12500
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 value []\T1/ptm/m/n/10 is an \T1/ptm/m/it/
10 ini-tial-ized []\T1/pcr/m/n/10 pdMat []\T1/ptm/m/n/10 ob-ject, []\T1/pcr/m/n
/10 object []\T1/ptm/m/n/10 will be con-structed from
[3373] [3374]
Underfull \hbox (badness 2452) in paragraph at lines 12654--12661
[][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
pdNatural[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdSymm[][][][]\T1/ptm/m/
n/10 , [][][]\T1/pcr/m/n/10 reStruct[][][][]\T1/ptm/m/n/10 ,
[3375]
Underfull \hbox (badness 10000) in paragraph at lines 12720--12726
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pdMatrix.reStruct[][][][]\T1/ptm/m/n/10 ,
[3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 13309--13309
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3385] [3386] [3387] [3388] [3389]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13674--13674
 []\T1/pcr/m/n/9 plot(fm1, resid(., type = "pool") ~ fitted(.) | Sex, abline = 
0, id = 0.05)[] 
[3390]
Underfull \hbox (badness 10000) in paragraph at lines 13701--13704
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nffGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3391]
Underfull \hbox (badness 1838) in paragraph at lines 13744--13751
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/pcr/m/
n/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/pcr/m/n/10 inner
Underfull \hbox (badness 3713) in paragraph at lines 13744--13751
[]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 innerGroups []\T1/ptm/m/n/10 are non-[]\T1
/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 , a leg-end for the dif-fer-ent []\T1/pcr/m/n/
10 inner
Overfull \hbox (12.78088pt too wide) in paragraph at lines 13801--13801
 []\T1/pcr/m/n/10 plot(x, outer, inner, innerGroups, xlab, ylab, strip, aspect,
 panel,[] 
[3392]
Underfull \hbox (badness 10000) in paragraph at lines 13808--13811
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nfnGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
Underfull \hbox (badness 2469) in paragraph at lines 13808--13811
[]\T1/pcr/m/n/10 groupedData []\T1/ptm/m/n/10 ob-ject with a nu-meric pri-mary 
co-vari-ate and a sin-gle
[3393]
Underfull \hbox (badness 10000) in paragraph at lines 13916--13919
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nmGrouped
Data[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3394] [3395]
Underfull \hbox (badness 10000) in paragraph at lines 14010--14012
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 c
ollapse.groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nfnGroupe
dData[][][][]\T1/ptm/m/n/10 ,
[3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 14534--14534
 []\T1/pcr/m/n/9 newOrth <- data.frame(Sex = c("Male","Male","Female","Female",
"Male","Male"),[] 
[3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412]pdfTeX warning (e
xt4): destination with the same identifier (name{Rfn.random.effects}) has been 
already used, duplicate ignored
<to be read again> 
                   \relax 
l.15187 ...Extract Random Effects}{random.effects}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.random.effects.1}) has been already us
ed, duplicate ignored
<to be read again> 
                   \relax 
l.15187 ...Extract Random Effects}{random.effects}
                                                   [3413] [3414] [3415]
[3416] [3417] [3418] [3419] [3420] [3421] [3422]
Underfull \hbox (badness 2126) in paragraph at lines 15826--15830
[]\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199
7). Phar-ma-coki-net-
[3423]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 15834--15834
 []\T1/pcr/m/n/9 plot(Remifentanil, type = "l", lwd = 2) # shows the 65 patient
s\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 remi profiles 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 15853--15853
 []    \T1/pcr/m/n/9 stopifnot(all.equal(BSA, Wt^{0.425} * Ht^{0.725} * 0.00718
4, tol = 1.5e-5),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 15854--15854
 []              \T1/pcr/m/n/9 all.equal(LBM, LBMfn(Wt, Ht, Sex),              
   tol = 7e-7)[] 
[3424]
Underfull \hbox (badness 1009) in paragraph at lines 15884--15893
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3425] [3426]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 16031--16031
 []          \T1/pcr/m/n/10 type = c("response", "pearson", "normalized"), asLi
st = FALSE, ...)[] 
[3427] [3428] [3429] [3430] [3431]
Underfull \hbox (badness 10000) in paragraph at lines 16366--16372
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 l
me[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 solve.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 summary.reStruct[][][][]\T1/ptm/m/n/10 ,
[3432]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 16398--16398
 []         \T1/pcr/m/n/10 method = c("REML", "ML"), niterEM = c(40, 200), useG
en, ...)[] 
[3433] [3434] [3435] [3436] [3437] [3438] [3439]
Underfull \hbox (badness 1728) in paragraph at lines 16885--16888
[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
[3440] [3441] [3442] [3443] [3444]
Underfull \hbox (badness 1803) in paragraph at lines 17219--17228
\T1/pcr/m/n/10 of an Identity" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdIdent[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Positive-Definite,
Underfull \hbox (badness 10000) in paragraph at lines 17219--17228
\T1/pcr/m/n/10 Natural Parametrization" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 p
dNatural[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General
Underfull \hbox (badness 7888) in paragraph at lines 17219--17228
\T1/pcr/m/n/10 Positive-Definite" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdSymm[
]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 data.class(object)
[3445]
Underfull \hbox (badness 10000) in paragraph at lines 17290--17291
[]\T1/pcr/m/n/10 "Constant plus power of variance
Underfull \hbox (badness 10000) in paragraph at lines 17291--17292
[]\T1/pcr/m/n/10 "Constant plus proportion of variance
[3446] [3447] [3448] [3449]
Underfull \hbox (badness 10000) in paragraph at lines 17541--17549
[][][]\T1/pcr/m/n/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varCo
nstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varConstProp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varIdent[][][][]\T1
/ptm/m/n/10 ,
[3450] [3451] [3452] [3453]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 17813--17813
 []\T1/pcr/m/n/9 # Generate some synthetic data using the two-component error m
odel and use 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17815--17815
 []\T1/pcr/m/n/9 # overparameterisation in the case of a constant term in the v
ariance function[] 
[3454] [3455] [3456] [3457] [3458] [3459]
Underfull \hbox (badness 10000) in paragraph at lines 18251--18261
[][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rLin[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18251--18261
[][][]\T1/pcr/m/n/10 Variogram.corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogr
am.corSpher[][][][]\T1/ptm/m/n/10 ,
[3460]
Underfull \hbox (badness 3579) in paragraph at lines 18289--18294
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3461]
Underfull \hbox (badness 3579) in paragraph at lines 18353--18358
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3462]
Underfull \hbox (badness 3579) in paragraph at lines 18416--18421
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3463]
Underfull \hbox (badness 1577) in paragraph at lines 18477--18479
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 "[][]corR
atio[][][]"[]\T1/ptm/m/n/10 , rep-re-sent-ing an Ra-tio-nal
Underfull \hbox (badness 3579) in paragraph at lines 18479--18484
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3464]
Underfull \hbox (badness 3579) in paragraph at lines 18542--18547
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
Underfull \hbox (badness 10000) in paragraph at lines 18575--18584
[][][]\T1/pcr/m/n/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Va
riogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.default[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18575--18584
[][][]\T1/pcr/m/n/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 Variogram.corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rRatio[][][][]\T1/ptm/m/n/10 ,
[3465]
Underfull \hbox (badness 3579) in paragraph at lines 18614--18619
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3466] [3467]
Underfull \hbox (badness 1009) in paragraph at lines 18760--18769
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3468] [3469]
Underfull \hbox (badness 1009) in paragraph at lines 18892--18901
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3470] [3471] [3472] [3473] [3474] [3475] [3476] [3477] [3478]) (./nnet-pkg.tex
Chapter 26.
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.multinom.1}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                   [3479]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 71--71
 []         \T1/pcr/m/n/10 contrasts = NULL, Hess = FALSE, summ = 0, censored =
 FALSE,[] 
[3480] [3481] [3482]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 371--371
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3483]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 428--428
 []\T1/pcr/m/n/9 targets <- matrix(c(rep(c(1,0,0),50), rep(c(0,1,0),50), rep(c(
0,0,1),50)),[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 431--431
 []\T1/pcr/m/n/9 ir1 <- nnet(ir[samp,], targets[samp,], size=2, rang=0.1, decay
=5e-4, maxit=200)[] 
[3484] [3485]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 511--511
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3486]) (./rpart-pkg.tex
Chapter 27.
[3487] [3488] [3489] [3490]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 324--324
 []\T1/pcr/m/n/10 labels(object, digits = 4, minlength = 1L, pretty, collapse =
 TRUE, ...)[] 
[3491] [3492] [3493] [3494]
Underfull \hbox (badness 1442) in paragraph at lines 592--598
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , the leaf nodes wil
l be at the hor-i-zon-tal plot co-or-di-nates of
[3495] [3496]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 738--738
 []     \T1/pcr/m/n/10 filename = paste(deparse(substitute(tree)), ".ps", sep =
 ""),[] 
Underfull \hbox (badness 10000) in paragraph at lines 771--775
[]\T1/ptm/m/n/10 Logical. If []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault),
 adds to the la-bel
Underfull \hbox (badness 1142) in paragraph at lines 771--775
\T1/pcr/m/n/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method [
]\T1/pcr/m/n/10 class[]\T1/ptm/m/n/10 , \T1/pcr/m/n/10 n
[3497] [3498] [3499]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 915--915
 []\T1/pcr/m/n/9 predict(fit, type = "matrix") # level number, class frequencie
s, probabilities[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 934--934
 []\T1/pcr/m/n/10 print(x, minlength = 0, spaces = 2, cp, digits = getOption("d
igits"),[] 
[3500] [3501] [3502] [3503]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 1180--1180
 []\T1/pcr/m/n/10 rpart(formula, data, weights, subset, na.action = na.rpart, m
ethod, 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1181--1181
 []      \T1/pcr/m/n/10 model = FALSE, x = FALSE, y = TRUE, parms, control, cos
t, ...)[] 
Underfull \hbox (badness 2846) in paragraph at lines 1243--1245
[]\T1/ptm/m/n/10 a list of op-tions that con-trol de-tails of the []\T1/pcr/m/n
/10 rpart []\T1/ptm/m/n/10 al-go-rithm. See
[3504]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1287--1287
 []\T1/pcr/m/n/9 par(mfrow = c(1,2), xpd = NA) # otherwise on some devices the 
text is clipped[] 
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 []\T1/pcr/m/n/10 rpart.control(minsplit = 20, minbucket = round(minsplit/3), c
p = 0.01, 
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1304--1304
 []              \T1/pcr/m/n/10 maxcompete = 4, maxsurrogate = 5, usesurrogate 
= 2, xval = 10,[] 
[3505] [3506] [3507] [3508] [3509] [3510] [3511]
Underfull \hbox (badness 1565) in paragraph at lines 1760--1763
[]\T1/ptm/m/n/10 the ploidy sta-tus of the tu-mor, from flow cy-tom-e-try. Val-
ues are `[]\T1/pcr/m/n/10 diploid[]\T1/ptm/m/n/10 ',
[3512]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1854--1854
 []     \T1/pcr/m/n/10 pretty = NULL, digits = getOption("digits") - 3, use.n =
 FALSE,[] 
[3513] [3514] [3515]) (./spatial-pkg.tex [3516]
Chapter 28.
[3517] [3518] [3519] [3520] [3521] [3522]
Underfull \hbox (badness 10000) in paragraph at lines 423--427
[3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533]
[3534] [3535]) (./survival-pkg.tex [3536]
Chapter 29.
[3537] [3538]
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 []\T1/pcr/m/n/9 aareg(formula = Surv(time, status) ~ age + sex + ph.ecog, data
 = lung, nmin = 1[] 
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 []\T1/pcr/m/n/9 ## Not run: lines(lfit2[4], col=2)  # Nearly the same, until t
he last point[] 
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 []\T1/pcr/m/n/9 # Chronic Granuomatous Disease.  See section 8.5 of Therneau a
nd Grambsch.[] 
[3539] [3540]
Underfull \hbox (badness 6412) in paragraph at lines 284--286
[]\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as 
long as
[3541] [3542]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.aml}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica
te ignored
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                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                   [3543]
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(futime, fustat) ~ resid.ds *rx + ecog.ps, da
ta = ovarian) 
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 []\T1/pcr/m/n/9 fit2 <- coxph(Surv(futime, fustat) ~ resid.ds +rx + ecog.ps, d
ata=ovarian)[] 
[3544]
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 []    \T1/pcr/m/n/10 survreg(Surv(time, status) ~ age + sex + factor(ph.ecog),
 lung)[] 
[3545] [3546] [3547] [3548]
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 []\T1/pcr/m/n/9 py <- pseudo(survfit(Surv(time, status) ~1, lung), time=730) #
2 year survival 
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 []    \T1/pcr/m/n/10 method =c("Prentice","SelfPrentice","LinYing","I.Borgan",
"II.Borgan"),[] 
[3549] [3550]
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 []   \T1/pcr/m/n/9 subcoh = ~subcohort, id=~seqno, stratum=~instit, cohort.siz
e=stratsizes,[] 
[3551] [3552] [3553]
Underfull \hbox (badness 1097) in paragraph at lines 1110--1112
[]\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi
al and negative-binomial data.
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1130--1130
 []\T1/pcr/m/n/9 ppois(4, 10.24153)     #chance of seeing 4 or fewer events wit
h large rate[] 
[3554] [3555]
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 []\T1/pcr/m/n/9 ## Not run: clogit(case ~ spontaneous + induced + strata(strat
um), data=infert) 
[3556]
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 []\T1/pcr/m/n/9 marginal.model <- coxph(Surv(time, status) ~ rx, data= rats, c
luster=litter, 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1312 ...erapy for Stage B/C colon cancer}{colon}
                                                   [3557]
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 []  \T1/pcr/m/n/10 influence=0, ranks = FALSE, reverse=FALSE, timefix=TRUE, ke
epstrata=10, ...)[] 
[3558] [3559] [3560]
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 []\T1/pcr/m/n/9 options(na.action = na.exclude)   # predict all 1384 obs, incl
uding missing[] 
[3561] [3562]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1732--1732
 []\T1/pcr/m/n/10 cox.zph(fit, transform="km", terms=TRUE, singledf=FALSE, glob
al=TRUE) 
[3563] [3564] [3565] [3566]
Underfull \hbox (badness 10000) in paragraph at lines 2048--2063
[]\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f
ol-low the ad-vice of
Underfull \hbox (badness 7486) in paragraph at lines 2048--2063
\T1/ptm/m/n/10 some cod-ing guides and prepend []\T1/pcr/m/n/10 survival:: []\T
1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the spe-
Underfull \hbox (badness 10000) in paragraph at lines 2048--2063
\T1/ptm/m/n/10 cial terms, e.g., []\T1/pcr/m/n/10 survival::coxph(survival:Surv
(time, status) ~ age +
[3567]
Underfull \hbox (badness 3861) in paragraph at lines 2143--2147
[][][]\T1/pcr/m/n/10 coxph.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
coxphms.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxph.control[][][]
[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cluster[][][][]\T1/ptm/m/n/10 , [][][]\
T1/pcr/m/n/10 strata[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Surv[][][][]\
T1/ptm/m/n/10 ,
[3568]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2198--2198
 []\T1/pcr/m/n/10 iter.max = 20, toler.inf = sqrt(eps), outer.max = 10, timefix
=TRUE)[] 
[3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576] [3577]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2825--2825
 [] \T1/pcr/m/n/9 [1] "extreme"     "logistic"    "gaussian"    "weibull"     "
exponential"[] 
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 []\T1/pcr/m/n/10 finegray(formula, data, weights, subset, na.action= na.pass, 
etype, 
[3578] [3579] [3580] [3581]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3110--3110
 []\T1/pcr/m/n/10 frailty.t(x, sparse = (nclass > 5), theta, df, eps = 1e-05, t
df = 5,[] 
[3582] [3583] [3584] [3585] [3586]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3451--3451
 []\T1/pcr/m/n/9 kfit <- coxph(Surv(time, status)~ age + sex + disease + frailt
y(id), kidney) 
[3587]
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 []           \T1/pcr/m/n/9 factor(c(0, 1, 2,1,0,2), 0:2, c("censored", "progre
ssion", "death")))[] 
Underfull \hbox (badness 1389) in paragraph at lines 3500--3502
[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
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 []        \T1/pcr/m/n/10 conf.type = c("log", "log-log", "plain", "logit", "ar
csin"),[] 
[3588] [3589]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3645--3645
 []                 \T1/pcr/m/n/9 rmap=list(sex=sex, age=age*365.35, year=as.Da
te(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 1979/01/01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3590] [3591]
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 [] [] 
[3592] [3593]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3908--3908
 []\T1/pcr/m/n/9 # surprise) but their rates of conversion to PCM are essential
ly the same.[] 
[3594] [3595] [3596] [3597] [3598] [3599] [3600]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4344--4344
 []                    \T1/pcr/m/n/9 entry.dt = as.Date(paste("2011", 1:10, "5"
, sep=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 -\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3601] [3602]
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 []\T1/pcr/m/n/9 tdata <- data.frame(x= lung$age, y = 10*log(lung$age-35) + rno
rm(228, 0, 2))[] 
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 []\T1/pcr/m/n/9 knots <- unlist(attributes(fit1$model[[2]])[c(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 Boundary.knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , \TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )])[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4503--4503
 []\T1/pcr/m/n/9 unname(coef(fit1)[-1] - coef(fit1)[1])  # differences: yhat[2:
4] - yhat[1][] 
[3603]
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[3605] [3606] [3607] [3608] [3609]
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 [] \T1/pcr/m/n/10 pch=3, col=1, lty=1, lwd=1, cex=1, log=FALSE, xscale=1, ysca
le=1,[] 
[3610] [3611] [3612]
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 []\T1/pcr/m/n/10 se.fit=FALSE, na.action=na.pass, terms=names(object$assign), 
collapse,[] 
[3613]
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 []\T1/pcr/m/n/9 mresid <- (lung$status-1) - predict(fit, type=\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 expected\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ) #Martingale resid[] 
[3614]
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 []  \T1/pcr/m/n/9 predict(fit, reference="sample") + sum(coef(fit) * fit$means
, na.rm=TRUE)[] 
[3615]
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 []\T1/pcr/m/n/9 pct <- 1:98/100   # The 100th percentile of predicted survival
 is at +infinity[] 
[3616]
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 []  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars"), expand=FALSE
, ...)[] 
[3617]
Underfull \hbox (badness 1852) in paragraph at lines 5520--5522
[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.survfit"[]\T1/pt
m/m/n/10 , which is the re-sult of the
[3618] [3619]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 5646--5646
 []\T1/pcr/m/n/10 pseudo(fit, times, type, addNA=TRUE, data.frame=FALSE, minus1
=FALSE, ...) 
[3620] [3621]
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 []\T1/pcr/m/n/9 rhat <- predict(rfit, newdata=expand.grid(ph.ecog=0:3, sex=1:2
), se.fit=TRUE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5769--5769
 []\T1/pcr/m/n/9 # the estimate for ph.ecog=3 is very unstable (n=1), pseudoval
ues smooth it.[] 
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 []\T1/pcr/m/n/9 # In all the above we should be using the robust variance, e.g
., svyglm, but[] 
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 []\T1/pcr/m/n/10 pspline(x, df=4, theta, nterm=2.5 * df, degree=3, eps=0.1, me
thod, 
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 []   \T1/pcr/m/n/10 Boundary.knots=range(x), intercept=FALSE, penalty=TRUE, co
mbine, ...)[] 
[3622] [3623] [3624]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5959--5959
 []  \T1/pcr/m/n/10 py <- pyears(futime ~ rx, rmap=list(age=age, sex=sex, year=
entry.dt),[] 
[3625]
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 []\T1/pcr/m/n/9 pfit <- pyears(Surv(ptime/365.25, pstat) ~ temp.yr + temp.age 
+ sex,  mgus,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6082--6082
 []\T1/pcr/m/n/9 fit1 <- pyears(Surv(stop/365.25, event) ~ cut(age + 48, c(0,50
,60,70,100)) +[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6084--6084
 []\T1/pcr/m/n/9 fit2 <- pyears(Surv(stop/365.25, event) ~ tcut(age + 48, c(0,5
0,60,70,100)) +[] 
[3626] [3627] [3628] [3629]
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[3631] [3632]
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 []       \T1/pcr/m/n/10 collapse=FALSE, weighted= (type %in% c("dfbeta", "dfbe
tas")), ...)[] 
[3633] [3634] [3635]
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 []\T1/pcr/m/n/10 residuals(object, type=c("response", "deviance","dfbeta","dfb
etas",[] 
Underfull \hbox (badness 1043) in paragraph at lines 6743--6746
[]\T1/pcr/m/n/10 "dfbetas"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "working"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "ldcase"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lsresp
"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ldshape"[]\T1/ptm/m/n/10 , and
[3636] [3637] [3638] [3639]
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 []\T1/pcr/m/n/9 lfit1 <- survreg(Surv(time, status) ~ age + ridge(ph.ecog, the
ta=5), lung)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 7051--7051
 []\T1/pcr/m/n/9 lfit2 <- survreg(Surv(time, status) ~ sex + ridge(age, ph.ecog
, theta=1), lung)[] 
[3640] [3641] [3642]
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 []\T1/pcr/m/n/10 rttright(formula, data, weights, subset, na.action, times, id
, timefix = TRUE) 
[3643]
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 []\T1/pcr/m/n/9 cdf <- cdf[!duplicated(aml$time[index], fromLast=TRUE)]  # rem
ove duplicate times[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7308--7308
 []\T1/pcr/m/n/9 wt2 <- rttright(Surv(dtime, death) ~ hormon, rotterdam, times=
 365*c(3, 5))[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7312 ...ata from a soldering experiment}{solder}
                                                   [3644]
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[3645]
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 []\T1/pcr/m/n/10 statefig(layout, connect, margin = 0.03, box = TRUE, cex = 1,
 col = 1, 
[3646] [3647] [3648] [3649] [3650]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 7782--7782
 []\T1/pcr/m/n/10 event = TRUE, pyears = TRUE, expected = TRUE, rate = FALSE, r
r =expected,[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 7783--7783
 []\T1/pcr/m/n/10 ci.r = FALSE, ci.rr = FALSE, totals=FALSE, legend = TRUE, vli
ne = FALSE,[] 
[3651] [3652] [3653] [3654] [3655]
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 []    \T1/pcr/m/n/10 type=c(\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 right\TS1/pcr/m/n/
10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 left\TS1/pcr/m/n/10 '\T1/p
cr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval\TS1/pcr/m/n/10 '\T1/pcr/m/
n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 counting\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 
, \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval2\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \T
S1/pcr/m/n/10 '\T1/pcr/m/n/10 mstate\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ),[] 
[3656] [3657] [3658]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 median[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10
 quantile []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 meth-ods 
first con-struct a sur-vival curve us-ing
[3659] [3660]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 8519--8519
 []\T1/pcr/m/n/10 survcheck(formula, data, subset, na.action, id, istate, istat
e0="(s0)", 
[3661] [3662]
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 []\T1/pcr/m/n/10 survcondense(formula, data, subset, weights, na.action= na.pa
ss, id, 
[3663] [3664] [3665]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 8832--8832
 []                  \T1/pcr/m/n/9 rmap= list(age=(accept.dt - birth.dt), sex=1
, year=accept.dt),[] 
[3666]
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 []        \T1/pcr/m/n/10 method=c("ederer", "hakulinen", "conditional", "indiv
idual.h",[] 
Underfull \hbox (badness 1038) in paragraph at lines 8899--8905
[]\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre
-dicted sur-vival
[3667]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 8951--8951
 []                      \T1/pcr/m/n/10 rmap = list(year=entry.dt, age=(birth.d
t-entry.dt)),[] 
[3668]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9037--9037
 []\T1/pcr/m/n/9 summary(fit1, times=1:10*182.5, scale=365) #expected survival 
by 1/2 years[] 
[3669] [3670] [3671]
Underfull \hbox (badness 10000) in paragraph at lines 9257--9262
[][][]\T1/pcr/m/n/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 survfit.object[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.survfit[][][][]\T1/ptm/m/n/10 
,
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 []        \T1/pcr/m/n/10 se.fit=TRUE, conf.int=.95, individual=FALSE, stype=2,
 ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
[3672]
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 []        \T1/pcr/m/n/10 se.fit=FALSE, conf.int=.95, individual=FALSE, stype=2
, ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
[3673] [3674]
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 []        \T1/pcr/m/n/10 stype=1, ctype=1, id, cluster, robust, istate, timefi
x=TRUE,[] 
[3675] [3676]
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\T1/pcr/m/n/10 ctype=1[]\T1/ptm/m/n/10 , "fleming-harrington" which is equiv-a-
lent to []\T1/pcr/m/n/10 stype=2,
[3677] [3678]
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 []\T1/pcr/m/n/9 #  There are no interval censored subjects, only left-censored
 (status=3),[] 
[3679] [3680] [3681] [3682] [3683]
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 []\T1/pcr/m/n/10 survfitcoxph.fit(y, x, wt, x2, risk, newrisk, strata, se.fit,
 survtype, 
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[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
[3684]
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 []\T1/pcr/m/n/10 survConcordance(formula, data, weights, subset, na.action) # 
use concordance 
[3685] [3686]
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\T1/ptm/m/n/10 it is as-sumed to name an el-e-ment from [][][]\T1/pcr/m/n/10 su
rvreg.distributions[][][][]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 These in-clude []\T1/pcr/m/n/10 "weibull"[]\T1/ptm/m/n/10 , []\T
1/pcr/m/n/10 "exponential"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "gaussian"[]\T1/p
tm/m/n/10 ,
Underfull \hbox (badness 1297) in paragraph at lines 10419--10426
[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 ,[]\T1/pcr/m/n/10 "lognormal" []\T1
/ptm/m/n/10 and []\T1/pcr/m/n/10 "loglogistic"[]\T1/ptm/m/n/10 . Oth-er-wise, i
t is
[3687] [3688]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 10509--10509
 []\T1/pcr/m/n/9 # There are multiple ways to parameterize a Weibull distributi
on. The survreg[] 
[3689] [3690]
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 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3691] [3692]
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 []                            \T1/pcr/m/n/9 temp/pi, -2 *x*temp, 2*temp^2*(4*x
^2*temp -1))[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 10801--10801
 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3693] [3694] [3695]
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 []\T1/pcr/m/n/9 pfit2 <- pyears(Surv(years, death) ~ fgrp + agegrp, scale =100
0, data=test)[] 
[3696] [3697]
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 []\T1/pcr/m/n/9 # The first data set contains data on 312 subjects in a clinic
al trial plus[] 
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 []\T1/pcr/m/n/9 # 106 that agreed to be followed off protocol, the second data
 set has data[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11126--11126
 []               \T1/pcr/m/n/9 protime = tdc(day, protime), alk.phos = tdc(day
, alk.phos))[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 11128--11128
 []\T1/pcr/m/n/9 fit <- coxph(Surv(tstart, tstop, endpt==2) ~ protime + log(bil
i), data=pbc2)[] 
[3698] [3699] [3700] [3701] [3702] [3703] [3704]
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[]\T1/pcr/m/n/10 determinant,MatrixFactorization,missing-method 
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\T1/ptm/m/it/10 (\T1/pcr/m/sl/10 MatrixFactorization-class\T1/ptm/m/it/10 )\T1/
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ptm/m/n/10 , 
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[]\T1/pcr/m/n/10 Logic,CsparseMatrix,CsparseMatrix-method 
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[]\T1/pcr/m/n/10 Logic,triangularMatrix,diagonalMatrix-method 
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[]\T1/pcr/m/n/10 Ops,atomicVector,sparseVector-method 
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[]\T1/pcr/m/n/10 rcond,denseMatrix,character-method 
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[]\T1/pcr/m/n/10 rcond,dgeMatrix,character-method 
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[3837]
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[3838] [3839] [3840] [3841]
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[]\T1/pcr/m/n/10 Schur,diagonalMatrix,logical-method 
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[]\T1/pcr/m/n/10 Schur,generalMatrix,logical-method 
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[3846]
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[3847]
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[]\T1/pcr/m/n/10 solve,MatrixFactorization,ANY-method 
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[3848]
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[3851] [3852] [3853] [3854]
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[3855]
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[]\T1/ptm/m/n/10 the small-est pos-i-tive floating-point num-ber []\T1/pcr/m/n/
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/pcr/m/n/10 x [
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\T1/pcr/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/p
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[]\T1/pcr/m/n/10 8[]\T1/ptm/m/n/10 ) is much pre-ferred these days. Note that t
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[]\T1/pcr/m/n/10 *.exponent[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 *.min.exp[]\T1/p
tm/m/n/10 , and []\T1/pcr/m/n/10 *.max.exp[]\T1/ptm/m/n/10 , com-puted en-tirel
y anal-o-gously to their
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[][][]\T1/pcr/m/n/10 R.version[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 
Sys.info[][][] []\T1/ptm/m/n/10 give more de-tails about the OS. In par-tic-u-l
ar,
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# "absolute"[] 
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[]\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . orac
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 []              \T1/pcr/m/n/10 cut.names = FALSE, col.names = names(x), fix.em
pty.names = TRUE,[] 
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[]\T1/ptm/m/n/10 logical or in-te-ger; in-di-cat-ing if col-umn names with more
 than 256 (or
[32]
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[]\T1/ptm/m/n/10 Direct calls to []\T1/pcr/m/n/10 as.data.frame.<class>() []\T1
/ptm/m/n/10 are still pos-si-ble (base pack-age!), for 12
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\T1/ptm/m/n/10 atomic base classes, but will dep-re-cated (al-ready vis-i-bly b
y set-ting en-vi-ron-ment vari-
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\T1/ptm/m/n/10 able []\T1/pcr/m/n/10 _R_CHECK_AS_DATA_FRAME_EXPLICIT_METHOD_ []
\T1/ptm/m/n/10 to non-empty) where call-ing
[33] [34] [35]
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 []\T1/pcr/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[36]
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[]\T1/ptm/m/n/10 If [][][]\T1/pcr/m/n/10 is.object[][][](x) []\T1/ptm/m/n/10 is
 true and it has a [][][]\T1/pcr/m/n/10 class[][][] []\T1/ptm/m/n/10 for which 
an
[37] [38] [39] [40]
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 []\T1/pcr/m/n/9 (now <- as.POSIXlt(Sys.time())) # the current datetime, as cla
ss "POSIXlt"[] 
[41] [42] [43]
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[]\T1/ptm/m/n/10 There are no re-stric-tions on the name given as []\T1/pcr/m/n
/10 x[]\T1/ptm/m/n/10 : it can be a non-syntactic name (see
[44] [45]
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 []\T1/pcr/m/n/10 attach(what, pos = 2L, name = deparse1(substitute(what), back
tick=FALSE), 
[46] [47] [48] [49] [50] [51] [52]
Underfull \hbox (badness 10000) in paragraph at lines 3413--3416
[]\T1/pcr/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[]
[][] ver-sion of []\T1/pcr/m/n/10 balancePOSIXlt(x,
[53] [54] [55] [56]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 3718--3718
 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", nus), col = nus + 2, 
lwd = 1, bty="n")[] 
[57]
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 []\T1/pcr/m/n/9 plot(range(x0), c(1e-40, 1), log = "xy", xlab = "x", ylab = ""
, type = "n",[] 
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 []     \T1/pcr/m/n/9 main = "Bessel Functions  J_nu(x)  near 0\n log - log  sc
ale") ; axis(2, at=1)[] 
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 []\T1/pcr/m/n/9 plot(range(x0), 10^c(-100, 80), log = "xy", xlab = "x", ylab =
 "", type = "n",[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 3758--3758
 []     \T1/pcr/m/n/9 main = "Bessel Functions  K_nu(x)  near 0\n log - log  sc
ale") ; axis(2, at=1)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3761--3761
 []\T1/pcr/m/n/9 legend("topright", legend = paste("nu=", paste(nus, nus + 0.5,
 sep = ", ")),[] 
Underfull \vbox (badness 10000) has occurred while \output is active [58]
[59] [60] [61] [62] [63] [64]
Underfull \hbox (badness 10000) in paragraph at lines 4209--4211
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[65] [66] [67] [68] [69] [70] [71]
Underfull \hbox (badness 4927) in paragraph at lines 4714--4718
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the name of a C func-tion, or an 
ob-ject
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\T1/ptm/m/n/10 of class []\T1/pcr/m/n/10 "[][]NativeSymbolInfo[][][]"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "[][]RegisteredNativeSymbol[][][]" []\T1/ptm/m/n/10 o
r
[72]
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 []             \T1/pcr/m/n/10 Xchk = any(nas %in% c("X11", "jpeg", "png", "tif
f")))[] 
[73]
Underfull \hbox (badness 4595) in paragraph at lines 4872--4875
[]\T1/ptm/m/n/10 is ICU avail-able for col-la-tion? See the help on [][]Com-par
-i-son[][][] and
[74] [75] [76]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5035--5035
 []\T1/pcr/m/n/9 cat(paste(letters, 100* 1:26), fill = TRUE, labels = paste0("{
", 1:10, "}:"))[] 
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[]\T1/ptm/m/n/10 (generalized) vec-tors or ma-tri-ces. These can be given as na
med ar-gu-
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[]\T1/ptm/m/n/10 (only for data frame method:) log-i-cal in-di-cat-ing if uniqu
e and valid
[77] [78] [79]
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 []\T1/pcr/m/n/9 rbind(1:4, c = 2, "a++" = 10, dd, deparse.level = 1) # 3 rowna
mes (default)[] 
[80] [81] [82]
Underfull \hbox (badness 2521) in paragraph at lines 5505--5507
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[83] [84] [85] [86] [87] [88] [89] [90]
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[]\T1/ptm/m/n/10 When a generic func-tion []\T1/pcr/m/n/10 fun []\T1/ptm/m/n/10
 is ap-plied to an ob-ject with class at-tribute []\T1/pcr/m/n/10 c("first",
[91] [92] [93] [94] [95] [96] [97] [98]
Underfull \hbox (badness 1796) in paragraph at lines 6571--6579
[]\T1/ptm/m/n/10 Collation of char-ac-ter strings is a com-plex topic. For an i
n-tro-duc-tion see [][]$\T1/pcr/m/n/10 https : / /
[99] [100] [101]
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 []\T1/pcr/m/n/9 ## The exact result of this *depends* on the platform, compile
r, math-library:[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 6770--6770
 []\T1/pcr/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6771--6771
 []\T1/pcr/m/n/9 showC(NpNA)# but not always is {shows  \TS1/pcr/m/n/9 '\T1/pcr
/m/n/9 (R = NaN, I = NA)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 on some platforms}[] 
[102] [103]
Underfull \hbox (badness 1635) in paragraph at lines 6973--6976
[]\T1/ptm/m/n/10 User in-ter-rupts sig-nal a con-di-tion of class []\T1/pcr/m/n
/10 interrupt []\T1/ptm/m/n/10 that in-her-its di-rectly from class
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[]\T1/ptm/m/n/10 Restarts are used for es-tab-lish-ing re-cov-ery pro-to-cols. 
They can be es-tab-lished us-ing
[104]
Underfull \hbox (badness 1308) in paragraph at lines 7020--7028
[]\T1/ptm/m/n/10 One ad-di-tional field that can be spec-i-fied for a restart i
s []\T1/pcr/m/n/10 interactive[]\T1/ptm/m/n/10 . This should
[105] [106]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 7184--7184
 []\T1/pcr/m/n/10 unz(description, filename, open = "", encoding = getOption("e
ncoding"))[] 
[107]
Underfull \hbox (badness 4505) in paragraph at lines 7236--7239
[]\T1/ptm/m/n/10 character string, par-tially matched to []\T1/pcr/m/n/10 c("de
fault", "internal",
[108] [109]
Underfull \hbox (badness 1997) in paragraph at lines 7373--7378
[]\T1/pcr/m/n/10 file[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pipe[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 fifo[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 url[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 gzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 bzfile[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 xzfile[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 unz[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 socketConnection[]\T1/ptm/m/n/10 ,
[110] [111] [112]
Underfull \hbox (badness 10000) in paragraph at lines 7621--7623
[]\T1/ptm/m/n/10 It may be pos-si-ble to de-duce the cur-rent na-tive en-cod-in
g from
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[]\T1/pcr/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/pcr/m/n/10 descri
ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/pcr/m/n/10 "r" []\T1/ptm/m/n
/10 only. This
Underfull \hbox (badness 6592) in paragraph at lines 7663--7670
\T1/ptm/m/n/10 reads the X11 pri-mary se-lec-tion (see [][]$\T1/pcr/m/n/10 http
s : / / specifications . freedesktop .
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[]\T1/pcr/m/n/10 "X11_primary" []\T1/ptm/m/n/10 and the sec-ondary se-lec-tion 
as []\T1/pcr/m/n/10 "X11_secondary"[]\T1/ptm/m/n/10 . On most sys-
[113] [114] [115]
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Overfull \hbox (4.38043pt too wide) in paragraph at lines 7878--7878
 []\T1/pcr/m/n/9 A <- read.table(con <- file("students", encoding = "UCS-2LE"))
; close(con)[] 
[117] [118] [119] [120]
Underfull \hbox (badness 10000) in paragraph at lines 8211--8213
[]\T1/ptm/m/n/10 The cur-rent eval-u-a-tion depth (in-clud-ing two calls for th
e call to
[121] [122] [123]
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 []\T1/pcr/m/n/9 curlGetHeaders("http://bugs.r-project.org")   ## this redirect
s to https://[] 
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 []\T1/pcr/m/n/9 ## curlGetHeaders("ftp://cran.r-project.org") ## ftp::// suppo
rt is vanishing[] 
[124] [125] [126] [127]
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 []\T1/pcr/m/n/9 tm <- seq(as.POSIXct("2012-06-01 06:00"), by = "6 hours", leng
th.out = 24)[] 
[128]
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[]\T1/pcr/m/n/10 data.frame []\T1/ptm/m/n/10 con-verts each of its ar-gu-ments 
to a data frame by call-ing
Underfull \hbox (badness 1975) in paragraph at lines 8718--8728
[][][]\T1/pcr/m/n/10 as.data.frame[][][](optional = TRUE)[]\T1/ptm/m/n/10 . As 
that is a generic func-tion, meth-ods can be
[129] [130] [131]
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 []                 \T1/pcr/m/n/9 c = seq(as.Date("2004-01-01"), by = "week", l
ength.out = 3),[] 
[132] [133] [134] [135]
Underfull \hbox (badness 10000) in paragraph at lines 9214--9226
\T1/pcr/m/n/10 23:59:59", format = "%Y-%m-%d %H:%M:%S", tz = "UTC") []\T1/ptm/m
/n/10 may give []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 , and
[136] [137] [138] [139] [140] [141] [142]
Underfull \hbox (badness 10000) in paragraph at lines 9758--9762
[]\T1/pcr/m/n/10 .Defunct []\T1/ptm/m/n/10 is called from de-funct func-tions. 
Func-tions should be listed in
[143] [144]
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 []\T1/pcr/m/n/9 ### Promises in an environment [for advanced users]:  --------
-------------[] 
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 []\T1/pcr/m/n/9 e <- (function(x, y = 1, z) environment())(cos, "y", {cat(" HO
!\n"); pi+2})[] 
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 []        \T1/pcr/m/n/10 backtick = mode(expr) %in% c("call", "expression", "(
", "function"),[] 
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 []        \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "sh
owAttributes"),[] 
[145] [146]
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[]\T1/pcr/m/n/10 ..deparseOpts []\T1/ptm/m/n/10 is the [][][]\T1/pcr/m/n/10 cha
racter[][][] []\T1/ptm/m/n/10 vec-tor of pos-si-ble de-pars-ing op-tions used b
y
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[]\T1/ptm/m/n/10 Surround un-eval-u-ated ex-pres-sions, but not [][][]\T1/pcr/m
/n/10 formula[][][][]\T1/ptm/m/n/10 s, with
[147] [148] [149]
Underfull \hbox (badness 1603) in paragraph at lines 10261--10264
[]\T1/ptm/m/n/10 a nu-meric value. The mod-u-lus (ab-so-lute value) of the de-t
er-mi-nant if
[150] [151] [152] [153] [154] [155] [156]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 10726--10726
 []    \T1/pcr/m/n/10 z <- as.POSIXct(c("2016-12-31 23:59:59", "2017-01-01 00:0
0:01"))[] 
[157] [158]
Underfull \hbox (badness 1917) in paragraph at lines 10890--10895
[]\T1/pcr/m/n/10 provideDimnames(x) []\T1/ptm/m/n/10 pro-vides []\T1/pcr/m/n/10
 dimnames []\T1/ptm/m/n/10 where ``miss-ing'', such that its re-sult has
[159]
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 []\T1/pcr/m/n/9 strd(provideDimnames(N, base= list(letters[-(1:9)], tail(LETTE
RS)))) # recycling[] 
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 []\T1/pcr/m/n/9 strd(provideDimnames(A, base= list(c("AA","BB")))) # recycling
 on both levels[] 
[160] [161]
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[]\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of []\
T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . Cur-rently this is only used by
[162]
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 []\T1/pcr/m/n/9 ## From R 4.1.0 to 4.1.2, ...names() sometimes did not match n
ames(list(...));[] 
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 []\T1/pcr/m/n/9 chk.n2 <- function(...) stopifnot(identical(print(...names()),
 names(list(...))))[] 
[163] [164]
Underfull \hbox (badness 2828) in paragraph at lines 11271--11276
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
Underfull \hbox (badness 10000) in paragraph at lines 11271--11276
\T1/pcr/m/n/10 org / wiki / IEEE _ 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr
/m/n/10 https : / / en . wikipedia . org / wiki / IEEE _
Underfull \hbox (badness 10000) in paragraph at lines 11271--11276
\T1/pcr/m/n/10 754-[]2019$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
pcr/m/n/10 https :
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 []     \T1/pcr/m/n/10 control = c("keepNA", "keepInteger", "niceNames", "showA
ttributes"))[] 
[165]
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 []\T1/pcr/m/n/9 ## Write an ASCII version of the \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 base\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 function mean() to our temp file, ..[] 
[166] [167]
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 []\T1/pcr/m/n/9 aq <- transform(airquality, Month = factor(Month, labels = mon
th.abb[5:9])) 
[168] [169] [170]
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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
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[]\T1/pcr/m/n/10 duplicated(x, fromLast = TRUE) []\T1/ptm/m/n/10 is equiv-a-len
t to but faster than
[171] [172] [173]
Underfull \hbox (badness 10000) in paragraph at lines 11949--11952
[]\T1/ptm/m/n/10 Do not use []\T1/pcr/m/n/10 dyn.unload []\T1/ptm/m/n/10 on a D
LL loaded by [][][]\T1/pcr/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 : use
[174] [175] [176] [177] [178] [179]
Underfull \hbox (badness 2744) in paragraph at lines 12393--12395
[]\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma
y lead to con-fu-sion (see
[180]
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 []\T1/pcr/m/n/9 Encoding(x.) # "unknown" (UTF-8 loc.) | "latin1" (8859-1/CP-12
52 loc.) | ....[] 
[181] [182] [183]
Underfull \hbox (badness 5288) in paragraph at lines 12668--12670
[]\T1/ptm/m/n/10 The path to the de-fault browser. Used to set the de-fault val
ue of
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[]\T1/ptm/m/n/10 Optional. The path to Ghostscript, used by [][][]\T1/pcr/m/n/1
0 dev2bitmap[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bitmap[][][] []\T1/pt
m/m/n/10 and
[184]
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[]\T1/ptm/m/n/10 The path to HTML []\T1/pcr/m/n/10 tidy[]\T1/ptm/m/n/10 . Used 
by []\T1/pcr/m/n/10 R CMD check []\T1/ptm/m/n/10 if
Underfull \hbox (badness 10000) in paragraph at lines 12753--12755
[]\T1/ptm/m/n/10 (and more). Op-tional. Set-tings for
[185] [186] [187] [188]
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[]\T1/ptm/m/n/10 a frame in the call-ing list. Equiv-a-lent to giv-ing []\T1/pc
r/m/n/10 where []\T1/ptm/m/n/10 as
Underfull \hbox (badness 5970) in paragraph at lines 13046--13048
[]\T1/pcr/m/n/10 get0(): []\T1/ptm/m/n/10 The object---as from [][][]\T1/pcr/m/
n/10 get[][][](x, *)[]\T1/ptm/m/n/10 --- if []\T1/pcr/m/n/10 exists(x, *) []\T1
/ptm/m/n/10 is true, oth-er-wise
[189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13869--13869
 []\T1/pcr/m/n/9 ## "avector" := vector that keeps attributes.   Could provide 
a constructor[] 
[201] [202] [203] [204] [205] [206] [207] [208] [209] [210]
Underfull \hbox (badness 2253) in paragraph at lines 14597--14599
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
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[]\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m
a-tion is given about the
[211] [212]
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/pcr
/m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 R_LIBS []\T1/ptm/m/n/10 with
 []\T1/pcr/m/n/10 fsep =
[213] [214]
Underfull \hbox (badness 10000) in paragraph at lines 14924--14926
[]\T1/ptm/m/n/10 logical: should file dates be pre-served where pos-si-ble? See
[215] [216]
Underfull \hbox (badness 10000) in paragraph at lines 15045--15049
[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 unlink[][][][]\T1
/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 15056--15059
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / en . wikipedia .
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 []                     \T1/pcr/m/n/9 # |--> (TRUE,FALSE) : ok for A but not B 
as it exists already[] 
[217]
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 []\T1/pcr/m/n/10 dir.create(path, showWarnings = TRUE, recursive = FALSE, mode
 = "0777")[] 
[218]
Underfull \hbox (badness 10000) in paragraph at lines 15199--15202
[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.path[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 unlink[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 basename[][][][]\T1/
ptm/m/n/10 ,
Overfull \hbox (9.78043pt too wide) in paragraph at lines 15209--15209
 []\T1/pcr/m/n/9 f <- list.files(".", all.files = TRUE, full.names = TRUE, recu
rsive = TRUE)[] 
[219]
Underfull \hbox (badness 10000) in paragraph at lines 15275--15278
[]\T1/pcr/m/n/10 packageNotFoundError []\T1/ptm/m/n/10 cre-ates an er-ror con-d
i-tion ob-ject of class
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 []\T1/pcr/m/n/9 ## will not give an error, maybe a warning about *all* locatio
ns it is found:[] 
[220]
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 []\T1/pcr/m/n/10 findInterval(x, vec, rightmost.closed = FALSE, all.inside = F
ALSE, 
Underfull \hbox (badness 3965) in paragraph at lines 15353--15357
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[221] [222] [223]
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 []       \T1/pcr/m/n/10 .C(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING) 
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 [] \T1/pcr/m/n/10 .Fortran(.NAME, ..., NAOK = FALSE, DUP = TRUE, PACKAGE, ENCO
DING)[] 
[224] [225] [226] [227]
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 []\T1/pcr/m/n/9 ## formals returns a pairlist. Arguments with no default have 
type symbol (aka name).[] 
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 []\T1/pcr/m/n/9 ## formals returns NULL for primitive functions.  Use it in co
mbination with[] 
[228]
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[]\T1/ptm/m/n/10 Either a log-i-cal spec-i-fy-ing whether el-e-ments of a real 
or com-plex vec-
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\T1/ptm/m/n/10 tor should be en-coded in sci-en-tific for-mat, or an in-te-ger 
penalty (see
[229]
Underfull \hbox (badness 6944) in paragraph at lines 15946--15949
[][][]\T1/pcr/m/n/10 formatC[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 paste
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 as.character[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 sprintf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
rint[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 prettyNum[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 toString[][][][]\T1/ptm/m/n/10 ,
[230]
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 []\T1/pcr/m/n/9 z <- list(a = letters[1:3], b = (-pi+0i)^((-2:2)/2), c = c(1,1
0,100,1000),[] 
[231] [232]
Underfull \hbox (badness 10000) in paragraph at lines 16109--16111
[]\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 is used for ``pret-ti-fy-ing'' (p
os-si-bly for-mat-ted) num-bers, also in
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 []          \T1/pcr/m/n/10 decimal.mark = getOption("OutDec"), input.d.mark = 
decimal.mark,[] 
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 []\T1/pcr/m/n/10 .format.zeros(x, zero.print, nx = suppressWarnings(as.numeric
(x)),[] 
Underfull \hbox (badness 2790) in paragraph at lines 16142--16145
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
[]\T1/pcr/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for
[233]
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[]\T1/pcr/m/n/10 "f" []\T1/ptm/m/n/10 gives num-bers in the usual []\T1/pcr/m/n
/10 xxx.xxx []\T1/ptm/m/n/10 for-mat; []\T1/pcr/m/n/10 "e" []\T1/ptm/m/n/10 and
 []\T1/pcr/m/n/10 "E" []\T1/ptm/m/n/10 give
[234]
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[]\T1/ptm/m/n/10 This works via []\T1/pcr/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , 
which calls []\T1/pcr/m/n/10 .format.zeros(*,
Underfull \hbox (badness 10000) in paragraph at lines 16270--16275
[]\T1/ptm/m/n/10 For num-bers, []\T1/pcr/m/n/10 formatC() []\T1/ptm/m/n/10 call
s []\T1/pcr/m/n/10 prettyNum() []\T1/ptm/m/n/10 when needed which it-self calls
Underfull \hbox (badness 2426) in paragraph at lines 16276--16278
[]\T1/ptm/m/n/10 If you set []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 it over-ri
des the set-ting of []\T1/pcr/m/n/10 mode[]\T1/ptm/m/n/10 , so []\T1/pcr/m/n/10
 formatC(123.45, mode =
Underfull \hbox (badness 10000) in paragraph at lines 16287--16295
[]\T1/pcr/m/n/10 prettyNum []\T1/ptm/m/n/10 is the util-ity func-tion for pret-
ti-fy-ing []\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 x []\T1/ptm/m/n
/10 can be com-plex (or
[235] [236]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 16395--16395
 []\T1/pcr/m/n/9 fc <- formatC(1.234 + 10^(0:8), format = "fg", width = 11, big
.mark = "\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ")[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 16417--16417
 []\T1/pcr/m/n/9 doLC <- FALSE # <= R warns, so change to TRUE manually if you 
want see the effect[] 
Underfull \vbox (badness 10000) has occurred while \output is active [237]
[238] [239] [240] [241] [242] [243] [244] [245] [246] [247] [248]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 17251--17251
 []\T1/pcr/m/n/9 utils::tail(getLoadedDLLs(), 2) # the last 2 loaded ones, stil
l a DLLInfoList[] 
[249] [250]
Underfull \hbox (badness 2418) in paragraph at lines 17360--17364
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [
]\T1/pcr/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CallRoutine[]\T1/pt
m/m/n/10 ,
Underfull \hbox (badness 6510) in paragraph at lines 17367--17370
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 name []\T1/ptm/m/n/10 con-tains only one s
ym-bol name and []\T1/pcr/m/n/10 unlist []\T1/ptm/m/n/10 is []\T1/pcr/m/n/10 TR
UE[]\T1/ptm/m/n/10 , then the sin-gle
Underfull \hbox (badness 2326) in paragraph at lines 17402--17409
[][][]\T1/pcr/m/n/10 getDLLRegisteredRoutines[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 is.loaded[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .C[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Fortran[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 .External[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 .Call[][][][]
\T1/ptm/m/n/10 ,
[251] [252]
Underfull \hbox (badness 10000) in paragraph at lines 17509--17513
[]\T1/ptm/m/n/10 The spe-cial case []\T1/pcr/m/n/10 bindtextdomain(NULL) []\T1/
ptm/m/n/10 calls C level
Underfull \hbox (badness 3302) in paragraph at lines 17509--17513
[]\T1/pcr/m/n/10 textdomain(textdomain(NULL)) []\T1/ptm/m/n/10 for the pur-pose
 of flush-ing (i.e., emp-ty-ing) the
[253]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 17572--17572
 []\T1/pcr/m/n/9 if(is.na(thisLang) || !nzchar(thisLang)) thisLang <- "en" # "f
actory" default[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 17575--17575
 []\T1/pcr/m/n/9 gettext(enT, domain="R-stats")# "leeres Modell angegeben" (if 
translation works)[] 
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Overfull \hbox (15.18042pt too wide) in paragraph at lines 17606--17606
 []\T1/pcr/m/n/9 ## Here, we reset to the *original* setting before the full ex
ample started:[] 
[255] [256]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 17743--17743
 []\T1/pcr/m/n/10 grep(pattern, x, ignore.case = FALSE, perl = FALSE, value = F
ALSE, 
Underfull \hbox (badness 1867) in paragraph at lines 17771--17778
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[257] [258] [259] [260] [261]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 18089--18089
 []  \T1/pcr/m/n/9 nms <- nms[is.na(match(nms, c("F","T")))] # <-- work around 
"checking hack"[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 18118--18118
 []\T1/pcr/m/n/9 name.rex <- "(?<first>[[:upper:]][[:lower:]]+) (?<last>[[:uppe
r:]][[:lower:]]+)"[] 
Underfull \vbox (badness 10000) has occurred while \output is active [262]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 18174--18174
 []        \T1/pcr/m/n/10 value = FALSE, fixed = FALSE, all = FALSE, invert = F
ALSE)[] 
[263] [264] [265] [266] [267]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 18567--18567
 []\T1/pcr/m/n/9 (ii <- grouping(x <- c(1, 1, 3:1, 1:4, 3), y <- c(9, 9:1), z <
- c(2, 1:9))) 
[268]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 18632--18632
 []\T1/pcr/m/n/9 z <- gzcon(url("https://www.stats.ox.ac.uk/pub/datasets/csb/ch
12.dat.gz"))[] 
[269] [270] [271]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 18845--18845
 []\T1/pcr/m/n/10 iconv(x, from = "", to = "", sub = NA, mark = TRUE, toRaw = F
ALSE) 
[272] [273] [274] [275]
Underfull \hbox (badness 1163) in paragraph at lines 19189--19191
[]\T1/ptm/m/n/10 The ICU user guide chap-ter on col-la-tion ([][]$\T1/pcr/m/n/1
0 https : / / unicode-[]org . github . io / icu /
[276]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19197--19197
 []\T1/pcr/m/n/9 ## As we don\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 t know the current s
ettings, we can only reset to the default.[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 19227--19227
 []\T1/pcr/m/n/10 identical(x, y, num.eq = TRUE, single.NA = TRUE, attrib.as.se
t = TRUE, 
[277]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 19321--19321
 []              \T1/pcr/m/n/10 num.eq = FALSE, single.NA = FALSE, attrib.as.se
t = FALSE,[] 
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 []              \T1/pcr/m/n/10 ignore.bytecode = FALSE, ignore.environment = F
ALSE,[] 
[278]
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 []\T1/pcr/m/n/9 ### For functions ("closure"s): ------------------------------
----------------[] 
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 []\T1/pcr/m/n/9 identical(f, g)                        # TRUE, as bytecode is 
ignored by default[] 
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 []\T1/pcr/m/n/9 ## GLM families contain several functions, some of which share
 an environment:[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19390--19390
 []\T1/pcr/m/n/9 op <- options(keep.source = TRUE) # and so, these have differi
ng "srcref" :[] 
[279] [280]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 19517--19517
 []\T1/pcr/m/n/9 ## This is a (not atypical) case where it is better *not* to u
se ifelse(),[] 
[281]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19525--19525
 []\T1/pcr/m/n/9 ## example of different return modes (and \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 test\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 alone determining length):[] 
[282] [283]
Underfull \hbox (badness 10000) in paragraph at lines 19730--19732
[]\T1/ptm/m/n/10 how some er-rors are han-dled and re-ported, e.g. see [][][]\T
1/pcr/m/n/10 stop[][][] []\T1/ptm/m/n/10 and
[284] [285] [286] [287] [288]
Underfull \hbox (badness 10000) in paragraph at lines 20070--20076
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[]\T1/ptm/m/n/10 Also avail-able at [][]$\T1/pcr/m/n/10 https : / / docs . orac
le . com / cd / E19957-[]01 / 806-[]3568 / ncg _
[289] [290] [291]
Underfull \hbox (badness 4699) in paragraph at lines 20315--20318
[]\T1/pcr/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty
pes ([]\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 ,
[292] [293]
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 []\T1/pcr/m/n/10 ISOdate(year, month, day, hour = 12, min = 0, sec = 0, tz = "
GMT")[] 
[294] [295] [296]
Underfull \hbox (badness 4739) in paragraph at lines 20578--20580
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[297]
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 []\T1/pcr/m/n/9 isSymmetric(D3)                         # FALSE (as row and co
lumn names differ)[] 
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 []\T1/pcr/m/n/9 isSymmetric(D3, check.attributes=FALSE) # TRUE  (as names are 
not checked)[] 
[298] [299]
Underfull \hbox (badness 2961) in paragraph at lines 20805--20808
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
[300] [301] [302] [303] [304] [305] [306]
Underfull \hbox (badness 1975) in paragraph at lines 21246--21249
[]\T1/ptm/m/n/10 The value of the in-ter-nal eval-u-a-tion of a top-level \T1/p
hv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sion is al-ways as-signed to
[307] [308] [309] [310] [311] [312]
Underfull \hbox (badness 1077) in paragraph at lines 21662--21667
[]\T1/ptm/m/n/10 In late 2017 a []\T1/pcr/m/n/10 libcurl []\T1/ptm/m/n/10 in-st
al-la-tion was seen di-vided into two li-braries, []\T1/pcr/m/n/10 libcurl []\T
1/ptm/m/n/10 and
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[][][]$\T1/pcr/m/n/10 https : / / curl . se / docs / sslcerts . html$[][] \T1/p
tm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / curl . se / docs /
[313]
Underfull \hbox (badness 1112) in paragraph at lines 21749--21758
[]\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the
 en-vi-ron-ment vari-ables []\T1/pcr/m/n/10 R_LIBS[]\T1/ptm/m/n/10 ,
[314]
Underfull \hbox (badness 2970) in paragraph at lines 21807--21810
[]\T1/pcr/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/pcr/m/n/10 C:\Us
ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a
Underfull \hbox (badness 2951) in paragraph at lines 21807--21810
\T1/ptm/m/n/10 hid-den di-rec-tory and may not be viewed by some soft-ware. It 
may be opened by
[315] [316]
Underfull \hbox (badness 10000) in paragraph at lines 21920--21924
[]\T1/ptm/m/n/10 To sup-press mes-sages dur-ing the load-ing of pack-ages use
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[][][]\T1/pcr/m/n/10 suppressPackageStartupMessages[][][][]\T1/ptm/m/n/10 : thi
s will sup-press all mes-sages from \T1/phv/m/n/10 R \T1/ptm/m/n/10 it-self
Underfull \hbox (badness 1221) in paragraph at lines 21925--21932
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 is called with no
 []\T1/pcr/m/n/10 package []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 help []\T1/ptm/m
/n/10 ar-gu-ment, it lists all avail-able pack-
[317] [318]
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[][][]\T1/pcr/m/n/10 attach[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 detach
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 search[][][][]\T1/ptm/m/n/10 , []
[][]\T1/pcr/m/n/10 objects[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 autoloa
d[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 requireNamespace[][][][]\T1/ptm/
m/n/10 ,
[319]
Underfull \hbox (badness 10000) in paragraph at lines 22175--22179
[]\T1/ptm/m/n/10 Do not use [][][]\T1/pcr/m/n/10 dyn.unload[][][] []\T1/ptm/m/n
/10 on a DLL loaded by []\T1/pcr/m/n/10 library.dynam[]\T1/ptm/m/n/10 : use
[320]
Underfull \hbox (badness 5161) in paragraph at lines 22245--22250
[]\T1/ptm/m/n/10 A small num-ber of files (some of the API header files) are di
s-tributed un-der the
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\T1/ptm/m/n/10 LESSER GNU GEN-ERAL PUB-LIC LI-CENSE, ver-sion 2.1 or later. A c
opy of
Underfull \hbox (badness 5133) in paragraph at lines 22245--22250
\T1/ptm/m/n/10 this li-cense is in file `\T1/pcr/m/n/10 $R_SHARE_DIR/licenses/L
GPL-2.1\T1/ptm/m/n/10 ' and can be viewed
Underfull \hbox (badness 10000) in paragraph at lines 22245--22250
\T1/ptm/m/n/10 by []\T1/pcr/m/n/10 RShowDoc("LGPL-2.1")[]\T1/ptm/m/n/10 . Ver-s
ion 3 of the li-cense can be dis-played by
[321] [322] [323]
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 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 22417--22417
 []           \T1/pcr/m/n/10 ignore.case = FALSE, include.dirs = FALSE, no.. = 
FALSE)[] 
[324]
Underfull \hbox (badness 3343) in paragraph at lines 22478--22482
[][][]\T1/pcr/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fil
e.access[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 files[][][] []\T1/ptm/
m/n/10 for many more file han-dling func-tions and
[325] [326]
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 []          \T1/pcr/m/n/9 identical(L$b, e$b)) # "$" working for environments 
as for lists[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 22627--22627
 []              \T1/pcr/m/n/9 df = data.frame(x = rnorm(20), y = rbinom(20, 1,
 prob = 0.2))),[] 
[327] [328]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 22738--22738
 []\T1/pcr/m/n/9 ## This however annihilates all objects in .GlobalEnv with the
 same names ![] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 22741--22741
 []\T1/pcr/m/n/9 attach("all.rda") # safer and will warn about masked objects w
/ same name in .GlobalEnv[] 
Underfull \hbox (badness 6380) in paragraph at lines 22788--22796
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-
[329] [330]
Underfull \hbox (badness 2564) in paragraph at lines 22891--22894
[]\T1/ptm/m/n/10 Almost all the out-put rou-tines used by \T1/phv/m/n/10 R \T1/
ptm/m/n/10 it-self un-der Win-dows ig-nore the set-ting of
Overfull \hbox (4.38043pt too wide) in paragraph at lines 22932--22932
 []\T1/pcr/m/n/9 Sys.setlocale("LC_TIME", "de_DE.UTF-8")  # Linux, macOS, other
 Unix-alikes[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 22936--22936
 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # in C_TIME locale \T
S1/pcr/m/n/9 '\T1/pcr/m/n/9 cT\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 ; typically German
[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 22940--22940
 []\T1/pcr/m/n/9 c(m = months(then), wd = weekdays(then)) # "standard" (still p
latform specific ?)[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 22947--22947
 []\T1/pcr/m/n/9 ## Not run: Sys.setlocale("LC_COLLATE", "C")   # turn off loca
le-specific sorting,[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 22949--22949
 []\T1/pcr/m/n/9 Sys.setenv("LANGUAGE" = "es") # set the language for error/war
ning messages[] 
[331]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 22957--22957
 [] \T1/pcr/m/n/9 sg <- matrix(unlist(strsplit(strsplit(Sys.getlocale(), sep)[[
1]], "=")), nrow=2)[] 
[332] [333]
Underfull \hbox (badness 1400) in paragraph at lines 23118--23122
[][][]\T1/pcr/m/n/10 raw[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logical[]
[][] []\T1/ptm/m/n/10 or `number-like' vec-tors (i.e., of types [][][]\T1/pcr/m
/n/10 double[][][] []\T1/ptm/m/n/10 (class
[334] [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 23960--23960
 []\T1/pcr/m/n/9 zN <- c(complex(real = NA , imaginary =  r ), complex(real =  
r , imaginary = NA ),[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 23961--23961
 []        \T1/pcr/m/n/9 complex(real =  r , imaginary = NaN), complex(real = N
aN, imaginary =  r ))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 23964--23964
 []\T1/pcr/m/n/9 zM ##--> many "NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s" (= 1) and th
e four non-NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s (3 different ones, at 7,9,10)[] 
[346] [347]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 24061--24061
 []\T1/pcr/m/n/9 match.arg(c("a", ""),  c("", NA, "bb", "abc"), several.ok=TRUE
) # |-->  "abc"[] 
Underfull \hbox (badness 1655) in paragraph at lines 24095--24099
[]\T1/ptm/m/n/10 `function' on this help page means an in-ter-preted func-tion 
(also known as a `clo-sure'):
[348] [349] [350] [351]
Underfull \hbox (badness 2277) in paragraph at lines 24346--24349
[]\T1/ptm/m/n/10 For ma-trix \T1/ptm/m/it/10 cross\T1/ptm/m/n/10 products, [][]
[]\T1/pcr/m/n/10 crossprod[][][]() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 tcross
prod() []\T1/ptm/m/n/10 are typ-i-cally prefer-able.
[352] [353] [354] [355] [356] [357] [358] [359] [360]
Underfull \hbox (badness 1484) in paragraph at lines 24933--24941
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
Underfull \hbox (badness 1152) in paragraph at lines 24933--24941
\T1/ptm/m/n/10 changed to al-low more (up to 3Gb). See [][]$\T1/pcr/m/n/10 http
s : / / docs . microsoft . com / en-[]gb /
[361]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 25007--25007
 []      \T1/pcr/m/n/10 by.x = by, by.y = by, all = FALSE, all.x = all, all.y =
 all,[] 
[362] [363] [364] [365] [366] [367] [368] [369]
Underfull \hbox (badness 1448) in paragraph at lines 25554--25562
[]\T1/pcr/m/n/10 anyNA(recursive = FALSE) []\T1/ptm/m/n/10 works the same way a
s []\T1/pcr/m/n/10 is.na[]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 anyNA(recursive =
[370]
Underfull \hbox (badness 3849) in paragraph at lines 25669--25674
[]\T1/pcr/m/n/10 as.name []\T1/ptm/m/n/10 first co-erces its ar-gu-ment in-ter-
nally to a char-ac-ter vec-tor (so meth-ods for
[371]
Underfull \hbox (badness 2165) in paragraph at lines 25746--25752
[]\T1/ptm/m/n/10 For an [][][]\T1/pcr/m/n/10 environment[][][] env[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r
e-spond-ing list,
Underfull \hbox (badness 1199) in paragraph at lines 25746--25752
\T1/ptm/m/n/10 i.e., []\T1/pcr/m/n/10 names(as.list(env, all.names = TRUE)) []\
T1/ptm/m/n/10 which are also given by [][][]\T1/pcr/m/n/10 ls[][][](env,
Underfull \hbox (badness 3148) in paragraph at lines 25746--25752
\T1/pcr/m/n/10 all.names = TRUE, sorted = FALSE)[]\T1/ptm/m/n/10 . If the en-vi
-ron-ment is used as a hash ta-ble,
[372] [373] [374]
Underfull \hbox (badness 2237) in paragraph at lines 25909--25911
[]\T1/ptm/m/n/10 character string: par-tial match-ing to one of []\T1/pcr/m/n/1
0 c("bytes", "chars",
[375] [376] [377]
Underfull \hbox (badness 6188) in paragraph at lines 26136--26139
[]\T1/ptm/m/n/10 optional [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 e
ven-tu-ally to be passed to []\T1/pcr/m/n/10 print()[]\T1/ptm/m/n/10 , used by
[378] [379] [380]
Underfull \hbox (badness 1521) in paragraph at lines 26321--26335
\T1/ptm/m/n/10 tion []\T1/pcr/m/n/10 GetFinalPathNameByHandle []\T1/ptm/m/n/10 
and in case of an er-ror (such as in-suf-fi-cient per-
[381] [382] [383] [384]
Underfull \hbox (badness 2197) in paragraph at lines 26635--26639
[]\T1/ptm/m/n/10 Loading a names-pace should where pos-si-ble be silent, with s
tartup mes-sages given by
Underfull \hbox (badness 4048) in paragraph at lines 26635--26639
[]\T1/pcr/m/n/10 .onAttach[]\T1/ptm/m/n/10 . These mes-sages (and any es-sen-ti
al ones from []\T1/pcr/m/n/10 .onLoad[]\T1/ptm/m/n/10 ) should use
[385]
Underfull \hbox (badness 2846) in paragraph at lines 26649--26653
[]\T1/ptm/m/n/10 Uses of []\T1/pcr/m/n/10 library []\T1/ptm/m/n/10 with ar-gu-m
ent []\T1/pcr/m/n/10 help []\T1/ptm/m/n/10 to dis-play ba-sic in-for-ma-tion ab
out the pack-
Underfull \hbox (badness 1990) in paragraph at lines 26649--26653
\T1/ptm/m/n/10 age should use []\T1/pcr/m/n/10 format []\T1/ptm/m/n/10 on the c
om-puted pack-age in-for-ma-tion ob-ject and pass this to
Overfull \hbox (12.78088pt too wide) in paragraph at lines 26691--26691
 []\T1/pcr/m/n/10 attachNamespace(ns, pos = 2L, depends = NULL, exclude, includ
e.only) 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 26695--26695
 []              \T1/pcr/m/n/10 keep.parse.data = getOption("keep.parse.data.pk
gs"))[] 
[386]
Underfull \hbox (badness 10000) in paragraph at lines 26744--26750
[]\T1/pcr/m/n/10 loadNamespace []\T1/ptm/m/n/10 does not at-tach the name space
 it loads to the search path.
Underfull \hbox (badness 1168) in paragraph at lines 26744--26750
[]\T1/pcr/m/n/10 attachNamespace []\T1/ptm/m/n/10 can be used to at-tach a fram
e con-tain-ing the ex-ported val-ues of a
Underfull \hbox (badness 10000) in paragraph at lines 26757--26759
[]\T1/pcr/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but
 more ef-fi-cient than []\T1/pcr/m/n/10 pkg %in%
[387]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 26824--26824
 [] \T1/pcr/m/n/9 ## The string "foo" and the symbol \TS1/pcr/m/n/9 '\T1/pcr/m/
n/9 foo\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 can be used interchangably here:[] 
[388] [389] [390]
Underfull \hbox (badness 8189) in paragraph at lines 27019--27025
[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 is.numeric []\T1/ptm/
m/n/10 re-turns []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 if its ar-gu-ment is of 
[][]mode[][][]
[391] [392] [393]
Underfull \hbox (badness 2591) in paragraph at lines 27245--27253
\T1/ptm/m/n/10 ject as ob-tained by [][][]\T1/pcr/m/n/10 R.version[][][][]\T1/p
tm/m/n/10 . For []\T1/pcr/m/n/10 as.numeric_version []\T1/ptm/m/n/10 and
[394] [395] [396] [397]
Underfull \hbox (badness 1603) in paragraph at lines 27527--27529
[]\T1/ptm/m/n/10 date ob-jects or char-ac-ter vec-tors. (Char-ac-ter vec-tors a
re con-verted by
[398] [399]
Underfull \hbox (badness 1210) in paragraph at lines 27654--27662
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-
[400] [401]
Underfull \hbox (badness 3271) in paragraph at lines 27874--27877
[]\T1/ptm/m/n/10 default PDF viewer. The de-fault is set from the en-vi-ron-men
t vari-able
[402] [403] [404]
Underfull \hbox (badness 3138) in paragraph at lines 28180--28186
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/pcr/
m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 28180--28186
\T1/ptm/m/n/10 e.g. the de-fault `[]\T1/pcr/m/n/10 "https://bioconductor.org"[]
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 2088) in paragraph at lines 28180--28186
\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 "https://bioconductor.statistik.tu-dortmund.de
"[]\T1/ptm/m/n/10 '. Can be set by
[405]
Underfull \hbox (badness 1194) in paragraph at lines 28193--28196
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/pcr/m/n/10 create.post[
][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/pcr/m/n/10 bug.report[][][] []\T1/pt
m/m/n/10 and
Underfull \hbox (badness 1389) in paragraph at lines 28219--28221
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
Underfull \hbox (badness 10000) in paragraph at lines 28246--28252
[]\T1/ptm/m/n/10 logical: should per-directory pack-age lock-ing be used by
Underfull \hbox (badness 3826) in paragraph at lines 28261--28266
[]\T1/ptm/m/n/10 Used by [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 (and in-di-rectly
[406]
Underfull \hbox (badness 1009) in paragraph at lines 28279--28282
[]\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/pcr/m/n/10 create.p
ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/pcr/m/n/10 bug.report[][][] []\T
1/ptm/m/n/10 and
Underfull \hbox (badness 10000) in paragraph at lines 28295--28298
[]\T1/ptm/m/n/10 The de-fault type of pack-ages to be down-loaded and in-stalle
d -- see
Underfull \hbox (badness 10000) in paragraph at lines 28303--28309
[]\T1/pcr/m/n/10 "source" []\T1/ptm/m/n/10 (the de-fault ex-cept un-der a CRAN 
ma-cOS
Underfull \hbox (badness 10000) in paragraph at lines 28303--28309
\T1/ptm/m/n/10 build), []\T1/pcr/m/n/10 "mac.binary" []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 "both" []\T1/ptm/m/n/10 (the de-fault for CRAN ma-cOS
Underfull \hbox (badness 10000) in paragraph at lines 28303--28309
\T1/ptm/m/n/10 builds). ([]\T1/pcr/m/n/10 "mac.binary.el-capitan"[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 "mac.binary.mavericks"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 5091) in paragraph at lines 28303--28309
[]\T1/pcr/m/n/10 "mac.binary.leopard" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "ma
c.binary.universal" []\T1/ptm/m/n/10 are no longer
[407] [408] [409] [410] [411]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28675--28675
 []\T1/pcr/m/n/9 system.time(o <- sort.list(xx, method = "radix")) # 0.007 sec,
 300X faster[] 
Underfull \hbox (badness 10000) in paragraph at lines 28688--28692
[]\T1/ptm/m/n/10 where el-e-ment []\T1/pcr/m/n/10 A[c(arrayindex.x, arrayindex.
y)] = FUN(X[arrayindex.x],
[412] [413]
Underfull \hbox (badness 1210) in paragraph at lines 28835--28838
[]\T1/pcr/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 str2la
ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/pcr/m/n/10 parse(tex
t=s,
[414] [415] [416]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 29031--29031
 []\T1/pcr/m/n/9 tryCatch(parse(text = txt, srcfile = sf), error = function(e) 
"Syntax error.")[] 
[417]
Underfull \hbox (badness 7133) in paragraph at lines 29117--29123
[][][]\T1/pcr/m/n/10 toString[][][] []\T1/ptm/m/n/10 typ-i-cally calls []\T1/pc
r/m/n/10 paste(*, collapse=", ")[]\T1/ptm/m/n/10 . String ma-nip-u-la-tion with
Overfull \hbox (42.18039pt too wide) in paragraph at lines 29139--29139
 []\T1/pcr/m/n/9 ## Notice that the recycling rules make every input as long as
 the longest input.[] 
[418]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 29151--29151
 []\T1/pcr/m/n/9 paste("1st", "2nd", "3rd", collapse = ", ") # probably not wha
t you wanted[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 29164--29164
 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 recycle0 = TRUE\TS1/pcr/m/n/9
 ' \T1/pcr/m/n/9 allows more vectorized behaviour, i.e. zero-length recycling :
[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 29168--29168
 []\T1/pcr/m/n/9 paste("The value is", val[valid], "-- good: empty!", recycle0=
TRUE) # -> character(0)[] 
[419] [420] [421]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 29356--29356
 []\T1/pcr/m/n/9 mtcars |> subset(cyl == 4) |> nrow()  # same as nrow(subset(mt
cars, cyl == 4))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 29374--29374
 []\T1/pcr/m/n/9 stop() |> (function(...) {})() # stop() is not used on RHS so 
is not evaluated[] 
[422]
Underfull \hbox (badness 1360) in paragraph at lines 29429--29433
[]\T1/ptm/m/n/10 All other []\T1/pcr/m/n/10 type[]\T1/ptm/m/n/10 s give a warn-
ing or an er-ror; us-ing, e.g., []\T1/pcr/m/n/10 type =
[423] [424] [425] [426]
Underfull \hbox (badness 2277) in paragraph at lines 29741--29746
\T1/ptm/m/n/10 i.e., strictly in-clude the bounds of []\T1/pcr/m/n/10 x[]\T1/pt
m/m/n/10 . New from \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0, al-low-ing
[427] [428]
Underfull \hbox (badness 1701) in paragraph at lines 29857--29861
[]\T1/ptm/m/n/10 This func-tion is al-most never used: []\TS1/cmtt/m/n/10 `\T1/
pcr/m/n/10 name\TS1/cmtt/m/n/10 ` []\T1/ptm/m/n/10 or, more care-fully, [][][]\
T1/pcr/m/n/10 get[][][](name, envir =
[429]
Underfull \hbox (badness 1796) in paragraph at lines 29925--29928
[]\T1/ptm/m/n/10 character string (or []\T1/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 ) i
n-di-cat-ing [][][]\T1/pcr/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed 
out-put, see
[430] [431] [432] [433]
Underfull \hbox (badness 10000) in paragraph at lines 30129--30132
[]\T1/ptm/m/n/10 Option []\T1/pcr/m/n/10 width []\T1/ptm/m/n/10 con-trols the p
rint-ing of vec-tors, ma-tri-ces and ar-rays, and op-tion
[434] [435] [436] [437] [438] [439] [440] [441]
Underfull \hbox (badness 2961) in paragraph at lines 30675--30678
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/pcr/m/n/10 https : / / n
etlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / /
[442] [443]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 30824--30824
 []           \T1/pcr/m/n/9 c1 = rep(c(1,0,0), 2), c2 = rep(c(0,1,0), 2), c3 = 
rep(c(0,0,1),2))[] 
[444] [445] [446] [447]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 31117--31117
 []\T1/pcr/m/n/9 (nn <- "\u0126\u0119\u1114\u022d\u2001\u03e2\u0954\u0f3f\u13d3
\u147b\u203c")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 31128--31128
 []\T1/pcr/m/n/9 n2 <- "\U0126\U0119\U1114\U022d\U2001\U03e2\U0954\U0f3f\U13d3\
U147b\U203c"[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 31134--31134
 []\T1/pcr/m/n/9 ## https://cran.r-project.org/doc/manuals/r-release/R-lang.htm
l#Literal-constants[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 31140--31140
 []\T1/pcr/m/n/9 ## nul characters (for terminating strings in C) are not allow
ed (parse errors)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [448]
[449]
Underfull \hbox (badness 7415) in paragraph at lines 31237--31243
[]\T1/ptm/m/n/10 Do \T1/ptm/m/it/10 not \T1/ptm/m/n/10 use []\T1/pcr/m/n/10 R.v
ersion$os []\T1/ptm/m/n/10 to test the plat-form the code is run-ning on: use
Overfull \hbox (42.18039pt too wide) in paragraph at lines 31261--31261
 []\T1/pcr/m/n/9 mtext(R.version.string, side = 1, line = 4, adj = 1) # a usefu
l bottom-right note[] 
[450]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 31307--31307
 []\T1/pcr/m/n/10 set.seed(seed, kind = NULL, normal.kind = NULL, sample.kind =
 NULL)[] 
[451] [452]
Underfull \hbox (badness 3713) in paragraph at lines 31452--31463
[]\T1/pcr/m/n/10 normal.kind []\T1/ptm/m/n/10 can be []\T1/pcr/m/n/10 "Kinderma
n-Ramage"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Buggy Kinderman-Ramage" []\T1/ptm
/m/n/10 (not
[453]
Underfull \hbox (badness 1248) in paragraph at lines 31604--31611
\T1/ptm/m/n/10 uni-form pseudo-random num-ber gen-er-a-tor, \T1/ptm/m/it/10 ACM
 Trans-ac-tions on Mod-el-ing and Com-puter
Underfull \hbox (badness 10000) in paragraph at lines 31604--31611
\T1/ptm/m/n/10 Now see [][]$\T1/pcr/m/n/10 http : / / www . math . sci . hirosh
ima-[]u . ac . jp / ~m-[]mat / MT / VERSIONS /
[454] [455]
Underfull \hbox (badness 1533) in paragraph at lines 31722--31725
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[456] [457]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 31867--31867
 []     \T1/pcr/m/n/10 ties.method = c("average", "first", "last", "random", "m
ax", "min"))[] 
[458]
Underfull \hbox (badness 1038) in paragraph at lines 31885--31896
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/pcr/m/n/10 N
A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[459] [460]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 32029--32029
 []\T1/pcr/m/n/9 rapply(X, function(x) x, how = "replace") -> X.; stopifnot(ide
ntical(X, X.))[] 
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 []\T1/pcr/m/n/9 rapply(X, deparse, control = "all") # passing extras. argument
 of deparse()[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "list")[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 rapply(X, nchar, classes = "character",                      h
ow = "unlist")[] 
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 []\T1/pcr/m/n/9 rapply(E, nchar, classes = "character", deflt = NA_integer_, h
ow = "unlist")[] 
[461] [462] [463] [464] [465]
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 []\T1/pcr/m/n/9 ## Bit representation  [ sign | exponent | mantissa ] of doubl
e prec numbers :[] 
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 []\T1/pcr/m/n/9 bitC <- function(x) noquote(vapply(as.double(x), function(x) {
 # split one double[] 
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 []\T1/pcr/m/n/9 d2bI <- function(x) vapply(as.double(x), function(x) intToBits
(numToInts(x)), raw(64L))[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 32362--32362
 []\T1/pcr/m/n/9 d2b  <- function(x) vapply(as.double(x), function(x)          
 numToBits(x) , raw(64L))[] 
[466]
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[]\T1/ptm/m/n/10 Either an ob-ject whose mode will give the mode of the vec-tor
 to
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\T1/ptm/m/n/10 be read, or a char-ac-ter vec-tor of length one de-scrib-ing the
 mode:
Underfull \hbox (badness 1824) in paragraph at lines 32457--32462
\T1/ptm/m/n/10 one of []\T1/pcr/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/pcr/m/
n/10 "double"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 "int"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/
10 ,
[467] [468] [469] [470] [471] [472] [473] [474]
Underfull \hbox (badness 2080) in paragraph at lines 32997--33007
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 infoRDS[]\T1/ptm/m/n/10 , an \T1/phv/m/n/
10 R \T1/ptm/m/n/10 list with el-e-ments []\T1/pcr/m/n/10 version []\T1/ptm/m/n
/10 (ver-sion num-ber, cur-rently 2 or 3),
[475]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 33031--33031
 []\T1/pcr/m/n/9 ## or examine the object via a connection, which will be opene
d as needed.[] 
[476] [477] [478] [479] [480] [481] [482]
Underfull \hbox (badness 7558) in paragraph at lines 33551--33555
[]\T1/pcr/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 gregexpr []\T1/p
tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1968) in paragraph at lines 33561--33563
[]\T1/ptm/m/n/10 This help page is based on the TRE doc-u-men-ta-tion and the P
OSIX stan-dard, and the
Underfull \hbox (badness 10000) in paragraph at lines 33572--33574
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/pcr/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs /
Underfull \hbox (badness 1975) in paragraph at lines 33575--33579
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/pcr/m
/n/10 https : / / www .
[483] [484]
Underfull \vbox (badness 10000) has occurred while \output is active [485]
[486] [487] [488]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 33946--33946
 []\T1/pcr/m/n/9 rep(1:4, each = 2, times = 3)         # length 24, 3 complete 
replications[] 
[489]
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[][][]\T1/pcr/m/n/10 TRUE[][][] [][]FALSE[][][] [][]NULL[][][] [][]Inf[][][] []
[]NaN[][][] [][]NA[][][] [][]NA_integer_[][][] [][]NA_real_[][][] [][]NA_comple
x_[][][]
[490] [491] [492]
Underfull \hbox (badness 2302) in paragraph at lines 34245--34250
[]\T1/pcr/m/n/10 signif []\T1/ptm/m/n/10 rounds the val-ues in its first ar-gu-
ment to the spec-i-fied num-ber of \T1/ptm/m/it/10 sig-nif-i-cant
Underfull \hbox (badness 1824) in paragraph at lines 34245--34250
\T1/ptm/m/n/10 dig-its. Hence, for []\T1/pcr/m/n/10 numeric x[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 signif(x, dig) []\T1/ptm/m/n/10 is the same as []\T1/pcr/m/n/
10 round(x, dig -
[493] [494]
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"))[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
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 []      \T1/pcr/m/n/10 units = c("secs", "mins", "hours", "days", "months", "y
ears"),[] 
[495] [496] [497] [498] [499] [500] [501]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 34836--34836
 []           \T1/pcr/m/n/10 useHash = (n > 1e+07 && !replace && is.null(prob) 
&& size <= n/2))[] 
[502] [503] [504] [505] [506] [507]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 35273--35273
 []     \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, skipNul =
 FALSE)[] 
[508] [509]
Underfull \hbox (badness 1158) in paragraph at lines 35377--35382
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 
1, it ap-plies to all fields; oth-er-wise, if
[510] [511]
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 []\T1/pcr/m/n/9 cat("TITLE extra line", "2 3 5 7", "11 13 17", file = "ex.data
", sep = "\n") 
[512] [513] [514]
Underfull \hbox (badness 4752) in paragraph at lines 35822--35825
[]\T1/ptm/m/n/10 The fourth form gen-er-ates the in-te-ger se-quence []\T1/pcr/
m/n/10 1, 2, ..., length(along.with)[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 5563) in paragraph at lines 35826--35832
[]\T1/ptm/m/n/10 The fifth form gen-er-ates the se-quence []\T1/pcr/m/n/10 1, 2
, ..., length(from) []\T1/ptm/m/n/10 (as if ar-gu-ment
[515] [516] [517] [518] [519] [520] [521] [522] [523]
Underfull \hbox (badness 6094) in paragraph at lines 36412--36416
[]\T1/pcr/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in-
te-ger con-nec-tion de-scrip-tors for use
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\T1/ptm/m/n/10 with []\T1/pcr/m/n/10 getConnection[]\T1/ptm/m/n/10 , cor-re-spo
nd-ing to the row names of the ta-ble re-turned by
[524] [525]
Underfull \hbox (badness 3826) in paragraph at lines 36503--36514
[]\T1/ptm/m/n/10 In Win-dows, com-mand line in-ter-pre-ta-tion is done by the a
p-pli-ca-tion as well as the
Underfull \hbox (badness 3492) in paragraph at lines 36503--36514
\T1/ptm/m/n/10 shell. It may de-pend on the com-piler used: Mi-crosoft's rules 
for the C run-time
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\T1/ptm/m/n/10 are given at [][]$\T1/pcr/m/n/10 https : / / learn . microsoft .
 com / en-[]us / cpp / c-[]language /
Underfull \hbox (badness 1635) in paragraph at lines 36503--36514
\T1/pcr/m/n/10 parsing-[]c-[]command-[]line-[]arguments ? view = msvc-[]160$[][
]\T1/ptm/m/n/10 . It may de-pend on the
[526] [527] [528] [529] [530] [531] [532] [533]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 37057--37057
 []         \T1/pcr/m/n/10 method = c("auto", "shell", "quick", "radix"), index
.return = FALSE)[] 
[534] [535] [536] [537]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 37309--37309
 []              \T1/pcr/m/n/10 print. = TRUE, echo = TRUE, max.deparse.length 
= Inf,[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 37311--37311
 []              \T1/pcr/m/n/10 deparseCtrl = c("keepInteger", "showAttributes"
, "keepNA"),[] 
Underfull \hbox (badness 4954) in paragraph at lines 37354--37360
[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 vec-tor, passed as []\T1/
pcr/m/n/10 control []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 deparse[][][]()[]\T
1/ptm/m/n/10 , see also
Underfull \hbox (badness 5050) in paragraph at lines 37354--37360
[][][]\T1/pcr/m/n/10 .deparseOpts[][][][]\T1/ptm/m/n/10 . In \T1/phv/m/n/10 R \
T1/ptm/m/n/10 ver-sion <= 3.3.x, this was hard-coded to
[538] [539]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 37465--37465
 []\T1/pcr/m/n/9 ## (all should look "as if on top level", e.g. non-assignments
 should print:)[] 
[540] [541] [542] [543] [544]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 37808--37808
 []\T1/pcr/m/n/9 ### Calculate \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 z-scores\TS1/pcr/m
/n/9 ' \T1/pcr/m/n/9 by group (standardize to mean zero, variance one)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 37823--37823
 []\T1/pcr/m/n/9 ## Notice that assignment form is not used since a variable is
 being added[] 
[545] [546] [547]
Underfull \hbox (badness 10000) in paragraph at lines 38048--38050
[][][]$\T1/pcr/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions /
[548] [549] [550]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 38275--38275
 []\T1/pcr/m/n/10 srcfile(filename, encoding = getOption("encoding"), Enc = "un
known") 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 38276--38276
 []\T1/pcr/m/n/10 srcfilecopy(filename, lines, timestamp = Sys.time(), isFile =
 FALSE)[] 
[551] [552] [553] [554] [555]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 38607--38607
 []\T1/pcr/m/n/9 startsWith(search(), "package:") # typically at least two FALS
E, nowadays often three 
[556]
Underfull \hbox (badness 6110) in paragraph at lines 38703--38713
[]\T1/ptm/m/n/10 A func-tion []\T1/pcr/m/n/10 .First []\T1/ptm/m/n/10 (and [][]
[]\T1/pcr/m/n/10 .Last[][][][]\T1/ptm/m/n/10 ) can be de-fined in ap-pro-pri-at
e `\T1/pcr/m/n/10 .Rprofile\T1/ptm/m/n/10 ' or
Underfull \hbox (badness 2635) in paragraph at lines 38703--38713
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' files or have been
 saved in `\T1/pcr/m/n/10 .RData\T1/ptm/m/n/10 '. If you want a dif-fer-ent
Underfull \hbox (badness 1237) in paragraph at lines 38703--38713
\T1/ptm/m/n/10 set of pack-ages than the de-fault ones when you start, in-sert 
a call to [][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 in the
Underfull \hbox (badness 1231) in paragraph at lines 38703--38713
\T1/pcr/m/n/10 = character()) []\T1/ptm/m/n/10 will at-tach no ex-tra pack-ages
 on startup (only the \T1/ptm/b/n/10 base \T1/ptm/m/n/10 pack-age) (or
Underfull \hbox (badness 1112) in paragraph at lines 38703--38713
\T1/ptm/m/n/10 set []\T1/pcr/m/n/10 R_DEFAULT_PACKAGES=NULL []\T1/ptm/m/n/10 as
 an en-vi-ron-ment vari-able be-fore run-ning \T1/phv/m/n/10 R\T1/ptm/m/n/10 ).
 Us-ing
[557]
Underfull \hbox (badness 10000) in paragraph at lines 38759--38765
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/pcr/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 38759--38765
\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1496) in paragraph at lines 38759--38765
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/pcr/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be
Underfull \hbox (badness 1460) in paragraph at lines 38774--38781
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/pcr/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 38774--38781
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 38774--38781
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
[558]
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 []\T1/pcr/m/n/9 # Variable expansion in double quotes, string literals with ba
ckslashes in[] 
[559] [560] [561]
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[]\T1/ptm/m/n/10 alternative to []\T1/pcr/m/n/10 exprs []\T1/ptm/m/n/10 or []\T
1/pcr/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
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 [] \T1/pcr/m/n/10 assert <- function(exprs) eval.parent(substitute(stopifnot(e
xprs = exprs))) 
[562] [563]
Underfull \hbox (badness 1436) in paragraph at lines 39176--39180
[]\T1/ptm/m/n/10 integer de-ter-min-ing the []\T1/pcr/m/n/10 format()[]\T1/ptm/
m/n/10 ing of sec-onds when needed. Note
[564] [565] [566] [567] [568]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 39569--39569
 []\T1/pcr/m/n/9 z3 # prints without fractional seconds by default, digits.sec 
= NULL ("= 0")[] 
[569]
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 []\T1/pcr/m/n/9 format(s1 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 19
78-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 day
\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ,   len =  7), "%a")[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 39598--39598
 []\T1/pcr/m/n/9 format(s2 <- seq.Date(as.Date(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 20
00-01-01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ), by = \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 mon
th\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , len = 12), "%b")[] 
[570]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 39710--39710
 []            \T1/pcr/m/n/10 add the string to the left of the match to the ou
tput.[] 
[571] [572] [573] [574]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 39973--39973
 []        \T1/pcr/m/n/10 exdent = 0, prefix = "", simplify = TRUE, initial = p
refix)[] 
[575]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 40017--40017
 []\T1/pcr/m/n/9 x <- paste(readLines(file.path(R.home("doc"), "THANKS")), coll
apse = "\n")[] 
[576] [577] [578] [579] [580] [581]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 40464--40464
 []\T1/pcr/m/n/9 ## In fact, you can pass vectors into several arguments, and e
verything gets added.[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 40467--40467
 []\T1/pcr/m/n/9 ## If there are missing values, the sum is unknown, i.e., also
 missing, ....[] 
[582]
Underfull \hbox (badness 10000) in paragraph at lines 40518--40525
[]\T1/ptm/m/n/10 integer, used for num-ber for-mat-ting with [][][]\T1/pcr/m/n/
10 signif[][][]() []\T1/ptm/m/n/10 (for
Underfull \hbox (badness 10000) in paragraph at lines 40518--40525
[]\T1/pcr/m/n/10 summary.default[]\T1/ptm/m/n/10 ) or [][][]\T1/pcr/m/n/10 form
at[][][]() []\T1/ptm/m/n/10 (for []\T1/pcr/m/n/10 summary.data.frame[]\T1/ptm/m
/n/10 ).
[583]
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 []\T1/pcr/m/n/9 summary(attenu, digits = 4) #-> summary.data.frame(...), defau
lt precision 
[584] [585] [586] [587] [588]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 40885--40885
 []    \T1/pcr/m/n/9 cat(ch,":", switch(EXPR = ch, a =, A = 1, b = 2:3, "Otherw
ise: last"),"\n")[] 
[589] [590] [591]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 41090--41090
 []\T1/pcr/m/n/9 if(.Platform$OS.type == "unix") ## on Unix-alikes such Linux, 
macOS, FreeBSD:[] 
[592]
Underfull \hbox (badness 2293) in paragraph at lines 41120--41126
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-
Underfull \hbox (badness 1237) in paragraph at lines 41120--41126
\T1/ptm/m/n/10 tails of wild-cards ex-pan-sion, see your sys-tem's doc-u-men-ta
-tion on the []\T1/pcr/m/n/10 glob []\T1/ptm/m/n/10 sys-tem call.
Underfull \hbox (badness 4792) in paragraph at lines 41139--41144
[]\T1/ptm/m/n/10 If a file-name starts with []\T1/pcr/m/n/10 . []\T1/ptm/m/n/10
 this may need to be matched ex-plic-itly: for ex-am-ple
Underfull \hbox (badness 1107) in paragraph at lines 41139--41144
[]\T1/pcr/m/n/10 Sys.glob("*.RData") []\T1/ptm/m/n/10 may or may not match `\T1
/pcr/m/n/10 .RData\T1/ptm/m/n/10 ' but will not usu-ally match
[593] [594] [595] [596]
Underfull \hbox (badness 10000) in paragraph at lines 41427--41431
[]\T1/pcr/m/n/10 sys.status() []\T1/ptm/m/n/10 re-turns a list with com-po-nent
s []\T1/pcr/m/n/10 sys.calls[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sys.parents []\
T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 sys.call []\T1/ptm/m/n/10 re-turns a call, []\T1/pcr/m/n/10 sy
s.function []\T1/ptm/m/n/10 a func-tion def-i-ni-tion, and []\T1/pcr/m/n/10 sys
.frame []\T1/ptm/m/n/10 and
[597] [598]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 41580--41580
 []\T1/pcr/m/n/9 is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths
), keepNA=TRUE))[] 
[599]
Overfull \hbox (19.22812pt too wide) in paragraph at lines 41661--41661
 []\T1/pcr/m/n/9 print(Sys.setenv(R_TEST = "testit", "A+C" = 123))  # \TS1/cmtt
/m/n/9 `\T1/pcr/m/n/9 A+C\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 could also be used 
[600] [601] [602]
Underfull \hbox (badness 1082) in paragraph at lines 41806--41809
[]\T1/ptm/m/n/10 logical. If []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions
 keep their source in-clud-ing com-ments, see
Underfull \hbox (badness 10000) in paragraph at lines 41833--41835
[][][]\T1/pcr/m/n/10 source[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 lo
adNamespace[][][] []\T1/ptm/m/n/10 which is called from [][][]\T1/pcr/m/n/10 li
brary[][][](.) []\T1/ptm/m/n/10 and uses
[603] [604] [605]
Underfull \hbox (badness 1038) in paragraph at lines 41999--42002
[]\T1/ptm/m/n/10 a log-i-cal (not []\T1/pcr/m/n/10 NA[]\T1/ptm/m/n/10 ) in-di-c
at-ing whether mes-sages writ-ten to `\T1/pcr/m/n/10 stdout\T1/ptm/m/n/10 ' or
[606] [607] [608] [609] [610]
Underfull \hbox (badness 1442) in paragraph at lines 42364--42368
\T1/ptm/m/n/10 con-sider it to be piped or redi-rected: []\T1/pcr/m/n/10 stdout
 = TRUE []\T1/ptm/m/n/10 uses a pipe whereas []\T1/pcr/m/n/10 stdout =
[611] [612] [613] [614]
Underfull \hbox (badness 4096) in paragraph at lines 42618--42621
[]\T1/ptm/m/n/10 Use [][][]\T1/pcr/m/n/10 ftable[][][] []\T1/ptm/m/n/10 for pri
nt-ing (and more) of mul-ti-di-men-sional ta-bles. [][][]\T1/pcr/m/n/10 margin.
table[][][][]\T1/ptm/m/n/10 ,
[615]
Underfull \hbox (badness 7888) in paragraph at lines 42732--42736
[]\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/pcr/m/n/10 bin []\T1/ptm/m/n/10 can
 have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/pcr/
m/n/10 length(bin) >
[616] [617] [618]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 42894--42894
 []            \T1/pcr/m/n/9 matrix(c(1L, 2L, NA, 3L), 2, dimnames = list(c("1"
, "2"), c("A", "B")))),[] 
Overfull \hbox (30.0281pt too wide) in paragraph at lines 42896--42896
 []            \T1/pcr/m/n/9 array(list(\TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 2\TS1/cm
tt/m/n/9 ` \T1/pcr/m/n/9 = structure(c(2, 5.75, 9.5, 13.25, 17), names = nq),[]
 
Overfull \hbox (55.67578pt too wide) in paragraph at lines 42898--42898
 []                 \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 4\TS1/cmtt/m/n/9 ` \T1/pcr/m
/n/9 = NULL, \TS1/cmtt/m/n/9 `\T1/pcr/m/n/9 5\TS1/cmtt/m/n/9 ` \T1/pcr/m/n/9 = 
NULL), dim=4, dimnames=list(as.character(2:5)))))[] 
Underfull \hbox (badness 10000) in paragraph at lines 42911--42913
[]\T1/pcr/m/n/10 removeTaskCallback []\T1/ptm/m/n/10 un-registers a func-tion t
hat was reg-is-tered ear-lier via
[619]
Underfull \hbox (badness 10000) in paragraph at lines 42991--42994
[][][]\T1/pcr/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer .
[620] [621]
Underfull \hbox (badness 3872) in paragraph at lines 43109--43112
[]\T1/ptm/m/n/10 Duncan Tem-ple Lang (2001) \T1/ptm/m/it/10 Top-level Task Call
-backs in R\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / developer .
[622]
Underfull \hbox (badness 5475) in paragraph at lines 43175--43179
[][][]\T1/pcr/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 taskCallback
Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/pcr/m/n/10 https : / /
[623] [624] [625] [626] [627] [628]
Underfull \hbox (badness 1655) in paragraph at lines 43598--43605
\T1/ptm/m/n/10 may also be known as `[]\T1/pcr/m/n/10 GB[]\T1/ptm/m/n/10 ', `[]
\T1/pcr/m/n/10 GB-Eire[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Belfast[]\T1
/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 Europe/Guernsey[]\T1/ptm/m/n/10 ',
Underfull \hbox (badness 2253) in paragraph at lines 43606--43611
[]\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-turns a char-ac-ter vec-tor, se
e the ex-am-ples for typ-i-cal cases. It may
Underfull \hbox (badness 1655) in paragraph at lines 43606--43611
\T1/ptm/m/n/10 have an at-tribute []\T1/pcr/m/n/10 "Version"[]\T1/ptm/m/n/10 , 
some-thing like `[]\T1/pcr/m/n/10 "2023a"[]\T1/ptm/m/n/10 '. (It does on sys-te
ms us-ing
[629]
Underfull \hbox (badness 4467) in paragraph at lines 43656--43665
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 OlsonNames []\T1/ptm/m/n/10 re-
turns the time-zone names known to the cur-rently se-
Underfull \hbox (badness 3954) in paragraph at lines 43656--43665
\T1/ptm/m/n/10 lected Ol-son/IANA database. The system-specific lo-ca-tion in t
he file sys-tem varies,
[630]
Underfull \hbox (badness 1337) in paragraph at lines 43759--43767
\T1/ptm/m/n/10 a file `\T1/pcr/m/n/10 localtime\T1/ptm/m/n/10 ', usu-ally un-de
r `\T1/pcr/m/n/10 /etc\T1/ptm/m/n/10 ' (but pos-si-bly un-der `\T1/pcr/m/n/10 /
usr/local/etc\T1/ptm/m/n/10 ' or
Underfull \hbox (badness 10000) in paragraph at lines 43768--43771
[]\T1/ptm/m/n/10 `Because the time zone iden-ti-fier is ex-tracted from the sym
-link tar-get name of
[631]
Underfull \hbox (badness 3460) in paragraph at lines 43824--43827
[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/pcr/m/n/10 https : / / data . iana . org /
Underfull \hbox (badness 4429) in paragraph at lines 43828--43830
[][][]$\T1/pcr/m/n/10 https : / / data . iana . org / time-[]zones / theory . h
tml$[][] \T1/ptm/m/n/10 for the `rules' of the Ol-
Overfull \hbox (31.3804pt too wide) in paragraph at lines 43837--43837
 []\T1/pcr/m/n/9 ## typically some acronyms/aliases such as "UTC", "NZ", "MET",
 "Eire", ..., but[] 
[632] [633] [634] [635] [636]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 44180--44180
 []\T1/pcr/m/n/9 trace(pt, tracer = quote(cat(sprintf("tracing pt(*, ncp = %.15
g)\n", ncp))),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 44182--44182
 []\T1/pcr/m/n/9 power.t.test(20, 1, power=0.8, sd=NULL)  ##--> showing the ncp
 root finding:[] 
[637] [638]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44282--44282
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
Overfull \hbox (84.78088pt too wide) in paragraph at lines 44284--44284
 []                                           \T1/pcr/m/n/10 getOption("deparse
.max.lines", -1L)))[] 
[639] [640] [641]
Underfull \hbox (badness 6542) in paragraph at lines 44558--44560
[]\T1/pcr/m/n/10 cospi(x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sinpi(x)[]\T1/ptm/
m/n/10 , and []\T1/pcr/m/n/10 tanpi(x)[]\T1/ptm/m/n/10 , com-pute []\T1/pcr/m/n
/10 cos(pi*x)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 sin(pi*x)[]\T1/ptm/m/n/10 , an
d
[642] [643]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 44677--44677
 []\T1/pcr/m/n/10 trimws(x, which = c("both", "left", "right"), whitespace = "[
 \t\r\n]") 
[644]
Underfull \hbox (badness 1708) in paragraph at lines 44745--44753
[]\T1/pcr/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any
 er-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 3713) in paragraph at lines 44745--44753
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
][]\T1/pcr/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less
[645]
Underfull \hbox (badness 4859) in paragraph at lines 44785--44790
[][][]\T1/pcr/m/n/10 options[][][] []\T1/ptm/m/n/10 for set-ting er-ror han-dle
rs and sup-press-ing the print-ing of er-ror mes-sages;
[646]
Underfull \hbox (badness 3895) in paragraph at lines 44847--44859
[]\T1/ptm/m/n/10 A char-ac-ter string. The pos-si-ble val-ues are listed in the
 struc-ture []\T1/pcr/m/n/10 TypeTable []\T1/ptm/m/n/10 in
Underfull \hbox (badness 1303) in paragraph at lines 44847--44859
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/main/util.c\T1/ptm/m/n/10 '. Cur-rent val-ue
s are the vec-tor types []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "integer"[]\T1/ptm/m/n/10 ,
[647] [648] [649] [650] [651]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 45195--45195
 []\T1/pcr/m/n/9 ll <- list(as.name("sinc"), quote( a + b ), 1:10, letters, exp
ression(1+x))[] 
[652] [653]
Underfull \hbox (badness 1137) in paragraph at lines 45289--45296
[]\T1/ptm/m/n/10 When a func-tion call-ing []\T1/pcr/m/n/10 UseMethod("fun") []
\T1/ptm/m/n/10 is ap-plied to an ob-ject with class vec-tor
[654] [655] [656] [657] [658]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 45667--45667
 []\T1/pcr/m/n/9 (xx <- intToUtf8(x, , TRUE)) # will only display in some local
es and fonts[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 45676--45676
 []\T1/pcr/m/n/9 system(paste("od -x", foo)) # 2-byte units, correct on little-
endian platforms[] 
[659]
Underfull \hbox (badness 2057) in paragraph at lines 45742--45748
[][][]\T1/pcr/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.acc
ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.append[][][][]\T1/ptm/m/n
/10 , [][][]\T1/pcr/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 file.exists[][][][]
\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3861) in paragraph at lines 45751--45756
[][][]\T1/pcr/m/n/10 dir.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 di
r.exists[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 normalizePath[][][][]\T1/
ptm/m/n/10 , [][][]\T1/pcr/m/n/10 path.expand[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 pipe[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Sys.glob[][][][]\
T1/ptm/m/n/10 ,
[660]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 45844--45844
 []\T1/pcr/m/n/9 try( substr(x, 1,1) ) # gives \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 in
valid multibyte string\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 error in a UTF-8 locale[] 
[661]
Underfull \hbox (badness 1803) in paragraph at lines 45907--45910
[]\T1/ptm/m/n/10 The atomic modes are []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "integer"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "numeric" []\
T1/ptm/m/n/10 (syn-onym []\T1/pcr/m/n/10 "double"[]\T1/ptm/m/n/10 ),
Underfull \hbox (badness 3471) in paragraph at lines 45911--45917
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 mode = "any"[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 is.vector []\T1/ptm/m/n/10 may re-turn []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/
n/10 for the atomic modes, [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 and
[662] [663] [664] [665]
Underfull \hbox (badness 3668) in paragraph at lines 46140--46142
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[666]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 46246--46246
 []      \T1/pcr/m/n/10 header = ngettext(n, "Warning message:\n", "Warning mes
sages:\n"),[] 
[667]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 46321--46321
 []\T1/pcr/m/n/9 ## at the end prints all three warnings, from the \TS1/pcr/m/n
/9 '\T1/pcr/m/n/9 option(warn = 0)\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 above[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 46329--46329
 []\T1/pcr/m/n/9 x <- 1:36; for(n in 1:13) for(m in 1:12) A <- matrix(x, n,m) #
 There were 105 warnings ...[] 
[668]
Underfull \hbox (badness 1783) in paragraph at lines 46394--46396
[]\T1/pcr/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 months []\T1/pt
m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e.,
[669]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 46424--46424
 []\T1/pcr/m/n/9 ## Show how easily you get month, day, year, day (of {month, w
eek, yr}), ... :[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 46436--46436
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Even simpler:  Date -> Matrix
 - dropping time info {sec,min,hour, isdst}[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 46439--46439
 []\T1/pcr/m/n/9 d2mat(seq(as.Date("2000-02-02"), by=1, length.out=30)) # has R
 1.0.0\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s release date[] 
[670]
Underfull \hbox (badness 10000) in paragraph at lines 46501--46506
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 arr.ind == TRUE []\T1/ptm/m/n/10 and []\T1
/pcr/m/n/10 x []\T1/ptm/m/n/10 is an [][][]\T1/pcr/m/n/10 array[][][] []\T1/ptm
/m/n/10 (has a [][][]\T1/pcr/m/n/10 dim[][][] []\T1/ptm/m/n/10 at-tribute), the
 re-sult is
Underfull \hbox (badness 2564) in paragraph at lines 46501--46506
[]\T1/pcr/m/n/10 arrayInd(which(x), dim(x), dimnames(x))[]\T1/ptm/m/n/10 , name
ly a ma-trix whose rows each
[671]
Underfull \hbox (badness 2818) in paragraph at lines 46597--46603
[]\T1/ptm/m/n/10 For a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 vec-
tor []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with both []\T1/pcr/m/n/10 FALSE []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 val-ues, []\T1/pcr/m/n/10
 which.min(x) []\T1/ptm/m/n/10 and
[672]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 46632--46632
 []\T1/pcr/m/n/9 ## Find the first occurrence, i.e. the first TRUE, if there is
 at least one:[] 
[673] [674] [675] [676] [677] [678]
Underfull \hbox (badness 2846) in paragraph at lines 47091--47095
[]\T1/pcr/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren
tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[679]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 47131--47131
 []\T1/pcr/m/n/9 .packages(all.available = TRUE) # return all available as char
acter vector[] 
Underfull \hbox (badness 3209) in paragraph at lines 47152--47156
[]\T1/pcr/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da
rd' reg-exps, in-clud-ing el-e-ments named
[680]) (./compiler-pkg.tex
Chapter 2.
[681]
Underfull \hbox (badness 2884) in paragraph at lines 106--120
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 options []\T1/ptm/m/n/10 ar-gu-ment can b
e used to con-trol com-piler op-er-a-tion. There are cur-
Underfull \hbox (badness 10000) in paragraph at lines 106--120
\T1/ptm/m/n/10 rently four op-tions: []\T1/pcr/m/n/10 optimize[]\T1/ptm/m/n/10 
, []\T1/pcr/m/n/10 suppressAll[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 suppressUndef
ined[]\T1/ptm/m/n/10 , and
[682] [683] [684]) (./datasets-pkg.tex
Chapter 3.
[685] [686] [687] [688] [689]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 301--301
 []  \T1/pcr/m/n/9 plot(ff, data = anscombe, col = "red", pch = 21, bg = "orang
e", cex = 1.2,[] 
[690]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 379--379
 []\T1/pcr/m/n/9 coplot(accel ~ dist | as.factor(event), data = attenu, show.gi
ven = FALSE)[] 
Underfull \vbox (badness 1472) has occurred while \output is active [691]
[692] [693] [694]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 617--617
 []           \T1/pcr/m/n/9 start = c(lrc = log(.35)), algorithm = "plinear", t
race = TRUE)[] 
[695]
Underfull \hbox (badness 4779) in paragraph at lines 704--707
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[696] [697]
Underfull \hbox (badness 4779) in paragraph at lines 837--840
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[698] [699] [700]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[701]
Underfull \hbox (badness 4779) in paragraph at lines 1152--1155
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[702] [703] [704] [705] [706]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1464--1464
 []\T1/pcr/m/n/9 plot(names(te), te, type = "h", main = f.tit, xlab = "Eruption
 time (sec)")[] 
[707] [708]
Underfull \hbox (badness 10000) in paragraph at lines 1549--1552
[]\T1/ptm/m/n/10 Finally, []\T1/pcr/m/n/10 freeny []\T1/ptm/m/n/10 is a data fr
ame with vari-ables []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lag.q
uarterly.revenue[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2903) in paragraph at lines 1549--1552
[]\T1/pcr/m/n/10 price.index[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 income.level[]\
T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 market.potential []\T1/ptm/m/n/10 ob-taine
d from the above
[709] [710] [711]
Underfull \hbox (badness 4779) in paragraph at lines 1738--1741
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[712]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1832--1832
 []\T1/pcr/m/n/9 model1 <- glm(case ~ spontaneous+induced, data = infert, famil
y = binomial())[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1840--1840
 []  \T1/pcr/m/n/9 model3 <- clogit(case ~ spontaneous+induced+strata(stratum),
 data = infert)[] 
[713] [714]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1956--1956
 []                                        \T1/pcr/m/n/9 sub(" W.",".Width", dn
i3[[2]])))),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1957--1957
 []    \T1/pcr/m/n/9 Species = gl(3, 50, labels = sub("S", "s", sub("V", "v", d
ni3[[3]]))))[] 
[715] [716] [717] [718]
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[719] [720] [721]
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[722] [723] [724] [725] [726]
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[727]
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 []\T1/pcr/m/n/9 pairs(quakes, main = "Fiji Earthquakes, N = 1000", cex.main = 
1.2, pch = ".")[] 
[734] [735] [736] [737] [738] [739]
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 []\T1/pcr/m/n/9 ## Alaska and Hawaii are placed just off the West Coast (for c
ompact map drawing):[] 
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 []\T1/pcr/m/n/9 ## state.center2 := version of state.center with "correct" coo
rdinates for AK & HI:[] 
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 []\T1/pcr/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis
t.html#Geographic%20Centers[] 
[740] [741]
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 []          \T1/pcr/m/n/9 ## The yearly series *is* close to the averages of t
he monthly one:[] 
[742] [743] [744]
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[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[745] [746] [747]
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 supplement")[] 
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[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/pcr/m/n/10 h
ttps : / / web . archive . org / web /
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\T1/pcr/m/n/10 20110523225828 / http : / / www . ltrr . arizona . edu / ~hallma
n / sitephotos /
[748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759]
[760] [761]) (./grDevices-pkg.tex [762]
Chapter 4.
[763] [764] [765] [766]
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[]\T1/ptm/m/n/10 Apart from that, [][][]\T1/pcr/m/n/10 axisTicks[][][]() []\T1/
ptm/m/n/10 just calls the C func-tion []\T1/pcr/m/n/10 CreateAtVector() []\T1/p
tm/m/n/10 in
[767] [768] [769] [770]
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 []\T1/pcr/m/n/10 cairo_pdf(filename = if(onefile) "Rplots.pdf" else "Rplot%03d
.pdf",[] 
[771] [772] [773] [774] [775] [776] [777] [778] [779] [780]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[781] [782] [783]
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 []\T1/pcr/m/n/9 zapsmall(lab <- convertColor(cols, from = "sRGB", to = "Lab", 
scale.in = 255))[] 
[784] [785] [786]
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[]\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo
re of
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[]\T1/pcr/m/n/10 c("LinearGradient", "RadialGradient", "TilingPattern")
[787] [788] [789] [790] [791]
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[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 dev.print []\T1/ptm/m/n/10 i
s to pro-duce and print a postscript copy. This will not
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\T1/ptm/m/n/10 sys-tem: see [][][]\T1/pcr/m/n/10 postscript[][][] []\T1/ptm/m/n
/10 for how to set this up. Win-dows users may pre-fer to use
[792]
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 []\T1/pcr/m/n/10 dev2bitmap(file, type = "png16m", height = 7, width = 7, res 
= 72,[] 
[793]
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[]\T1/ptm/m/n/10 The types avail-able will de-pend on the ver-sion of []\T1/pcr
/m/n/10 ghostscript[]\T1/ptm/m/n/10 , but are likely to in-
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[]\T1/pcr/m/n/10 "tiffg4"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffgray"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "tifflzw"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiffp
ack"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tiff12nc"[]\T1/ptm/m/n/10 , []\T1/pcr/
m/n/10 "tiff24nc"[]\T1/ptm/m/n/10 ,
[794]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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ter())[] 
[797]
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[798] [799]
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[]\T1/ptm/m/n/10 are given, then it uses those in a call to []\T1/pcr/m/n/10 se
tGraphicsEventHandlers []\T1/ptm/m/n/10 to re-place
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\T1/ptm/m/n/10 any ex-ist-ing han-dlers in the cur-rent de-vice. This is for co
m-pat-i-bil-ity with pre-2.12.0
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\T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions. The cur-rent nor-mal way to set up e
vent han-dlers is to set them us-ing
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[]\T1/pcr/m/n/10 setGraphicsEventHandlers []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 
setGraphicsEventEnv []\T1/ptm/m/n/10 on one or more graph-ics
[800] [801]
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 []\T1/pcr/m/n/9 dragplot <- function(..., xlim = NULL, ylim = NULL, xaxs = "r"
, yaxs = "r") {[] 
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[803] [804]
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v = FALSE) 
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 []\T1/pcr/m/n/10 grey.colors(n, start = 0.3, end = 0.9, gamma = 2.2, alpha, re
v = FALSE)[] 
[805] [806] [807] [808] [809]
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[811] [812] [813] [814]
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 = FALSE)[] 
[815]
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 []\T1/pcr/m/n/9 zapsmall(luv <- convertColor(cols, from = "sRGB", to = "Luv", 
scale.in = 255))[] 
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 []\T1/pcr/m/n/9 (hex <- convertColor(luv, from = "Luv",  to = hexcolor, scale.
out = NULL))[] 
[816] [817] [818]
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[]\T1/pcr/m/n/10 nclass.FD []\T1/ptm/m/n/10 uses the Freedman-Diaconis choice b
ased on the inter-quartile range
[819]
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 []\T1/pcr/m/n/10 palette.colors(n = NULL, palette = "Okabe-Ito", alpha, recycl
e = FALSE)[] 
[820]
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 []\T1/pcr/m/n/9 (palette(gray(seq(0,.9,length.out = 25)))) # gray scales; prin
t old palette[] 
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 []\T1/pcr/m/n/9 ## Demonstrate the colors 1:8 in different palettes using a cu
stom matplot()[] 
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 []    \T1/pcr/m/n/9 matplot(x, type = "l", lwd = 4, lty = 1, col = 1:8, ylab =
 "", main=main)[] 
[821]
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 []\T1/pcr/m/n/10 hcl.colors(n, palette = "viridis", alpha = NULL, rev = FALSE,
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[822]
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[]\T1/ptm/m/n/10 the type of palettes to list: []\T1/pcr/m/n/10 "qualitative"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sequential"[]\T1/ptm/m/n/10 ,
[823]
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[]\T1/ptm/m/n/10 For ex-am-ple, []\T1/pcr/m/n/10 "Dark 3" []\T1/ptm/m/n/10 work
s well for shad-ing points or lines in up to five groups,
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\T1/pcr/m/n/10 wikipedia . org / w / index . php ? title = HCL _ color _ space 
& oldid = 883465135$[][]\T1/ptm/m/n/10 .
[824]
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[]\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
 give a C in-te-ger for-mat such as
[826] [827] [828] [829] [830]
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 family[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 fonts[]\T1/ptm/m/n/10 ,
[831] [832]pdfTeX warning (ext4): destination with the same identifier (name{Rf
n.symbol}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.4681 \aliasA{symbol}{plotmath}{symbol}
                                         [833] [834] [835] [836] [837] [838]
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 []     \T1/pcr/m/n/10 compression = c("none", "rle", "lzw", "jpeg", "zip", "lz
w+p", "zip+p"),[] 
[839] [840]
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, [][]$\T1/pcr/m/n/10 https : / / ww
w . iso . org / standard / 34342 . html$[][]\T1/ptm/m/n/10 . See also
[841]
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 []\T1/pcr/m/n/9 ## Not run: dev.print(png, file = "myplot.png", width = 1024, 
height = 768)[] 
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[]\T1/ptm/m/n/10 For use with []\T1/pcr/m/n/10 onefile = FALSE []\T1/ptm/m/n/10
 give a []\T1/pcr/m/n/10 printf []\T1/ptm/m/n/10 for-mat such as
[842]
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[]\T1/ptm/m/n/10 as `\T1/pcr/m/n/10 "CP1250.enc"\T1/ptm/m/n/10 ' (Cen-tral Eu-r
o-pean), []\T1/pcr/m/n/10 "CP1251.enc"
[843] [844]
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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[845] [846]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[][][]\T1/pcr/m/n/10 postscriptFonts[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 Devices[][][][]\T1/ptm/m/n/10 , and [][][]\T1/pcr/m/n/10 check.options[][][]
 []\T1/ptm/m/n/10 which is called from both
[847] [848]
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[]\T1/pcr/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Bookman"[]\T1
/ptm/m/n/10 , []\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "He
lvetica"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10 
,
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[]\T1/pcr/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Pal
atino" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/pc
r/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "URWBookman"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusMon"[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "NimbusSan" []\T1/ptm/m/n/10 (syn-onym []\T1/p
cr/m/n/10 "URWHelvetica"[]\T1/ptm/m/n/10 ),
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[]\T1/ptm/m/n/10 There are also map-pings for []\T1/pcr/m/n/10 "ComputerModern"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ComputerModernItalic" []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 "Japan1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1HeiMin"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Japan1GothicBBB"[]\T1/ptm/m/n/10 , and []\T1/p
cr/m/n/10 "Japan1Ryumin" []\T1/ptm/m/n/10 for
[849]
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[]\T1/pcr/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/p
cr/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[850] [851]
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 []\T1/pcr/m/n/9 ## time ranges in diverse scales:% also in ../../../../tests/r
eg-tests-1c.R[] 
[852]
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[853] [854]
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[]\T1/ptm/m/n/10 Calling []\T1/pcr/m/n/10 quartz() []\T1/ptm/m/n/10 sets [][][]
\T1/pcr/m/n/10 .Device[][][] []\T1/ptm/m/n/10 to []\T1/pcr/m/n/10 "quartz" []\T
1/ptm/m/n/10 for on-screen de-vices and to
[855] [856] [857] [858] [859]
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 []\T1/pcr/m/n/9 rgb((0:15)/15, green = 0, blue = 0, names = paste("red", 0:15,
 sep = "."))[] 
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[]\T1/pcr/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r
ed/green/blue) into HSV space
[860] [861] [862] [863] [864] [865]
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 []\T1/pcr/m/n/10 windows(width, height, pointsize, record, rescale, xpinch, yp
inch, 
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 []\T1/pcr/m/n/10 win.metafile(filename = "", width = 7, height = 7, pointsize 
= 12,[] 
[866] [867] [868] [869]
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[]\T1/ptm/m/n/10 arguments []\T1/pcr/m/n/10 width[]\T1/ptm/m/n/10 , []\T1/pcr/m
/n/10 height[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pointsize[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 record[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 rescale[]\T1/ptm/m/n/10
 ,
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[]\T1/pcr/m/n/10 xpinch[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 ypinch[]\T1/ptm/m/n/
10 , []\T1/pcr/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 canvas[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 gamma[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 xpos[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 ypos[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 buffered[]\T1/
ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 restoreConsole[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 clickToConfi
rm[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 title[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 
fillOddEven []\T1/ptm/m/n/10 and
[870]
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e on Windows only)[] 
[871]
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[]\T1/ptm/m/n/10 The \T1/phv/m/n/10 R \T1/ptm/m/n/10 func-tion is a wrap-per fo
r two de-vices, one based on Xlib ([][]$\T1/pcr/m/n/10 https : / /
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\T1/pcr/m/n/10 en . wikipedia . org / wiki / Xlib$[][]\T1/ptm/m/n/10 ) and one 
us-ing cairo-graph-ics ([][]$\T1/pcr/m/n/10 https : / / www .
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 []    \T1/pcr/m/n/10 fonts, family, xpos, ypos, title, type, antialias, symbol
family)[] 
[872]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[873]
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[]\T1/pcr/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ
K lan-guages and
[874]
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[]\T1/ptm/m/n/10 Problems with in-cor-rect ren-der-ing of sym-bols (e.g., of []
\T1/pcr/m/n/10 quote(pi) []\T1/ptm/m/n/10 and
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[]\T1/pcr/m/n/10 expression(10^degree)[]\T1/ptm/m/n/10 ) have been seen on Linu
x sys-tems which have the Wine
[875]
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[]\T1/pcr/m/n/10 type = "Xlib" []\T1/ptm/m/n/10 sup-ports `True-Color', `Pseu-d
o-Color', `GrayScale', []\T1/pcr/m/n/10 StaticGray []\T1/ptm/m/n/10 and
[876]
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 = 6, xpos = 0,[] 
[877] [878]
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[]\T1/pcr/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Helvetica" []\T1
/ptm/m/n/10 (the de-fault), []\T1/pcr/m/n/10 "Helvetica-Narrow"[]\T1/ptm/m/n/10
 ,
Underfull \hbox (badness 1721) in paragraph at lines 7824--7827
[]\T1/ptm/m/n/10 Windows users can make use of Win-FIG ([][]$\T1/pcr/m/n/10 htt
p : / / www . schmidt-[]web-[]berlin . de /
[879] [880]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 7959--7959
 []\T1/pcr/m/n/9 op <- options(warn = 2)# ==> warnings would be errors, we supp
ress the one "we know":[] 
[881]
Underfull \hbox (badness 1231) in paragraph at lines 7998--8000
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., []\T1/pcr/m/n/10
 number[i] []\T1/ptm/m/n/10 is the mul-ti-plic-ity of
[882] [883]) (./graphics-pkg.tex [884]
Chapter 5.
Underfull \hbox (badness 4647) in paragraph at lines 16--18
[]\T1/ptm/m/n/10 For a com-plete list of func-tions with in-di-vid-ual help pag
es, use []\T1/pcr/m/n/10 library(help =
[885] [886] [887] [888] [889] [890] [891]
Overfull \hbox (6.05087pt too wide) in paragraph at lines 450--450
 []  \T1/pcr/m/n/10 gap.axis <- if(perpendicular(side, las)) 0.25 else 1[] 
Underfull \hbox (badness 4048) in paragraph at lines 482--488
[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 at = NULL[]\T1/ptm/m/n/10 , pretty tick 
mark lo-ca-tions are com-puted in-ter-nally (the same way
[892] [893]
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 []\T1/pcr/m/n/9 ## now shrink the window (in x- and y-direction) and observe t
he axis labels drawn[] 
[894]
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 []\T1/pcr/m/n/9 axis.Date(3, at = as.integer(as.Date("2023-04-01")), col.axis 
= "darkgreen")[] 
[895]
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 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.POSIXct("2022-10-01 00:01:30"), col.ax
is = "orange")[] 
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 []\T1/pcr/m/n/9 axis.POSIXct(3, at = as.numeric(as.POSIXct("2022-10-01 00:00:3
0")) + 0.25,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 713--713
 []                \T1/pcr/m/n/9 col.axis = "forestgreen", col = "darkgreen", m
gp = c(3,2,0))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 719--719
 []\T1/pcr/m/n/9 plot(data.frame(HST, y = 1), xaxt = "n", xlab = "Hawaii Standa
rd Time (HST)")[] 
Underfull \hbox (badness 10000) in paragraph at lines 746--750
[]\T1/ptm/m/n/10 numeric vec-tor of length three, de-fault-ing to [][][]\T1/pcr
/m/n/10 par[][][]("xaxp") []\T1/ptm/m/n/10 or
Underfull \hbox (badness 3250) in paragraph at lines 746--750
[][][]\T1/pcr/m/n/10 par[][][]("yaxp") []\T1/ptm/m/n/10 de-pend-ing on the []\T
1/pcr/m/n/10 side []\T1/ptm/m/n/10 ar-gu-ment ([]\T1/pcr/m/n/10 par("xaxp") []\
T1/ptm/m/n/10 if
[896] [897]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 833--833
 []                 \T1/pcr/m/n/9 axp = c(get_axp(usr.i), n = 3), log = TRUE, n
intLog = 5))[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 870--870
 []        \T1/pcr/m/n/10 add = FALSE, ann = !add && par("ann"), args.legend = 
NULL, ...)[] 
[898] [899]
Underfull \hbox (badness 10000) in paragraph at lines 1017--1021
[][][]\T1/pcr/m/n/10 plot[][][](..., type = "h")[]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 dotchart[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 hist[][][] []\T1
/ptm/m/n/10 for bars of a \T1/ptm/m/it/10 con-tin-u-ous \T1/ptm/m/n/10 vari-abl
e.
[900]
Overfull \hbox (133.98029pt too wide) in paragraph at lines 1034--1034
 []        \T1/pcr/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 1036--1036
 []\T1/pcr/m/n/9 (xt <- xtabs(Freq ~ Survived + Class + Sex, d.Titanic, subset 
= Age=="Adult"))[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 1038--1038
 []\T1/pcr/m/n/9 mosaicplot(xt[,,"Male"], main = "mosaicplot(Freq ~ Class + Sur
vived, *)", color=TRUE)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [901]
[902] [903] [904]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1322--1322
 []\T1/pcr/m/n/9 # *add* notches (somewhat funny here <--> warning "notches .. 
outside hinges"):[] 
[905] [906] [907]
Underfull \hbox (badness 2503) in paragraph at lines 1484--1493
\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 horizontal []\T1/ptm/m/n/10 is false, and 
[]\T1/pcr/m/n/10 xlim []\T1/ptm/m/n/10 hor-i-zon-tally. []\T1/pcr/m/n/10 xaxt[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 yaxt[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3375) in paragraph at lines 1519--1521
[]\T1/ptm/m/n/10 whisker line type (de-fault: []\T1/pcr/m/n/10 "dashed"[]\T1/pt
m/m/n/10 ),
[908]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1593--1593
 []\T1/pcr/m/n/9 boxplot(z,   col.axis = "skyblue3", main = "boxplot(*, col.axi
s=..,main=..)")[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1594--1594
 []\T1/pcr/m/n/9 plot(z[[1]], col.axis = "skyblue3", main =    "plot(*, col.axi
s=..,main=..)")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1600--1600
 []\T1/pcr/m/n/9 splus <- list(boxwex = 0.4, staplewex = 1, outwex = 1, boxfill
 = "grey40",[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 1601--1601
 []              \T1/pcr/m/n/9 medlwd = 3, medcol = "white", whisklty = 3, outl
ty = 1, outpch = NA)[] 
[909]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1634--1634
 []  \T1/pcr/m/n/10 yaxlabels = NULL, xlim = NULL, ylim = c(0, 1), weights = NU
LL, ...)[] 
[910] [911] [912] [913]
Underfull \hbox (badness 10000) in paragraph at lines 1907--1913
[][][]\T1/pcr/m/n/10 contourLines[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
filled.contour[][][] []\T1/ptm/m/n/10 for color-filled con-tours, [][][]\T1/pcr
/m/n/10 contourplot[][][] []\T1/ptm/m/n/10 (and
[914]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1927--1927
 []\T1/pcr/m/n/9 contour(x, x, z, ylim = c(-6, 6), nlevels = 20, lty = 2, metho
d = "simple",[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1939--1939
 []\T1/pcr/m/n/9 contour(z, levels=levs[-c(1,length(levs))], col = 1:5, lwd = 1
:3 *1.5, lty = 1:3)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1955--1955
 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1964--1964
 []\T1/pcr/m/n/9 plot(x = 0, y = 0, type = "n", xlim = rx, ylim = ry, xlab = ""
, ylab = "")[] 
[915] [916]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2049--2049
 []\T1/pcr/m/n/10 coplot(formula, data, given.values, panel = points, rows, col
umns, 
[917] [918]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 2178--2178
 []\T1/pcr/m/n/9 coplot(lat ~ long | depth, data = quakes, given.values = given
.depth, rows = 1)[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2183--2183
 []\T1/pcr/m/n/9 coplot(ll.dm, data = quakes, number = c(4, 7), show.given = c(
TRUE, FALSE))[] 
[919] [920]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2357--2357
 []\T1/pcr/m/n/10 dotchart(x, labels = NULL, groups = NULL, gdata = NULL, offse
t = 1/8, 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 2358--2358
 []         \T1/pcr/m/n/10 ann = par("ann"), xaxt = par("xaxt"), frame.plot = T
RUE, log = "",[] 
[921]
Underfull \hbox (badness 1430) in paragraph at lines 2388--2390
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/pcr/m/n/10 
"n" []\T1/ptm/m/n/10 to sup-press and see also
[922]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 2469--2469
 []               \T1/pcr/m/n/10 color.palette = function(n) hcl.colors(n, "YlO
rRd", rev = TRUE),[] 
Underfull \hbox (badness 1009) in paragraph at lines 2481--2488
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[923]
Underfull \hbox (badness 7273) in paragraph at lines 2563--2567
[][][]\T1/pcr/m/n/10 contour[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 image
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 hcl.colors[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 gray.colors[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 palette[][][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 contourplot[][][] []\T1/p
tm/m/n/10 and
[924] [925] [926] [927]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2811--2811
 []\T1/pcr/m/n/9 ## maybe change the desired number of tick marks:  par(lab = c
(mx, my, 7))[] 
[928]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2848--2848
 []     \T1/pcr/m/n/10 density = NULL, angle = 45, col = "lightgray", border = 
NULL,[] 
[929] [930]
Underfull \hbox (badness 1226) in paragraph at lines 2975--2979
\T1/pcr/m/n/10 1)[]\T1/ptm/m/n/10 , they are the rel-a-tive fre-quen-cies []\T1
/pcr/m/n/10 counts/n []\T1/ptm/m/n/10 and in gen-eral sat-isfy
[931]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3028--3028
 []\T1/pcr/m/n/9 ## Extreme outliers; the "FD" rule would take very large numbe
r of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 breaks\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3032--3032
 []\T1/pcr/m/n/9 length(hh$breaks) ## typically 1 million -- though 1e6 was "a 
suggestion only"[] 
[932]
Underfull \hbox (badness 10000) in paragraph at lines 3094--3097
[][][]\T1/ptm/m/n/10 graphical pa-ram-e-ters[][][], or ar-gu-ments to [][][]\T1
/pcr/m/n/10 hist.default[][][] []\T1/ptm/m/n/10 such as
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3145--3145
 []\T1/pcr/m/n/9 ## The default fuzz in hist.default()  "kills" this, with a "w
rong" message:[] 
[933] [934] [935]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3309--3309
 []\T1/pcr/m/n/9 identifyPch <- function(x, y = NULL, n = length(x), plot = FAL
SE, pch = 19, ...)[] 
Overfull \hbox (79.98035pt too wide) in paragraph at lines 3314--3314
 []        \T1/pcr/m/n/9 ans <- identify(x[!sel], y[!sel], labels = which(!sel)
, n = 1, plot = plot, ...)[] 
[936] [937]
Underfull \hbox (badness 10000) in paragraph at lines 3456--3461
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 useRaster []\T1/ptm/m/n/10 is not spec-i-f
ied, raster im-ages are used when the
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[][][]\T1/pcr/m/n/10 getOption[][][]("preferRaster") []\T1/ptm/m/n/10 is true, 
the grid is reg-u-lar and ei-ther
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[][][]\T1/pcr/m/n/10 dev.capabilities[][][]("rasterImage")$rasterImage []\T1/pt
m/m/n/10 is []\T1/pcr/m/n/10 "yes" []\T1/ptm/m/n/10 or it is
Overfull \hbox (31.3804pt too wide) in paragraph at lines 3491--3491
 []\T1/pcr/m/n/9 # Visualize as matrix.  Need to transpose matrix and then flip
 it horizontally:[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3493--3493
 []\T1/pcr/m/n/9 imageM <- function(m, grid = max(dim(m)) <= 25, asp = (nrow(m)
-1)/(ncol(m)-1), ...) {[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3496--3496
 []        \T1/pcr/m/n/9 axis(side, at=at, labels=as.character(j+1L), col="gray
", col.axis=1, ...)[] 
[938] [939] [940]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3653--3653
 []\T1/pcr/m/n/9 barplot(yhist$counts, axes = FALSE, xlim = c(0, top), space = 
0, horiz = TRUE)[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 3672--3672
 []       \T1/pcr/m/n/10 box.lwd = par("lwd"), box.lty = par("lty"), box.col = 
par("fg"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3676--3676
 []       \T1/pcr/m/n/10 text.font = NULL, merge = do.lines && has.pch, trace =
 FALSE,[] 
[941] [942] [943]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3861--3861
 []  \T1/pcr/m/n/9 text  (1, y.leg[i] - 0.1, paste("cex=", formatC(cexv[i])), c
ex = 0.8, adj = 0)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3862--3862
 []  \T1/pcr/m/n/9 legend(3, y.leg[i], leg.txt, pch = "sSvV", col = c(1, 3), ce
x = cexv[i])[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3866--3866
 []       \T1/pcr/m/n/9 cex = 1+(-1:2)/8, trace = TRUE)# trace: show computed l
engths & coords[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3876--3876
 []  \T1/pcr/m/n/9 title("legend(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 top\TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 , lty = c(2, -1, 1), pch = c(NA, 3, 4), merge = TRUE)",[] 
[944]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3907--3907
 []                      \T1/pcr/m/n/9 "text(c(3,3),2:3,\"c(rect(...)\")"), adj
 = c(0, 0.3))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3933--3933
 []\T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Filled\TS1/pcr/m/n/9 ' \T1/pc
r/m/n/9 boxes -- see also example(barplot) which may call legend(*, fill=)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3935--3935
 []\T1/pcr/m/n/9 legend("topright", rownames(VADeaths), fill = gray.colors(nrow
(VADeaths)))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3946--3946
 []\T1/pcr/m/n/9 legend("bottomright", paste("sin(", 1:7, "pi * x)"), col = 1:7
, lty = 1:7,[] 
Underfull \vbox (badness 10000) has occurred while \output is active [945]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3961--3961
 []\T1/pcr/m/n/9 legend(.4,1, "sin(c x)", pch = 21, pt.bg = "white", lty = 1, c
ol = "blue")[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3969--3969
 []\T1/pcr/m/n/9 legend("topleft",     "(x,y)", pch=1, title= "topleft, inset =
 .05", inset = .05)[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 3971--3971
 []\T1/pcr/m/n/9 legend("topright",    "(x,y)", pch=1, title= "topright, inset 
= .02",inset = .02)[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 3979--3979
 []   \T1/pcr/m/n/9 plot(1, type = "n", axes = FALSE, ann = FALSE); title(paste
("text.font =",i))[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3989--3989
 []\T1/pcr/m/n/9 legend("bottomleft", c("This legend", "has", "optimally sized"
, "columns."),[] 
[946]
Underfull \hbox (badness 10000) in paragraph at lines 4051--4055
[][][]\T1/pcr/m/n/10 lines.formula[][][] []\T1/ptm/m/n/10 for the for-mula meth
od; [][][]\T1/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , par-tic-u-larly for []\
T1/pcr/m/n/10 type %in%
[947] [948]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 4163--4163
 []        \T1/pcr/m/n/10 log = "", ..., add = FALSE, verbose = getOption("verb
ose"))[] 
[949] [950]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 4317--4317
 []\T1/pcr/m/n/9 nd <- length(dv <- seq(as.Date("1959-02-21"), by = "weeks", le
ngth.out = 100))[] 
[951]
Underfull \hbox (badness 3930) in paragraph at lines 4396--4398
[]\T1/ptm/m/n/10 The mag-ni-fi-ca-tion to be used for axis an-no-ta-tion, as a 
mul-ti-ple of
[952] [953] [954] [955] [956]
Underfull \hbox (badness 1286) in paragraph at lines 4707--4710
[]\T1/ptm/m/n/10 which draws the ti-tle. You may want to spec-ify []\T1/pcr/m/n
/10 oma []\T1/ptm/m/n/10 when chang-ing
Underfull \hbox (badness 3229) in paragraph at lines 4715--4720
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[957] [958]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4811--4811
 []\T1/pcr/m/n/9 pairs(USJudgeRatings, lower.panel = panel.smooth, upper.panel 
= panel.cor,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4816--4816
 []      \T1/pcr/m/n/9 main = "Lengths and Widths in [log]", line.main=1.5, oma
=c(2,2,3,2))[] 
[959]
Underfull \hbox (badness 1264) in paragraph at lines 5007--5020
\T1/ptm/m/n/10 func-tions such as [][][]\T1/pcr/m/n/10 plot.default[][][][]\T1/
ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.window[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 points[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lines[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 abline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 axis[][][][]\T1/ptm/m/n/10 ,
[960] [961] [962] [963]
Underfull \hbox (badness 10000) in paragraph at lines 5273--5276
[964 </builddir/build/BUILD/R-rc/library/graphics/help/figures//mai.pdf>]
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[965 </builddir/build/BUILD/R-rc/library/graphics/help/figures//oma.pdf>]
[966] [967]
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 []\T1/pcr/m/n/9 c(prof.pilots = 16, lawyers = 11, farmers = 10, salesmen = 9, 
physicians = 9,[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5581--5581
 []  \T1/pcr/m/n/9 mechanics = 6, policemen = 6, managers = 6, engineers = 5, t
eachers = 4,[] 
Underfull \vbox (badness 10000) has occurred while \output is active [968]
[969] [970] [971] [972] [973]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 5945--5945
 []\T1/pcr/m/n/9 pie(c(Sky = 78, "Sunny side of pyramid" = 17, "Shady side of p
yramid" = 5),[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 5946--5946
 []    \T1/pcr/m/n/9 init.angle = 315, col = c("deepskyblue", "yellow", "yellow
3"), border = FALSE)[] 
[974]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6005 \aliasA{plot}{plot.default}{plot}
                                         [975] [976] [977] [978] [979]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6337--6337
 []\T1/pcr/m/n/9 plot(weight ~ group, data = PlantGrowth)           # numeric v
ector ~ factor[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6343--6343
 []\T1/pcr/m/n/9 plot(PlantGrowth$group, axes = FALSE, main = "no axes")  # ext
remely silly[] 
[980] [981]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 6467--6467
 []               \T1/pcr/m/n/10 main = paste("Histogram of", paste(x$xname, co
llapse = "\n")),[] 
[982] [983] [984] [985]
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[]\T1/ptm/m/n/10 background (fill) color for the open plot sym-bols 21:25: see
[986] [987]
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[]\T1/ptm/m/n/10 character (or sym-bol) ex-pan-sion: a nu-mer-i-cal vec-tor. Th
is works as a mul-ti-ple of
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[][] 
[988 </builddir/build/BUILD/R-rc/library/graphics/help/figures//pch.pdf>]
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 []\T1/pcr/m/n/9 plot(x, sin(x), type = "o", pch = 21, bg = par("bg"), col = "b
lue", cex = .6,[] 
[989]
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 []    \T1/pcr/m/n/9 plot(rx, ry, type = "n", axes  =  FALSE, xlab = "", ylab =
 "", main = main)[] 
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[991]
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[]\T1/ptm/m/n/10 The code im-ple-ment-ing poly-gon shad-ing was do-nated by Kev
in Buhr
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 []  \T1/pcr/m/n/9 polygon(x, y, xpd = xpd, col = "orange", lty = 2, lwd = 2, b
order = "red")[] 
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 []\T1/pcr/m/n/9 yy <- c(c(0, cumsum(stats::rnorm(n))), rev(c(0, cumsum(stats::
rnorm(n)))))[] 
[992]
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[]\T1/ptm/m/n/10 character value spec-i-fy-ing the path fill mode: ei-ther []\T
1/pcr/m/n/10 "winding" []\T1/ptm/m/n/10 or
[993] [994] [995] [996]
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 []\T1/pcr/m/n/9 rect(100+i, 300+i, 150+i, 380+i, col = rainbow(11, start = 0.7
, end = 0.1))[] 
[997] [998] [999] [1000] [1001] [1002]
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 []\T1/pcr/m/n/9 Lab.palette <- colorRampPalette(c("blue", "orange", "red"), sp
ace = "Lab")[] 
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 []\T1/pcr/m/n/9 ## label the 20 very lowest-density points,the "outliers" (wit
h obs.number):[] 
[1003]
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 []          \T1/pcr/m/n/10 subset = NULL, weights = NULL, drop.unused.levels =
 FALSE)[] 
[1004] [1005] [1006] [1007] [1008]
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us  =  FALSE,[] 
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 []\T1/pcr/m/n/9 stars(USJudgeRatings, locations = c(0, 0), scale = FALSE, radi
us  =  FALSE,[] 
[1009]
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 []      \T1/pcr/m/n/9 draw.segments = TRUE, col.segments = 0, col.stars = 1:10
, key.loc =  0:1,[] 
[1010] [1011]
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NULL, ...) 
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[1012] [1013]
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 []\T1/pcr/m/n/10 sunflowerplot(formula, data = NULL, xlab = NULL, ylab = NULL,
 ...,[] 
[1014]
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 number[i] == 1[]\T1/ptm/m/n/10 , a (sligh
tly en-larged) usual plot-ting sym-bol ([]\T1/pcr/m/n/10 pch[]\T1/ptm/m/n/10 ) 
is drawn. For
[1015]
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 []\T1/pcr/m/n/9 sunflowerplot(iris[, 3:4], cex = .2, cex.fact = 1, size = .035
, seg.lwd = .8)[] 
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 []\T1/pcr/m/n/9 sunflowerplot(rnorm(100), rnorm(100), number = rpois(n = 100, 
lambda = 2),[] 
[1016] [1017]
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 []\T1/pcr/m/n/9 text(x, y, apply(format(round(z3, digits = 2)), 1, paste, coll
apse = ","),[] 
[1018] [1019] [1020]
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 []     \T1/pcr/m/n/9 "Le fran�ais, c\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 est fa�ile: 
R�gles, Libert�, Egalit�, Fraternit�...")[] 
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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/pcr/m
/n/10 par(c("font.sub",
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[]\T1/ptm/m/n/10 The po-si-tions of []\T1/pcr/m/n/10 xlab[]\T1/ptm/m/n/10 , []\
T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sub []\T1/ptm/m/n/10 a
re []\T1/pcr/m/n/10 line []\T1/ptm/m/n/10 (de-fault for []\T1/pcr/m/n/10 xlab [
]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 ylab []\T1/ptm/m/n/10 be-ing
[1021]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni
ts}) has been already used, duplicate ignored
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                   \relax 
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                                               [1022]
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[]\T1/ptm/m/n/10 vectors con-tain-ing the co-or-di-nates of the ver-tices of th
e poly-gon. See
[1023] [1024]
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 []\T1/pcr/m/n/9 arrows(res$x[nr-3], res$y[nr-3], res$x[nr], res$y[nr], code = 
2, length = 0.1)[] 
[1025]) (./grid-pkg.tex [1026]
Chapter 6.
[1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036]
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[]\T1/ptm/m/n/10 Modification of the view-port (should all be valid ar-gu-ments
 to the
[1037] [1038] [1039] [1040] [1041] [1042]
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it(1, "inches")))[] 
[1043] [1044] [1045]
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, height=0.5,[] 
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), name="B"),[] 
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, height=0.5,[] 
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), name="C"),[] 
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, height=0.5,[] 
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), name="D")),[] 
[1046] [1047] [1048] [1049]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a cir-cle grob (a graph-i-cal ob-ject 
de-scrib-ing a cir-cle), but only
[1050] [1051] [1052] [1053] [1054] [1055] [1056]
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 []  \T1/pcr/m/n/9 do.call("grid.curve", c(list(x1=.25, y1=.25, x2=.75, y2=.75)
, list(...)))[] 
[1057] [1058] [1059]
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 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.25, y=.75, gp=gpar(fill="bla
ck"), name="r1")[] 
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 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.5, y=.5, gp=gpar(fill="grey"
), name="r2")[] 
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 []\T1/pcr/m/n/9 grid.rect(width=.4, height=.4, x=.75, y=.25, gp=gpar(fill="whi
te"), name="r3")[] 
[1060]
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[]\T1/ptm/m/n/10 The meth-ods for grob and gTree call the generic hook func-tio
ns []\T1/pcr/m/n/10 preDrawDetails[]\T1/ptm/m/n/10 ,
[1061]
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[]\T1/ptm/m/n/10 Both func-tions call []\T1/pcr/m/n/10 editDetails []\T1/ptm/m/
n/10 to al-low a grob to per-form cus-tom ac-tions and
[1062] [1063] [1064]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a frame grob (a graph-i-cal ob-ject de
-scrib-ing a frame), but only
[1065] [1066] [1067]
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 []\T1/pcr/m/n/10 getGrob(gTree, gPath, strict = FALSE, grep = FALSE, global = 
FALSE)[] 
[1068]
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[]\T1/ptm/m/n/10 The jus-ti-fi-ca-tion of the glyphs rel-a-tive to the ([]\T1/p
cr/m/n/10 x[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) lo-ca-tion. 
Can be
[1069]
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 []\T1/pcr/m/n/10 grid.grabExpr(expr, warn = 2, wrap = wrap.grobs, wrap.grobs =
 FALSE,[] 
[1070] [1071]
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 []                          \T1/pcr/m/n/9 children=gList(grob(name="child", vp
="vp1::vp2")),[] 
[1072]
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 []           \T1/pcr/m/n/10 default.units = "npc", gp=gpar(col = "grey"), vp =
 NULL)[] 
[1073] [1074]
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[]\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix;
 see
[1075]
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[]\T1/ptm/m/n/10 Another pos-si-ble use of []\T1/pcr/m/n/10 grid.group() []\T1/
ptm/m/n/10 is to spec-ify both []\T1/pcr/m/n/10 src []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 dst []\T1/ptm/m/n/10 and com-bine
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[]\T1/ptm/m/n/10 is only drawn where it is NOT over-lapped by []\T1/pcr/m/n/10 
src[]\T1/ptm/m/n/10 . The fol-low-ing (ex-tended) Porter-
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[]\T1/pcr/m/n/10 "multiply"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "screen"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "overlay"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "darke
n"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lighten"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "color.dodge"[]\T1/ptm/m/n/10 ,
[1076]
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 []  \T1/pcr/m/n/9 mask <- as.mask(rectGrob(gp=gpar(col=NA, fill="grey50")), ty
pe="luminance")[] 
[1077]
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 []  \T1/pcr/m/n/9 pushViewport(viewport(layout=grid.layout(1, 1, widths=unit(1
, "inches"),[] 
[1078] [1079] [1080] [1081] [1082]
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 []                                       \T1/pcr/m/n/9 children=vpList(viewpor
t(name="vp2"))))[] 
[1083] [1084]
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 []\T1/pcr/m/n/9 pushViewport(viewport(x=0, y=0, width=0.25, height=0.25, just=
c("left", "bottom")))[] 
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[]\T1/ptm/m/n/10 There are two hooks called []\T1/pcr/m/n/10 "before.grid.newpa
ge" []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 "grid.newpage" []\T1/ptm/m/n/10 (see
[1085] [1086]
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 []          \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border =
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 []          \T1/pcr/m/n/10 force.width = FALSE, force.height = FALSE, border =
 NULL,[] 
[1087] [1088] [1089]
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 []                \T1/pcr/m/n/9 "Nested rectangles, outer clockwise, inner ant
i-clockwise")[] 
[1090]
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 []                \T1/pcr/m/n/9 "Overlapping rectangles, one clockwise, other 
anti-clockwise")[] 
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 []\T1/pcr/m/n/9 # Not specifying pathId will treat all points as part of the s
ame path, thus[] 
[1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101]
[1102]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1103] [1104] [1105] [1106]
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 []                            \T1/pcr/m/n/9 width=unit(1, "inches"), height=un
it(1, "inches")))[] 
[1107] [1108]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1109]
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 []\T1/pcr/m/n/9 grid.text(quote(frac(e^{-x^2/2}, sqrt(2*pi))), x=x, y=y, rot=s
tats::runif(20, -45,45),[] 
[1110] [1111] [1112] [1113] [1114] [1115]
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 gridCoords []\T1/ptm/m/n/10 a nu-meric ve
c-tor. For []\T1/pcr/m/n/10 gridGrobCoords []\T1/ptm/m/n/10 a list
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\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 "GridCoords" []\T1/ptm/m/n/10 ob-jects. For 
[]\T1/pcr/m/n/10 gridGTreeCoords []\T1/ptm/m/n/10 a list of ei-ther
[1116]
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[]\T1/ptm/m/n/10 Either a []\T1/pcr/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob
-ject (a list of lists with com-po-nents []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 y[]\T1/ptm/m/n/10 ) or a
[1117] [1118] [1119]
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 grid.legend()[]\T1/ptm/m/n/10 : all the a
r-gu-ments above are passed to
[1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130]
[1131] [1132] [1133] [1134] [1135] [1136]
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 []\T1/pcr/m/n/9 unitType(min(unit(1, "in"), unit(1, "npc") + unit(1, "mm")), r
ecurse=TRUE)[] 
[1137] [1138]
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 []\T1/pcr/m/n/10 viewportTransform(group, shear=groupShear(), flip=groupFlip()
, device=TRUE) 
[1139]
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[]\T1/ptm/m/n/10 This func-tion can be used to gen-er-ate a view-port path for 
use in []\T1/pcr/m/n/10 downViewport []\T1/ptm/m/n/10 or
[1140]
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[][][]\T1/pcr/m/n/10 viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 push
Viewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 popViewport[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 seekViewport[][][][]\T1/ptm/m/n/10 ,
[1141] [1142] [1143]
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[1145] [1146]
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 []\T1/pcr/m/n/9 invisible(lapply(trace, function(t) grid.lines(t$x, t$y, gp=gp
ar(col="red"))))[] 
[1147]) (./methods-pkg.tex [1148]
Chapter 7.
[1149] [1150]
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[]\T1/ptm/m/n/10 func-tion. See that doc-u-men-ta-tion also for de-tails of how
 co-erce meth-ods work. Use
[1151] [1152] [1153]
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[][][]\T1/pcr/m/n/10 GroupGenericFunctions[][][] []\T1/ptm/m/n/10 for other in-
for-ma-tion about group generic func-tions; [][]Meth-
[1154] [1155]
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 []\T1/pcr/m/n/9 ## vector.  The next method will always be the default, usuall
y a primitive.[] 
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 []\T1/pcr/m/n/9 ## For arithmetic and one rnum with anything, callNextMethod w
ith no arguments[] 
[1156]
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 []\T1/pcr/m/n/9 ## Simple examples to illustrate callNextMethod with and witho
ut arguments[] 
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 []\T1/pcr/m/n/9 ## call f() with 2 arguments: callNextMethod passes both to th
e default method[] 
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 []\T1/pcr/m/n/9 ## call f() with 1 argument:  the default "B0" is not passed b
y callNextMethod[] 
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 []\T1/pcr/m/n/9 ## uses the class of the *argument* to consistently select the
 "B0" method[] 
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 []\T1/pcr/m/n/9 ## Although the argument here is numeric, it\TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 s still the "B0" method that\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s called[
] 
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[1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169]
[1170] [1171] [1172]
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 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i), sum(1:10, 1+1i))) # the "N
umber" method[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1796--1796
 []\T1/pcr/m/n/9 stopifnot(identical(cc(1:10, 1+1i, TRUE), c(1:10, 1+1i, TRUE))
) # the default[] 
[1173] [1174]
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to []\T1/pcr/m/n/10 insertSource []\T1/ptm/m/n/
10 can be an ob-ject of class
[1175] [1176] [1177]
Underfull \hbox (badness 1478) in paragraph at lines 2213--2218
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use []\T1/pcr/m/n/10 where =
[1178] [1179]
Underfull \hbox (badness 10000) in paragraph at lines 2327--2331
[]\T1/ptm/m/n/10 To see the ac-tual ta-ble (an [][][]\T1/pcr/m/n/10 environment
[][][][]\T1/ptm/m/n/10 ) used for meth-ods dis-patch, call
[1180] [1181] [1182]
Underfull \hbox (badness 3792) in paragraph at lines 2573--2576
[]\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/pcr/m/n/10 setGeneric[][][] []\
T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c
re-ate ob-jects of class
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[]\T1/ptm/m/n/10 Object of class []\T1/pcr/m/n/10 "optionalMethod" []\T1/ptm/m/
n/10 (a union of classes []\T1/pcr/m/n/10 "function" []\T1/ptm/m/n/10 and
[1183]
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 []\T1/pcr/m/n/10 removeMethods(f, where = topenv(parent.frame()), all = missin
g(where))[] 
[1184] [1185] [1186]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2879--2879
 []\T1/pcr/m/n/9 ## get the function "myFun" -- throw an error if 0 or > 1 vers
ions visible:[] 
[1187] [1188] [1189] [1190] [1191] [1192] [1193]
Underfull \hbox (badness 10000) in paragraph at lines 3402--3407
[]\T1/ptm/m/n/10 Function []\T1/pcr/m/n/10 implicitGeneric() []\T1/ptm/m/n/10 r
e-turns the im-plicit generic ver-sion,
Underfull \hbox (badness 6268) in paragraph at lines 3402--3407
[]\T1/pcr/m/n/10 setGenericImplicit() []\T1/ptm/m/n/10 turns a generic im-plici
t, []\T1/pcr/m/n/10 prohibitGeneric() []\T1/ptm/m/n/10 pre-vents
[1194] [1195]
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[]\T1/ptm/m/n/10 For a class (or class def-i-ni-tion, see [][][]\T1/pcr/m/n/10 
getClass[][][] []\T1/ptm/m/n/10 and the de-scrip-tion of class
[1196]
Overfull \hbox (14.78088pt too wide) in paragraph at lines 3641--3650
[]
[1197] [1198]
Underfull \hbox (badness 10000) in paragraph at lines 3761--3762
[] \T1/pcr/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit
ude =
Underfull \hbox (badness 10000) in paragraph at lines 3808--3809
[]\T1/pcr/m/n/10 setMethod("plot", c("Pos", "missing"), function(x, y, ...) {
[1199]
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[]\T1/pcr/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character")
,
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[]\T1/ptm/m/n/10 A call to [][][]\T1/pcr/m/n/10 selectSuperClasses[][][](cl) []
\T1/ptm/m/n/10 re-turns a list of su-per-classes, sim-i-larly to
[1200] [1201] [1202] [1203] [1204] [1205]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 4312--4312
 []\T1/pcr/m/n/10 makeClassRepresentation(name, slots=list(), superClasses=char
acter(), 
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 []                        \T1/pcr/m/n/10 prototype=NULL, package, validity, ac
cess,[] 
[1206]
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 []\T1/pcr/m/n/10 method.skeleton(generic, signature, file, external = FALSE, w
here) 
[1207] [1208] [1209]
Underfull \hbox (badness 2126) in paragraph at lines 4578--4586
[]\T1/ptm/m/n/10 For ad-di-tional in-for-ma-tion see doc-u-men-ta-tion for the 
im-por-tant steps: ([][][]\T1/pcr/m/n/10 setMethod[][][]()[]\T1/ptm/m/n/10 ,
[1210] [1211] [1212]
Underfull \hbox (badness 10000) in paragraph at lines 4815--4824
[]\T1/ptm/m/n/10 In prin-ci-ple, a generic func-tion could be any func-tion tha
t eval-u-ates a call to
[1213] [1214] [1215] [1216]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5203--5203
 []\T1/pcr/m/n/9 f3 <- function(x)UseMethod("f3") # an S3 generic to illustrate
 inheritance[] 
[1217]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5231--5231
 []\T1/pcr/m/n/9 stopifnot(identical(abs(y), abs(x))) # (version 2.9.0 or earli
er fails here)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5245--5245
 []\T1/pcr/m/n/9 ## The S3 method for classA and the closest inherited S3 metho
d for classB[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1218]
[1219]
Underfull \hbox (badness 10000) in paragraph at lines 5363--5364
[]\T1/pcr/m/n/10 unique.uncased <- function(x, incomparables = FALSE, ...)
[1220] [1221]
Underfull \hbox (badness 3803) in paragraph at lines 5520--5522
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1222] [1223] [1224]
Underfull \hbox (badness 1087) in paragraph at lines 5752--5757
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1225] [1226] [1227] [1228] [1229] [1230]
Underfull \hbox (badness 10000) in paragraph at lines 6218--6234
[]\T1/ptm/m/n/10 The de-fault method for []\T1/pcr/m/n/10 $initialize() []\T1/p
tm/m/n/10 is equiv-a-lent to in-vok-ing the method
[1231] [1232]
Underfull \hbox (badness 1248) in paragraph at lines 6351--6355
[]\T1/ptm/m/n/10 Typically, a spe-cial-ized []\T1/pcr/m/n/10 $initialize() []\T
1/ptm/m/n/10 method car-ries out its own com-pu-ta-tions,
Underfull \hbox (badness 1960) in paragraph at lines 6351--6355
\T1/ptm/m/n/10 then in-vokes []\T1/pcr/m/n/10 $initFields() []\T1/ptm/m/n/10 to
 per-form stan-dard ini-tial-iza-tion, as shown in the
[1233]
Underfull \hbox (badness 4647) in paragraph at lines 6506--6508
[]\T1/ptm/m/n/10 This method is equiv-a-lent to call-ing the gen-er-a-tor func-
tion re-turned by
[1234] [1235]
Underfull \hbox (badness 2875) in paragraph at lines 6655--6664
[]\T1/ptm/m/n/10 Reference classes can have va-lid-ity meth-ods in the same sen
se as any S4 class (see
Underfull \hbox (badness 1436) in paragraph at lines 6655--6664
[][][]\T1/pcr/m/n/10 setValidity[][][][]\T1/ptm/m/n/10 ). Such meth-ods are of-
ten a good idea; they will be called by call-ing
[1236]
Underfull \vbox (badness 10000) has occurred while \output is active [1237]
[1238] [1239]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6981 \aliasA{S4}{S3Part}{S4}
                               [1240]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 7017--7017
 []\T1/pcr/m/n/10 ## Create a new object from the class or use the replacement 
version of as().[] 
[1241] [1242]
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 []\T1/pcr/m/n/9 fit <- lm(sepal ~ Petal.Length + Petal.Width + Species, data =
 datasets::iris)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7212--7212
 []\T1/pcr/m/n/9 myReg <- setClass("myReg", slots = c(title = "character"), con
tains = "mlm")[] 
[1243]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Com
plex}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7237 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7239 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7240 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7242 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7243 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1244]
Underfull \hbox (badness 6708) in paragraph at lines 7317--7329
[]\T1/pcr/m/n/10 "abs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sign"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "sqrt"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ceiling"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "floor"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trunc"
[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cummax"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 2012) in paragraph at lines 7317--7329
[]\T1/pcr/m/n/10 "acosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "asin"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "asinh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "atan"[]\T1/p
tm/m/n/10 , []\T1/pcr/m/n/10 "atanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "exp"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "expm1"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "c
os"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3209) in paragraph at lines 7317--7329
[]\T1/pcr/m/n/10 "cosh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cospi"[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 "sin"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "sinh"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "sinpi"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tan"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanh"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "tanp
i"[]\T1/ptm/m/n/10 ,
[1245] [1246]
Underfull \hbox (badness 1694) in paragraph at lines 7480--7482
[]\T1/ptm/m/n/10 name of the class or (more ef-fi-ciently) the class def-i-ni-t
ion ob-ject (see
Underfull \hbox (badness 10000) in paragraph at lines 7504--7507
[]\T1/ptm/m/n/10 The typ-i-cal user level func-tion is []\T1/pcr/m/n/10 selectS
uperClasses() []\T1/ptm/m/n/10 which calls
[1247]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 7525--7525
 []\T1/pcr/m/n/9 selectSuperClasses("C", dropVirtual=TRUE, directOnly=FALSE)# d
itto w/o "Root"[] 
[1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258]
[1259] [1260]
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 []\T1/pcr/m/n/10 setGroupGeneric(name, def= , group=list(), valueClass=charact
er(), 
[1261]
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 []      \T1/pcr/m/n/10 by = character(), where = topenv(parent.frame()), class
Def =,[] 
[1262] [1263] [1264] [1265]
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 []\T1/pcr/m/n/9 ## "trackMultiCurve", by making the y, smooth slots into 1-col
umn matrices[] 
[1266] [1267] [1268]
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 []  \T1/pcr/m/n/9 setLoadAction(function(ns) assign("myCount", 0, envir = ns),
 "setCount")[] 
[1269] [1270] [1271]
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 []\T1/pcr/m/n/9 ## Using a short form for the signature, which matches like fo
rmal arguments[] 
[1272] [1273] [1274] [1275]
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 []\T1/pcr/m/n/9 ## Define a new generic function to compute the residual degre
es of freedom[] 
[1276]
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
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 []\T1/pcr/m/n/9 ## Not run:   [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,1
0] [,11] [,12][] 
[1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286]
Underfull \hbox (badness 10000) in paragraph at lines 10564--10566
[]\T1/ptm/m/n/10 Object of the orig-i-nal class; e.g., []\T1/pcr/m/n/10 "functi
on" []\T1/ptm/m/n/10 for class
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
Underfull \hbox (badness 1681) in paragraph at lines 10572--10576
[]\T1/pcr/m/n/10 "functionWithTrace" []\T1/ptm/m/n/10 ex-tends []\T1/pcr/m/n/10
 "function"[]\T1/ptm/m/n/10 . Each of the spe-cific classes ex-tends
[1287] [1288] [1289]) (./parallel-pkg.tex [1290]
Chapter 8.
Underfull \hbox (badness 2418) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/p
cr/m/n/10 "L\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][]
RNG[][][]: see
[1291]
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[]\T1/ptm/m/n/10 a vec-tor for []\T1/pcr/m/n/10 clusterApply []\T1/ptm/m/n/10 a
nd []\T1/pcr/m/n/10 clusterApplyLB[]\T1/ptm/m/n/10 , a ma-trix for
[1292] [1293]
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[]\T1/ptm/m/n/10 Two ex-cep-tions: []\T1/pcr/m/n/10 parLapply []\T1/ptm/m/n/10 
has ar-gu-ment []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 not []\T1/pcr/m/n/10 x []\T1
/ptm/m/n/10 for con-sis-tency with [][][]\T1/pcr/m/n/10 lapply[][][][]\T1/ptm/m
/n/10 , and
[1294]
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[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1295] [1296]
Underfull \hbox (badness 10000) in paragraph at lines 437--439
[]\T1/ptm/m/n/10 Character vec-tor of ad-di-tional ar-gu-ments for []\T1/pcr/m/
n/10 Rscript []\T1/ptm/m/n/10 such as
[1297] [1298] [1299] [1300] [1301]
Underfull \hbox (badness 1917) in paragraph at lines 771--780
[]\T1/pcr/m/n/10 mcfork []\T1/ptm/m/n/10 re-turns an ob-ject of the class []\T1
/pcr/m/n/10 "childProcess" []\T1/ptm/m/n/10 to the mas-ter and of class
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[]\T1/pcr/m/n/10 "masterProcess" []\T1/ptm/m/n/10 to the child: both the classe
s in-herit from class []\T1/pcr/m/n/10 "process"[]\T1/ptm/m/n/10 . If
[1302]
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 []         \T1/pcr/m/n/10 mc.cleanup = TRUE, mc.allow.recursive = TRUE, affini
ty.list = NULL)[] 
[1303] [1304] [1305]
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 []\T1/pcr/m/n/9 mclapply(list(A, A, A), first, mc.preschedule = FALSE, affinit
y.list = affL)[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 1059--1059
 []\T1/pcr/m/n/9 # To optimize the overall execution time elements of X are sch
eduled to suitable CPUs[] 
[1306] [1307]
Underfull \hbox (badness 5388) in paragraph at lines 1174--1179
[]\T1/pcr/m/n/10 mcparallel []\T1/ptm/m/n/10 re-turns an ob-ject of the class [
]\T1/pcr/m/n/10 "parallelJob" []\T1/ptm/m/n/10 which in-her-its from
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[]\T1/ptm/m/n/10 The be-haviour with []\T1/pcr/m/n/10 mc.set.seed = TRUE []\T1/
ptm/m/n/10 is dif-fer-ent only if
[1308]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1235--1235
 []\T1/pcr/m/n/9 mccollect(p, wait = FALSE, 10) # will retrieve the result (sin
ce it\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s fast)[] 
[1309]
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 []                 \T1/pcr/m/n/9 as.integer(runif(N, 1, 12)), as.integer(runif
(N, 1, 28)))[] 
[1310]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1365--1365
 []\T1/pcr/m/n/9 system.time(c <- unlist(mclapply(dates, as.POSIXct,  format = 
"%Y-%m-%d")))[] 
Underfull \hbox (badness 1577) in paragraph at lines 1394--1397
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/pcr/m/n/10 
.Random.seed []\T1/ptm/m/n/10 when the
[1311]
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[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 nextRNGStream []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 nextRNGSubStream[]\T1/ptm/m/n/10 , a value which can be as-signed to
[1312] [1313]) (./splines-pkg.tex [1314]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/pcr/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 499--499
 []\T1/pcr/m/n/9 ispl <- polySpline(interpSpline( weight ~ height,  women, bSpl
ine = TRUE))[] 
[1323]
Underfull \hbox (badness 1043) in paragraph at lines 600--602
[]\T1/ptm/m/n/10 An in-te-ger be-tween 0 and []\T1/pcr/m/n/10 splineOrder(objec
t) - 1 []\T1/ptm/m/n/10 spec-i-fy-ing the
[1324] [1325]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 715--715
 []\T1/pcr/m/n/9 Matrix::drop0(zapsmall(6*splineDesign(knots = 1:40, x = 4:37, 
sparse = TRUE)))[] 
[1326] [1327] [1328]) (./stats-pkg.tex
Chapter 10.
[1329]
Underfull \hbox (badness 1077) in paragraph at lines 71--74
[]\T1/pcr/m/n/10 .MFclass() []\T1/ptm/m/n/10 re-turns a char-ac-ter string, one
 of []\T1/pcr/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ordered"[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 "factor"[]\T1/ptm/m/n/10 ,
Overfull \hbox (69.18036pt too wide) in paragraph at lines 91--91
 []\T1/pcr/m/n/9 (xl <- .getXlevels(terms(mf), mf)) # a list with one entry " $
 Species" with 3 levels:[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 94--94
 []  \T1/pcr/m/n/9 identical(.getXlevels(terms(mc), mc), xl[0]) # a empty named
 list, as no factors[] 
[1330] [1331] [1332] [1333] [1334]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 445--445
 []\T1/pcr/m/n/9 add1(glm.D93, scope = ~outcome*treatment, test = "Rao") ## Pea
rson Chi-square[] 
[1335]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 468--468
 []\T1/pcr/m/n/10 addmargins(A, margin = seq_along(dim(A)), FUN = sum, quiet = 
FALSE) 
[1336] [1337] [1338] [1339] [1340] [1341]
Underfull \hbox (badness 1024) in paragraph at lines 887--889
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/pcr/m/n/10 l
m []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for
[1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1626--1626
 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1629--1629
 []          \T1/pcr/m/n/10 yleft, yright, rule = 1, f = 0, ties = mean, na.rm 
= TRUE)[] 
[1353] [1354]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1776--1776
 []                 \T1/pcr/m/n/9 approx(xn, yn, xout=xout, method=M, rule=R, n
a.rm=na.)$y),[] 
[1355]
Overfull \hbox (47.58038pt too wide) in paragraph at lines 1788--1788
 []\T1/pcr/m/n/9 (amy <- approx(x, y, xout = x)$y) # warning, can be avoided by
 specifying \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ties=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 :[
] 
[1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366]
[1367] [1368] [1369]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2806--2806
 []\T1/pcr/m/n/10 ARMAacf(ar = numeric(), ma = numeric(), lag.max = r, pacf = F
ALSE) 
[1370] [1371] [1372] [1373]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3054--3054
 []\T1/pcr/m/n/9 lines(ave(breaks, wool, tension, FUN = median), type = "s", co
l = "green")[] 
[1374] [1375] [1376]
Underfull \hbox (badness 10000) in paragraph at lines 3265--3267
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Bartlett test of homo
geneity of
[1377]
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 []\T1/pcr/m/n/10 pbeta(q, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 3315--3315
 []\T1/pcr/m/n/10 qbeta(p, shape1, shape2, ncp = 0, lower.tail = TRUE, log.p = 
FALSE)[] 
[1378] [1379] [1380] [1381]
Package amsmath Warning: Foreign command \atopwithdelims;
(amsmath)                \frac or \genfrac should be used instead
(amsmath)                 on input line 3644.
[1382]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3710--3710
 []\T1/pcr/m/n/9 plot (k, dbinom(k, n, pi/10, log = TRUE), type = "l", ylab = "
log density",[] 
[1383] [1384] [1385] [1386]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3989--3989
 []\T1/pcr/m/n/10 Box.test(x, lag = 1, type = c("Box-Pierce", "Ljung-Box"), fit
df = 0) 
[1387] [1388] [1389] [1390] [1391]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 4278--4278
 []\T1/pcr/m/n/10 pcauchy(q, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 4279--4279
 []\T1/pcr/m/n/10 qcauchy(p, location = 0, scale = 1, lower.tail = TRUE, log.p 
= FALSE)[] 
[1392] [1393] [1394] [1395]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4520--4520
 []\T1/pcr/m/n/9 chisq.test(x, p = p)            #               maybe doubtful
, but is ok![] 
[1396] [1397]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 4695--4695
 []  \T1/pcr/m/n/9 plot(pp, sort(pchisq(rr <- rchisq(n, df = df, ncp = L), df =
 df, ncp = L)),[] 
[1398] [1399]
Underfull \hbox (badness 3989) in paragraph at lines 4789--4796
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1400] [1401] [1402] [1403] [1404]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5178--5178
 []\T1/pcr/m/n/9 constrOptim(c(-1.2,0.9), fr, grr, ui = rbind(c(-1,0), c(0,-1))
, ci = c(-1,-1))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5180--5180
 []\T1/pcr/m/n/9 constrOptim(c(.5,0), fr, grr, ui = rbind(c(-1,0), c(1,-1)), ci
 = c(-0.9,0.1))[] 
[1405] [1406] [1407] [1408]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 5402--5402
 []\T1/pcr/m/n/9 ## using sparse contrasts: % useful, once model.matrix() works
 with these :[] 
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 []\T1/pcr/m/n/10 convolve(x, y, conj = TRUE, type = c("circular", "open", "fil
ter")) 
[1409] [1410] [1411]
Underfull \hbox (badness 1436) in paragraph at lines 5630--5635
[]\T1/ptm/m/n/10 an op-tional char-ac-ter string giv-ing a method for com-put-i
ng co-vari-ances
Underfull \hbox (badness 1377) in paragraph at lines 5630--5635
\T1/ptm/m/n/10 in the pres-ence of miss-ing val-ues. This must be (an ab-bre-vi
-a-tion of)
Underfull \hbox (badness 1448) in paragraph at lines 5630--5635
\T1/ptm/m/n/10 one of the strings []\T1/pcr/m/n/10 "everything"[]\T1/ptm/m/n/10
 , []\T1/pcr/m/n/10 "all.obs"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "complete.obs"
[]\T1/ptm/m/n/10 ,
[1412] [1413]
Underfull \vbox (badness 10000) has occurred while \output is active [1414]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5833--5833
 []         \T1/pcr/m/n/10 exact = NULL, conf.level = 0.95, continuity = FALSE,
 ...)[] 
[1415] [1416]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 6000--6000
 []\T1/pcr/m/n/10 cov.wt(x, wt = rep(1/nrow(x), nrow(x)), cor = FALSE, center =
 TRUE, 
[1417] [1418] [1419]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 6185--6185
 []\T1/pcr/m/n/10 decompose(x, type = c("additive", "multiplicative"), filter =
 NULL) 
[1420] [1421]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 6293--6293
 []\T1/pcr/m/n/10 reformulate(termlabels, response = NULL, intercept = TRUE, en
v = parent.frame())[] 
[1422] [1423] [1424] [1425]
Underfull \hbox (badness 5954) in paragraph at lines 6556--6558
[]\T1/ptm/m/n/10 logical in-di-cat-ing if a box around the plot should be drawn
, see
[1426]
Underfull \hbox (badness 2503) in paragraph at lines 6638--6641
[]\T1/ptm/m/n/10 Objects of class []\T1/pcr/m/n/10 "hclust" []\T1/ptm/m/n/10 ca
n be con-verted to class []\T1/pcr/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing 
method
Underfull \hbox (badness 5563) in paragraph at lines 6642--6644
[]\T1/pcr/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g
ram []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also
Underfull \hbox (badness 1655) in paragraph at lines 6645--6650
\T1/ptm/m/n/10 has []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y [
]\T1/ptm/m/n/10 (and op-tional fur-ther ar-gu-ments) as branches. Note that be-
fore \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.1.2,
[1427]
Underfull \hbox (badness 7238) in paragraph at lines 6681--6684
[][][]\T1/pcr/m/n/10 dendrapply[][][] []\T1/ptm/m/n/10 for ap-ply-ing a func-ti
on to \T1/ptm/m/it/10 each \T1/ptm/m/n/10 node. [][][]\T1/pcr/m/n/10 order.dend
rogram[][][] []\T1/ptm/m/n/10 and
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6693--6693
 []\T1/pcr/m/n/9 str(dend1, max.level = 2, last.str =  "\TS1/pcr/m/n/9 '\T1/pcr
/m/n/9 ") # only the first two sub-levels[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6716--6716
 []\T1/pcr/m/n/9 plot(dend2$lower[[3]], nodePar = list(col = 4), horiz = TRUE, 
type = "tr")[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6731--6731
 []\T1/pcr/m/n/9 ## merge() all parts back (using default \TS1/pcr/m/n/9 '\T1/p
cr/m/n/9 height\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 instead of original one):[] 
[1428]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6746--6746
 []\T1/pcr/m/n/9 plot(d3, nodePar= nP, edgePar = list(col = "gray", lwd = 2), h
oriz = TRUE)[] 
[1429] [1430] [1431]
Underfull \vbox (badness 10000) has occurred while \output is active [1432]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7014--7014
 []                     \T1/pcr/m/n/9 function(k) density(kernel = k, give.Rker
n = TRUE))))[] 
[1433] [1434]
Underfull \vbox (badness 10000) has occurred while \output is active [1435]
[1436] [1437] [1438]
Underfull \hbox (badness 10000) in paragraph at lines 7414--7418
[]\T1/pcr/m/n/10 "maximum"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "manhattan"[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 "canberra"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "bi
nary" []\T1/ptm/m/n/10 or
[1439]
Underfull \hbox (badness 6493) in paragraph at lines 7517--7520
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][]
\T1/pcr/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the
[1440] [1441]
Underfull \hbox (badness 10000) in paragraph at lines 7654--7657
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/pcr/m/n/10 ht
tps : / / CRAN . R-[]project . org / view =
[1442] [1443] [1444] [1445] [1446] [1447]
Underfull \hbox (badness 10000) in paragraph at lines 8066--8071
[]\T1/ptm/m/n/10 Each row of the re-sult-ing ma-trix con-sists of se-quences []
\T1/pcr/m/n/10 x[t][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 x[t-1][]\T1/ptm/m/n/10 ,
 ...,
[1448] [1449] [1450] [1451] [1452] [1453]
Underfull \hbox (badness 1210) in paragraph at lines 8421--8423
[]\T1/ptm/m/n/10 Components of []\T1/pcr/m/n/10 control []\T1/ptm/m/n/10 can al
so be sup-plied as named ar-gu-ments to
[1454] [1455] [1456] [1457] [1458] [1459]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 8887--8887
 []\T1/pcr/m/n/9 glm.qD93 <- glm(counts ~ outcome + treatment, d.AD, family = q
uasipoisson())[] 
[1460]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 8932--8932
 []\T1/pcr/m/n/9 ## Not run: glm(y ~ x, family = quasi(variance = "mu^3", link 
= "log")) # fails[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 8935--8935
 []\T1/pcr/m/n/9 glm(y ~ x, family = quasi(variance = "mu(1-mu)", link = "logit
"), start = c(0,1))[] 
[1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 9515--9515
 []           \T1/pcr/m/n/9 dimnames = list(income = c("< 15k", "15-25k", "25-4
0k", "> 40k"),[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 9516--9516
 []                     \T1/pcr/m/n/9 satisfaction = c("VeryD", "LittleD", "Mod
erateS", "VeryS")))[] 
[1469] [1470] [1471]
Underfull \hbox (badness 7291) in paragraph at lines 9695--9697
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Fligner-Killeen test 
of homogeneity of
[1472] [1473] [1474] [1475] [1476] [1477] [1478]
Underfull \hbox (badness 6944) in paragraph at lines 10187--10193
[][][]\T1/pcr/m/n/10 ftable.formula[][][] []\T1/ptm/m/n/10 for the for-mula in-
ter-face (which al-lows a []\T1/pcr/m/n/10 data = . []\T1/ptm/m/n/10 ar-gu-ment
);
[1479] [1480] [1481]
Underfull \hbox (badness 3758) in paragraph at lines 10401--10404
[]\T1/ptm/m/n/10 See also [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or
[1482] [1483] [1484] [1485]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 10645--10645
 []    \T1/pcr/m/n/10 x = FALSE, y = TRUE, singular.ok = TRUE, contrasts = NULL
, ...)[] 
Underfull \hbox (badness 4518) in paragraph at lines 10671--10676
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1486]
Underfull \hbox (badness 4132) in paragraph at lines 10710--10714
[]\T1/ptm/m/n/10 the method to be used in fit-ting the model. The de-fault meth
od
Underfull \hbox (badness 1112) in paragraph at lines 10764--10770
[]\T1/ptm/m/n/10 A spec-i-fi-ca-tion of the form []\T1/pcr/m/n/10 first:second 
[]\T1/ptm/m/n/10 in-di-cates the set of terms ob-tained by tak-
[1487]
Underfull \hbox (badness 10000) in paragraph at lines 10815--10818
[]\T1/ptm/m/n/10 The generic ac-ces-sor func-tions [][][]\T1/pcr/m/n/10 coeffic
ients[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 effects[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 fitted.values []\T1/ptm/m/n/10 and
[1488] [1489] [1490]
Underfull \hbox (badness 2142) in paragraph at lines 11032--11035
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1491]
Underfull \hbox (badness 1708) in paragraph at lines 11113--11117
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1492]
Underfull \hbox (badness 10000) in paragraph at lines 11155--11161
[][][]\T1/pcr/m/n/10 glm[][][] []\T1/ptm/m/n/10 for com-put-ing []\T1/pcr/m/n/1
0 glm.obj[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 anova.glm[][][][]\T1/ptm/m/n/1
0 ; the cor-re-spond-ing \T1/ptm/m/it/10 generic \T1/ptm/m/n/10 func-tions,
Underfull \hbox (badness 1418) in paragraph at lines 11193--11198
[]\T1/pcr/m/n/10 "average" []\T1/ptm/m/n/10 (= UP-GMA), []\T1/pcr/m/n/10 "mcqui
tty" []\T1/ptm/m/n/10 (= WPGMA), []\T1/pcr/m/n/10 "median" []\T1/ptm/m/n/10 (=
[1493] [1494]
Underfull \hbox (badness 2635) in paragraph at lines 11326--11329
\T1/ptm/m/n/10 There are [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/n/10 , [][
][]\T1/pcr/m/n/10 plot[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 identify []\
T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 identify.hclust[][][][]\T1/ptm/m/n/10 )
 meth-ods and the
[1495] [1496] [1497]
Underfull \hbox (badness 1694) in paragraph at lines 11509--11512
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1498]
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 []\T1/pcr/m/n/9 heatmap(Ca, Rowv = FALSE, symm = TRUE, RowSideColors = cc, Col
SideColors = cc,[] 
[1499]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 11640--11640
 []            \T1/pcr/m/n/10 optim.start = c(alpha = 0.3, beta = 0.1, gamma = 
0.1),[] 
Underfull \hbox (badness 10000) in paragraph at lines 11653--11657
[]\T1/ptm/m/n/10 Character string to se-lect an []\T1/pcr/m/n/10 "additive" []\
T1/ptm/m/n/10 (the de-fault) or
[1500] [1501] [1502] [1503] [1504]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 11975--11975
 []\T1/pcr/m/n/9 identify(hci, function(k) barplot(table(iris[k,5]), col = 2:4)
, DEV.FUN = nD)[] 
[1505]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11990 \aliasA{hat}{influence.measures}{hat}
                                             
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12050--12050
 []\T1/pcr/m/n/10 cooks.distance(model, infl = lm.influence(model, do.coef = FA
LSE),[] 
[1506]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12062--12062
 []\T1/pcr/m/n/10 hatvalues(model, infl = lm.influence(model, do.coef = FALSE),
 ...)[] 
Underfull \hbox (badness 1062) in paragraph at lines 12115--12120
[]\T1/ptm/m/n/10 The op-tional []\T1/pcr/m/n/10 infl[]\T1/ptm/m/n/10 , []\T1/pc
r/m/n/10 res []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 sd []\T1/ptm/m/n/10 ar-gu-me
nts are there to en-cour-age the use of these di-
Underfull \hbox (badness 1052) in paragraph at lines 12132--12134
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists 
mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1507] [1508] [1509] [1510]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12387--12387
 []                 \T1/pcr/m/n/10 type = c("l", "p", "b", "o", "c"), legend = 
TRUE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 12388--12388
 []                 \T1/pcr/m/n/10 trace.label = deparse1(substitute(trace.fact
or)),[] 
[1511] [1512] [1513] [1514] [1515] [1516]
Underfull \hbox (badness 10000) in paragraph at lines 12734--12736
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/pcr/m/n/10 solve.de
fault[][][] []\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 SSinit =
Underfull \hbox (badness 4739) in paragraph at lines 12757--12759
[]\T1/ptm/m/n/10 the es-ti-mate at time $\OML/cmm/m/it/10 t \OMS/cmsy/m/n/10 ^^
@ \OT1/cmr/m/n/10 1$ \T1/ptm/m/n/10 of the state un-cer-tainty ma-trix $\OML/cm
m/m/it/10 Q$ \T1/ptm/m/n/10 (not up-dated by
[1517] [1518] [1519] [1520] [1521]
Underfull \hbox (badness 3417) in paragraph at lines 13064--13066
[]\T1/ptm/m/n/10 an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of class []\T1/pcr/
m/n/10 "kmeans"[]\T1/ptm/m/n/10 , typ-i-cally the re-sult []\T1/pcr/m/n/10 ob [
]\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 ob <-
Underfull \hbox (badness 2894) in paragraph at lines 13070--13074
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
Underfull \hbox (badness 1038) in paragraph at lines 13070--13074
\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 "Hartigan-Wong"[]\T1/ptm/m/n/10 ): if pos-i-ti
ve (or true), trac-ing in-for-ma-tion on the
[1522] [1523] [1524] [1525] [1526] [1527]
Underfull \hbox (badness 1496) in paragraph at lines 13493--13499
[]\T1/ptm/m/n/10 Gunar Schr�er and Di-et-rich Tren-kler (1995). Ex-act and Ran-
dom-iza-tion Dis-tri-bu-tions of
[1528] [1529] [1530] [1531]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 13742--13742
 []\T1/pcr/m/n/9 lag.plot(sqrt(sunspots), set.lags = c(1:4, 9:12), pch = ".", c
ol = "gold")[] 
[1532]
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 []\T1/pcr/m/n/9 dimnames(cAS) <- list(paste("it =", format(1:10)), c("intercep
t", "slope"))[] 
[1533]
Underfull \hbox (badness 4518) in paragraph at lines 13891--13896
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1534] [1535] [1536]
Underfull \hbox (badness 10000) in paragraph at lines 14092--14096
[]\T1/ptm/m/n/10 More []\T1/pcr/m/n/10 lm() []\T1/ptm/m/n/10 ex-am-ples are ava
il-able e.g., in [][][]\T1/pcr/m/n/10 anscombe[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 attitude[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 freeny[][][]
[]\T1/ptm/m/n/10 ,
[1537] [1538] [1539] [1540] [1541]
Underfull \hbox (badness 1163) in paragraph at lines 14431--14439
\T1/ptm/m/n/10 els, [][][]\T1/pcr/m/n/10 influence[][][] []\T1/ptm/m/n/10 (etc 
on that page) for re-gres-sion di-ag-nos-tics, [][][]\T1/pcr/m/n/10 weighted.re
siduals[][][][]\T1/ptm/m/n/10 ,
[1542] [1543]
Underfull \hbox (badness 4518) in paragraph at lines 14551--14556
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1544] [1545]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 14739--14739
 []\T1/pcr/m/n/10 plogis(q, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 14740--14740
 []\T1/pcr/m/n/10 qlogis(p, location = 0, scale = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
[1546] [1547] [1548] [1549] [1550]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15083--15083
 []\T1/pcr/m/n/10 plnorm(q, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 15084--15084
 []\T1/pcr/m/n/10 qlnorm(p, meanlog = 0, sdlog = 1, lower.tail = TRUE, log.p = 
FALSE)[] 
[1551] [1552]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 15177--15177
 []\T1/pcr/m/n/10 lowess(x, y = NULL, f = 2/3, iter = 3, delta = 0.01 * diff(ra
nge(x))) 
[1553] [1554] [1555] [1556] [1557] [1558]
Underfull \hbox (badness 2726) in paragraph at lines 15586--15589
[]\T1/ptm/m/n/10 character; one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m/n/10 , [
]\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cauchit"[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 "cloglog"[]\T1/ptm/m/n/10 ,
[1559]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 15680--15680
 []\T1/pcr/m/n/9 stopifnot(all.equal(pfm, pf2)) ## was off (rel.diff. 0.0766) i
n R <= 3.5.0[] 
[1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] [1569]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 16309--16309
 []\T1/pcr/m/n/9 a <- model.frame(cbind(ncases,ncontrols) ~ agegp + tobgp + alc
gp, data = esoph) 
[1570] [1571]
Underfull \hbox (badness 1490) in paragraph at lines 16456--16461
\T1/ptm/m/n/10 those spec-i-fied in []\T1/pcr/m/n/10 ... []\T1/ptm/m/n/10 which
 are re-cy-cled to the num-ber of data frame rows. Un-like
[1572]
Underfull \hbox (badness 1648) in paragraph at lines 16524--16526
[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
[1573]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 16609--16609
 []\T1/pcr/m/n/9 model.matrix(~ a + b, dd, contrasts.arg = list(a = "contr.sum"
, b = contr.poly))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 16610--16610
 []\T1/pcr/m/n/9 m.orth <- model.matrix(~a+b, dd, contrasts.arg = list(a = "con
tr.helmert"))[] 
[1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 17167--17167
 []\T1/pcr/m/n/9 stopifnot(all(na.omit(1:3) == 1:3))  # does not affect objects
 with no NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s[] 
[1583] [1584] [1585]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17399--17399
 []\T1/pcr/m/n/9 persp(x, size, dnb <- outer(x, size, function(x,s) dnbinom(x, 
s, prob = 0.4)),[] 
[1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595]
Underfull \vbox (badness 10000) has occurred while \output is active [1596]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 18121--18121
 []\T1/pcr/m/n/9 ## adjusting the convergence test by adding \TS1/pcr/m/n/9 '\T
1/pcr/m/n/9 scaleOffset\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 to its denominator RSS:[]
 
Underfull \vbox (badness 10000) has occurred while \output is active [1597]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 18139--18139
 []\T1/pcr/m/n/9 ## Here, requiring close convergence, must use more accurate n
umerical differentiation,[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 18140--18140
 []\T1/pcr/m/n/9 ## as this typically gives Error: "step factor .. reduced belo
w \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 minFactor\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 .."[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 18144--18144
 []\T1/pcr/m/n/9 ## central differencing works here typically (PR#18165: not co
nverging on *some*):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 18145--18145
 []\T1/pcr/m/n/9 ctr2 <- nls.control(nDcentral=TRUE, tol = 8e-8, # <- even smal
ler than above[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 18148--18148
 []        \T1/pcr/m/n/9 (grepl("^aarch64.*linux", R.version$platform) && grepl
("^NixOS", osVersion)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 18180--18180
 []              \T1/pcr/m/n/9 start = list(a = rep(b[2], 21), b = rep(b[3], 21
), th = b[1]))[] 
[1598] [1599] [1600]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 18356--18356
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData(expression(log(conc)), expression(densi
ty), DNase.2)[] 
[1601]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 18403--18403
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 18450--18450
 []\T1/pcr/m/n/9 DN.srt <- sortedXyData( expression(log(conc)), expression(dens
ity), DNase.2 )[] 
[1602] [1603] [1604] [1605]
Overfull \hbox (102.78088pt too wide) in paragraph at lines 18663--18663
 []             \T1/pcr/m/n/10 eps = .Machine$double.eps ^ (1/if(central) 3 els
e 2), central = FALSE)[] 
[1606] [1607] [1608] [1609] [1610]
Underfull \hbox (badness 1248) in paragraph at lines 18978--18981
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 1661) in paragraph at lines 18991--18995
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 1478) in paragraph at lines 18999--19003
\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 control$trace []\T1/ptm/m/n/10 is pos-i-tive
. De-faults to ev-ery 10 it-er-a-tions for []\T1/pcr/m/n/10 "BFGS" []\T1/ptm/m/
n/10 and
[1611]
Underfull \hbox (badness 2042) in paragraph at lines 19057--19059
[]\T1/ptm/m/n/10 indicates an er-ror from the []\T1/pcr/m/n/10 "L-BFGS-B" []\T1
/ptm/m/n/10 method; see com-po-nent
[1612]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 19163--19163
 []      \T1/pcr/m/n/9 lower = rep(2, 25), upper = rep(4, 25)) # par[24] is *no
t* at boundary[] 
[1613]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19206--19206
 []     \T1/pcr/m/n/9 main = "initial solution of traveling salesman problem", 
axes = FALSE)[] 
Overfull \hbox (123.1803pt too wide) in paragraph at lines 19224--19224
 []\T1/pcr/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 
Overfull \hbox (96.18033pt too wide) in paragraph at lines 19227--19227
 []\T1/pcr/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 19247--19247
 []\T1/pcr/m/n/10 optimize(f, interval, ..., lower = min(interval), upper = max
(interval), 
[1614]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 19250--19250
 []\T1/pcr/m/n/10 optimise(f, interval, ..., lower = min(interval), upper = max
(interval),[] 
Underfull \hbox (badness 2564) in paragraph at lines 19285--19296
[]\T1/ptm/m/n/10 The func-tion []\T1/pcr/m/n/10 f []\T1/ptm/m/n/10 is never eva
l-u-ated at two points closer to-gether than $\OML/cmm/m/it/10 ^^O$$\OMS/cmsy/m
/n/10 j\OML/cmm/m/it/10 x[]\OMS/cmsy/m/n/10 j \OT1/cmr/m/n/10 + (\OML/cmm/m/it/
10 tol=\OT1/cmr/m/n/10 3)$\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1082) in paragraph at lines 19285--19296
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 ^^O$ \T1/ptm/m/n/10 is ap-prox-i-mately 
[]\T1/pcr/m/n/10 sqrt([][].Machine[][][]$double.eps) []\T1/ptm/m/n/10 and $\OML
/cmm/m/it/10 x[]$ \T1/ptm/m/n/10 is the fi-nal ab-scissa
[1615]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19348--19348
 []\T1/pcr/m/n/9 f  <- function(x) ifelse(x > -1, ifelse(x < 4, exp(-1/abs(x - 
1)), 10), 10)[] 
[1616] [1617] [1618]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 19575--19575
 []\T1/pcr/m/n/9 matplot(p, p.adj, ylab="p.adjust(p, meth)", type = "l", asp = 
1, lty = 1:6,[] 
[1619] [1620]
Underfull \hbox (badness 1337) in paragraph at lines 19686--19689
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1621] [1622] [1623] [1624] [1625]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20005--20005
 []      \T1/pcr/m/n/10 par.fit = list(col = "red", cex = 1.5, pch = 13, lwd = 
1.5),[] 
[1626] [1627]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 20093--20093
 []       \T1/pcr/m/n/10 expression("Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s dist
 vs Leverage* " * h[ii] / (1 - h[ii]))),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 20095--20095
 []              \T1/pcr/m/n/10 panel.smooth(x, y, iter=iter.smooth, ...) else 
points,[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 20097--20097
 []     \T1/pcr/m/n/10 ask = prod(par("mfcol")) < length(which) && dev.interact
ive(),[] 
[1628]
Underfull \hbox (badness 10000) in paragraph at lines 20157--20163
\T1/pcr/m/n/10 "bottomleft", legend = "Cook\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 s di
stance", lty = cook.lty,
Underfull \hbox (badness 10000) in paragraph at lines 20157--20163
\T1/pcr/m/n/10 col = cook.col, text.col = cook.col, bty = "n", x.intersp
Underfull \hbox (badness 10000) in paragraph at lines 20165--20171
[]\T1/ptm/m/n/10 the num-ber of ro-bust-ness it-er-a-tions, the ar-gu-ment []\T
1/pcr/m/n/10 iter []\T1/ptm/m/n/10 in
Underfull \hbox (badness 10000) in paragraph at lines 20176--20179
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 1 or 2, to be used in []\T1/pcr/m
/n/10 ylim <-
[1629] [1630] [1631] [1632] [1633]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 20485--20485
 []                    \T1/pcr/m/n/10 main = NULL, ci.col = "blue", ci.lty = 3,
 ...)[] 
Underfull \hbox (badness 1194) in paragraph at lines 20495--20498
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1634]
Underfull \hbox (badness 1107) in paragraph at lines 20553--20555
[]\T1/ptm/m/n/10 numeric vec-tor of ab-scissa val-ues at which to eval-u-ate []
\T1/pcr/m/n/10 x[]\T1/ptm/m/n/10 . De-faults to
[1635]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20608--20608
 []\T1/pcr/m/n/9 plot(sfun.2);plot(sfun.2, xval = tt, add = TRUE, col = "orange
") # all colors[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 20615--20615
 []\T1/pcr/m/n/9 legend(2.5, 1.9, paste("f =", c(0, 0.2, 1)), col = 1:3, lty = 
1, y.intersp = 1)[] 
[1636] [1637]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 20709--20709
 []\T1/pcr/m/n/9 title("plot(ts(..), axes=FALSE, ann=FALSE, frame.plot=TRUE, ma
r..., oma...)")[] 
[1638] [1639]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 20838--20838
 []    \T1/pcr/m/n/9 ppois(10*(15:25), lambda = 100, lower.tail = FALSE)  # no 
cancellation[] 
[1640]
Underfull \hbox (badness 7740) in paragraph at lines 20901--20903
[]\T1/ptm/m/n/10 the char-ac-ter string []\T1/pcr/m/n/10 "Exact Poisson test" [
]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 "Comparison of
Overfull \hbox (6.78088pt too wide) in paragraph at lines 20949--20949
 []\T1/pcr/m/n/10 poly(x, ..., degree = 1, coefs = NULL, raw = FALSE, simple = 
FALSE) 
[1641]
Underfull \hbox (badness 10000) in paragraph at lines 21005--21007
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 poly(*, simple=TRUE)[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 polym(*, coefs=<non-NULL>)[]\T1/ptm/m/n/10 , and
[1642]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 21042--21042
 [] \T1/pcr/m/n/9 zm <- zapsmall(polym (    1:4, c(1, 4:6),  degree = 3)) # or 
just poly():[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 21047--21047
 []\T1/pcr/m/n/9 ## poly(<matrix>, df) --- used to fail till July 14 (vive la F
rance!), 2017:[] 
[1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653]
[1654] [1655]
Overfull \hbox (58.38037pt too wide) in paragraph at lines 21902--21902
 []          \T1/pcr/m/n/9 all.equal(pz3$sdev, pZ$sdev, tolerance = 1e-15)) # e
xactly equal typically[] 
[1656]
Underfull \hbox (badness 6859) in paragraph at lines 21969--21976
[][][]\T1/pcr/m/n/10 predict.glm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 p
redict.lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.loess[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.nls[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 predict.poly[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 21980--21986
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/pcr/m/n/10 predict.ar[
][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 ,
[1657] [1658] [1659] [1660] [1661]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 22268--22268
 []        \T1/pcr/m/n/10 rankdeficient = c("warnif", "simple", "non-estim", "N
A", "NAwarn"),[] 
Underfull \hbox (badness 10000) in paragraph at lines 22294--22297
[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string
 spec-i-fy-ing what should hap-pen in the
Underfull \hbox (badness 10000) in paragraph at lines 22294--22297
\T1/ptm/m/n/10 case of a rank de-fi-cient model, i.e., when []\T1/pcr/m/n/10 ob
ject$rank <
[1662]
Underfull \hbox (badness 5832) in paragraph at lines 22299--22304
\T1/ptm/m/n/10 cases, i.e., vec-tors not in the same pre-dic-tor sub-space as t
he
Underfull \hbox (badness 8151) in paragraph at lines 22299--22304
\T1/ptm/m/n/10 orig-i-nal data (with tol-er-ance []\T1/pcr/m/n/10 tol[]\T1/ptm/
m/n/10 ). In that case, the non-
Underfull \hbox (badness 1184) in paragraph at lines 22299--22304
\T1/ptm/m/n/10 estimable in-dices are also re-turned as at-tribute []\T1/pcr/m/
n/10 "non-estim" []\T1/ptm/m/n/10 (see
[1663] [1664] [1665] [1666] [1667] [1668] [1669]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 22767--22767
 []         \T1/pcr/m/n/10 subset = rep_len(TRUE, nrow(as.matrix(x))), fix_sign
 = TRUE, ...)[] 
[1670] [1671] [1672] [1673]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 23051--23051
 []             \T1/pcr/m/n/10 has.Pvalue = nc >= 4L && length(cn <- colnames(x
)) &&[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 23052--23052
 []                          \T1/pcr/m/n/10 substr(cn[nc], 1L, 3L) %in% c("Pr("
, "p-v"),[] 
[1674] [1675] [1676] [1677] [1678]
Underfull \hbox (badness 1337) in paragraph at lines 23378--23384
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1679] [1680] [1681] [1682] [1683]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 23690--23690
 []\T1/pcr/m/n/9 with(d, qqplot(Female, Male, pch = 19, xlim = c(-31, 31), ylim
 = c(-31, 31),[] 
[1684] [1685] [1686] [1687]
Underfull \hbox (badness 10000) in paragraph at lines 24002--24004
[]\T1/ptm/m/n/10 Wicklin, R. (2017) Sam-ple quan-tiles: A com-par-i-son of 9 de
f-i-ni-tions;
Underfull \hbox (badness 10000) in paragraph at lines 24002--24004
\T1/ptm/m/n/10 SAS Blog. [][]$\T1/pcr/m/n/10 https : / / blogs . sas . com / co
ntent / iml / 2017 / 05 / 24 /
[1688]
Underfull \hbox (badness 10000) in paragraph at lines 24009--24010
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/pcr/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _
[1689]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 24120--24120
 []       \T1/pcr/m/n/10 method = c("non.compact", "row.compact", "col.compact"
, "compact"),[] 
[1690]
Underfull \hbox (badness 1028) in paragraph at lines 24178--24181
[]\T1/ptm/m/n/10 further ar-gu-ments to be passed to or from meth-ods; for []\T
1/pcr/m/n/10 write() []\T1/ptm/m/n/10 and
[1691] [1692]
Underfull \hbox (badness 10000) in paragraph at lines 24293--24296
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1693]
Underfull \hbox (badness 7099) in paragraph at lines 24348--24350
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 reorder[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
[1694]
Underfull \hbox (badness 7099) in paragraph at lines 24412--24414
[]\T1/ptm/m/n/10 This, as [][][]\T1/pcr/m/n/10 relevel[][][]()[]\T1/ptm/m/n/10 
, is a spe-cial case of sim-ply call-ing [][][]\T1/pcr/m/n/10 factor[][][](x, l
evels =
Overfull \hbox (31.3804pt too wide) in paragraph at lines 24447--24447
 []\T1/pcr/m/n/9 bymedianR <- with(InsectSprays, reorder(spray, count, median, 
decreasing=TRUE))[] 
[1695] [1696]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 24523--24523
 []\T1/pcr/m/n/9 plot(reorder(dd, 10:1, agglo.FUN = mean), main = "reorder(dd, 
10:1, mean)")[] 
[1697] [1698]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 24640--24640
 []\T1/pcr/m/n/10 #         varying = ___,  # list / matrix / vector (use with 
care)[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 24641--24641
 []\T1/pcr/m/n/10 #         v.names = ___,  # vector of variable names in long 
format[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 24642--24642
 []\T1/pcr/m/n/10 #         timevar, times, # name / values of constructed time
 variable[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 24643--24643
 []\T1/pcr/m/n/10 #         idvar, ids)     # name / values of constructed id v
ariable[] 
[1699] [1700]
Underfull \hbox (badness 10000) in paragraph at lines 24803--24808
[][][]\T1/pcr/m/n/10 stack[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 aperm[]
[][][]\T1/ptm/m/n/10 ; [][][]\T1/pcr/m/n/10 relist[][][] []\T1/ptm/m/n/10 for r
e-shap-ing the re-sult of [][][]\T1/pcr/m/n/10 unlist[][][][]\T1/ptm/m/n/10 . [
][][]\T1/pcr/m/n/10 xtabs[][][] []\T1/ptm/m/n/10 and
Underfull \hbox (badness 2495) in paragraph at lines 24803--24808
[][][]\T1/pcr/m/n/10 as.data.frame.table[][][] []\T1/ptm/m/n/10 for cre-at-ing 
con-tin-gency ta-bles and con-vert-ing them back to
Overfull \hbox (15.18042pt too wide) in paragraph at lines 24814--24814
 []\T1/pcr/m/n/9 ## long to wide (direction = "wide") requires idvar and timeva
r at a minimum[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 24815--24815
 []\T1/pcr/m/n/9 reshape(Indometh, direction = "wide", idvar = "Subject", timev
ar = "time")[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 24834--24834
 []\T1/pcr/m/n/9 reshape(df, timevar = "visit", idvar = "id", direction = "wide
", v.names = "x")[] 
[1701] [1702]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 24938--24938
 []       \T1/pcr/m/n/10 na.action = c("+Big_alternate", "-Big_alternate", "na.
omit", "fail"),[] 
Underfull \hbox (badness 1033) in paragraph at lines 24981--24987
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
[1703]
Underfull \hbox (badness 10000) in paragraph at lines 25002--25005
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/pcr/m/n/10 y = r
unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/pcr/m/n/10 y[j] =
[1704]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 25084--25084
 []\T1/pcr/m/n/9 plot(myNHT, type = "b", ylim = c(48, 60), main = "Running Medi
ans Example")[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 25113--25113
 []\T1/pcr/m/n/9 ## An example with initial NA\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s -
 used to fail badly (notably for "Turlach"):[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 25125--25125
 []\T1/pcr/m/n/9 matplot(y = cbind(x15, rT15), type = "b", ylim = c(1,9), pch=1
:5, xlab = NA,[] 
[1705] [1706] [1707] [1708] [1709] [1710]
Underfull \vbox (badness 10000) has occurred while \output is active [1711]
[1712]
Underfull \hbox (badness 6268) in paragraph at lines 25584--25589
[][][]\T1/pcr/m/n/10 SSasympOrig[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 S
Sbiexp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSfol[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 SSfpl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSgo
mpertz[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 SSlogis[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 SSmicmen[][][][]\T1/ptm/m/n/10 ,
[1713] [1714] [1715]
Underfull \hbox (badness 1867) in paragraph at lines 25794--25796
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 25810--25814
[]\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 NN <- [][]nobs[][][](object, use.fallba
ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 PP
Underfull \hbox (badness 10000) in paragraph at lines 25810--25814
\T1/pcr/m/n/10 <- sum(!is.na([][]coef[][][](object))) []\T1/ptm/m/n/10 -- where
 in older \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions this was
[1716]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 25852--25852
 []\T1/pcr/m/n/9 sigma(lm1) # ~= 7.165  = "Residual standard error"  printed fr
om summary(lm1)[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 25859--25859
 []\T1/pcr/m/n/9 stopifnot(all.equal(sigma(fm.DN1), summary(fm.DN1)$sigma, tole
rance=1e-15))[] 
[1717] [1718] [1719]
Underfull \hbox (badness 2495) in paragraph at lines 26042--26051
[]\T1/ptm/m/n/10 For an in-verse gaus-sian GLM the model as-sumed is $\OML/cmm/
m/it/10 IG\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 ^^V[]; ^^Uw[]\OT1/cmr/m/n/10 )$ \T1
/ptm/m/n/10 (see [][]$\T1/pcr/m/n/10 https : / / en .
[1720] [1721]
Underfull \hbox (badness 2197) in paragraph at lines 26184--26187
[]\T1/pcr/m/n/10 psmirnov []\T1/ptm/m/n/10 gives the dis-tri-bu-tion func-tion,
 []\T1/pcr/m/n/10 qsmirnov []\T1/ptm/m/n/10 gives the quan-tile func-tion, and
Overfull \hbox (24.78088pt too wide) in paragraph at lines 26204--26204
 []       \T1/pcr/m/n/10 twiceit = FALSE, endrule = c("Tukey", "copy"), do.ends
 = FALSE)[] 
Underfull \hbox (badness 1412) in paragraph at lines 26211--26213
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing the kind of smoother re-qui
red; de-faults to
[1722]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 26298--26298
 []\T1/pcr/m/n/9 matlines(cbind(smooth(x, "3R"), smooth(x, "S"), smooth(x, "3RS
S"), smooth(x)))[] 
[1723]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 26323--26323
 []\T1/pcr/m/n/10 smooth.spline(x, y = NULL, w = NULL, df, spar = NULL, lambda 
= NULL, cv = FALSE, 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 26326--26326
 []              \T1/pcr/m/n/10 control.spar = list(), tol = 1e-6 * IQR(x), kee
p.stuff = FALSE)[] 
[1724] [1725] [1726]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 26561--26561
 []    \T1/pcr/m/n/10 nx <- length(x) - sum(duplicated( round((x - mean(x)) / t
ol) ))[] 
Underfull \hbox (badness 2547) in paragraph at lines 26565--26571
[]\T1/ptm/m/n/10 The de-fault []\T1/pcr/m/n/10 all.knots = FALSE []\T1/ptm/m/n/
10 and []\T1/pcr/m/n/10 nknots = .nknots.smspl[]\T1/ptm/m/n/10 , en-tails us-in
g only
[1727]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 26612--26612
 []\T1/pcr/m/n/9 plot(dist ~ speed, data = cars, main = "data(cars)  &  smoothi
ng splines")[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 26633--26633
 []\T1/pcr/m/n/9 with(cars.spl$fit, min + range * knot[-c(1:3, nk+1 +1:3)]) # =
= unique(cars$speed)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1728]
[1729] [1730]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 26825--26825
 []\T1/pcr/m/n/10 spec.ar(x, n.freq, order = NULL, plot = TRUE, na.action = na.
fail, 
[1731] [1732] [1733] [1734] [1735] [1736]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 27205--27205
 []          \T1/pcr/m/n/10 method = c("fmm", "periodic", "natural", "monoH.FC"
, "hyman"),[] 
[1737] [1738]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 27386--27386
 []\T1/pcr/m/n/9 set.seed(8); x <- sort(round(rnorm(30), 1)); y <- round(sin(pi
 * x) + rnorm(30)/10, 3)[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 27392--27392
 []\T1/pcr/m/n/9 plot(x, y, main = "spline(x,y, ties=list(\"ordered\", mean))  
for when x has ties")[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1739]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 27401--27401
 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "monoH.FC")(x), add = TRUE, c
ol = 3, n = 1001)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 27402--27402
 []\T1/pcr/m/n/9 curve(splinefun(x., y., method = "hyman")   (x), add = TRUE, c
ol = 4, n = 1001)[] 
[1740]
Underfull \hbox (badness 2922) in paragraph at lines 27471--27476
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (9.78043pt too wide) in paragraph at lines 27508--27508
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5.2), xlim
 = c(-.3, 5),[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 27511--27511
 []                    \T1/pcr/m/n/9 {f[phi](x) == phi[1] + (phi[2]-phi[1])*~e^
{-e^{phi[3]}*~x}}))[] 
[1741]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 27520--27520
 []         \T1/pcr/m/n/9 c(0  ,  1   ), 1, length = 0.08, angle = 25); text(0.
5, 1, quote(1))[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 27521--27521
 []  \T1/pcr/m/n/9 y0 <- 1 + 4*exp(-3/4) ; t.5 <- log(2) / exp(-3/4) ; AR2 <- 3
 # (Asym + R0)/2[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 27525--27525
 []  \T1/pcr/m/n/9 axis(2, at = c(1,AR2,5), labels= expression(phi[2], frac(phi
[1]+phi[2],2), phi[1]),[] 
Underfull \hbox (badness 3240) in paragraph at lines 27579--27582
[][][]\T1/pcr/m/n/10 nls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 selfStart
[][][][]\T1/ptm/m/n/10 ; []\T1/pcr/m/n/10 example(SSasympOff) []\T1/ptm/m/n/10 
gives graph show-ing the []\T1/pcr/m/n/10 SSasympOff
[1742]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 27600--27600
 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOff(xx, Asym = 5, lrc = log(
0.4), c0 = 3/4)) )[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27603--27603
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(-.5,6), xlim
 = c(-1, 8),[] 
[1743]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27686--27686
 []  \T1/pcr/m/n/9 stopifnot( all.equal(yy, SSasympOrig(xx, Asym = 5, lrc = log
(log(2)))) )[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27690--27690
 []  \T1/pcr/m/n/9 plot(xx, yy, type = "l", axes = FALSE, ylim = c(0,5), xlim =
 c(-1/4, 5),[] 
Overfull \hbox (58.38037pt too wide) in paragraph at lines 27700--27700
 []  \T1/pcr/m/n/9 axis(2, at = 5*c(1/2,1), labels= expression(frac(phi[1],2), 
phi[1]), pos=0, las=1)[] 
[1744]
Overfull \hbox (106.98032pt too wide) in paragraph at lines 27705--27705
 []       \T1/pcr/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
Underfull \hbox (badness 2922) in paragraph at lines 27741--27747
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 27763--27763
 []\T1/pcr/m/n/9 print(getInitial(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), dat
a = Indo.1),[] 
[1745]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 27779--27779
 []  \T1/pcr/m/n/9 legend("topright", c("y1+y2", "y1 = 3.5 * exp(-4*x)", "y2 = 
1.5 * exp(-x)"),[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 27793--27793
 []\T1/pcr/m/n/9 ## Fails by default (scaleOffset=0) on most platforms {also af
ter increasing maxiter !}[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 27795--27795
 []        \T1/pcr/m/n/9 nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, trace=TRUE)[] 
Overfull \hbox (128.58029pt too wide) in paragraph at lines 27798--27798
 []\T1/pcr/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[] 
Overfull \hbox (123.1803pt too wide) in paragraph at lines 27800--27800
 []           \T1/pcr/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[] 
[1746] [1747]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 27912--27912
 []\T1/pcr/m/n/10 Dose * exp(lKe+lKa-lCl) * (exp(-exp(lKe)*input) - exp(-exp(lK
a)*input)) 
[1748]
Underfull \hbox (badness 2922) in paragraph at lines 27974--27979
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1749]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 28012--28012
 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "A", phi[2] == "B", phi[3] == "xm
id", phi[4] == "scal")))[] 
Underfull \hbox (badness 2922) in paragraph at lines 28061--28066
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1750]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28092--28092
 []\T1/pcr/m/n/9 lines(x, do.call(SSgompertz, c(list(x=x), coef(fm1))), col = "
red", lwd=2)[] 
Underfull \hbox (badness 2922) in paragraph at lines 28126--28131
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1751]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 28151--28151
 []\T1/pcr/m/n/9 ## Initial values are in fact the converged one here, "Number 
of iter...: 0" :[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 28155--28155
 []\T1/pcr/m/n/9 fm2 <- update(fm1, control=nls.control(tol = 1e-9, warnOnly=TR
UE), trace = TRUE)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28175--28175
 []  \T1/pcr/m/n/9 mtext(quote(list(phi[1] == "Asym", phi[2] == "xmid", phi[3] 
== "scal")))[] 
[1752]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 28185--28185
 []  \T1/pcr/m/n/9 segments(c(2,2.6,2.6), c(0,  2.5,3.5),   # NB.  SSlogis(x = 
xmid = 2) = 2.5[] 
Underfull \hbox (badness 2922) in paragraph at lines 28220--28225
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 inpu
t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28242--28242
 []\T1/pcr/m/n/9 print(getInitial(rate ~ SSmicmen(conc, Vm, K), data = PurTrt),
 digits = 3)[] 
[1753]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 28260--28260
 []       \T1/pcr/m/n/9 ann = FALSE, axes = FALSE, main = "Parameters in the SS
micmen model")[] 
[1754]
Underfull \hbox (badness 6493) in paragraph at lines 28312--28317
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28340--28340
 []\T1/pcr/m/n/9 getInitial(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 28343--28343
 []\T1/pcr/m/n/9 fm1 <- nls(weight ~ SSweibull(Time, Asym, Drop, lrc, pwr), dat
a = Chick.6)[] 
Overfull \hbox (47.58038pt too wide) in paragraph at lines 28346--28346
 []\T1/pcr/m/n/9 plot(weight ~ Time, Chick.6, xlim = c(0, 21), main = "SSweibul
l() fit to Chick.6")[] 
Overfull \hbox (69.18036pt too wide) in paragraph at lines 28349--28349
 []\T1/pcr/m/n/9 As <- coef(fm1)[["Asym"]]; abline(v = 0, h = c(As, As - coef(f
m1)[["Drop"]]), lty = 3)[] 
[1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765]
[1766] [1767] [1768]
Underfull \hbox (badness 3396) in paragraph at lines 29233--29235
[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.glm"[]\T1/ptm/m/
n/10 , usu-ally, a re-sult of a call to
[1769] [1770] [1771]
Underfull \hbox (badness 2237) in paragraph at lines 29412--29414
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1772] [1773]
Underfull \hbox (badness 2591) in paragraph at lines 29576--29578
[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.nls"[]\T1/ptm/m/
n/10 , usu-ally the re-sult of a call to
[1774]
Underfull \hbox (badness 2237) in paragraph at lines 29622--29625
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1
/pcr/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if
[1775]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 29695--29695
 []\T1/pcr/m/n/10 supsmu(x, y, wt =, span = "cv", periodic = FALSE, bass = 0, t
race = FALSE) 
[1776] [1777]
Underfull \hbox (badness 3407) in paragraph at lines 29804--29808
[]\T1/ptm/m/n/10 character vec-tor, one shorter than (the \T1/ptm/m/it/10 aug-m
ented\T1/ptm/m/n/10 , see []\T1/pcr/m/n/10 corr []\T1/ptm/m/n/10 be-low)
[1778]
Overfull \hbox (47.58038pt too wide) in paragraph at lines 29874--29874
 []\T1/pcr/m/n/9 symnum(ii, cutpoints =  2*(0:4), symbols = c(".", "-", "+", "$
"), show.max = TRUE)[] 
[1779]
Underfull \hbox (badness 1337) in paragraph at lines 29937--29941
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1780] [1781] [1782] [1783]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 30202--30202
 []\T1/pcr/m/n/9 persp(tt, ncp, ptn, zlim = 0:1, r = 2, phi = 20, theta = 200, 
main = t.tit,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 30230--30230
 []         \T1/pcr/m/n/10 use.factor.levels = TRUE, smooth = NULL, ylim = "com
mon",[] 
[1784]
Underfull \hbox (badness 1616) in paragraph at lines 30256--30259
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1785]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 30335--30335
 []\T1/pcr/m/n/9 termplot(model, partial.resid = TRUE, smooth = panel.smooth, s
pan.smth = 1/4)[] 
[1786]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 30413--30413
 []\T1/pcr/m/n/10 terms(x, specials = NULL, abb = NULL, data = NULL, neg.out = 
TRUE,[] 
[1787] [1788]
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[]\T1/ptm/m/n/10 If a []\T1/pcr/m/n/10 specials []\T1/ptm/m/n/10 ar-gu-ment was
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- nrow)[] 
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 toeplitz(x, *)[]\T1/ptm/m/n/10 : the firs
t col-umn of the Toeplitz ma-trix; for
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.) {also warning}:[] 
[1791]
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 []   \T1/pcr/m/n/9 colnames(W) <- paste0(",", if(n <= 9) 1:n else c(1:9, lette
rs[seq_len(n-9)]))[] 
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 []\T1/pcr/m/n/9 y.hat <- W. %*% y # y.hat := smoothed(y) ("mass preserving" ->
 longer than y)[] 
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 []\T1/pcr/m/n/9 plot(x,y, type="b", xlim=c(1,m)); curve(f(x), 1,n, col="gray",
 lty=2, add=TRUE)[] 
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else "ts",[] 
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[]\T1/pcr/m/n/10 is.mts(x) []\T1/ptm/m/n/10 tests if an ob-ject []\T1/pcr/m/n/1
0 x []\T1/ptm/m/n/10 is a mul-ti-vari-ate time se-ries, i.e., ful-fills []\T1/p
cr/m/n/10 is.ts(x)[]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/10 ptukey(q, nmeans, df, nranges = 1, lower.tail = TRUE, log.p =
 FALSE) 
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 []\T1/pcr/m/n/10 qtukey(p, nmeans, df, nranges = 1, lower.tail = TRUE, log.p =
 FALSE)[] 
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v = FALSE,[] 
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 = 0)[] 
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s: --------------[] 
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 []\T1/pcr/m/n/9 ## where as  \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 extendInt="yes"\TS1
/pcr/m/n/9 '  \T1/pcr/m/n/9 simply first enlarges the search interval:[] 
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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t compute exact p-value with ties[] 
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 []\T1/pcr/m/n/9 wilcox.test((4:2)/10, (3:1)/10, paired=TRUE, digits.rank = 9) 
# same ties as (4:2, 3:1)[] 
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 = getOption("ts.eps"), ...)[] 
[1823]
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ALSE, 
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 []\T1/pcr/m/n/9 ## The Female:Rejected combination has NA \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 Freq\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 (and NA prints \TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 invisibly\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 as "")[] 
[1826]) (./stats4-pkg.tex
Chapter 11.
[1827] [1828] [1829]
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, log = TRUE))[] 
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er to 0 and 1[] 
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(./tcltk-pkg.tex [1838]
Chapter 12.
[1839] [1840] [1841] [1842] [1843]
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 []\T1/pcr/m/n/9 ls(envir = .TkRoot$env, all.names = TRUE) # .Tcl.args put a ca
llback ref in here[] 
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[]\T1/pcr/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i
ng any Tk or Tcl com-mand by sim-ply run-ning
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 []\T1/pcr/m/n/9 eval.txt <- function() eval(str2lang(tclvalue(tkget(txt.w, "0.
0", "end"))))[] 
[1853] [1854] [1855] [1856] [1857]
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[][][]\T1/pcr/m/n/10 select.list[][][] []\T1/ptm/m/n/10 (a text ver-sion ex-cep
t on Win-dows and the ma-cOS GUI), [][][]\T1/pcr/m/n/10 menu[][][] []\T1/ptm/m/
n/10 (whose
[1858]) (./tools-pkg.tex
Chapter 13.
[1859]
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 []\T1/pcr/m/n/9 ## is used for simple print methods in R, and as prototype for
 new methods.[] 
[1860]
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[]\T1/pcr/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will
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[1862]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12
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\T1/ptm/m/n/10 types of bib-li-o-graphic en-try sup-ported by [][][]\T1/pcr/m/n
/10 bibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-
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\T1/ptm/m/n/10 tines de-scribed be-low. The for-mer must be named []\T1/pcr/m/n
/10 formatArticle[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 formatBook[]\T1/ptm/m/n/10
 ,
[1863]
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ngle = TRUE, 
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin
e to use. Over-rides any
[1864] [1865]
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\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
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xz"),[] 
[1873]
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 []\T1/pcr/m/n/9 bad <- is.na(res$ASCII) | res$ASCII | (res$size > 1e4 & res$co
mpress == "none")[] 
[1874] [1875]
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E, ...)[] 
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[1876]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
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pre-vi-ous
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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-
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[]\T1/pcr/m/n/10 check_packages_in_dir []\T1/ptm/m/n/10 re-turns an ob-ject in-
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[]\T1/pcr/m/n/10 codocClasses []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 codocData [
]\T1/ptm/m/n/10 re-turn ob-jects of class []\T1/pcr/m/n/10 "codocClasses" []\T1
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[]\T1/pcr/m/n/10 CRAN_package_db() []\T1/ptm/m/n/10 re-turns a data frame with 
char-ac-ter columns con-tain-ing most
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\T1/ptm/m/n/10 `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' meta-data for the cu
r-rent pack-ages in the CRAN pack-age repos-i-
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\T1/ptm/m/n/10 tory, in-clud-ing in par-tic-u-lar the De-scrip-tion and Main-ta
iner in-for-ma-tion not pro-vided by
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[]\T1/ptm/m/n/10 Internal func-tions []\T1/pcr/m/n/10 CRAN_aliases_db[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 CR
AN_current_db []\T1/ptm/m/n/10 and
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hances"))[] 
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[]\T1/pcr/m/n/10 c("Depends", "Imports", "LinkingTo", "Suggests",
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\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
0 "all" []\T1/ptm/m/n/10 is short-hand for that vec-tor,
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[1891]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 loadPkgRdMacros []\T1/ptm/m/n/10 func-tio
n first looks for an []\T1/pcr/m/n/10 "RdMacros" []\T1/ptm/m/n/10 en-try in the
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[]\T1/ptm/m/n/10 Package main-tain-ers can use these func-tions to em-ploy user
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0 R\T1/ptm/m/n/10 's mech-a-nisms (in par-tic-u-lar, cus-tom com-
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\T1/ptm/m/n/10 pi-la-tions in sub-di-rec-to-ries of `\T1/pcr/m/n/10 src\T1/ptm/
m/n/10 '), e.g., by adding con-fig-ure code call-ing \T1/phv/m/n/10 R \T1/ptm/m
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[]\T1/pcr/m/n/10 matchConcordance []\T1/ptm/m/n/10 con-verts from out-put lo-ca
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[]\T1/ptm/m/n/10 The de-fault method of []\T1/pcr/m/n/10 as.Rconcordance []\T1/
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\T1/ptm/m/n/10 trans-for-ma-tion records a con-cor-dance in the file which is r
ead as []\T1/pcr/m/n/10 prevConcordance[]\T1/ptm/m/n/10 .
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ong", 
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\T1/pcr/m/n/10 "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string []\T1/pcr/m/n/1
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion 3.2.0, User-d
efined macros may be given in a sep-a-rate file us-ing
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[]\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-
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[]\T1/ptm/m/n/10 By de-fault, the tags \T1/pcr/m/n/10 \S3method\T1/ptm/m/n/10 ,
 \T1/pcr/m/n/10 \S4method\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \command\T1/ptm/m/n/10
 , \T1/pcr/m/n/10 \docType\T1/ptm/m/n/10 , \T1/pcr/m/n/10 \email\T1/ptm/m/n/10 
,
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net"))[] 
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1919]
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[]\T1/pcr/m/n/10 testInstalledBasic []\T1/ptm/m/n/10 runs the ba-sic tests, if 
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[]\T1/ptm/m/n/10 Where sup-ported ([]\T1/pcr/m/n/10 texi2dvi []\T1/ptm/m/n/10 5
.0 and later; []\T1/pcr/m/n/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op-ti
on
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sgmerge []\T1/ptm/m/n/10 in ad-di-tion to
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ht[]\T1/ptm/m/n/10 ' and
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[]\T1/ptm/m/n/10 All ex-ist-ing files in di-rec-tory []\T1/pcr/m/n/10 po []\T1/
ptm/m/n/10 with names `\T1/pcr/m/n/10 R-\T1/ptm/m/sl/10 lang\T1/pcr/m/n/10 .po\
T1/ptm/m/n/10 ' are up-dated from
Underfull \hbox (badness 1184) in paragraph at lines 4650--4656
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/pcr/m/n/10 po
/\T1/ptm/m/sl/10 pkgname\T1/pcr/m/n/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. T
he
Underfull \hbox (badness 2941) in paragraph at lines 4650--4656
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in t
he pack-age are ex-am-ined to cre-ate a file
[1928] [1929] [1930]
Underfull \hbox (badness 10000) in paragraph at lines 4876--4878
[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 vignetteEngine[][][][]\T1/ptm/m/n/10 
, such as []\T1/pcr/m/n/10 "utils::Sweave" []\T1/ptm/m/n/10 or
[1931]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4905--4905
 []               \T1/pcr/m/n/10 verbose = FALSE, unpacked = FALSE, subdirs = F
ALSE,[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 4906--4906
 []               \T1/pcr/m/n/10 latestOnly = TRUE, addFiles = FALSE, rds_compr
ess = "xz",[] 
Underfull \hbox (badness 3240) in paragraph at lines 4919--4922
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/10 ',
Underfull \hbox (badness 1742) in paragraph at lines 4923--4933
[]\T1/pcr/m/n/10 "Package"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Version"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Priority"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Depe
nds"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Imports"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1127) in paragraph at lines 4961--4967
[]\T1/pcr/m/n/10 write_PACKAGES []\T1/ptm/m/n/10 scans the named di-rec-tory fo
r R pack-ages, ex-tracts in-for-ma-tion from
Underfull \hbox (badness 1635) in paragraph at lines 4961--4967
\T1/ptm/m/n/10 each pack-age's `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file
, and writes this in-for-ma-tion into the `\T1/pcr/m/n/10 PACKAGES\T1/ptm/m/n/1
0 ',
[1932]
Underfull \hbox (badness 1571) in paragraph at lines 4989--4993
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
Underfull \hbox (badness 2772) in paragraph at lines 5015--5020
\T1/ptm/m/n/10 and `\T1/pcr/m/n/10 PACKAGES.gz\T1/ptm/m/n/10 ' files. See [][][
]\T1/pcr/m/n/10 update_PACKAGES[][][] []\T1/ptm/m/n/10 for ef-fi-ciently up-dat
-ing ex-ist-ing
[1933] [1934]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5157--5157
 []\T1/pcr/m/n/9 xgettext(tmpPkg, asCall=TRUE )[[1]] # default; shows  \TS1/pcr
/m/n/9 ' \T1/pcr/m/n/9 sqrt(as.complex(x)) \TS1/pcr/m/n/9 '[] 
[1935]) (./utils-pkg.tex [1936]
Chapter 14.
Underfull \hbox (badness 1072) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[]
\T1/pcr/m/n/10 insertions[]\T1/ptm/m/n/10 ',
[1937] [1938] [1939] [1940]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 261--261
 []\T1/pcr/m/n/9 find("cor", numeric = TRUE)                     # numbers with
 these names[] 
[1941] [1942]
Underfull \hbox (badness 10000) in paragraph at lines 381--386
\T1/ptm/m/n/10 are []\T1/pcr/m/n/10 c("vertical", "horizontal", "cascade", "min
imize",
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 list[][][] []\T1/ptm/m/n/10 of win-dow 
han-dles, by de-fault pro-duced by
[1943]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 453--453
 []\T1/pcr/m/n/9 # This default is useful only in SDI mode:  it will tile any F
irefox window[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 455--455
 []\T1/pcr/m/n/9 .arrangeWindowsDefaults <- list(c("R", "all"), pattern = c("",
 "Firefox"))[] 
Overfull \hbox (60.78088pt too wide) in paragraph at lines 472--472
 []         \T1/pcr/m/n/10 prompts = getOption("askYesNo", gettext(c("Yes", "No
", "Cancel"))),[] 
[1944] [1945] [1946]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 686--686
 []\T1/pcr/m/n/10 aspell_package_Rd_files(dir, drop = c("\\author", "\\referenc
es"), 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 692--692
 []\T1/pcr/m/n/10 aspell_package_R_files(dir, ignore = character(), control = l
ist(),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 693--693
 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 694--694
 []\T1/pcr/m/n/10 aspell_package_C_files(dir, ignore = character(), control = l
ist(),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 695--695
 []                       \T1/pcr/m/n/10 program = NULL, dictionaries = charact
er())[] 
[1947]
Underfull \hbox (badness 10000) in paragraph at lines 729--735
[]\T1/ptm/m/n/10 Functions []\T1/pcr/m/n/10 aspell_package_Rd_files[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 aspell_package_vignettes[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 4416) in paragraph at lines 729--735
[]\T1/pcr/m/n/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 a
spell_package_C_files []\T1/ptm/m/n/10 per-form spell check-
[1948] [1949] [1950] [1951]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 1053--1053
 []\T1/pcr/m/n/10 bibentry(bibtype, textVersion = NULL, header = NULL, footer =
 NULL, 
[1952]
Underfull \hbox (badness 7649) in paragraph at lines 1127--1133
[][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 in-di-cat-ing if Bib-TeX co
de should be given ad-di-tion-ally;
Underfull \hbox (badness 5533) in paragraph at lines 1127--1133
\T1/ptm/m/n/10 cur-rently ap-plies only to []\T1/pcr/m/n/10 style = "citation"[
]\T1/ptm/m/n/10 . The de-fault for
Underfull \hbox (badness 4739) in paragraph at lines 1127--1133
\T1/ptm/m/n/10 the []\T1/pcr/m/n/10 print() []\T1/ptm/m/n/10 method de-pends on
 the num-ber of (bib) en-tries and
Underfull \hbox (badness 1817) in paragraph at lines 1127--1133
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
Underfull \hbox (badness 10000) in paragraph at lines 1136--1138
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1953] [1954]
Underfull \hbox (badness 10000) in paragraph at lines 1255--1258
[]\T1/ptm/m/n/10 The DOI ([][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org 
/ wiki / Digital _ Object _
[1955]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 1338--1338
 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active [1956]
[1957] [1958] [1959] [1960] [1961]
Underfull \hbox (badness 1859) in paragraph at lines 1747--1756
[]\T1/ptm/m/n/10 For ex-am-ple, sup-pose that on a data set which you know to b
e quite large the com-
Underfull \hbox (badness 2042) in paragraph at lines 1747--1756
\T1/ptm/m/n/10 mand []\T1/pcr/m/n/10 data.frame(x, y, z, monday, tuesday) []\T1
/ptm/m/n/10 never re-turns. Do not re-port that
[1962] [1963]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1852--1852
 []                                     \T1/pcr/m/n/9 data = infert, family = b
inomial())))[] 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 1887--1887
 []\T1/pcr/m/n/10 changedFiles(before, after, path = before$path, timestamp = b
efore$timestamp,[] 
[1964] [1965]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 2033--2033
 []\T1/pcr/m/n/9 snapshot <- fileSnapshot(dir, timestamp = tempfile("timestamp"
), md5sum=TRUE)[] 
[1966]
Underfull \hbox (badness 2277) in paragraph at lines 2102--2107
[]\T1/pcr/m/n/10 charClass []\T1/ptm/m/n/10 was added in \T1/phv/m/n/10 R \T1/p
tm/m/n/10 4.1.0. A less di-rect way to ex-am-ine char-ac-ter classes
[1967]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 2134--2134
 []\T1/pcr/m/n/9 cl <- c("alnum", "alpha", "blank", "digit", "graph", "punct", 
"upper", "xdigit")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2136--2136
 []\T1/pcr/m/n/9 X <- as.data.frame(X); row.names(X) <- sQuote(intToUtf8(x, mul
tiple = TRUE))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 2144--2144
 []\T1/pcr/m/n/9 ## How many printable characters are there? (Around 280,000 in
 Unicode 13.)[] 
[1968] [1969]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2292--2292
 []\T1/pcr/m/n/10 chooseBioCmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1970]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2344--2344
 []\T1/pcr/m/n/10 chooseCRANmirror(graphics = getOption("menu.graphics"), ind =
 NULL, 
[1971]
Underfull \hbox (badness 1117) in paragraph at lines 2459--2466
[]\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/pcr/m/n/10 citation() []\T1/
ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print
Underfull \hbox (badness 1400) in paragraph at lines 2459--2466
\T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I
f a pack-age has more
[1972] [1973]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2542--2542
 []\T1/pcr/m/n/10 citeNatbib(keys, bib, textual = FALSE, before = NULL, after =
 NULL,[] 
[1974]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2662--2662
 []     \T1/pcr/m/n/9 author = as.person("Anthony C. Davison [aut], David V. Hi
nkley [aut]"),[] 
[1975]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 2702--2702
 []\T1/pcr/m/n/10 citEntry(entry, textVersion = NULL, header = NULL, footer = N
ULL, ...) 
Underfull \hbox (badness 1082) in paragraph at lines 2731--2735
[][][]\T1/pcr/m/n/10 citation[][][] []\T1/ptm/m/n/10 for more in-for-ma-tion ab
out cit-ing R and R pack-ages and `\T1/pcr/m/n/10 CITATION\T1/ptm/m/n/10 ' file
s;
[1976]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cli
pboard}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2736 ... the Clipboard in MS Windows}{clipboard}
                                                  
Underfull \hbox (badness 1163) in paragraph at lines 2767--2769
[]\T1/ptm/m/n/10 The Win-dows clip-board of-fers data in a num-ber of for-mats:
 see e.g. [][]$\T1/pcr/m/n/10 https : / / docs .
Overfull \vbox (1.12102pt too high) has occurred while \output is active
[1977] [1978]
Underfull \hbox (badness 10000) in paragraph at lines 2860--2862
[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[1979] [1980] [1981]
Underfull \hbox (badness 10000) in paragraph at lines 3078--3080
[]\T1/ptm/m/n/10 character string, in-di-cat-ing which type of pack-ages: see
[1982] [1983] [1984] [1985]
Underfull \hbox (badness 1762) in paragraph at lines 3371--3374
[]\T1/ptm/m/n/10 To just look in the `\T1/pcr/m/n/10 data\T1/ptm/m/n/10 ' di-re
c-tory of the cur-rent work-ing di-rec-tory, set []\T1/pcr/m/n/10 package =
[1986]
Overfull \hbox (63.78036pt too wide) in paragraph at lines 3463--3463
 []\T1/pcr/m/n/9 try(data(package = "rpart"), silent = TRUE) # list the data se
ts in the rpart package[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 3464--3464
 []\T1/pcr/m/n/9 data(USArrests, "VADeaths")    # load the data sets \TS1/pcr/m
/n/9 '\T1/pcr/m/n/9 USArrests\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and \TS1/pcr/m/n/9 
'\T1/pcr/m/n/9 VADeaths\TS1/pcr/m/n/9 '[] 
[1987]
Underfull \hbox (badness 2452) in paragraph at lines 3538--3541
[]\T1/ptm/m/n/10 The data en-try win-dow re-sponds to X re-sources of class []\
T1/pcr/m/n/10 R_dataentry[]\T1/ptm/m/n/10 . Re-sources
[1988] [1989] [1990] [1991] [1992] [1993]
Overfull \hbox (74.58035pt too wide) in paragraph at lines 3967--3967
 []  \T1/pcr/m/n/9 DLL.version(file.path(R.home(), "library/stats/libs", .Platf
orm$r_arch, "stats.dll"))[] 
[1994]
Underfull \hbox (badness 4779) in paragraph at lines 4046--4051
[]\T1/ptm/m/n/10 Support for method []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10
 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use
[1995]
Underfull \hbox (badness 1072) in paragraph at lines 4109--4113
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the []\T1/pcr/m/n/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the
[1996]
Underfull \hbox (badness 7238) in paragraph at lines 4165--4170
[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 "libcurl" []\T1/ptm/m/n/10 and []\T1/
pcr/m/n/10 "curl" []\T1/ptm/m/n/10 meth-ods, prox-ies can be set \T1/ptm/m/it/1
0 via \T1/ptm/m/n/10 the en-vi-ron-
Underfull \hbox (badness 1337) in paragraph at lines 4165--4170
\T1/ptm/m/n/10 ment vari-ables []\T1/pcr/m/n/10 http_proxy []\T1/ptm/m/n/10 or 
[]\T1/pcr/m/n/10 ftp_proxy[]\T1/ptm/m/n/10 . See [][]$\T1/pcr/m/n/10 https : / 
/ curl . se / libcurl / c /
Underfull \hbox (badness 1184) in paragraph at lines 4180--4196
\T1/ptm/m/n/10 string con-tain-ing `[]\T1/pcr/m/n/10 "Schannel"[]\T1/ptm/m/n/10
 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-
[1997] [1998]
Underfull \hbox (badness 4660) in paragraph at lines 4306--4309
\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
Underfull \hbox (badness 10000) in paragraph at lines 4330--4332
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/pcr/m/n/10 do
wnload.file[][][] []\T1/ptm/m/n/10 and
[1999] [2000] [2001]
Underfull \hbox (badness 1565) in paragraph at lines 4517--4521
[]\T1/ptm/m/n/10 Data frame columns are co-erced on in-put to \T1/ptm/m/it/10 c
har-ac-ter \T1/ptm/m/n/10 un-less nu-meric (in the sense of
[2002]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4600--4600
 []        \T1/pcr/m/n/10 character.only = FALSE, give.lines = FALSE, local = F
ALSE,[] 
[2003]
Underfull \hbox (badness 1910) in paragraph at lines 4634--4641
\T1/ptm/m/n/10 is saved, then ini-tial-ized to a spec-i-fied state, the ex-am-p
le is run and
Underfull \hbox (badness 1655) in paragraph at lines 4634--4641
\T1/ptm/m/n/10 the (saved) state is re-stored. []\T1/pcr/m/n/10 setRNG = TRUE [
]\T1/ptm/m/n/10 sets the same state as
Underfull \hbox (badness 2846) in paragraph at lines 4634--4641
[]\T1/pcr/m/n/10 R CMD [][]check[][][] []\T1/ptm/m/n/10 does for run-ning a pac
k-age's ex-am-ples. This is cur-
Underfull \hbox (badness 3460) in paragraph at lines 4634--4641
\T1/ptm/m/n/10 rently equiv-a-lent to []\T1/pcr/m/n/10 setRNG = {RNGkind("defau
lt", "default",
Underfull \hbox (badness 1931) in paragraph at lines 4641--4648
[]\T1/ptm/m/n/10 logical (or []\T1/pcr/m/n/10 "default"[]\T1/ptm/m/n/10 ) in-di
-cat-ing if [][][]\T1/pcr/m/n/10 devAskNewPage[][][](ask = TRUE)
[2004] [2005] [2006]
Underfull \hbox (badness 5939) in paragraph at lines 4887--4889
[]\T1/ptm/m/n/10 An en-try in []\T1/pcr/m/n/10 getOption("repos") []\T1/ptm/m/n
/10 named `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' which is not the de-fault
[2007] [2008]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5030--5030
 []\T1/pcr/m/n/9 # Set a breakpoint in both copies of that function, assuming o
ne is in the[] 
[2009] [2010]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.format}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.5101 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.5101 ...mat Unordered and Ordered Lists}{format}
                                                   [2011] [2012] [2013]
[2014] [2015] [2016] [2017] [2018]
Underfull \hbox (badness 1622) in paragraph at lines 5624--5628
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[2019] [2020] [2021] [2022] [2023]
Underfull \hbox (badness 1448) in paragraph at lines 6003--6008
[]\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject
s, cor-re-spond-ing to call-ing
[2024] [2025]
Overfull \hbox (96.78088pt too wide) in paragraph at lines 6153--6153
 []\T1/pcr/m/n/10 ## NB: The methods for \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 data.f
rame\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 and \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 array\
TS1/pcr/m/n/10 '  \T1/pcr/m/n/10 are identical to the \TS1/pcr/m/n/10 '\T1/pcr/
m/n/10 matrix\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 one[] 
[2026]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 6165--6165
 []\T1/pcr/m/n/10 tail(x, n = 6L, keepnums = TRUE, addrownums, ...) # exported 
as tail.matrix()[] 
[2027] [2028]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6299--6299
 []    \T1/pcr/m/n/9 ## BUT if I use "useAttrib(.)", this is *not* ok, when n i
s of length 2:[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 6300--6300
 []    \T1/pcr/m/n/9 ## --- because [i,j]-indexing of data frames *also* drops 
"other" attributes ..[] 
[2029] [2030]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6510--6510
 [] \T1/pcr/m/n/9 ## -> nicely formatted pdf -- including math formula -- for h
elp(dgamma):[] 
[2031]
Underfull \hbox (badness 10000) in paragraph at lines 6594--6596
[]\T1/ptm/m/n/10 The post-ing guide ([][]$\T1/pcr/m/n/10 https : / / www . r-[]
project . org / posting-[]guide . html$[][]\T1/ptm/m/n/10 ), also
[2032]
Underfull \hbox (badness 1502) in paragraph at lines 6643--6648
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
Underfull \hbox (badness 2103) in paragraph at lines 6643--6648
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[2033] [2034] [2035]
Underfull \hbox (badness 10000) in paragraph at lines 6816--6825
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
Underfull \hbox (badness 10000) in paragraph at lines 6816--6825
\T1/ptm/m/n/10 `\T1/pcr/m/n/10 R.home("docs")/html/packages.html\T1/ptm/m/n/10 
', which can be re-made by
[2036]
Underfull \hbox (badness 2150) in paragraph at lines 6880--6883
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
Underfull \hbox (badness 5175) in paragraph at lines 6896--6899
[]\T1/pcr/m/n/10 hsearch_db() []\T1/ptm/m/n/10 builds and caches the help searc
h database for sub-se-quent use by
[2037] [2038]
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
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[]\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 means to use []\T1/pcr/m/n/10 c("Depends
", "Imports", "LinkingTo",
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\T1/pcr/m/n/10 "Suggests") []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pkgs []\T1/ptm
/m/n/10 and []\T1/pcr/m/n/10 c("Depends", "Imports",
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\T1/pcr/m/n/10 "LinkingTo") []\T1/ptm/m/n/10 for added de-pen-den-cies: this in
-stalls all the pack-ages
[2041]
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\T1/ptm/m/n/10 for the `[]\T1/pcr/m/n/10 --configure-args[]\T1/ptm/m/n/10 ' fla
g in the call to []\T1/pcr/m/n/10 R CMD INSTALL[]\T1/ptm/m/n/10 . If
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed to
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[]\T1/pcr/m/n/10 R CMD INSTALL []\T1/ptm/m/n/10 for a source pack-age in-stall.
 E.g., []\T1/pcr/m/n/10 c("--html",
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[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[2042]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/pcr/m/n
/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail-
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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages
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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
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[]\T1/ptm/m/n/10 Using pack-ages with []\T1/pcr/m/n/10 type = "source" []\T1/pt
m/m/n/10 al-ways works pro-vided the pack-age con-tains no
[2043]
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[]\T1/pcr/m/n/10 install.packages []\T1/ptm/m/n/10 needs to be able to com-pute
 all the de-pen-den-cies of []\T1/pcr/m/n/10 pkgs []\T1/ptm/m/n/10 from
[2044]
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[][][]\T1/pcr/m/n/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pac
kages[][][][]\T1/ptm/m/n/10 ,
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 []  \T1/pcr/m/n/9 configure.args = c(RNetCDF = "--with-netcdf-include=/usr/inc
lude/udunits2"))[] 
[2045]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each
 pack-age's
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[]\T1/pcr/m/n/10 installed.packages []\T1/ptm/m/n/10 scans the `\T1/pcr/m/n/10 
DESCRIPTION\T1/ptm/m/n/10 ' files of each pack-age found along
[2046]
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 []\T1/pcr/m/n/9 plic <- installed.packages(.Library, priority = "high", fields
 = "License")[] 
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 []\T1/pcr/m/n/9 ## Keep packages that come with R (priority="high") and all ot
hers separate![] 
[2047] [2048]
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[]\T1/ptm/m/n/10 The ac-tual link-ing com-mand is con-structed by the ver-sion 
of []\T1/pcr/m/n/10 libtool []\T1/ptm/m/n/10 in-stalled at
[2049] [2050] [2051]
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 []\T1/pcr/m/n/9 ls.str(mode = "list")   #- what are the structured objects I h
ave defined?[] 
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 []\T1/pcr/m/n/10 make.socket(host = "localhost", port, fail = TRUE, server = F
ALSE) 
[2054]
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[]\T1/ptm/m/n/10 Compiling in sup-port for sock-ets was op-tional prior to \T1/
phv/m/n/10 R \T1/ptm/m/n/10 3.3.0: see
[2055]
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[]\T1/ptm/m/n/10 a sym-bol or char-ac-ter string nam-ing a class: only used if
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[]\T1/ptm/m/n/10 typically the re-sult of []\T1/pcr/m/n/10 methods(..)[]\T1/ptm
/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
[2056] [2057] [2058] [2059]
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[]\T1/ptm/m/n/10 logical spec-i-fy-ing that the news should be opened in the br
owser (by
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\T1/ptm/m/n/10 ac-cord-ing to ver-sion us-ing \T1/pcr/m/n/10 section \T1/ptm/m/
n/10 el-e-ments with names start-ing with a suit-able pre-fix
[2060]
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[]\T1/ptm/m/n/10 A data frame in-her-it-ing from class []\T1/pcr/m/n/10 "news_d
b"[]\T1/ptm/m/n/10 , with [][][]\T1/pcr/m/n/10 attributes[][][] "package" []\T1
/ptm/m/n/10 (and
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 []\T1/pcr/m/n/9 db4 <- news(Version == "4.0.0" & grepl("^BUG", Category) & gre
pl("PR#", Text),[] 
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 []\T1/pcr/m/n/9 ## News from a date range (\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 Matri
x\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 is there in a regular R installation):[] 
[2061]
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 []\T1/pcr/m/n/9 ## Which categories have been in use? % R-core maybe should st
andardize a bit more[] 
[2062]
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[]\T1/pcr/m/n/10 "B"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "KiB"[]\T1/ptm/m/n/10 ,
 []\T1/pcr/m/n/10 "MiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "GiB"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "TiB"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "PiB"[]\T1/ptm/m/
n/10 ,
[2063]
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 []            \T1/pcr/m/n/10 date.fields = c("Date", "Packaged", "Date/Publica
tion", "Built"),[] 
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 []            \T1/pcr/m/n/10 tryFormats = c("%Y-%m-%d", "%Y/%m/%d", "%D", "%m/
%d/%y"),[] 
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 []            \T1/pcr/m/n/10 desc = packageDescription(pkg, lib.loc=lib.loc, f
ields=date.fields))[] 
[2067]
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[]\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 asDateBuilt()[]\T1/ptm/m/n/10 , a [][][]\
T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string as from
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[]\T1/pcr/m/n/10 packageVersion() []\T1/ptm/m/n/10 is a con-ve-nience short-cut
, al-low-ing things like []\T1/pcr/m/n/10 if
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[]\T1/ptm/m/n/10 If a `\T1/pcr/m/n/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the 
given pack-age is found and can suc-cess-fully be read,
[2068]
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 []          \T1/pcr/m/n/9 identical(pu, packageDate("stats"))) # as "utils" an
d "stats" are[] 
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 []                                   \T1/pcr/m/n/9 # both \TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 base R\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and "Built" at same time[] 
[2069] [2070]
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("ok", "upgrade",
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[]\T1/ptm/m/n/10 plus []\T1/pcr/m/n/10 "Status"[]\T1/ptm/m/n/10 , a fac-tor wit
h lev-els []\T1/pcr/m/n/10 c("installed", "not
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 []       \T1/pcr/m/n/10 include = c("given", "family", "email", "role", "comme
nt"),[] 
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 []       \T1/pcr/m/n/10 braces = list(given = "", family = "", email = c("<", 
">"),[] 
[2072] [2073] [2074]
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 []         \T1/pcr/m/n/9 "S original, <http://statwww.epfl.ch/davison/BMA/libr
ary.html>"),[] 
[2075] [2076]
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[2088]
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 []         \T1/pcr/m/n/10 dec = ".", numerals = c("allow.loss", "warn.loss", "
no.loss"),[] 
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 []\T1/pcr/m/n/9 dd <- read.DIF(file.path(udir, "exDIF.dif"), header = TRUE, tr
anspose = TRUE)[] 
[2091] [2092] [2093]
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 []\T1/pcr/m/n/9 read.fwf(ff, widths = list(c(1,0, 2,3), c(2,2,2))) #> 1 NA 23 
456 98 76 54[] 
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 "no.loss"),[] 
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 []           \T1/pcr/m/n/10 row.names, col.names, as.is = !stringsAsFactors, t
ryLogical = TRUE,[] 
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 []           \T1/pcr/m/n/10 skip = 0, check.names = TRUE, fill = !blank.lines.
skip,[] 
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 []           \T1/pcr/m/n/10 fileEncoding = "", encoding = "unknown", text, ski
pNul = FALSE)[] 
[2095]
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[]\T1/ptm/m/n/10 Using []\T1/pcr/m/n/10 row.names = NULL []\T1/ptm/m/n/10 force
s row num-ber-ing. Miss-ing or []\T1/pcr/m/n/10 NULL
[2096]
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[]\T1/ptm/m/n/10 a [][][]\T1/pcr/m/n/10 logical[][][] []\T1/ptm/m/n/10 de-ter-m
in-ing if columns con-sist-ing en-tirely of []\T1/pcr/m/n/10 "F"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "FALSE"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "TRUE" []\T1/pt
m/m/n/10 should be con-verted to [][][]\T1/pcr/m/n/10 logical[][][][]\T1/ptm/m/
n/10 ; passed to
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 []\T1/pcr/m/n/10 readRegistry(key, hive = c("HLM", "HCR", "HCU", "HU", "HCC", 
"HPD"), 
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 []             \T1/pcr/m/n/10 maxdepth = 1, view = c("default", "32-bit", "64-
bit"))[] 
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[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are
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\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/
pcr/m/n/10 HKEY_CLASSES_ROOT[]\T1/ptm/m/n/10 .
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[]\T1/pcr/m/n/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_USER
S[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 HKEY_CURRENT_CONFIG
[2100] [2101] [2102] [2103]
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 []        \T1/pcr/m/n/10 ipar <- list(mean = c(0, 1), vcov = c bind(c(1, 1), c
(1, 0))) 
[2104] [2105] [2106] [2107]
Underfull \hbox (badness 10000) in paragraph at lines 11787--11791
\T1/pcr/m/n/10 en . wikipedia . org / w / index . php ? title = Roman _ numeral
s & oldid = 78252134$[][]\T1/ptm/m/n/10 .
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 []\T1/pcr/m/n/9 as.roman(c(NA, 1:3, "", strrep("I", 1:6))) # + NA with a warni
ng for "IIIIII"[] 
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 []\T1/pcr/m/n/9 ## simple consistency checks -- arithmetic when result is in  
{1,2,..,3899} :[] 
[2108] [2109]
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 []\T1/pcr/m/n/10 4. |     \-base:::tryCatchOne(expr, names, parentenv, handler
s[[1L]])[] 
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 []\T1/pcr/m/n/10 5. |       \-base:::doTryCatch(return(expr), name, parentenv,
 handler)[] 
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 []\T1/pcr/m/n/10 Rprofmem(filename = "Rprofmem.out", append = FALSE, threshold
 = 0) 
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[]\T1/ptm/m/n/10 If `[]\T1/pcr/m/n/10 --default-packages[]\T1/ptm/m/n/10 ' is n
ot used, then []\T1/pcr/m/n/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron-me
nt vari-
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\T1/ptm/m/n/10 able []\T1/pcr/m/n/10 R_SCRIPT_DEFAULT_PACKAGES[]\T1/ptm/m/n/10 
. If this is set, then it takes prece-dence over
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 []\T1/pcr/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 sessionInfo()\TS1/pcr/m/n/9 '[] 
[2114] [2115]
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 []            \T1/pcr/m/n/10 restrict = c("functions", "descriptions", "news",
 "Rfunctions",[] 
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 []                         \T1/pcr/m/n/10 "Rmanuals", "READMEs", "views", "vig
nettes"),[] 
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 []            \T1/pcr/m/n/10 sortby = c("score", "date:late", "date:early", "s
ubject",[] 
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 []                       \T1/pcr/m/n/10 "subject:descending", "size", "size:de
scending"),[] 
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\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 score[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 date:
late []\T1/ptm/m/n/10 for sort-ing by date with lat-est re-sults first,
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\T1/ptm/m/n/10 der, []\T1/pcr/m/n/10 subject:descending []\T1/ptm/m/n/10 for re
-verse al-pha-bet-i-cal or-der, []\T1/pcr/m/n/10 size []\T1/ptm/m/n/10 or
[2116]
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 []\T1/pcr/m/n/9 fullquery <- RSiteSearch("lattice", restrict = c("vignettes","
Rfunctions"))[] 
[2117]
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[]\T1/ptm/m/n/10 Character string spec-i-fy-ing whether emacs style ([]\T1/pcr/
m/n/10 "etags"[]\T1/ptm/m/n/10 ) or vi style
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / www . gnu . org / software /
[2118]
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 []             \T1/pcr/m/n/10 split = FALSE, quiet = FALSE, drop.evalFALSE = F
ALSE, ...)[] 
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[]\T1/ptm/m/n/10 The de-fault for []\T1/pcr/m/n/10 stylepath []\T1/ptm/m/n/10 i
s now taken from the en-vi-ron-ment vari-able
[2121]
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 The use of fancy quotes (see [][][]\T1/pcr/m/n/10 sQuote[][][]
[]\T1/ptm/m/n/10 ) can cause prob-lems when set-ting \T1/phv/m/n/10 R \T1/ptm/m
/n/10 out-put in
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rent")[] 
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
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[]\T1/ptm/m/n/10 The file `\T1/pcr/m/n/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ures
 the R GUI ([]\T1/pcr/m/n/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows
 and
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[]\T1/ptm/m/n/10 At the time of writ-ing `\T1/pcr/m/n/10 Rdevga\T1/ptm/m/n/10 '
 con-fig-ured the map-ping of font num-bers to fonts, and
[2125] [2126] [2127] [2128] [2129]
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the plat-form \T1/phv/m/n/10
 R \T1/ptm/m/n/10 was built un-der. Where
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
g
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[]\T1/ptm/m/n/10 (not al-ways present): a named list of the re-sults of call-in
g
[2130]
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 []\T1/pcr/m/n/9 toLatex(sI, locale = FALSE) # shortest; possibly desirable at 
end of report[] 
[2131]
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[]\T1/ptm/m/n/10 Repository `[]\T1/pcr/m/n/10 CRAN[]\T1/ptm/m/n/10 ' is treated
 spe-cially: the value is taken from the cur-rent set-ting of
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 []\T1/pcr/m/n/10 setWindowTitle(suffix, title = paste(getIdentification(), suf
fix)) 
[2132] [2133] [2134]
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[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2135]
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[]\T1/pcr/m/n/10 getSrcFilename []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 getSrcDir
ectory []\T1/ptm/m/n/10 re-turn char-ac-ter vec-tors hold-ing the file-
[2136] [2137] [2138]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 13925--13925
 []                       \T1/pcr/m/n/10 format(x, trim = TRUE, drop0trailing =
 TRUE, ...))[] 
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[]\T1/ptm/m/n/10 logical; if []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault),
 [][][]\T1/pcr/m/n/10 deparse[][][](control = <S>) []\T1/ptm/m/n/10 will not ha
ve
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[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
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[][][]\T1/pcr/m/n/10 options[][][]("width")[]\T1/ptm/m/n/10 ; note that this ha
s only a weak ef-fect, un-less
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[]\T1/ptm/m/n/10 (see [][][]\T1/pcr/m/n/10 options[][][][]\T1/ptm/m/n/10 ) whic
h de-faults to []\T1/pcr/m/n/10 "no" []\T1/ptm/m/n/10 for back com-pat-i-bil-it
y rea-sons;
[2139]
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[]\T1/ptm/m/n/10 numeric or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 as by de-fau
lt, de-ter-min-ing the []\T1/pcr/m/n/10 nlines []\T1/ptm/m/n/10 ar-gu-ment to
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 []\T1/pcr/m/n/9 str(.Machine, digits.d = 20) # extra digits for identification
 of binary numbers[] 
[2140]
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 []\T1/pcr/m/n/9 ## Truncation behavior (<-> correct width measurement) for "lo
ng" non-ASCII:[] 
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 []\T1/pcr/m/n/9 ## nchar.max: 1st line needs an increase of  2  in order to se
e  1  (in UTF-8!):[] 
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 []\T1/pcr/m/n/9 invisible(lapply(60:66, function(N) str( ch , nchar.max = N)))
 # "1 is 1" here[] 
[2141] [2142] [2143]
Underfull \hbox (badness 10000) in paragraph at lines 14233--14235
[]\T1/ptm/m/n/10 Options other than []\T1/pcr/m/n/10 memory = "none" []\T1/ptm/
m/n/10 ap-ply only to files pro-duced by
[2144]
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[]\T1/ptm/m/n/10 further ar-gu-ments passed to the driver's setup func-tion. Se
e
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[][][]\T1/pcr/m/n/10 RweaveLatexSetup[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/
m/n/10 RtangleSetup[][][][]\T1/ptm/m/n/10 , re-spec-tively, for the ar-gu-
[2145]
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[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fau
lt) then the avail-able syn-tax ob-jects are con-sulted in
Underfull \hbox (badness 6252) in paragraph at lines 14391--14398
\T1/ptm/m/n/10 turn, and se-lected if their []\T1/pcr/m/n/10 extension []\T1/pt
m/m/n/10 com-po-nent matches (as a reg-exp) the file
Underfull \hbox (badness 4556) in paragraph at lines 14391--14398
\T1/ptm/m/n/10 name. Ob-jects []\T1/pcr/m/n/10 SweaveSyntaxNoweb []\T1/ptm/m/n/
10 (with []\T1/pcr/m/n/10 extension = "[.][rsRS]nw$"[]\T1/ptm/m/n/10 ) and
[2146] [2147]
Underfull \hbox (badness 2020) in paragraph at lines 14555--14563
\T1/ptm/m/n/10 si-bly use-ful val-ues in-clude `[]\T1/pcr/m/n/10 -h[]\T1/ptm/m/
n/10 ' (fol-low sym-bolic links, also `[]\T1/pcr/m/n/10 -L[]\T1/ptm/m/n/10 ' on
 some plat-forms),
Underfull \hbox (badness 1194) in paragraph at lines 14555--14563
\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 --acls[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --
exclude-backups[]\T1/ptm/m/n/10 ', `[]\T1/pcr/m/n/10 --exclude-vcs[]\T1/ptm/m/n
/10 ' (and sim-i-lar) and on Win-dows
[2148]
Underfull \hbox (badness 1622) in paragraph at lines 14564--14571
[]\T1/ptm/m/n/10 A con-ve-nient and ro-bust way to set op-tions for GNU []\T1/p
cr/m/n/10 tar []\T1/ptm/m/n/10 is via en-vi-ron-ment vari-able
[2149]
Underfull \hbox (badness 5022) in paragraph at lines 14705--14709
[]\T1/ptm/m/n/10 When ar-gu-ment []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 is set t
o the com-mand []\T1/pcr/m/n/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment 
vari-able
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[][][]$\T1/pcr/m/n/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ f
ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/pcr/m/n/10 https : / / pubs .
Underfull \hbox (badness 10000) in paragraph at lines 14712--14715
\T1/pcr/m/n/10 opengroup . org / onlinepubs / 9699919799 / utilities / pax . ht
ml # tag _ 20 _ 92 _
[2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158]
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 []             \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc,
 ...),[] 
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 []             \T1/pcr/m/n/10 instPkgs = installed.packages(lib.loc = lib.loc,
 ...),[] 
[2159]
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[]\T1/ptm/m/n/10 Download method, see [][][]\T1/pcr/m/n/10 download.file[][][][
]\T1/ptm/m/n/10 . Un-used if a non-[]\T1/pcr/m/n/10 NULL
Underfull \hbox (badness 4660) in paragraph at lines 15372--15376
\T1/ptm/m/n/10 able at the repos-i-to-ries, or []\T1/pcr/m/n/10 NULL []\T1/ptm/
m/n/10 which makes an in-ter-nal call to
Underfull \hbox (badness 1694) in paragraph at lines 15386--15390
[]\T1/ptm/m/n/10 by de-fault all in-stalled pack-ages, [][][]\T1/pcr/m/n/10 ins
talled.packages[][][](lib.loc =
Underfull \hbox (badness 10000) in paragraph at lines 15392--15397
[]\T1/ptm/m/n/10 Arguments such as []\T1/pcr/m/n/10 destdir []\T1/ptm/m/n/10 an
d []\T1/pcr/m/n/10 dependencies []\T1/ptm/m/n/10 to be
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\T1/ptm/m/n/10 passed to [][][]\T1/pcr/m/n/10 install.packages[][][] []\T1/ptm/
m/n/10 and []\T1/pcr/m/n/10 ignore_repo_cache[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 15392--15397
[]\T1/pcr/m/n/10 max_repo_cache_age []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 noCac
he []\T1/ptm/m/n/10 to [][][]\T1/pcr/m/n/10 available.packages[][][]
Underfull \hbox (badness 1052) in paragraph at lines 15398--15400
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2160]
Underfull \hbox (badness 10000) in paragraph at lines 15428--15433
[]\T1/pcr/m/n/10 available = NULL []\T1/ptm/m/n/10 make a call to []\T1/pcr/m/n
/10 available.packages(contriburl =
Underfull \hbox (badness 1226) in paragraph at lines 15428--15433
\T1/pcr/m/n/10 contriburl, method = method) []\T1/ptm/m/n/10 and hence by de-fa
ult fil-ters on \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sion, OS type
Underfull \hbox (badness 10000) in paragraph at lines 15449--15454
[]\T1/ptm/m/n/10 Take care when us-ing []\T1/pcr/m/n/10 dependencies []\T1/ptm/
m/n/10 (passed to [][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 )
 with
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[][][]\T1/pcr/m/n/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 download.pa
ckages[][][][]\T1/ptm/m/n/10 ,
[2161]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 15534--15534
 []\T1/pcr/m/n/9 ## Not run: url.show("https://www.stats.ox.ac.uk/pub/datasets/
csb/ch3a.txt") 
[2162] [2163] [2164]
Underfull \hbox (badness 2293) in paragraph at lines 15741--15744
[][][]\T1/pcr/m/n/10 browseVignettes[][][] []\T1/ptm/m/n/10 for an HTML-based v
i-gnette browser; [][][]\T1/pcr/m/n/10 RShowDoc[][][](<basename>,
[2165]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 15757--15757
 []\T1/pcr/m/n/9 ## Note that \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 package = *\TS1/pcr
/m/n/9 ' \T1/pcr/m/n/9 is much faster in the case of many installed packages:[]
 
[2166]
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 []                      \T1/pcr/m/n/9 lm(weight ~ (Time + I(Time^2)) * Diet, d
ata = DAT)))[] 
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 []                 \T1/pcr/m/n/9 nls(weight ~ SSlogis(Time, Asym, xmid, scal),
 data = DD)))[] 
[2167] [2168]
Underfull \hbox (badness 1297) in paragraph at lines 15978--15980
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the ac-tion when that menu i
s se-lected, or
[2169]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 winMenuDel []\T1/ptm/m/n/10 func-tion wil
l delete a menu and all of its items and sub-menus.
[2170] [2171]
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 []\T1/pcr/m/n/10 write.table(x, file = "", append = FALSE, quote = TRUE, sep =
 " ", 
[2172]
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[]\T1/ptm/m/n/10 arguments to []\T1/pcr/m/n/10 write.table[]\T1/ptm/m/n/10 : []
\T1/pcr/m/n/10 append[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 col.names[]\T1/ptm/m/n
/10 , []\T1/pcr/m/n/10 sep[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dec []\T1/ptm/m/n
/10 and
Underfull \hbox (badness 10000) in paragraph at lines 16242--16244
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. []\T1/pcr/m/n/10 file =
[2173] [2174] [2175]) [2176] [2177] [2178] (./KernSmooth-pkg.tex
Chapter 15.
[2179]
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 []\T1/pcr/m/n/10 bkde2D(x, bandwidth, gridsize = c(51L, 51L), range.x, truncat
e = TRUE) 
[2180] [2181] [2182] [2183] [2184]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 518--518
 []\T1/pcr/m/n/10 dpill(x, y, blockmax = 5, divisor = 20, trim = 0.01, proptrun
 = 0.05, 
[2185] [2186] [2187] [2188]) (./MASS-pkg.tex
Chapter 16.
[2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 772--772
 []\T1/pcr/m/n/9 dreg <- cbind(sin = sin(2*pi*beav2$hours/24), cos = cos(2*pi*b
eav2$hours/24))[] 
[2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] [2210]
[2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221]
[2222]
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 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
"F"),[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2422--2422
 []\T1/pcr/m/n/10 dropterm(object, scope, scale = 0, test = c("none", "Chisq", 
"F"),[] 
[2223] [2224] [2225] [2226]
Underfull \hbox (badness 6559) in paragraph at lines 2701--2704
[]\T1/ptm/m/n/10 further ar-gu-ments for []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10
 and graph-i-cal pa-ram-e-ters. Note that
[2227] [2228] [2229]
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[]\T1/pcr/m/n/10 "gamma"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "geometric"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "log-normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lo
gnormal"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 2871--2876
[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "negative binomi
al"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "normal"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "Poisson"[]\T1/ptm/m/n/10 ,
[2230] [2231]
Underfull \hbox (badness 4686) in paragraph at lines 3043--3045
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2232] [2233] [2234]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3243--3243
 []            \T1/pcr/m/n/10 eps.max = .Machine$double.eps^0.25, verbose = FAL
SE, ...)[] 
[2235] [2236]
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 []\T1/pcr/m/n/9 survreg(Surv(time, cens) ~ factor(pair) + treat, gehan, dist =
 "exponential")[] 
[2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247]
Underfull \hbox (badness 1845) in paragraph at lines 4173--4175
[]\T1/ptm/m/n/10 The va-ri-ety of bar-ley ([]\T1/pcr/m/n/10 "manchuria"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "svansota"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "velv
et"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "trebi" []\T1/ptm/m/n/10 and
[2248] [2249] [2250] [2251] [2252] [2253] [2254]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 4667--4667
 []        \T1/pcr/m/n/10 col = 5, xlab = deparse(substitute(data)), bty = "n",
 ...)[] 
[2255] [2256] [2257]
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 []\T1/pcr/m/n/10 lm.ridge(formula, data, subset, na.action, lambda = 0, model 
= FALSE, 
[2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268]
[2269] [2270] [2271]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 5944--5944
 []\T1/pcr/m/n/10 mvrnorm(n = 1, mu, Sigma, tol = 1e-6, empirical = FALSE, EISP
ACK = FALSE) 
[2272]
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 []\T1/pcr/m/n/10 negative.binomial(theta = stop("\TS1/pcr/m/n/10 '\T1/pcr/m/n/
10 theta\TS1/pcr/m/n/10 ' \T1/pcr/m/n/10 must be specified"), link = "log") 
[2273] [2274]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.npk}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6165 ...sical N, P, K Factorial Experiment}{npk}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.6165 ...sical N, P, K Factorial Experiment}{npk}
                                                   [2275] [2276] [2277]
[2278] [2279] [2280]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6585--6585
 []     \T1/pcr/m/n/9 start = list(fixed=c(L75=c(48.7, -0.03), lsc=0.24)), verb
ose = TRUE)))[] 
[2281]
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 []     \T1/pcr/m/n/10 dimen, abbrev = FALSE, ..., cex=0.7, type = c("std", "tr
ellis"))[] 
[2282] [2283] [2284] [2285] [2286] [2287]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7112--7112
 []\T1/pcr/m/n/9 nlmod <- nls(y ~  Const + A * exp(B * x), start=list(Const=100
, A=10, B=1))[] 
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 []     \T1/pcr/m/n/10 method = c("logistic", "probit", "loglog", "cloglog", "c
auchit"))[] 
[2288]
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[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
[2289]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 7277--7277
 []\T1/pcr/m/n/9 house.plr <- polr(Sat ~ Infl + Type + Cont, weights = Freq, da
ta = housing)[] 
[2290] [2291]
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[]\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than 
[]\T1/pcr/m/n/10 min(p,
[2292] [2293]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7516--7516
 []\T1/pcr/m/n/9 fm <- lqs(stack.loss ~ ., data = stackloss, method = "S", nsam
p = "exact")[] 
[2294]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 7581--7581
 []        \T1/pcr/m/n/10 method = c("plug-in", "predictive", "debiased", "looC
V"), ...)[] 
[2295] [2296] [2297] [2298] [2299] [2300]
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[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2301] [2302]
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 []    \T1/pcr/m/n/10 maxit = 20, acc = 1e-4, test.vec = "resid", lqs.control =
 NULL)[] 
Underfull \hbox (badness 1590) in paragraph at lines 8162--8166
[]\T1/ptm/m/n/10 A func-tion to spec-ify the ac-tion to be taken if []\T1/pcr/m
/n/10 NA[]\T1/ptm/m/n/10 s are found. The
[2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313]
[2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 9542--9542
 []\T1/pcr/m/n/10 summary(object, method = c("XtX", "XtWX"), correlation = FALS
E, ...)[] 
[2323]
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[]\T1/ptm/m/n/10 ``Fold your arms! Which is on top'' (Fac-tor, with lev-els []\
T1/pcr/m/n/10 "R on L"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "L on R"[]\T1/ptm/m/n
/10 ,
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[]\T1/ptm/m/n/10 how much the stu-dent smokes. (Fac-tor, lev-els []\T1/pcr/m/n/
10 "Heavy"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Regul" []\T1/ptm/m/n/10 (reg-u-l
arly),
[2324]
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 []\T1/pcr/m/n/10 theta.md(y, mu, dfr, weights, limit = 20, eps = .Machine$doub
le.eps^0.25) 
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 []\T1/pcr/m/n/10 theta.ml(y, mu, n, weights, limit = 10, eps = .Machine$double
.eps^0.25,[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 9756--9756
 []\T1/pcr/m/n/10 theta.mm(y, mu, dfr, weights, limit = 10, eps = .Machine$doub
le.eps^0.25)[] 
[2325] [2326] [2327] [2328] [2329] [2330] [2331] [2332] [2333] [2334] [2335]
[2336] [2337]) (./Matrix-pkg.tex [2338]
Chapter 17.
Underfull \hbox (badness 10000) in paragraph at lines 35--38
[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
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\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
[2339]
Underfull \hbox (badness 1769) in paragraph at lines 89--92
[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
[2340]
Underfull \hbox (badness 2229) in paragraph at lines 153--156
[]\T1/ptm/m/n/10 in gen-eral an ar-bi-trary num-ber of \T1/phv/m/n/10 R \T1/ptm
/m/n/10 ob-jects; here, when the first is
Underfull \hbox (badness 1147) in paragraph at lines 153--156
\T1/ptm/m/n/10 an []\T1/pcr/m/n/10 "[][]abIndex[][][]" []\T1/ptm/m/n/10 vec-tor
, these ar-gu-ments will be con-cate-nated to a new
[2341]
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[]\T1/ptm/m/n/10 these three meth-ods are sim-ply us-ing
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[]\T1/ptm/m/n/10 There are more meth-ods, no-tably also for []\T1/pcr/m/n/10 "[
][]sparseVector[][][]"[]\T1/ptm/m/n/10 's, see
[2342] [2343]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 445--445
 []   \T1/pcr/m/n/9 band(sm5, -1, 1)# "dsyMatrix": symmetric band preserves sym
metry property[] 
[2344]
Underfull \hbox (badness 5119) in paragraph at lines 488--492
[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
Overfull \hbox (4.38043pt too wide) in paragraph at lines 522--522
 []\T1/pcr/m/n/9 s1 <- bandSparse(13, k = -c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
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 []\T1/pcr/m/n/9 s2 <- bandSparse(13, k =  c(0:2, 6), diag = c(diags, diags[2])
, symm=TRUE)[] 
[2345]
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 []\T1/pcr/m/n/9 lLis <- lapply(list(rpois(20, 2), rpois(20,1), rpois(20,3))[c(
1:3,2:3,3:2)],[] 
[2346]
Overfull \hbox (52.98038pt too wide) in paragraph at lines 647--647
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 Fast version of Matrix :: .bd
iag() -- for the case of *many*  (k x k) matrices:[] 
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 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @param lmat list(<mat1>, <mat
2>, ....., <mat_N>)  where each mat_j is a  k x k \TS1/pcr/m/n/9 '\T1/pcr/m/n/9
 matrix\TS1/pcr/m/n/9 '[] 
Overfull \hbox (52.98038pt too wide) in paragraph at lines 649--649
 []\T1/pcr/m/n/9 ##\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 @return a sparse (N*k x N*k) 
matrix of class  \code{"\linkS4class{dgCMatrix}"}.[] 
[2347]
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 []        \T1/pcr/m/n/9 ## \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 i :\TS1/pcr/m/n/9 ' \
T1/pcr/m/n/9 maybe there\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s a faster way (w/o matri
x indexing), but elegant?[] 
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 []        \T1/pcr/m/n/9 i = as.vector(matrix(0L:(M-1L), nrow=k)[, rep(seq_len(
N), each=k)]),[] 
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 []\T1/pcr/m/n/9 l12 <- replicate(12, matrix(rpois(16, lambda = 6.4), 4,4), sim
plify=FALSE)[] 
[2348]
Underfull \hbox (badness 1874) in paragraph at lines 737--740
[]\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t
ion; [][]$\T1/pcr/m/n/10 https : / / netlib . org /
[2349] [2350]
Underfull \hbox (badness 1107) in paragraph at lines 859--864
\T1/ptm/m/n/10 sity'' of []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/
10 y[]\T1/ptm/m/n/10 , see e.g., the \T1/phv/m/n/10 R \T1/ptm/m/n/10 code in []
\T1/pcr/m/n/10 selectMethod(cbind2,
Underfull \hbox (badness 10000) in paragraph at lines 890--895
[]\T1/ptm/m/n/10 Our class def-i-ni-tion help pages men-tion-ing []\T1/pcr/m/n/
10 cbind2() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 rbind2() []\T1/ptm/m/n/10 met
h-ods:
[2351]
Overfull \hbox (72.78088pt too wide) in paragraph at lines 954--954
 []\T1/pcr/m/n/10 ##   solve(a, b, system = c("A","LDLt","LD","DLt","L","Lt","D
","P","Pt"), ...)[] 
[2352]
Underfull \hbox (badness 3612) in paragraph at lines 1041--1044
[]\T1/pcr/m/n/10 signature(from = "CHMfactor", to = "pMatrix") []\T1/ptm/m/n/10
 re-turns the per-mu-ta-tion
[2353]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cho
l}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1141 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic
ate ignored
<to be read again> 
                   \relax 
l.1141 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                   [2354] [2355]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1288--1288
 []\T1/pcr/m/n/9 ## --> see Cholesky() and its examples, for the pivot structur
e & factorization[] 
[2356]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1383--1383
 []\T1/pcr/m/n/10 Cholesky(A, perm = TRUE, LDL = !super, super = FALSE, Imult =
 0, ...) 
Underfull \hbox (badness 2277) in paragraph at lines 1411--1414
[]\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer
-ent types of ma-tri-ces. Use
[2357] [2358]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1485--1485
 []\T1/pcr/m/n/9 ## hence, the identical() check *should* work, but fails on so
me GOTOblas:[] 
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 []\T1/pcr/m/n/9 dq <- function(ch) paste(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 "\TS1/p
cr/m/n/9 '\T1/pcr/m/n/9 ,ch,\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 "\TS1/pcr/m/n/9 '\T1/
pcr/m/n/9 , sep="") ## dQuote(<UTF-8>) gives bad plots[] 
Overfull \hbox (74.58035pt too wide) in paragraph at lines 1507--1507
 []\T1/pcr/m/n/9 (opts <- expand.grid(perm = c(TRUE,FALSE), LDL = c(TRUE,FALSE)
, super = c(FALSE,TRUE)))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1516--1516
 []\T1/pcr/m/n/9 str(re <- lapply(rr, expand), max.level=2) ## each has a \TS1/
pcr/m/n/9 '\T1/pcr/m/n/9 P\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 and a \TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 L\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 matrix[] 
[2359]
Underfull \hbox (badness 10000) in paragraph at lines 1552--1559
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("Cholesky", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 4673) in paragraph at lines 1552--1559
[]\T1/pcr/m/n/10 new("BunchKaufman", ...)[]\T1/ptm/m/n/10 , etc, or rather by c
alls of the form [][][]\T1/pcr/m/n/10 chol[][][](pm) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 1783) in paragraph at lines 1587--1591
[]\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1
/ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend
Underfull \hbox (badness 1221) in paragraph at lines 1603--1609
\T1/ptm/m/n/10 ply an $\OML/cmm/m/it/10 n \OMS/cmsy/m/n/10 ^^B \OML/cmm/m/it/10
 n$ \T1/ptm/m/n/10 nu-meric [][][]\T1/pcr/m/n/10 matrix[][][][]\T1/ptm/m/n/10 .
 Hence, for com-pat-i-bil-ity, the []\T1/pcr/m/n/10 "Cholesky" []\T1/ptm/m/n/10
 and
[2360]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col
Sums}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1644 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.1644 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.1645 \aliasA{colMeans}{colSums}{colMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.1658 \aliasA{rowMeans}{colSums}{rowMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1665 \aliasA{rowSums}{colSums}{rowSums}
                                          [2361]
Underfull \hbox (badness 2922) in paragraph at lines 1715--1719
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sparse, i.e., i
n-her-it-ing from
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\T1/ptm/m/n/10 class [][][]\T1/pcr/m/n/10 sparseVector[][][][]\T1/ptm/m/n/10 . 
Only ap-pli-ca-ble when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is in-her-it-ing fr
om a
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[][][]\T1/pcr/m/n/10 dimnames[][][](x) []\T1/ptm/m/n/10 are only kept (as [][][
]\T1/pcr/m/n/10 names[][][](v)[]\T1/ptm/m/n/10 ) when the re-sult-ing []\T1/pcr
/m/n/10 v []\T1/ptm/m/n/10 is [][][]\T1/pcr/m/n/10 numeric[][][][]\T1/ptm/m/n/1
0 , since
[2362] [2363]
Underfull \hbox (badness 3547) in paragraph at lines 1880--1883
[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2364] [2365] [2366] [2367] [2368]
Underfull \hbox (badness 7379) in paragraph at lines 2383--2385
[]\T1/pcr/m/n/10 signature(x = "dgCMatrix")[]\T1/ptm/m/n/10 : com-putes the LU 
de-com-po-si-tion of a square
[2369] [2370] [2371]
Underfull \hbox (badness 4846) in paragraph at lines 2608--2612
[]\T1/ptm/m/n/10 Note that both []\T1/pcr/m/n/10 new(.) []\T1/ptm/m/n/10 and []
[][]\T1/pcr/m/n/10 spMatrix[][][] []\T1/ptm/m/n/10 con-struc-tors for []\T1/pcr
/m/n/10 "dgTMatrix" []\T1/ptm/m/n/10 (and other
Underfull \hbox (badness 2717) in paragraph at lines 2613--2617
[]\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in
 more than one pos-si-ble
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[]\T1/ptm/m/n/10 Class [][][]\T1/pcr/m/n/10 dgCMatrix[][][] []\T1/ptm/m/n/10 or
 the su-per-classes [][][]\T1/pcr/m/n/10 dsparseMatrix[][][] []\T1/ptm/m/n/10 a
nd [][][]\T1/pcr/m/n/10 TsparseMatrix[][][][]\T1/ptm/m/n/10 ;
[2372]
Underfull \hbox (badness 5231) in paragraph at lines 2657--2662
[]\T1/ptm/m/n/10 Construct a for-mally di-ag-o-nal [][][]\T1/pcr/m/n/10 Matrix[
][][][]\T1/ptm/m/n/10 , i.e., an ob-ject in-her-it-ing from vir-tual class
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 []\T1/pcr/m/n/10 .sparseDiagonal(n, x = NULL, uplo = "U", shape = "t", unitri 
= TRUE, kind, cols)[] 
[2373]
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[]\T1/pcr/m/n/10 .trDiagonal() []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 .symDiagon
al() []\T1/ptm/m/n/10 are sim-ple wrap-pers, for
Underfull \hbox (badness 6792) in paragraph at lines 2724--2727
[]\T1/pcr/m/n/10 .sparseDiagonal(shape = "t") []\T1/ptm/m/n/10 and []\T1/pcr/m/
n/10 .sparseDiagonal(shape = "s")[]\T1/ptm/m/n/10 , re-spec-
[2374]
Underfull \hbox (badness 3646) in paragraph at lines 2821--2824
[]\T1/ptm/m/n/10 the [][][]\T1/pcr/m/n/10 dimnames[][][][]\T1/ptm/m/n/10 , a []
[][]\T1/pcr/m/n/10 list[][][][]\T1/ptm/m/n/10 , see the [][][]\T1/pcr/m/n/10 Ma
trix[][][] []\T1/ptm/m/n/10 class de-scrip-tion. Typ-i-cally
Underfull \hbox (badness 6542) in paragraph at lines 2856--2860
[]\T1/pcr/m/n/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these gr
oup meth-ods re-turn a
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[]\T1/pcr/m/n/10 signature(e1 = "ddiMatrix", e2="denseMatrix")[]\T1/ptm/m/n/10 
: the re-sult is from class
[2375]
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[]\T1/pcr/m/n/10 (object = "diagonalMatrix")[]\T1/ptm/m/n/10 : Re-turns an ob-j
ect of S3 class
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[][][]\T1/pcr/m/n/10 Diagonal[][][]() []\T1/ptm/m/n/10 as con-struc-tor of thes
e ma-tri-ces, and [][][]\T1/pcr/m/n/10 isDiagonal[][][][]\T1/ptm/m/n/10 . [][][
]\T1/pcr/m/n/10 ddiMatrix[][][] []\T1/ptm/m/n/10 and
[2376] [2377] [2378]
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[]\T1/pcr/m/n/10 signature(x = "dMatrix", digits = "numeric")[]\T1/ptm/m/n/10 :
 this group con-tains
[2379] [2380]
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 []\T1/pcr/m/n/9 stopifnot(all.equal(S9p0, S9p))# same as as default, but diffe
rent from the random one[] 
[2381]
Underfull \hbox (badness 2469) in paragraph at lines 3386--3389
[]\T1/pcr/m/n/10 signature(x = "dpoMatrix")[]\T1/ptm/m/n/10 : Re-turns the [][]
[]\T1/pcr/m/n/10 determinant[][][] []\T1/ptm/m/n/10 of []\T1/pcr/m/n/10 x[]\T1/
ptm/m/n/10 , via
[2382]
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[]\T1/ptm/m/n/10 Currently the va-lid-ity meth-ods for these classes such as
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[][][]\T1/pcr/m/n/10 getValidity[][][](getClass("dpoMatrix")) []\T1/ptm/m/n/10 
for ef-fi-ciency rea-sons only check the di-
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\T1/pcr/m/n/10 error=identity), "error") []\T1/ptm/m/n/10 . In-deed, when \T1/p
tm/m/it/10 co-erc-ing \T1/ptm/m/n/10 to these classes, a ver-sion
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\T1/ptm/m/n/10 of [][][]\T1/pcr/m/n/10 Cholesky[][][]() []\T1/ptm/m/n/10 or [][
][]\T1/pcr/m/n/10 chol[][][]() []\T1/ptm/m/n/10 is typ-i-cally used, e.g., see 
[]\T1/pcr/m/n/10 selectMethod("coerce",
[2383]
Underfull \hbox (badness 10000) in paragraph at lines 3541--3545
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsCMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 2103) in paragraph at lines 3541--3545
[]\T1/pcr/m/n/10 new("dsTMatrix", ...)[]\T1/ptm/m/n/10 , or au-to-mat-i-cally v
ia e.g., []\T1/pcr/m/n/10 as(*, "symmetricMatrix")[]\T1/ptm/m/n/10 ,
[2384]
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[]\T1/pcr/m/n/10 signature(x = "dsCMatrix", pivot = "logical")[]\T1/ptm/m/n/10 
: Re-turns (and stores) the
[2385] [2386]
Underfull \hbox (badness 10000) in paragraph at lines 3739--3744
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "dMatrix"[]\T1/ptm/m/n/10 , by class []
\T1/pcr/m/n/10 "dsparseMatrix"[]\T1/ptm/m/n/10 , class []\T1/pcr/m/n/10 "sparse
Matrix"[]\T1/ptm/m/n/10 , by
Underfull \hbox (badness 6961) in paragraph at lines 3739--3744
\T1/ptm/m/n/10 class []\T1/pcr/m/n/10 "dsparseMatrix" []\T1/ptm/m/n/10 or []\T1
/pcr/m/n/10 "RsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/pcr/m/n/10 "compMatri
x" []\T1/ptm/m/n/10 by class
Underfull \hbox (badness 1400) in paragraph at lines 3751--3754
[]\T1/pcr/m/n/10 signature(x = "dsRMatrix", uplo = "character")[]\T1/ptm/m/n/10
 : if []\T1/pcr/m/n/10 uplo ==
[2387]
Underfull \hbox (badness 10000) in paragraph at lines 3802--3804
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form []\T1/pcr/m/n/10 
new("dsyMatrix", ...) []\T1/ptm/m/n/10 or
Underfull \hbox (badness 1365) in paragraph at lines 3838--3841
[]\T1/pcr/m/n/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/10
 , or []\T1/pcr/m/n/10 x = "dsyMatrix"
[2388]
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 []\T1/pcr/m/n/9 stopifnot(all(S1 == S2)) # equal "seen as matrix", but differ 
internally :[] 
[2389] [2390]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3989--3989
 []\T1/pcr/m/n/9 U5 <- new("dtCMatrix", i= c(1L, 0:3), p=c(0L,0L,0:2, 5L), Dim 
= c(5L, 5L),[] 
Underfull \hbox (badness 3635) in paragraph at lines 4043--4047
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ddenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Cla
ss
Underfull \hbox (badness 10000) in paragraph at lines 4052--4055
[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
[2391]
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[]\T1/pcr/m/n/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/n
/10 : the
[2392] [2393]
Underfull \hbox (badness 2065) in paragraph at lines 4224--4228
[]\T1/pcr/m/n/10 signature(a = "dtrMatrix", b = "....")[]\T1/ptm/m/n/10 efficie
ntely use a ``for-ward-solve'' or
[2394] [2395] [2396] [2397]
Overfull \hbox (112.38031pt too wide) in paragraph at lines 4481--4481
 []\T1/pcr/m/n/9 str(jgl009 <- ## https://math.nist.gov/MatrixMarket/data/Harwe
ll-Boeing/counterx/counterx.html[] 
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 [] \T1/pcr/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB
/Boeing/msc00726.tar.gz"))))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4492--4492
 []\T1/pcr/m/n/9 ## Store as MatrixMarket (".mtx") file, here inside temporary 
dir./folder:[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4495--4495
 []\T1/pcr/m/n/9 file.info(MMfile)[,c("size", "ctime")] # (some confirmation of
 the file\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s)[] 
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 []\T1/pcr/m/n/9 ## has columns (i, j, x) -> we can use via do.call() as argume
nts to sparseMatrix():[] 
[2398] [2399] [2400]
Underfull \hbox (badness 2237) in paragraph at lines 4683--4688
[]\T1/ptm/m/n/10 a string ([]\T1/pcr/m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n
/10 "R"[]\T1/ptm/m/n/10 , or []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 ) spec-i-fy-i
ng the stor-age of the re-sult as
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[]\T1/ptm/m/n/10 a string, one of []\T1/pcr/m/n/10 "trace", "sumLog", "prod", "
min", "max",
[2401] [2402] [2403] [2404]
Underfull \hbox (badness 10000) in paragraph at lines 5033--5038
[]\T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 compMatrix[][][][]\T1/ptm/m/n/10 
, and the non-general vir-tual classes: [][][]\T1/pcr/m/n/10 symmetricMatrix[][
][][]\T1/ptm/m/n/10 ,
[2405]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5114--5114
 []\T1/pcr/m/n/9 if(isTRUE(try(require(graph)))) { ## super careful .. for "che
cking reasons" 
[2406]
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 []  \T1/pcr/m/n/9 show(a1 <- sparseMatrix(i= c(1:4),   j=c(2:4,1),   x = 2,   
 dimnames=dns))[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5120--5120
 []  \T1/pcr/m/n/9 show(a2 <- sparseMatrix(i= c(1:4,4), j=c(2:4,1:2), x = TRUE,
 dimnames=dns))[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 5127--5127
 []  \T1/pcr/m/n/9 a. <- sparseMatrix(i= 4:1, j=1:4, dimnames=list(n4,n4), give
C=FALSE) # no \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 x\TS1/pcr/m/n/9 '[] 
[2407] [2408]
Underfull \hbox (badness 4120) in paragraph at lines 5266--5269
[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
][]\T1/pcr/m/n/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use
Overfull \hbox (47.58038pt too wide) in paragraph at lines 5284--5284
 []\T1/pcr/m/n/9 stopifnot(!is.null(leg <- imgC$legend), is.list(leg$right)) # 
failed for 2 days ..[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5304--5304
 []\T1/pcr/m/n/9 ## Using (xlim,ylim) has advantage : matrix dimension and (col
/row) indices:[] 
[2409]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 5310--5310
 [] \T1/pcr/m/n/9 I2 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE,    
    border.col=NA)[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 5311--5311
 [] \T1/pcr/m/n/9 I3 <- image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd
=2, border.col=NA)[] 
Overfull \hbox (144.78027pt too wide) in paragraph at lines 5315--5315
 []\T1/pcr/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor
der.col = adjustcolor("skyblue", 1/2))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 5323--5323
 []\T1/pcr/m/n/9 image(USCounties, useRaster = TRUE) # should not suffer from a
nti-aliasing[] 
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 []   \T1/pcr/m/n/9 ## and now look at the *.png image in a viewer you can easi
ly zoom in and out[] 
[2410]
Underfull \hbox (badness 1817) in paragraph at lines 5420--5429
[]\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o
r \T1/ptm/m/n/10 us-ing []\T1/pcr/m/n/10 drop=FALSE[]\T1/ptm/m/n/10 ) stays wit
hin the
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[]\T1/pcr/m/n/10 signature(x = "matrix", y = "indMatrix") []\T1/ptm/m/n/10 and 
other sig-na-tures (use
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[]\T1/pcr/m/n/10 signature(from = "integer", to = "indMatrix")[]\T1/ptm/m/n/10 
: This en-ables typ-i-cal
[2411]
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[]\T1/pcr/m/n/10 signature(from = "list", to = "indMatrix")[]\T1/ptm/m/n/10 : T
he list must have two
Underfull \hbox (badness 3302) in paragraph at lines 5488--5491
[]\T1/pcr/m/n/10 signature(X = "indMatrix", Y = "indMatrix")[]\T1/ptm/m/n/10 : 
re-turn the kro-necker
[2412] [2413] [2414] [2415]
Overfull \hbox (138.78088pt too wide) in paragraph at lines 5872--5872
 []\T1/pcr/m/n/10 isSymmetric(object, tol = 100 * .Machine$double.eps, tol1 = 8
 * tol, checkDN = TRUE, ...)[] 
[2416]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 5878--5878
 []\T1/pcr/m/n/10 isSymmetric(object, tol = 100 * .Machine$double.eps, checkDN 
= TRUE, ...)[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5937--5937
 []\T1/pcr/m/n/9 isSymmetric(as(M, "generalMatrix")) # still symmetric, even if
 not "formally"[] 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 5941--5941
 []\T1/pcr/m/n/9 showMethods("isSymmetric", includeDefs = TRUE) # includes S3 g
eneric from base[] 
[2417]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 6033--6033
 []\T1/pcr/m/n/9 isTriangular(as(M, "generalMatrix")) # still triangular, even 
if not "formally"[] 
[2418]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 6058--6058
 []\T1/pcr/m/n/10 KhatriRao(X, Y = X, FUN = "*", sparseY = TRUE, make.dimnames 
= FALSE) 
[2419]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6138--6138
 []\T1/pcr/m/n/9 stopifnot(all(K1 <- KhatriRao(nd, zm) == 0), identical(dim(K1)
, c(12L, 4L)),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6139--6139
 []          \T1/pcr/m/n/9 all(K2 <- KhatriRao(zm, nd) == 0), identical(dim(K2)
, c(12L, 4L)))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6146--6146
 []  \T1/pcr/m/n/9 identical(dimnames(KhatriRao(m, d0, make.dimnames=TRUE)), di
mnames(Kmd)))[] 
[2420] [2421]
Underfull \hbox (badness 1062) in paragraph at lines 6307--6310
[]\T1/pcr/m/n/10 ldenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
[2422]
Underfull \hbox (badness 6063) in paragraph at lines 6333--6336
[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2423]
Underfull \hbox (badness 2635) in paragraph at lines 6478--6483
[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ldenseMatrix"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 4229) in paragraph at lines 6478--6483
\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 6486--6489
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2424]
Underfull \hbox (badness 10000) in paragraph at lines 6553--6563
[]\T1/pcr/m/n/10 lsTMatrix[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 ltTMatrix[]\T
1/ptm/m/n/10 ) or in com-pressed column-oriented form (class
Underfull \hbox (badness 1242) in paragraph at lines 6553--6563
[][][]\T1/pcr/m/n/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pc
r/m/n/10 lgCMatrix[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lsCMatrix[]\T1/ptm/m/n/10
 , and []\T1/pcr/m/n/10 ltCMatrix[]\T1/ptm/m/n/10 ) or--\T1/ptm/m/it/10 rarely\
T1/ptm/m/n/10 --in
[2425]
Underfull \hbox (badness 3179) in paragraph at lines 6635--6638
[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2426]
Underfull \hbox (badness 10000) in paragraph at lines 6720--6723
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2427]
Underfull \hbox (badness 10000) in paragraph at lines 6781--6784
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2428]
Underfull \hbox (badness 1430) in paragraph at lines 6855--6861
\T1/ptm/m/n/10 should be sig-nalled when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is
 sin-gu-lar. When []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 is sin-gu-lar, []\T1/pcr/
m/n/10 lu(x,
Underfull \hbox (badness 1675) in paragraph at lines 6880--6883
[]\T1/pcr/m/n/10 lu() []\T1/ptm/m/n/10 is a generic func-tion with spe-cial met
h-ods for dif-fer-ent types of ma-tri-ces. Use
[2429]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6952--6952
 []                                \T1/pcr/m/n/9 # q is a 0-based permutation o
f the columns[] 
[2430] [2431]
Underfull \hbox (badness 10000) in paragraph at lines 7092--7095
[]\T1/ptm/m/n/10 vector of all non-zero en-tries of []\T1/pcr/m/n/10 x[]\T1/ptm
/m/n/10 ; ex-ists \T1/ptm/b/n/10 only \T1/ptm/m/n/10 when []\T1/pcr/m/n/10 as(x
,
Underfull \hbox (badness 1490) in paragraph at lines 7114--7116
[]\T1/pcr/m/n/10 mat2triplet() []\T1/ptm/m/n/10 is con-cep-tu-ally the \T1/ptm/
m/it/10 in-verse \T1/ptm/m/n/10 func-tion of [][][]\T1/pcr/m/n/10 spMatrix[][][
] []\T1/ptm/m/n/10 and (one case of)
[2432] [2433] [2434]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.det}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7305 \aliasA{det}{Matrix-class}{det}
                                      
Underfull \hbox (badness 1337) in paragraph at lines 7393--7396
[]\T1/pcr/m/n/10 signature(x = "Matrix", value = "list")[]\T1/ptm/m/n/10 : set 
the []\T1/pcr/m/n/10 dimnames []\T1/ptm/m/n/10 to a
Underfull \hbox (badness 10000) in paragraph at lines 7406--7409
[2435]
Underfull \hbox (badness 10000) in paragraph at lines 7415--7417
[]\T1/pcr/m/n/10 signature(from = "ANY", to = "Matrix")[]\T1/ptm/m/n/10 : This 
re-lies on a cor-rect
[2436]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp
cent.*.Rpcent.}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7478 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.crossprod}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.7575 ...A{crossprod}{matrix-products}{crossprod}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.7676 ...tcrossprod}{matrix-products}{tcrossprod}
                                                  
Underfull \hbox (badness 1881) in paragraph at lines 7777--7783
\T1/ptm/m/n/10 ally im-ple-mented ef-fi-ciently with-out com-put-ing [][][]\T1/
pcr/m/n/10 t[][][](.)[]\T1/ptm/m/n/10 's un-nec-es-sar-ily. They also re-turn
[2437]
Underfull \hbox (badness 10000) in paragraph at lines 7850--7853
[]\T1/pcr/m/n/10 signature(x = "dgeMatrix", y = "dgeMatrix")[]\T1/ptm/m/n/10 : 
Ma-trix mul-ti-pli-ca-tion;
Underfull \hbox (badness 10000) in paragraph at lines 7853--7858
[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-tures (use
Underfull \hbox (badness 3557) in paragraph at lines 7853--7858
[]\T1/pcr/m/n/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-tr
ix mul-ti-pli-ca-tion. Mul-ti-
Underfull \hbox (badness 6608) in paragraph at lines 7858--7862
\T1/ptm/m/n/10 sig-na-tures, use []\T1/pcr/m/n/10 showMethods("crossprod", clas
s = "dgeMatrix")[]\T1/ptm/m/n/10 , ma-trix
Underfull \hbox (badness 1552) in paragraph at lines 7868--7869
[]\T1/pcr/m/n/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and 
other sig-na-
[2438] [2439]
Underfull \hbox (badness 1062) in paragraph at lines 8043--8046
[]\T1/pcr/m/n/10 ndenseMatrix []\T1/ptm/m/n/10 is the vir-tual class of all den
se \T1/ptm/b/n/10 l\T1/ptm/m/n/10 ogical (S4) ma-tri-ces. It ex-tends both
[2440]
Underfull \hbox (badness 6063) in paragraph at lines 8075--8078
[]\T1/pcr/m/n/10 signature(x = "ndenseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2441]
Underfull \hbox (badness 3312) in paragraph at lines 8131--8133
[]\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/pcr/m/n/10 X <- (X + t(X))/2 []
\T1/ptm/m/n/10 should be done, af-ter []\T1/pcr/m/n/10 X <-
[2442] [2443]
Overfull \hbox (85.38034pt too wide) in paragraph at lines 8233--8233
 []   \T1/pcr/m/n/9 all.equal(n.A.m, unname(as.matrix(n.A$mat)), tolerance = 1e
-15)# seen rel.d.= 1.46e-16[] 
Overfull \hbox (36.7804pt too wide) in paragraph at lines 8273--8273
 []\T1/pcr/m/n/9 stopifnot(all.equal(ncr, ncF))# norm type does not matter at a
ll in this example[] 
Underfull \vbox (badness 10000) has occurred while \output is active [2444]
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[]\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-rec
tly. Class []\T1/pcr/m/n/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/pcr/m/n/
10 "ndenseMatrix"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 4229) in paragraph at lines 8329--8334
\T1/ptm/m/n/10 Class []\T1/pcr/m/n/10 "denseMatrix"[]\T1/ptm/m/n/10 , by class 
[]\T1/pcr/m/n/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class []\T1/pcr/m/n/10 "Matri
x"[]\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 10000) in paragraph at lines 8337--8340
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ); use, e.g.,
[2445]
Underfull \hbox (badness 2521) in paragraph at lines 8406--8412
[]\T1/pcr/m/n/10 signature(from = "matrix", to = "nMatrix")[]\T1/ptm/m/n/10 : N
ote that these co-er-cions
[2446]
Underfull \hbox (badness 1867) in paragraph at lines 8517--8519
[]\T1/ptm/m/n/10 fast sim-
[2447]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor
m}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8557 \HeaderA{norm}{Matrix Norms}{norm}
                                         pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.8557 \HeaderA{norm}{Matrix Norms}{norm}
                                          [2448]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 8650--8650
 []\T1/pcr/m/n/9 A <- sparseMatrix(i, j, x = x)                      ##  8 x 10
 "dgCMatrix"[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 8651--8651
 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 8652--8652
 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
Underfull \hbox (badness 2401) in paragraph at lines 8708--8718
[]\T1/ptm/m/n/10 These can be stored in the ``triplet'' form ([][][]\T1/pcr/m/n
/10 TsparseMatrix[][][][]\T1/ptm/m/n/10 , sub-classes []\T1/pcr/m/n/10 ngTMatri
x[]\T1/ptm/m/n/10 ,
[2449]
Underfull \hbox (badness 3179) in paragraph at lines 8779--8782
[]\T1/pcr/m/n/10 signature(x = "lsparseMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cal
ly equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2450]
Underfull \hbox (badness 10000) in paragraph at lines 8859--8862
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2451]
Underfull \hbox (badness 10000) in paragraph at lines 8923--8926
[]\T1/ptm/m/n/10 Currently, mainly [][][]\T1/pcr/m/n/10 t[][][]() []\T1/ptm/m/n
/10 and co-er-cion meth-ods (for [][][]\T1/pcr/m/n/10 as[][][](.)[]\T1/ptm/m/n/
10 ; use, e.g.,
[2452] [2453]
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "missing", dr
op =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "NULL", j = "missing", drop 
=
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "index", j = "missing", drop
 =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "matrix", j = "missing", dro
p =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "lMatrix", j = "missing", dr
op =
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[]\T1/pcr/m/n/10 signature(x = "packedMatrix", i = "missing", j = "NULL", drop 
=
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op =
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p =
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op =
[2454]
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[2455]
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[]\T1/pcr/m/n/10 signature(x = "matrix", y = "pMatrix") []\T1/ptm/m/n/10 and ot
her sig-na-tures (use
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[]\T1/pcr/m/n/10 signature(from = "integer", to = "pMatrix")[]\T1/ptm/m/n/10 : 
This is en-ables typ-i-cal
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[]\T1/pcr/m/n/10 signature(x = "pMatrix", logarithm="logical")[]\T1/ptm/m/n/10 
: Since per-mu-ta-
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\T1/ptm/m/n/10 trix; note that []\T1/pcr/m/n/10 solve(P) []\T1/ptm/m/n/10 is id
en-ti-cal to []\T1/pcr/m/n/10 t(P) []\T1/ptm/m/n/10 for per-mu-ta-tion ma-tri-c
es. See
[2456] [2457]
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 []               \T1/pcr/m/n/10 col.names, note.dropping.colnames = TRUE, uniD
iag = TRUE,[] 
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 []\T1/pcr/m/n/10 printSpMatrix(x, digits = NULL, maxp = max(100L, getOption("m
ax.print")),[] 
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 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
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 []\T1/pcr/m/n/10 printSpMatrix2(x, digits = NULL, maxp = max(100L, getOption("
max.print")),[] 
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 []              \T1/pcr/m/n/10 zero.print = ".", col.names, note.dropping.coln
ames = TRUE,[] 
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[]\T1/ptm/m/n/10 logical or string spec-i-fy-ing if and how col-umn names of []
\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 should
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\T1/ptm/m/n/10 be printed, pos-si-bly ab-bre-vi-ated. The de-fault is taken fro
m
[2458] [2459]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.qr}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9364 \aliasA{qr}{qr-methods}{qr}
                                   [2460]
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 []\T1/pcr/m/n/9 stopifnot(identical(dimnames(X), dnX))# some versions changed 
X\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 s dimnames![] 
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 []\T1/pcr/m/n/9 qxrLA <- qr(m(Xr), LAPACK=TRUE) # => qr.fitted(), qr.resid() n
ot supported[] 
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 []\T1/pcr/m/n/9 ##----- rank-deficient ("singular") case ---------------------
---------------[] 
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 []\T1/pcr/m/n/9 (X. <- drop0(Q. %*% R.[, qI], tol=tolE))## just = X, incl. cor
rect colnames[] 
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[]\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/pcr/m/n/10 
qr[][][](x, tol,
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[]\T1/ptm/m/n/10 is for back com-pat-i-bil-ity; for dense []\T1/pcr/m/n/10 x[]\
T1/ptm/m/n/10 , it cor-re-sponds to
[2462] [2463]
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 []\T1/pcr/m/n/9 ## The meaning of \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 tol\TS1/pcr/m/
n/9 ' \T1/pcr/m/n/9 for method="qrLINPACK" and *dense* x is not entirely "scale
 free"[] 
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 []\T1/pcr/m/n/9 sapply(meths, function(.m.) rankMatrix(M15, method = .m., tol 
= 1e-7)) # all 14[] 
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 []\T1/pcr/m/n/9 (st1 <- system.time(r1 <- rankMatrix(L)))                # war
ning+ ~1.5 sec (2013)[] 
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 []\T1/pcr/m/n/9 (st2 <- system.time(r2 <- rankMatrix(L, method = "qr"))) # con
siderably faster![] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9688 ... the Reciprocal Condition Number}{rcond}
                                                   [2464] [2465]
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 []\T1/pcr/m/n/9 rcond(x2 <- cbind(x1, 2:11))# practically 0, since x2 does not
 have full rank[] 
[2466] [2467] [2468]
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\T1/ptm/m/n/10 dices, if not []\T1/pcr/m/n/10 symmetric [][]sample.int[][][](nr
ow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/pcr/m/n/10 rand.x []\T1/ptm/m/n
/10 is not
[2469] [2470]
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[]\T1/ptm/m/n/10 numeric square Ma-trix (in-her-it-ing from class []\T1/pcr/m/n
/10 "Matrix"[]\T1/ptm/m/n/10 ) or tra-di-tional
[2471]
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 []                           \T1/pcr/m/n/9 z[order(Mod(z), decreasing=TRUE)]})
, tolerance = 1e-13),[] 
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 []\T1/pcr/m/n/9 ## For the faint of heart, we provide Schur() also for traditi
onal matrices:[] 
[2472]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sol
ve}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10265 \aliasA{solve}{solve-methods}{solve}
                                            
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 []\T1/pcr/m/n/10 ## solve(a, b, ...) # the two-argument version, almost always
 preferred to 
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 []\T1/pcr/m/n/10 solve(a, b, system = c("A", "LDLt", "LD", "DLt", "L", "Lt", "
D", "P", "Pt"), ...)[] 
[2473]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 solve []\T1/ptm/m/n/10 meth-ods for a
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[]\T1/ptm/m/n/10 (for all []\T1/pcr/m/n/10 b[]\T1/ptm/m/n/10 ) work via []\T1/p
cr/m/n/10 as(a,
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list []\T1/pcr/m/n/10 (
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[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list []\T1/pcr/m/n/10 (
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\T1/pcr/m/n/10 sparse=FALSE, tol = .Machine$double.eps ) []\T1/ptm/m/n/10 : Che
cks if []\T1/pcr/m/n/10 a []\T1/ptm/m/n/10 is sym-met-ric,
[2474]
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[]\T1/ptm/m/n/10 All these meth-ods first try Cholmod's
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[]\T1/ptm/m/n/10 all end up call-ing LA-PACK rou-tines
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[]\T1/ptm/m/n/10 works via []\T1/pcr/m/n/10 as(b,
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[]\T1/ptm/m/n/10 these meth-ods typ-i-cally use
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[]\T1/ptm/m/n/10 all work via []\T1/pcr/m/n/10 as(a,
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[][][]\T1/pcr/m/n/10 solve[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lu[][][
][]\T1/ptm/m/n/10 , and class doc-u-men-ta-tions [][][]\T1/pcr/m/n/10 CHMfactor
[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 sparseLU[][][][]\T1/ptm/m/n/10 , 
and
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 []\T1/pcr/m/n/9 image(ia0 <- solve(a)) # checker board, dense [but really, a i
s singular!][] 
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 []  \T1/pcr/m/n/9 ## Fails on 32-bit [Fedora 19, R 3.0.2] from Matrix 1.1-0 on
 [FIXME ??] only[] 
[2475]
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[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu
la and data frame
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 []   \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs
parse)[] 
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 []   \T1/pcr/m/n/10 drop.unused.levels = TRUE, repr = c("C", "R", "T"), giveCs
parse,[] 
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[]\T1/ptm/m/n/10 a data frame cre-ated with [][][]\T1/pcr/m/n/10 model.frame[][
][][]\T1/ptm/m/n/10 . If an-other sort of ob-ject,
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[]\T1/ptm/m/n/10 character string or []\T1/pcr/m/n/10 NULL []\T1/ptm/m/n/10 or 
(co-er-ca-ble to)
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[]\T1/pcr/m/n/10 "[][]sparseMatrix[][][]"[]\T1/ptm/m/n/10 , spec-i-fy-ing the c
on-trasts to be ap-plied to the
[2476]
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[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
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[]\T1/pcr/m/n/10 sparse.model.matrix []\T1/ptm/m/n/10 has been changed to []\T1
/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , 2010-07, for
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[][][]\T1/pcr/m/n/10 character[][][] []\T1/ptm/m/n/10 string, one of []\T1/pcr/
m/n/10 "C"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "T"[]\T1/ptm/m/n/10 , or []\T1/pc
r/m/n/10 "R"[]\T1/ptm/m/n/10 , spec-i-fy-ing the sparse
[2477]
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0, 0),[] 
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f30, drop=FALSE),"CsparseMatrix"), dim(M)
 == c(3, 0),[] 
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 []  \T1/pcr/m/n/9 is(M <- fac2sparse(f12, drop= TRUE),"CsparseMatrix"), dim(M)
 == c(0,12),[] 
[2478]
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 []\T1/pcr/m/n/9 stopifnot(all.equal(pA, pLU, tolerance = 1e-12)) # (incl. perm
uted row- and column-names)[] 
[2479]
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[]\T1/ptm/m/n/10 This in-ter-face is rec-om-mended over di-rect con-struc-tion 
via calls such as
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 []             \T1/pcr/m/n/10 symmetric = FALSE, triangular = FALSE, index1 = 
TRUE,[] 
[2480]
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\T1/ptm/m/n/10 of the sparse ma-trix re-sult, i.e., spec-i-fy-ing one of the vi
r-tual classes
[2481]
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[]\T1/ptm/m/n/10 The stan-dard \T1/phv/m/n/10 R [][][]\T1/pcr/m/n/10 xtabs[][][
](*, sparse=TRUE)[]\T1/ptm/m/n/10 , for sparse ta-bles and
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 []\T1/pcr/m/n/9 (A <- sparseMatrix(i, j, x = x))                    ##  8 x 10
 "dgCMatrix"[] 
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 []\T1/pcr/m/n/9 (sA <- sparseMatrix(i, j, x = x, symmetric = TRUE)) ## 10 x 10
 "dsCMatrix"[] 
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 []\T1/pcr/m/n/9 (tA <- sparseMatrix(i, j, x = x, triangular= TRUE)) ## 10 x 10
 "dtCMatrix"[] 
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 []\T1/pcr/m/n/9 (AA <- sparseMatrix(c(1,3:8), c(2,9,6:10), x = 7 * (1:7), dims
 = c(10,20)))[] 
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 []\T1/pcr/m/n/9 ## i, j and x can be in an arbitrary order, as long as they ar
e consistent[] 
[2482]
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 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted
 if necessary:[] 
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 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 
1:6, dimnames = dn)[] 
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 []\T1/pcr/m/n/9 ## pointers example in converting from other sparse matrix rep
resentations.[] 
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 []   \T1/pcr/m/n/9 nzchar(dfil <- system.file("extdata", "rua_32_ax.rua", pack
age = "SparseM"))) {[] 
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 []  \T1/pcr/m/n/9 XX <- sparseMatrix(j = X@ja, p = X@ia - 1L, x = X@ra, dims =
 X@dimension)[] 
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[]\T1/pcr/m/n/10 (x = "sparseMatrix", logarithm=TRUE)[]\T1/ptm/m/n/10 : [][][]\
T1/pcr/m/n/10 determinant[][][]() []\T1/ptm/m/n/10 meth-ods
[2484]
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[][][]\T1/pcr/m/n/10 sparseMatrix[][][][]\T1/ptm/m/n/10 , and its ref-er-ences,
 such as [][][]\T1/pcr/m/n/10 xtabs[][][](*, sparse=TRUE)[]\T1/ptm/m/n/10 , or
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr.Q}) ha
s been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11282 \aliasA{qr.Q}{sparseQR-class}{qr.Q}
                                            [2485] [2486]
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[]\T1/pcr/m/n/10 signature(a = "sparseQR", b = "ANY")[]\T1/ptm/m/n/10 : For []\
T1/pcr/m/n/10 solve(a,b)[]\T1/ptm/m/n/10 , sim-ply uses
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 [] \T1/pcr/m/n/9 qc  <- qr.coef  (qrm, y); qc. <- qr.coef  (qrm, y.) # 2nd fai
led in Matrix <= 1.1-0[] 
[2487]
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[]\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case
 a
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[]\T1/ptm/m/n/10 Sparse Vec-tor Classes: The vir-tual mother class []\T1/pcr/m/
n/10 "sparseVector" []\T1/ptm/m/n/10 has the five ac-
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\T1/ptm/m/n/10 tual daugh-ter classes []\T1/pcr/m/n/10 "dsparseVector"[]\T1/ptm
/m/n/10 , []\T1/pcr/m/n/10 "isparseVector"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "
lsparseVector"[]\T1/ptm/m/n/10 ,
[2488]
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[]\T1/pcr/m/n/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m/
n/10 co-erces sparse
[2489]
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[]\T1/pcr/m/n/10 (x = "nsparseVector")[]\T1/ptm/m/n/10 : re-turn [][][]\T1/pcr/
m/n/10 logical[][][] []\T1/ptm/m/n/10 or
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[][][]\T1/pcr/m/n/10 sparseVector[][][]() []\T1/ptm/m/n/10 for friendly con-str
uc-tion of sparse vec-tors (apart from []\T1/pcr/m/n/10 as(*,
[2490] [2491]
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[][][]\T1/pcr/m/n/10 Matrix[][][](*, sparse=TRUE) []\T1/ptm/m/n/10 for the more
 usual con-struc-tor of such ma-tri-ces. Then,
[2492] [2493]
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\T1/ptm/m/n/10 Classes [][][]\T1/pcr/m/n/10 triangularMatrix[][][][]\T1/ptm/m/n
/10 , and, e.g., [][][]\T1/pcr/m/n/10 dsyMatrix[][][] []\T1/ptm/m/n/10 for nu-m
eric \T1/ptm/m/it/10 dense \T1/ptm/m/n/10 ma-tri-ces, or
Underfull \hbox (badness 2057) in paragraph at lines 11999--12001
[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
[2494] [2495]
Underfull \hbox (badness 6641) in paragraph at lines 12086--12089
[]\T1/ptm/m/n/10 Currently, [][][]\T1/pcr/m/n/10 Schur[][][][]\T1/ptm/m/n/10 , 
[][][]\T1/pcr/m/n/10 isSymmetric[][][] []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 as
() []\T1/ptm/m/n/10 (i.e. [][][]\T1/pcr/m/n/10 coerce[][][][]\T1/ptm/m/n/10 ) h
ave meth-ods with
Underfull \hbox (badness 5133) in paragraph at lines 12131--12135
[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 "TsparseMatrix" []\T1/ptm/m/n/10 class is
 the vir-tual class of all sparse ma-tri-ces coded in
Underfull \hbox (badness 2818) in paragraph at lines 12131--12135
\T1/ptm/m/n/10 triplet form. Since it is a vir-tual class, no ob-jects may be c
re-ated from it. See
[2496] [2497]
Underfull \hbox (badness 7649) in paragraph at lines 12238--12240
[]\T1/ptm/m/n/10 a sparse ma-trix stored in triplet form, i.e., in-her-it-ing f
rom class
[2498] [2499]
Underfull \hbox (badness 10000) in paragraph at lines 12356--12358
[]\T1/ptm/m/n/10 typically a []\T1/pcr/m/n/10 "packedMatrix"[]\T1/ptm/m/n/10 , 
though
[2500]
Underfull \hbox (badness 1668) in paragraph at lines 12485--12488
[][][]\T1/pcr/m/n/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/pcr/m/n/10 unpac
k[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/pcr/m/n/10 "[][]pac
kedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes
[2501]
Underfull \hbox (badness 7362) in paragraph at lines 12536--12538
[]\T1/ptm/m/n/10 any \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject, co-er-ca-ble to a
 sparse ma-trix (i.e., of sub-class of
[2502]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 12574--12574
 []\T1/pcr/m/n/9 ## pointer vectors can be used, and the (i,x) slots are sorted
 if necessary:[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 12575--12575
 []\T1/pcr/m/n/9 m <- sparseMatrix(i = c(3,1, 3:2, 2:1), p= c(0:2, 4,4,6), x = 
1:6, dimnames = dn)[] 
[2503] [2504]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12729--12729
 []   \T1/pcr/m/n/9 sapply(rho, function(x) c(2* determinant(update(C1, nWC, 1/
x))$modulus))[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 12734--12734
 []   \T1/pcr/m/n/9 sapply(rho, function(x) c(2* determinant(update(C2, nWC, 1/
x))$modulus))[] 
[2505]
Underfull \hbox (badness 6910) in paragraph at lines 12940--12942
[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2506]
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12987.
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12987.
[2507]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13117--13117
 []\T1/pcr/m/n/9 L. <- L; L.[1:2,1] <- TRUE; L.@x[1:2] <- FALSE; L. # has "zero
s" to drop0()[] 
[2508]) (./boot-pkg.tex
Chapter 18.
[2509] [2510] [2511] [2512] [2513] [2514] [2515]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 532--532
 []\T1/pcr/m/n/10 boot(data, statistic, R, sim = "ordinary", stype = c("i", "f"
, "w"), 
[2516]
Underfull \hbox (badness 1325) in paragraph at lines 570--577
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sim-u-la-tion r
e-quired. Pos-si-ble
Underfull \hbox (badness 1275) in paragraph at lines 585--590
[]\T1/ptm/m/n/10 An in-te-ger vec-tor or fac-tor spec-i-fy-ing the strata for m
ulti-sample prob-
[2517] [2518] [2519]
Underfull \hbox (badness 1881) in paragraph at lines 826--828
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 6493) in paragraph at lines 853--857
[][][]\T1/pcr/m/n/10 boot.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 bo
ot.ci[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 censboot[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 empinf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 j
ack.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 tilt.boot[][][][]\T
1/ptm/m/n/10 ,
[2520]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 887--887
 []\T1/pcr/m/n/9 nuke.lm <- glm(log(cost) ~ date+log(cap)+ne+ct+log(cum.n)+pt, 
data = nuke)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [2521]
[2522] [2523]
Underfull \hbox (badness 1496) in paragraph at lines 1084--1093
[]\T1/ptm/m/n/10 If sup-plied, a value to be used as an es-ti-mate of the vari-
ance of the
Underfull \hbox (badness 2005) in paragraph at lines 1084--1093
\T1/ptm/m/n/10 statis-tic for the nor-mal ap-prox-i-ma-tion and stu-den-tized i
n-ter-vals. If it
Underfull \hbox (badness 2343) in paragraph at lines 1084--1093
\T1/ptm/m/n/10 is not sup-plied and []\T1/pcr/m/n/10 length(index) []\T1/ptm/m/
n/10 is 2 then []\T1/pcr/m/n/10 var.t0 []\T1/ptm/m/n/10 de-faults to
Underfull \hbox (badness 2150) in paragraph at lines 1105--1111
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2524] [2525] [2526] [2527]
Underfull \hbox (badness 1571) in paragraph at lines 1445--1447
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2528] [2529] [2530] [2531] [2532]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1738--1738
 []\T1/pcr/m/n/10 censboot(data, statistic, R, F.surv, G.surv, strata = matrix(
1,n,2), 
[2533] [2534] [2535]
Underfull \vbox (badness 10000) has occurred while \output is active [2536]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 2013--2013
 []\T1/pcr/m/n/9 mel.cox <- coxph(Surv(time, status == 1) ~ ns(thickness, df=4)
 + strata(ulcer),[] 
[2537]
Underfull \hbox (badness 6268) in paragraph at lines 2084--2086
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2538] [2539] [2540]
Underfull \hbox (badness 1565) in paragraph at lines 2338--2343
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2541]
Underfull \hbox (badness 4595) in paragraph at lines 2363--2368
\T1/ptm/m/n/10 are passed un-changed ev-ery time []\T1/pcr/m/n/10 boot.out$stat
istic []\T1/ptm/m/n/10 is called.
Underfull \hbox (badness 1881) in paragraph at lines 2432--2434
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
Underfull \hbox (badness 2057) in paragraph at lines 2440--2441
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 empinf[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 k3.linear[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 linear.approx[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
saddle.distn[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.spline[][][][]
\T1/ptm/m/n/10 ,
[2542] [2543]
Underfull \hbox (badness 1077) in paragraph at lines 2536--2540
[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/pcr/m
/n/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/pcr/m/n/10 n []\T1/ptm/m/n/1
0 is the sam-ple
Underfull \hbox (badness 1112) in paragraph at lines 2536--2540
\T1/ptm/m/n/10 size, if []\T1/pcr/m/n/10 unbiased []\T1/ptm/m/n/10 is []\T1/pcr
/m/n/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/pcr/m/n/10 1/n []\T
1/ptm/m/n/10 is used. This is mul-ti-plied by
[2544] [2545] [2546] [2547] [2548]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2895--2895
 []\T1/pcr/m/n/10 EEF.profile(y, tmin = min(y) + 0.1, tmax = max(y) - 0.1, n.t 
= 25, 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 2897--2897
 []\T1/pcr/m/n/10 EL.profile(y, tmin  =  min(y) + 0.1, tmax = max(y) - 0.1, n.t
  =  25,[] 
[2549] [2550] [2551]
Underfull \hbox (badness 3861) in paragraph at lines 3105--3108
[][][]\T1/pcr/m/n/10 boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.arr
ay[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 boot.ci[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 control[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 jack
.after.boot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 linear.approx[][][][]\
T1/ptm/m/n/10 ,
[2552]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 3158--3158
 []\T1/pcr/m/n/10 envelope(boot.out = NULL, mat = NULL, level = 0.95, index = 1
:ncol(mat)) 
[2553] [2554] [2555]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 3378--3378
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
[2556] [2557] [2558] [2559] [2560] [2561] [2562]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3838--3838
 []             \T1/pcr/m/n/10 t = boot.out$t[, index], w = NULL, def = TRUE, q
 = NULL)[] 
[2563] [2564]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3977--3977
 []\T1/pcr/m/n/9 grav.p <- imp.prob(grav.tilt.boot, w = grav.w, index = 3, t0 =
 grav.z0[3])[] 
[2565] [2566] [2567] [2568]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4259--4259
 []\T1/pcr/m/n/9 #  To draw the jackknife-after-bootstrap plot for the head siz
e data as in 
[2569] [2570]
Underfull \hbox (badness 10000) in paragraph at lines 4362--4364
[]\T1/ptm/m/n/10 The in-dex of the vari-able of in-ter-est within the out-put o
f
Underfull \hbox (badness 1430) in paragraph at lines 4371--4375
\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is sup-plied but nei-the
r []\T1/pcr/m/n/10 t []\T1/ptm/m/n/10 nor []\T1/pcr/m/n/10 L []\T1/ptm/m/n/10 a
re sup-plied then []\T1/pcr/m/n/10 t0 []\T1/ptm/m/n/10 is set to
[2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579]
Underfull \hbox (badness 3000) in paragraph at lines 4959--4962
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2580] [2581] [2582] [2583]
Underfull \hbox (badness 2293) in paragraph at lines 5238--5241
[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5238--5241
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2584]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 5317--5317
 []\T1/pcr/m/n/9 grav.boot <- boot(grav1, grav.fun, R = 499, stype = "w", strat
a = grav1[, 2])[] 
[2585] [2586] [2587] [2588] [2589] [2590] [2591] [2592]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5866--5866
 []\T1/pcr/m/n/9 city.sp1$spa[1] <- jacobian(city, 1.25, city.sp1$zeta.hat) * c
ity.sp1$spa[1][] 
[2593]
Underfull \hbox (badness 1127) in paragraph at lines 5988--6006
[]\T1/ptm/m/n/10 etc. un-til a point is found with a cdf ap-prox-i-ma-tion less
 than []\T1/pcr/m/n/10 min(alpha)/10[]\T1/ptm/m/n/10 , then
[2594]
Underfull \hbox (badness 2837) in paragraph at lines 6021--6024
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/pcr/m/n/10 "s
addle.distn"[]\T1/ptm/m/n/10 . See the help file for
[2595] [2596] [2597] [2598]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6306--6306
 []\T1/pcr/m/n/9 # This example is taken from Exercise 7.5 of Gill, Murray and 
Wright (1991). 
[2599] [2600]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 6495--6495
 []\T1/pcr/m/n/9 # Example 9.8 of Davison and Hinkley (1997) requires tilting t
he resampling 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6497--6497
 []\T1/pcr/m/n/9 # value of the test statistic 1.84.  In the book exponential t
ilting was used[] 
[2601] [2602] [2603]
Underfull \hbox (badness 1596) in paragraph at lines 6742--6746
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2604] [2605]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 6902--6902
 []                        \T1/pcr/m/n/9 stype = "i", sim = "balanced", alpha =
 c(0.05, 0.95),[] 
[2606] [2607] [2608] [2609] [2610] [2611] [2612] [2613]) (./class-pkg.tex
[2614]
Chapter 19.
[2615] [2616] [2617] [2618] [2619] [2620] [2621] [2622] [2623] [2624] [2625]
[2626] [2627] [2628] [2629] [2630]) (./cluster-pkg.tex
Chapter 20.
[2631] [2632] [2633]
Overfull \hbox (42.18039pt too wide) in paragraph at lines 253--253
 []  \T1/pcr/m/n/9 all.equal(a.wgt [iC], agnes(d.vr, method="flexible", par.met
hod = 0.5)[iC])   ,[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 254--254
 []  \T1/pcr/m/n/9 all.equal(a.sing[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, -.5))[iC]),[] 
Overfull \hbox (63.78036pt too wide) in paragraph at lines 255--255
 []  \T1/pcr/m/n/9 all.equal(a.comp[iC], agnes(d.vr, method="flex", par.method=
 c(.5,.5,0, +.5))[iC]))[] 
[2634] [2635]
Underfull \vbox (badness 10000) has occurred while \output is active [2636]
[2637]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 519--519
 []           \T1/pcr/m/n/10 col = c(2, 0), border = 0, axes = TRUE, frame.plot
 = axes,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 523--523
 []           \T1/pcr/m/n/10 yaxRight = fromLeft, y.mar = 2.4 + max.strlen/2.5,
 ...)[] 
[2638] [2639]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 638--638
 []      \T1/pcr/m/n/10 keep.data = medoids.x, rngR = FALSE, pamLike = FALSE, c
orrect.d = TRUE)[] 
[2640]
Underfull \hbox (badness 3078) in paragraph at lines 691--694
[]\T1/ptm/m/n/10 Setting this to []\T1/pcr/m/n/10 FALSE []\T1/ptm/m/n/10 saves 
mem-ory (and hence time), but dis-ables
[2641] [2642]
Underfull \hbox (badness 2941) in paragraph at lines 791--794
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 clara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\
T1/ptm/m/n/10 ,
[2643]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 834--834
 []\T1/pcr/m/n/9 ## those that are not always in same cluster (5 out of 3000 fo
r this seed):[] 
Underfull \hbox (badness 10000) in paragraph at lines 881--883
[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2644]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 946--946
 []     \T1/pcr/m/n/10 arrowArgs = list(col="red3", length=1/16, angle=90, code
=3), ...)[] 
[2645]
Underfull \hbox (badness 4872) in paragraph at lines 992--994
[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
Underfull \hbox (badness 1342) in paragraph at lines 1006--1010
[]\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in
 2012,
[2646] [2647]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1121--1121
 []        \T1/pcr/m/n/9 sapply(mets, function(M) maxSE(fk, sk, method = M, SE.
factor = SEf)))[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 1138--1138
 []\T1/pcr/m/n/9 ## You can manually set it before running this :    doExtras <
- TRUE  # or  FALSE[] 
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Overfull \hbox (20.58041pt too wide) in paragraph at lines 1176--1176
 []\T1/pcr/m/n/9 plot(gsP.Z, main = "clusGap(<iid_rnorm_p=3>)  ==> k = 1  clust
er is optimal")[] 
Underfull \hbox (badness 4144) in paragraph at lines 1208--1212
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 nor a []\T1/pcr/m/n/10 data []\T1/ptm/m/n/10 
com-po-nent, e.g., for
[2649]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1284--1284
 []          \T1/pcr/m/n/10 col.clus = if(color) c(2, 4, 6, 3) else 5, cex = 1,
 cex.txt = cex,[] 
Overfull \hbox (72.78088pt too wide) in paragraph at lines 1290--1290
 []             \T1/pcr/m/n/10 round(100 * var.dec, digits = 2), "% of the poin
t variability."),[] 
[2650] [2651] [2652]
Underfull \hbox (badness 10000) in paragraph at lines 1477--1480
Underfull \hbox (badness 10000) in paragraph at lines 1494--1498
[][][]\T1/pcr/m/n/10 princomp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cmds
cale[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 daisy[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cov.mve[][][
][]\T1/ptm/m/n/10 ,
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1518--1518
 []\T1/pcr/m/n/9 clusplot(pamv, col.p = votes.clus, labels = 4)# color points a
nd label ellipses[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1528--1528
 []  \T1/pcr/m/n/9 clusplot(votes.diss, votes.clus, diss = TRUE, labels = 5)# i
dent. only points[] 
[2653]
Underfull \hbox (badness 5741) in paragraph at lines 1568--1571
[]\T1/pcr/m/n/10 coefHier() []\T1/ptm/m/n/10 di-rectly in-ter-faces to the un-d
er-ly-ing C code, and ``proves'' that \T1/ptm/m/it/10 only
[2654]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1637--1637
 []      \T1/pcr/m/n/10 warnBin = warnType, warnAsym = warnType, warnConst = wa
rnType,[] 
[2655]
Underfull \hbox (badness 1552) in paragraph at lines 1686--1688
[]\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/pcr/m/n
/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , se
e
Underfull \hbox (badness 1629) in paragraph at lines 1699--1703
[]\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault 
\T1/ptm/m/n/10 for all nu-meric
Underfull \hbox (badness 3746) in paragraph at lines 1699--1703
\T1/ptm/m/n/10 (incl []\T1/pcr/m/n/10 integer[]\T1/ptm/m/n/10 ) columns of []\T
1/pcr/m/n/10 x[]\T1/ptm/m/n/10 , aka []\T1/pcr/m/n/10 "I" []\T1/ptm/m/n/10 in r
e-sult []\T1/pcr/m/n/10 Types[]\T1/ptm/m/n/10 , see
[2656]
Underfull \hbox (badness 1540) in paragraph at lines 1775--1783
\T1/ptm/m/n/10 In other words, $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 is a weigh
ted mean of $\OML/cmm/m/it/10 d[]$ \T1/ptm/m/n/10 with weights $\OML/cmm/m/it/1
0 w[]^^N[]$\T1/ptm/m/n/10 , where $\OML/cmm/m/it/10 w[]$[]\T1/pcr/m/n/10 =
[2657]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1867--1867
 []\T1/pcr/m/n/9 summary(dfl2 <- daisy(flower, type = list(asymm = c(1, 3), ord
ratio = 7)))[] 
Overfull \hbox (42.78088pt too wide) in paragraph at lines 1886--1886
 []\T1/pcr/m/n/10 diana(x, diss = inherits(x, "dist"), metric = "euclidean", st
and = FALSE, 
[2658] [2659] [2660] [2661] [2662]
Underfull \hbox (badness 10000) in paragraph at lines 2207--2210
Underfull \hbox (badness 3179) in paragraph at lines 2221--2227
[][][]\T1/pcr/m/n/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also the
 [][][]\T1/pcr/m/n/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/pcr/m/n/1
0 ellipsoid []\T1/ptm/m/n/10 ob-jects.
[2663] [2664]
Underfull \hbox (badness 10000) in paragraph at lines 2379--2382
[][][]\T1/pcr/m/n/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-en
ces; [][][]\T1/pcr/m/n/10 fanny.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2665]
Underfull \hbox (badness 1292) in paragraph at lines 2447--2450
[]\T1/ptm/m/n/10 named vec-tor with []\T1/pcr/m/n/10 iterations[]\T1/ptm/m/n/10
 , the num-ber of it-er-a-tions needed and
[2666]
Underfull \hbox (badness 6675) in paragraph at lines 2456--2458
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
Underfull \hbox (badness 10000) in paragraph at lines 2479--2482
[][][]\T1/pcr/m/n/10 fanny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.f
anny[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 dissimilarity.object[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 ,
[2667] [2668]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 2608--2608
 []\T1/pcr/m/n/10 medoids(x, clustering, diss = inherits(x, "dist"), USE.NAMES 
= FALSE, ...) 
[2669]
Overfull \hbox (69.18036pt too wide) in paragraph at lines 2655--2655
 []  \T1/pcr/m/n/9 stopifnot(length(cl.k) == nrow(votes.repub), 1 <= cl.k, cl.k
 <= k, table(cl.k) >= 2)[] 
[2670]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 2760--2760
 []\T1/pcr/m/n/9 ## One place to see if/how error messages are *translated* (to
 \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 de\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 / \TS1/pcr/m/n/
9 '\T1/pcr/m/n/9 pl\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ):[] 
[2671]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 2839--2839
 []    \T1/pcr/m/n/10 variant = c("original", "o_1", "o_2", "f_3", "f_4", "f_5"
, "faster"),[] 
[2672] [2673] [2674]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3068--3068
 []\T1/pcr/m/n/9 ## no _build_ *and* no _swap_ phase: just cluster all obs. aro
und (1, 16):[] 
[2675] [2676]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 3171--3171
 []\T1/pcr/m/n/9 axis(1, k.best, paste("best",k.best,sep="\n"), col = "red", co
l.axis = "red")[] 
[2677] [2678] [2679]
Overfull \hbox (78.78088pt too wide) in paragraph at lines 3367--3367
 []           \T1/pcr/m/n/10 sub = paste("Agglomerative Coefficient = ",round(x
$ac, digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3368--3368
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2680]
Underfull \hbox (badness 10000) in paragraph at lines 3435--3438
[]\T1/ptm/m/n/10 For the den-dro-gram, more flex-i-bil-ity than via []\T1/pcr/m
/n/10 pltree() []\T1/ptm/m/n/10 is pro-vided by []\T1/pcr/m/n/10 dg <-
[2681]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3485--3485
 []           \T1/pcr/m/n/10 sub = paste("Divisive Coefficient = ", round(x$dc,
 digits = 2)),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 3486--3486
 []           \T1/pcr/m/n/10 adj = 0, nmax.lab = 35, max.strlen = 5, xax.pretty
 = TRUE, ...)[] 
[2682] [2683] [2684]
Underfull \hbox (badness 10000) in paragraph at lines 3671--3674
[]\T1/ptm/m/n/10 when []\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 does not have a []\T1
/pcr/m/n/10 diss []\T1/ptm/m/n/10 com-po-nent as for [][][]\T1/pcr/m/n/10 pam[]
[][](*,
Underfull \hbox (badness 1448) in paragraph at lines 3671--3674
\T1/pcr/m/n/10 keep.diss=FALSE)[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 dist []\T1/p
tm/m/n/10 must be the dis-sim-i-lar-ity if a clus-plot is
[2685]
Underfull \hbox (badness 10000) in paragraph at lines 3734--3739
[][][]\T1/pcr/m/n/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 clusplot.de
fault[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pam[][][][]\T1/ptm/m/n/10 ,
[2686]
Underfull \hbox (badness 1748) in paragraph at lines 3796--3801
\T1/ptm/m/n/10 dis-patches to [][][]\T1/pcr/m/n/10 plot.hclust[][][](..)[]\T1/p
tm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/pcr/m/n/10 xx 
<-
Underfull \hbox (badness 6268) in paragraph at lines 3808--3811
[][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 agnes.o
bject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 diana[][][][]\T1/ptm/m/n/10 
, [][][]\T1/pcr/m/n/10 diana.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/1
0 hclust[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 par[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 plot.agnes[][][][]\T1/ptm/m/n/10 ,
[2687] [2688] [2689]
Underfull \hbox (badness 10000) in paragraph at lines 3993--3996
[][][]\T1/pcr/m/n/10 summary.agnes[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 agnes[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ag
nes.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4024--4027
[][][]\T1/pcr/m/n/10 summary.clara[][][] []\T1/ptm/m/n/10 pro-duc-ing more out-
put; [][][]\T1/pcr/m/n/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cl
ara.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print[][][][]\T1/ptm/m/
n/10 ,
[2690]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 4077--4077
 []      \T1/pcr/m/n/10 digits = getOption("digits"), justify = "none", right =
 TRUE, ...)[] 
[2691]
Underfull \hbox (badness 2035) in paragraph at lines 4088--4090
[]\T1/ptm/m/n/10 a []\T1/pcr/m/n/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a
 []\T1/pcr/m/n/10 summary.dissimilarity []\T1/ptm/m/n/10 one for
[2692] [2693] [2694]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 4281--4281
 []     \T1/pcr/m/n/10 main = NULL, sub = NULL, xlab = expression("Silhouette w
idth "* s[i]),[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 4283--4283
 []     \T1/pcr/m/n/10 cex.names = par("cex.axis"), do.n.k = TRUE, do.clus.stat
 = TRUE, ...)[] 
[2695] [2696]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 4426--4426
 []\T1/pcr/m/n/9 plot(si, col = c("red", "green", "blue", "purple"))# with clus
ter-wise coloring[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4435--4435
 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4437--4437
 []      \T1/pcr/m/n/9 outer = TRUE, font = par("font.main"), cex = par("cex.ma
in")); frame()[] 
Overfull \hbox (42.18039pt too wide) in paragraph at lines 4440--4440
 []\T1/pcr/m/n/9 c6 <- c("tomato", "forest green", "dark blue", "purple2", "gol
denrod4", "gray20")[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 4442--4442
 []   \T1/pcr/m/n/9 plot(silhouette(pam(ruspini, k=k)), main = paste("k = ",k),
 do.n.k=FALSE,[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 4449--4449
 []\T1/pcr/m/n/9 str(xc1k <- xclara[ sample(nrow(xclara), size = 1000) ,]) # ro
wnames == indices[] 
[2697] [2698] [2699] [2700] [2701] [2702] [2703]
Underfull \hbox (badness 10000) in paragraph at lines 4823--4829
[]\T1/ptm/m/n/10 Our ver-sion of the []\T1/pcr/m/n/10 xclara []\T1/ptm/m/n/10 i
s slightly more rounded than the one from
Underfull \hbox (badness 10000) in paragraph at lines 4839--4841
[]\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file 
`\T1/pcr/m/n/10 xclara.dat\T1/ptm/m/n/10 ' in side
Overfull \hbox (52.98038pt too wide) in paragraph at lines 4852--4852
 []\T1/pcr/m/n/9 ## Visualization: Assuming groups are defined as {1:1000}, {10
01:2000}, {2001:3000} 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 4854--4854
 []\T1/pcr/m/n/9 p.ID <- c(78, 1411, 2535) ## PAM\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 
s medoid indices  == pam(xclara, 3)$id.med[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4864--4864
 [] \T1/pcr/m/n/9 ## We see 3 + 2 + 2 = 7  clear "outlier"s  or "wrong group" o
bservations:[] 
[2704]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 4868--4868
 [] \T1/pcr/m/n/9 ## Apart from these, what are the robust ranges of indices? -
- Robust range:[] 
[2705]) (./codetools-pkg.tex [2706]
Chapter 21.
Overfull \hbox (24.78088pt too wide) in paragraph at lines 16--16
 []           \T1/pcr/m/n/10 suppressParamUnused = !all, suppressFundefMismatch
 = FALSE,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 17--17
 []           \T1/pcr/m/n/10 suppressLocalUnused = FALSE, suppressNoLocalFun = 
!all,[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 18--18
 []           \T1/pcr/m/n/10 skipWith = FALSE, suppressUndefined = dfltSuppress
Undefined,[] 
[2707]
Underfull \hbox (badness 10000) in paragraph at lines 65--70
[]\T1/pcr/m/n/10 checkUsageEnv []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 checkUsage
Package []\T1/ptm/m/n/10 are con-ve-nience func-tions that ap-ply
[2708]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 118--118
 []\T1/pcr/m/n/10 makeConstantFolder(..., leaf, handler, call, exit, isLocal, f
oldable,[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 121--121
 []\T1/pcr/m/n/10 makeUsageCollector(fun, ..., name, enterLocal, enterGlobal, e
nterInternal,[] 
[2709] [2710] [2711]) (./foreign-pkg.tex [2712]
Chapter 22.
Underfull \hbox (badness 10000) in paragraph at lines 33--37
[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
Underfull \hbox (badness 10000) in paragraph at lines 33--37
\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][]$\T1/p
cr/m/n/10 https : / / support .
Underfull \hbox (badness 10000) in paragraph at lines 33--37
\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
Overfull \hbox (74.28088pt too wide) in paragraph at lines 33--37
\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2713]
Underfull \hbox (badness 1231) in paragraph at lines 67--70
[]\T1/ptm/m/n/10 a char-ac-ter string with the name of the ARFF file to read fr
om, or a
[2714] [2715]
Underfull \hbox (badness 3601) in paragraph at lines 237--245
[]\T1/ptm/m/n/10 A data frame with at-tributes. These will in-clude []\T1/pcr/m
/n/10 "datalabel"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "time.stamp"[]\T1/ptm/m/n/
10 ,
[2716]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 295--295
 []\T1/pcr/m/n/10 read.epiinfo(file, read.deleted = FALSE, guess.broken.dates =
 FALSE, 
[2717] [2718] [2719]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 461--461
 []          \T1/pcr/m/n/10 trim_values = TRUE, reencode = NA, use.missings = t
o.data.frame,[] 
[2720]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 462--462
 []          \T1/pcr/m/n/10 sub = ".", add.undeclared.levels = c("sort", "appen
d", "no"),[] 
Underfull \hbox (badness 2846) in paragraph at lines 505--514
[]\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif-
fer-ent lev-
Underfull \hbox (badness 3746) in paragraph at lines 505--514
\T1/ptm/m/n/10 els. For []\T1/pcr/m/n/10 "append" []\T1/ptm/m/n/10 (the de-faul
t), the first orig-i-nal value la-bel is
Underfull \hbox (badness 2269) in paragraph at lines 505--514
\T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/p
cr/m/n/10 paste0(label,
Underfull \hbox (badness 10000) in paragraph at lines 515--518
[]\T1/ptm/m/n/10 character: the in-fix used for la-bels of fac-tor lev-els with
 du-
Underfull \hbox (badness 10000) in paragraph at lines 515--518
\T1/ptm/m/n/10 pli-cated value la-bels in SPSS (de-fault []\T1/pcr/m/n/10 "_dup
licated_"[]\T1/ptm/m/n/10 ) if
[2721]
Underfull \hbox (badness 10000) in paragraph at lines 549--557
[]\T1/ptm/m/n/10 URL [][]$\T1/pcr/m/n/10 https : / / learn . microsoft . com / 
en-[]us / windows / win32 / intl /
Underfull \hbox (badness 7613) in paragraph at lines 567--573
[]\T1/ptm/m/n/10 There may be at-tributes []\T1/pcr/m/n/10 "label.table" []\T1/
ptm/m/n/10 and []\T1/pcr/m/n/10 "variable.labels"[]\T1/ptm/m/n/10 . At-tribute
[2722]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 622--622
 []\T1/pcr/m/n/9 ### hence may need some special treatment with appropriate arg
ument settings.[] 
Overfull \hbox (112.38031pt too wide) in paragraph at lines 623--623
 []\T1/pcr/m/n/9 ### Expect lots of warnings as value labels (corresponding to 
R factor labels) are uncomplete,[] 
[2723]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 656--656
 []\T1/pcr/m/n/9 ## Long Strings (>255 chars) are imported in consecutive separ
ate variables[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 660--660
 []\T1/pcr/m/n/9 cat.long.string <- function(x, w=70) cat(paste(strwrap(x, widt
h=w), "\n"))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 667--667
 []\T1/pcr/m/n/9 long.string <- apply(x[,c("string_500", "STRIN0")], 1, paste, 
collapse="")[] 
[2724] [2725]
Underfull \hbox (badness 10000) in paragraph at lines 811--812
Overfull \hbox (4.38043pt too wide) in paragraph at lines 821--821
 []\T1/pcr/m/n/9 iris.s <- read.systat(system.file("files/Iris.syd", package="f
oreign")[1])[] 
[2726]
Underfull \hbox (badness 10000) in paragraph at lines 868--872
[]\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o
ut of a Data
Underfull \hbox (badness 10000) in paragraph at lines 868--872
\T1/ptm/m/n/10 Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][]$\T1/p
cr/m/n/10 https : / / support .
Underfull \hbox (badness 10000) in paragraph at lines 868--872
\T1/pcr/m/n/10 sas . com / content / dam / SAS / support / en / technical-[]pap
ers /
Overfull \hbox (74.28088pt too wide) in paragraph at lines 868--872
\T1/pcr/m/n/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[]s
et-[]in-[]sas-[]transport-[]xport-[]format .
[2727]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 899--899
 []  \T1/pcr/m/n/10 data.restore(file, print = FALSE, verbose = FALSE, env = .G
lobalEnv) 
[2728]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 963--963
 []\T1/pcr/m/n/10 write.arff(x, file, eol = "\n", relation = deparse(substitute
(x))) 
[2729] [2730]
Underfull \hbox (badness 10000) in paragraph at lines 1075--1076
[][][]$\T1/pcr/m/n/10 https : / / www . clicketyclick . dk / databases / xbase 
/ format / data _ types .
Overfull \hbox (24.78088pt too wide) in paragraph at lines 1111--1111
 []          \T1/pcr/m/n/10 convert.factors = c("labels", "string", "numeric", 
"codes"))[] 
[2731] [2732]
Underfull \hbox (badness 10000) in paragraph at lines 1268--1274
[]\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/pcr/m/n/10 foreig
n:::writeForeignStata[]\T1/ptm/m/n/10 ,
[2733]
Underfull \hbox (badness 2088) in paragraph at lines 1294--1297
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 package="SPSS"[]\T1/ptm/m/n/10 , as a sid
e ef-fect, the dec-i-mal in-di-ca-tor is al-ways set by []\T1/pcr/m/n/10 SET
[2734]) (./lattice-pkg.tex
Chapter 23.
[2735]
Underfull \hbox (badness 2073) in paragraph at lines 117--121
\T1/ptm/m/n/10 pro-vide a holis-tic in-tro-duc-tion to the Trel-lis paradigm: [
][]$\T1/pcr/m/n/10 http : / / web . archive . org /
Underfull \hbox (badness 10000) in paragraph at lines 117--121
\T1/pcr/m/n/10 web / 20081020164041 / http : / / cm . bell-[]labs . com / cm / 
ms / departments / sia /
[2736] [2737]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 286--286
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 290--290
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.xyplot"),[] 
[2738]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 298--298
 []        \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defaul
t.dotplot"),[] 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 305--305
 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.barchart"),[] 
Overfull \hbox (66.78088pt too wide) in paragraph at lines 313--313
 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.stripplot"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 334--334
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 338--338
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.bwplot"),[] 
[2739] [2740] [2741] [2742]
Underfull \hbox (badness 1221) in paragraph at lines 652--655
[]\T1/ptm/m/n/10 A log-i-cal, or a list con-tain-ing com-po-nents to be used as
 ar-gu-ments to
[2743] [2744] [2745] [2746]
Underfull \hbox (badness 2005) in paragraph at lines 990--1002
[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the un-used lev-els of 
fac-tors will be
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\T1/ptm/m/n/10 some-times ap-pro-pri-ate to sup-press drop-ping to pre-serve a 
use-ful lay-out.
[2747]
Underfull \hbox (badness 1661) in paragraph at lines 1103--1109
[]\T1/pcr/m/n/10 x []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 sho
uld be num-bers be-tween 0 and 1, giv-ing co-or-di-nates
[2748] [2749]
Underfull \hbox (badness 1097) in paragraph at lines 1229--1231
[]\T1/ptm/m/n/10 Logical flag, whether leg-end should have a
Underfull \hbox (badness 1917) in paragraph at lines 1243--1244
[]\T1/ptm/m/n/10 Space be-tween col-umn blocks, in ad-di-tion to
[2750] [2751] [2752]
Underfull \hbox (badness 1540) in paragraph at lines 1483--1489
[]\T1/ptm/m/n/10 A list con-tain-ing pos-si-ble ar-gu-ments to [][][]\T1/pcr/m/
n/10 plot.trellis[][][][]\T1/ptm/m/n/10 ,
[2753]
Underfull \hbox (badness 10000) in paragraph at lines 1570--1587
[][][]\T1/pcr/m/n/10 panel.dotplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.superpose[]
[][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 panel.loess[][][][]\T1/ptm/m/n/10 ,
[2754]
Overfull \hbox (36.7804pt too wide) in paragraph at lines 1658--1658
 []                  \T1/pcr/m/n/9 text = list(lab = as.character(unique(Orchar
dSprays$rowpos))),[] 
[2755]
Underfull \hbox (badness 2012) in paragraph at lines 1712--1714
[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/pcr/m/n/10 xyplot[]
[][][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1742--1746
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
[2756]
Underfull \hbox (badness 10000) in paragraph at lines 1759--1762
[]\T1/ptm/m/n/10 style set-tings be-yond the stan-dard []\T1/pcr/m/n/10 col[]\T
1/ptm/m/n/10 , []\T1/pcr/m/n/10 lty[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 lwd[]\T1
/ptm/m/n/10 , etc; see
Underfull \hbox (badness 10000) in paragraph at lines 1812--1814
[]\T1/ptm/m/n/10 Gabor Grothendieck, Achim Zeileis, Deep-ayan Sarkar and Fe-lix
 An-drews
[2757] [2758] [2759] [2760]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2045--2045
 []            \T1/pcr/m/n/10 auto.key = lattice.getOption("default.args")$auto
.key,[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2058--2058
 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.densitypl
ot"),[] 
[2761]
Underfull \hbox (badness 10000) in paragraph at lines 2128--2131
[]\T1/ptm/m/n/10 When []\T1/pcr/m/n/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fie
d, the value of
Underfull \hbox (badness 1320) in paragraph at lines 2128--2131
[]\T1/pcr/m/n/10 lattice.getOption("histogram.breaks") []\T1/ptm/m/n/10 is firs
t checked. If
[2762] [2763] [2764]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 2332--2332
 []       \T1/pcr/m/n/10 drop.unused.levels = lattice.getOption("drop.unused.le
vels"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 2336--2336
 []       \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default
.qqmath"),[] 
[2765] [2766] [2767] [2768]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 2676--2676
 []          \T1/pcr/m/n/10 panel = if (useRaster) lattice.getOption("panel.lev
elplot.raster")[] 
[2769]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 2708--2708
 []                \T1/pcr/m/n/10 lattice.getOption("prepanel.default.contourpl
ot"),[] 
Underfull \vbox (badness 10000) has occurred while \output is active [2770]
Underfull \hbox (badness 2913) in paragraph at lines 2778--2783
[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
Underfull \hbox (badness 3058) in paragraph at lines 2778--2783
[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
[2771] [2772]
Underfull \hbox (badness 6758) in paragraph at lines 2906--2910
[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether the col-orkey should be
Underfull \hbox (badness 7576) in paragraph at lines 2906--2910
\T1/ptm/m/n/10 ren-dered as a raster im-age us-ing [][][]\T1/pcr/m/n/10 grid.ra
ster[][][][]\T1/ptm/m/n/10 . See also
Underfull \hbox (badness 10000) in paragraph at lines 2912--2914
[]\T1/ptm/m/n/10 Logical flag, passed to [][][]\T1/pcr/m/n/10 rasterGrob[][][] 
[]\T1/ptm/m/n/10 when
Underfull \hbox (badness 1609) in paragraph at lines 2964--2970
[]\T1/ptm/m/n/10 A log-i-cal flag in-di-cat-ing whether raster rep-re-sen-ta-ti
ons should be used,
Underfull \hbox (badness 2772) in paragraph at lines 2964--2970
\T1/ptm/m/n/10 both for the false color im-age and the color key (if present). 
Ef-
Underfull \hbox (badness 1400) in paragraph at lines 2964--2970
\T1/ptm/m/n/10 fec-tively, set-ting this to []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n
/10 changes the de-fault panel func-tion from
Underfull \hbox (badness 2486) in paragraph at lines 2988--2992
[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2773] [2774]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3091--3091
 []      \T1/pcr/m/n/10 xlim = if (is.factor(x)) levels(x) else range(x, finite
 = TRUE),[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3092--3092
 []      \T1/pcr/m/n/10 ylim = if (is.factor(y)) levels(y) else range(y, finite
 = TRUE),[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 3093--3093
 []      \T1/pcr/m/n/10 zlim = if (is.factor(z)) levels(z) else range(z, finite
 = TRUE),[] 
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3104--3104
 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
cloud"),[] 
[2775]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 3116--3116
 []          \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defa
ult.wireframe"),[] 
Underfull \hbox (badness 2913) in paragraph at lines 3174--3181
[]\T1/ptm/m/n/10 Optional vec-tors of val-ues that de-fine the grid when []\T1/
pcr/m/n/10 x []\T1/ptm/m/n/10 is a ma-trix.
Underfull \hbox (badness 3058) in paragraph at lines 3174--3181
[]\T1/pcr/m/n/10 row.values []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 column.values
 []\T1/ptm/m/n/10 must have the same lengths as
[2776] [2777] [2778] [2779]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.parallel}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3462 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                 [2780]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3504--3504
 []      \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.default.
splom"),[] 
Overfull \hbox (54.78088pt too wide) in paragraph at lines 3527--3527
 []         \T1/pcr/m/n/10 default.prepanel = lattice.getOption("prepanel.defau
lt.parallel"),[] 
[2781] [2782] [2783] [2784] [2785]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 3863--3863
 []\T1/pcr/m/n/10 oneway(formula, data, location=mean, spread=function(x) sqrt(
var(x))) 
[2786]
Underfull \hbox (badness 2277) in paragraph at lines 3949--3953
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings by
Underfull \hbox (badness 2435) in paragraph at lines 3949--3953
\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2787] [2788]
Overfull \hbox (120.78088pt too wide) in paragraph at lines 4046--4046
 []               \T1/pcr/m/n/10 symbol = palette.colors(palette = "Okabe-Ito")
[c(6, 2, 4, 7, 3, 5, 8)],[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 4048--4048
 []               \T1/pcr/m/n/10 region = hcl.colors(14, palette = "YlGnBu", re
v = TRUE),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 4055--4055
 []             \T1/pcr/m/n/10 reference = "gray90", bg = "transparent", fg = "
black",[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 4056--4056
 []             \T1/pcr/m/n/10 strip.bg = rep("gray95", 7), strip.fg = rep("gra
y70", 7),[] 
[2789] [2790]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 4199--4199
 []\T1/pcr/m/n/10 trellis.par.set(name, value, ..., theme, warn = TRUE, strict 
= FALSE) 
Underfull \hbox (badness 1173) in paragraph at lines 4208--4212
[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
Underfull \hbox (badness 3219) in paragraph at lines 4235--4237
[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
Underfull \hbox (badness 1728) in paragraph at lines 4252--4256
[]\T1/pcr/m/n/10 theme[]\T1/ptm/m/n/10 ). These are used to mod-ify the cur-ren
t set-tings (ob-tained by
[2791]
Underfull \hbox (badness 5161) in paragraph at lines 4317--4321
[]\T1/ptm/m/n/10 The ac-tual list of the com-po-nents in []\T1/pcr/m/n/10 trell
is.settings []\T1/ptm/m/n/10 has not been fi-nal-ized,
Underfull \hbox (badness 4913) in paragraph at lines 4317--4321
\T1/ptm/m/n/10 so I'm not at-tempt-ing to list them here. The cur-rent value ca
n be ob-tained by
[2792] [2793]
Underfull \hbox (badness 1067) in paragraph at lines 4435--4445
[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/pcr/m/n/10 col []\T1/ptm/m/n/
10 is used for com-po-nents []\T1/pcr/m/n/10 "plot.symbol"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4435--4445
[]\T1/pcr/m/n/10 "plot.line"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "plot.polygon"[
]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 1735) in paragraph at lines 4435--4445
[]\T1/pcr/m/n/10 "superpose.line"[]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 "super
pose.polygon"[]\T1/ptm/m/n/10 . []\T1/pcr/m/n/10 col.points
Underfull \hbox (badness 10000) in paragraph at lines 4435--4445
[]\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col[]\T1/ptm/m/n/10 , but is used 
only for []\T1/pcr/m/n/10 "plot.symbol" []\T1/ptm/m/n/10 and
Underfull \hbox (badness 5231) in paragraph at lines 4435--4445
[]\T1/pcr/m/n/10 "superpose.symbol"[]\T1/ptm/m/n/10 . Sim-i-larly, []\T1/pcr/m/
n/10 col.line []\T1/ptm/m/n/10 over-rides []\T1/pcr/m/n/10 col []\T1/ptm/m/n/10
 for
Underfull \hbox (badness 1701) in paragraph at lines 4460--4463
[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 pl
ot.symbol[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 plot.polygon[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4463--4465
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/pcr/m/n/10 
plot.polygon []\T1/ptm/m/n/10 and
[2794] [2795]
Underfull \hbox (badness 2932) in paragraph at lines 4606--4611
[]\T1/pcr/m/n/10 auto.key[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 aspect[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 between[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 grid[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 skip[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 strip[]\T1/
ptm/m/n/10 , []\T1/pcr/m/n/10 xscale.components[]\T1/ptm/m/n/10 ,
[2796] [2797] [2798] [2799]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4882--4882
 []\T1/pcr/m/n/9 p12 <- densityplot( ~ height | voice.part, data = singer, xlab
 = "Height")[] 
[2800] [2801] [2802]
Underfull \hbox (badness 10000) in paragraph at lines 5069--5072
[]\T1/ptm/m/n/10 An ob-ject of class []\T1/pcr/m/n/10 trellis[]\T1/ptm/m/n/10 ,
 by de-fault plot-ted by []\T1/pcr/m/n/10 print.trellis[]\T1/ptm/m/n/10 .
[2803]
Underfull \hbox (badness 1442) in paragraph at lines 5201--5204
[]\T1/pcr/m/n/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gle
s via rect-an-gles. []\T1/pcr/m/n/10 print.shingle []\T1/ptm/m/n/10 and
[2804] [2805] [2806] [2807] [2808] [2809]
Underfull \hbox (badness 3646) in paragraph at lines 5540--5543
[][][]\T1/pcr/m/n/10 Lattice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 draw.
key[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 trellis.par.get[][][][]\T1/ptm
/m/n/10 , and [][][]\T1/pcr/m/n/10 xyplot[][][][]\T1/ptm/m/n/10 , specif-i-call
y the en-try for
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 []              \T1/pcr/m/n/10 bg = trellis.par.get("strip.background")$col[wh
ich.given],[] 
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 []              \T1/pcr/m/n/10 fg = trellis.par.get("strip.shingle")$col[which
.given],[] 
[2810]
Underfull \hbox (badness 10000) in paragraph at lines 5659--5662
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 2103) in paragraph at lines 5659--5662
[]\T1/pcr/m/n/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on the
 left of pan-els us-ing
[2811]
Underfull \hbox (badness 1635) in paragraph at lines 5685--5690
[]\T1/pcr/m/n/10 strip.default []\T1/ptm/m/n/10 is called for its side-effect, 
which is to draw a strip ap-pro-pri-ate for
[2812]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5836--5836
 []\T1/pcr/m/n/10 panel.identify.qqmath(x, distribution, groups, subscripts, la
bels,[] 
[2813]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 5850--5850
 []\T1/pcr/m/n/10 panel.link.splom(threshold = 18, verbose = getOption("verbose
"), ...)[] 
Overfull \hbox (24.78088pt too wide) in paragraph at lines 5851--5851
 []\T1/pcr/m/n/10 panel.brush.splom(threshold = 18, verbose = getOption("verbos
e"), ...)[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 5854--5854
 []\T1/pcr/m/n/10 trellis.vpname(name = c("position", "split", "split.location"
, "toplevel",[] 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 5857--5857
 []                        \T1/pcr/m/n/10 "xlab", "ylab", "xlab.top", "ylab.rig
ht", "page"),[] 
Overfull \hbox (12.78088pt too wide) in paragraph at lines 5859--5859
 []               \T1/pcr/m/n/10 side = c("left", "top", "right", "bottom", "in
side"),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5865--5865
 []                 \T1/pcr/m/n/10 which.given = lattice.getStatus("current.whi
ch.given",[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5866--5866
 []                                                 \T1/pcr/m/n/10 prefix = pre
fix),[] 
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5867--5867
 []                 \T1/pcr/m/n/10 which.panel = lattice.getStatus("current.whi
ch.panel",[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 5868--5868
 []                                                 \T1/pcr/m/n/10 prefix = pre
fix),[] 
Overfull \hbox (6.78088pt too wide) in paragraph at lines 5869--5869
 []                 \T1/pcr/m/n/10 column = lattice.getStatus("current.focus.co
lumn",[] 
Underfull \hbox (badness 10000) in paragraph at lines 5885--5887
[]\T1/ptm/m/n/10 variables defin-ing the con-tents of the panel. In the case of
Underfull \hbox (badness 2376) in paragraph at lines 5896--5898
[]\T1/ptm/m/n/10 an op-tional vec-tor of la-bels as-so-ci-ated with each point.
 De-faults to
[2814] [2815]
Underfull \hbox (badness 2538) in paragraph at lines 6021--6025
\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 trellis.focus[]\T1/ptm/m/n/10 , the de-faul
t is []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 in in-ter-ac-tive mode, and
Underfull \hbox (badness 4205) in paragraph at lines 6032--6039
[]\T1/ptm/m/n/10 For []\T1/pcr/m/n/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , e
x-tra pa-ram-e-ters are passed on to
Underfull \hbox (badness 4792) in paragraph at lines 6032--6039
[]\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 trellis.switchFocus[]\T1/ptm/m/n/10 , the
se are used (in com-bi-na-tion with
[2816] [2817]
Underfull \hbox (badness 10000) in paragraph at lines 6185--6189
[][][]\T1/pcr/m/n/10 identify[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Latt
ice[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.trellis[][][][]\T1/ptm/m
/n/10 , [][][]\T1/pcr/m/n/10 trellis.currentLayout[][][][]\T1/ptm/m/n/10 ,
[2818] [2819]
Underfull \hbox (badness 4242) in paragraph at lines 6332--6337
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
[2820] [2821]
Underfull \hbox (badness 3601) in paragraph at lines 6448--6453
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/pcr/m/n/10 x []\T1/ptm/m
/n/10 for ev-ery level of []\T1/pcr/m/n/10 y []\T1/ptm/m/n/10 (or the other way
 round
Underfull \hbox (badness 2486) in paragraph at lines 6448--6453
\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 horizontal=FALSE[]\T1/ptm/m/n/10 ). By de-fa
ult, the ac-tual box-plot statis-tics are cal-cu-lated us-ing
[2822]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 6536--6536
 []             \T1/pcr/m/n/10 shade.colors.palette = trellis.par.get("shade.co
lors")$palette,[] 
[2823] [2824] [2825]
Underfull \hbox (badness 10000) in paragraph at lines 6735--6739
[]\T1/ptm/m/n/10 All three num-bers should be be-tween 0 and 1. The
Underfull \hbox (badness 10000) in paragraph at lines 6740--6742
[]\T1/ptm/m/n/10 numeric, be-tween 0 and 1, giv-ing a min-i-mum sat-u-ra-tion i
n
[2826]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6836--6836
 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Inferno"),[] 
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 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Dark Mint"),[] 
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 []          \T1/pcr/m/n/9 shade.colors.palette = makeShadePalette(hcl.colors(1
0, "Harmonic"),[] 
[2827] [2828] [2829] [2830] [2831] [2832]
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[]\T1/pcr/m/n/10 panel.levelplot.raster []\T1/ptm/m/n/10 is an al-ter-na-tive p
anel func-tion that uses the raster draw-
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\T1/ptm/m/n/10 can only ren-der data on an eq-ui-s-paced grid), but can be more
 ef-fi-cient. When us-ing
[2833]
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 []                 \T1/pcr/m/n/10 varname = NULL, limits, at = NULL, labels = 
NULL,[] 
[2834]
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[]\T1/ptm/m/n/10 The panel func-tion used for the di-ag-o-nals. See ar-gu-ments
 to
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[]\T1/pcr/m/n/10 diag.panel.splom []\T1/ptm/m/n/10 to know what ar-gu-ments thi
s func-tion is passed
[2835]
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\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 diag.panel []\T1/ptm/m/n/10 from []\T1/pcr/
m/n/10 panel.pairs[]\T1/ptm/m/n/10 . Cur-rently ig-nored by
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 []              \T1/pcr/m/n/9 function(i,j) hcl.colors(11)[i+j-1]) ## rainbow(
11, start=.12, end=.5)[i+j-1])[] 
[2836] [2837]
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[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2838]
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 []                  \T1/pcr/m/n/9 panel.qqmath(..., f.value = ppoints(100), ta
ils.n = 50))[] 
[2839] [2840] [2841]
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[]\T1/pcr/m/n/10 "lm" []\T1/ptm/m/n/10 adds a lin-ear re-gres-sion line (same a
s [][][]\T1/pcr/m/n/10 panel.lmline[][][][]\T1/ptm/m/n/10 , ex-cept
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\T1/ptm/m/n/10 for de-fault graph-i-cal pa-ram-e-ters). []\T1/pcr/m/n/10 "loess
" []\T1/ptm/m/n/10 adds a loess fit (same as
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[]\T1/ptm/m/n/10 Most gen-er-ally, []\T1/pcr/m/n/10 grid []\T1/ptm/m/n/10 can b
e a list of ar-gu-ments to be sup-plied to
[2842]
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 []       \T1/pcr/m/n/9 ylab = list(c("horizontal=TRUE", "horizontal=FALSE"), y
 = c(1/6, 4/6)),[] 
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 []       \T1/pcr/m/n/9 scales = list(alternating = c(0, 2), tck = c(0, 0.7), d
raw = FALSE),[] 
[2843]
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 []        \T1/pcr/m/n/10 font, fontfamily, fontface, cex, ..., identifier, nam
e.type)[] 
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 []      \T1/pcr/m/n/10 adj = c(0.5, 0.5), pos = NULL, offset = 0.5, ..., ident
ifier, name.type)[] 
[2844] [2845] [2846]
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 []\T1/pcr/m/n/10 panel.grid(h=3, v=3, col, col.line, lty, lwd, x, y, ..., iden
tifier = "grid")[] 
[2847]
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[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
[2848]
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 []           \T1/pcr/m/n/9 panel.superpose(x, y, ..., panel.groups = panel.ave
rage, grid = FALSE,[] 
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 []                                \T1/pcr/m/n/9 args = list(mean = mean(x), sd
 = sd(x)), ...)[] 
[2849] [2850] [2851] [2852] [2853] [2854] [2855]
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[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/pcr/m/n/10 panel.super
pose
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[]\T1/ptm/m/n/10 from []\T1/pcr/m/n/10 panel.superpose.2[]\T1/ptm/m/n/10 , and 
to []\T1/pcr/m/n/10 panel.groups []\T1/ptm/m/n/10 from
[2856] [2857]
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 []\T1/pcr/m/n/10 prepanel.default.bwplot(x, y, horizontal, nlevels, origin, st
ack, ...)[] 
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 []\T1/pcr/m/n/10 prepanel.default.histogram(x, breaks, equal.widths, type, nin
t, ...)[] 
[2858]
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 []\T1/pcr/m/n/10 prepanel.default.densityplot(x, darg, groups, weights, subscr
ipts, ...)[] 
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[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/pcr/m/n/10 type [
]\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2859]
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[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2860] [2861]
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[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
[2862]
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 []                \T1/pcr/m/n/9 ans$bottom$labels$labels <- parse(text = ans$b
ottom$labels$labels)[] 
[2863] [2864]
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 []\T1/pcr/m/n/9 xyplot(sunspot.year ~ time(sunspot.year) | equal.count(time(su
nspot.year)),[] 
[2865]
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\T1/pcr/m/n/10 condition []\T1/ptm/m/n/10 for 2-D, and []\T1/pcr/m/n/10 left, r
ight.x, right.y, left.name, right.x.name,
[2866] [2867] [2868] [2869] [2870] [2871] [2872]
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[]\T1/ptm/m/n/10 Factor with lev-els []\T1/pcr/m/n/10 "Svansota"[]\T1/ptm/m/n/1
0 , []\T1/pcr/m/n/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Manchuria"[]
\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 475"[]\T1/ptm/m/n/10 ,
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[]\T1/pcr/m/n/10 "Velvet"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Peatland"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "Glabron"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "No. 4
57"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "Wisconsin No. 38"[]\T1/ptm/m/n/10 ,
[2873] [2874] [2875]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.melanoma}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.10186 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                 [2876] [2877] [2878]
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\T1/pcr/m/n/10 diseases[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Diabetes[]\T1/ptm/m/
n/10 , []\T1/pcr/m/n/10 Flu and pneumonia[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 He
art disease[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 Lower
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 []        \T1/pcr/m/n/9 par.settings = simpleTheme(pch = 16), auto.key = list(
columns = 2),[] 
[2879] [2880]) (./mgcv-pkg.tex
Chapter 24.
[2881] [2882]
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 []\T1/pcr/m/n/10 bam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL, 
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 []    \T1/pcr/m/n/10 paraPen=NULL,chunk.size=10000,rho=0,AR.start=NULL,discret
e=FALSE,[] 
[2883]
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 []    \T1/pcr/m/n/10 coef=NULL,drop.unused.levels=TRUE,G=NULL,fit=TRUE,drop.in
tercept=NULL,...)[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2884] [2885] [2886] [2887]
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[][][]\T1/pcr/m/n/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gamObject[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][]\T1
/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
[2888]
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 []\T1/pcr/m/n/9 system.time(b2 <- bam(y ~ s(x0,bs=bs,k=k)+s(x1,bs=bs,k=k)+s(x2
,bs=bs,k=k)+[] 
[2889] [2890] [2891]
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[]\T1/ptm/m/n/10 The link func-tion: one of []\T1/pcr/m/n/10 "logit"[]\T1/ptm/m
/n/10 , []\T1/pcr/m/n/10 "probit"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "cloglog" 
[]\T1/ptm/m/n/10 and
[2892] [2893]
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[]\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t
ing en-vi-ron-ment vari-able
[2894] [2895]
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[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
[2896]
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[]\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro
-duc-tion with R (2nd edi-tion).
[2897]
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[2899] [2900] [2901] [2902] [2903] [2904] [2905]
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h + 2*b$family$data$
q^.5),col=2)[] 
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 []\T1/pcr/m/n/9 lines(b$family$data$tr,exp(-b$family$data$h - 2*b$family$data$
q^.5),col=2)[] 
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 []    \T1/pcr/m/n/9 plot(b$y[oy],rs[oy,ii[1]],ylim=c(-3,3),type="l",ylab="scor
e residuals",[] 
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 []\T1/pcr/m/n/9 bs <- gam(cbind(time,strata)~s(age,by=sex)+sex+s(nodes)+perfor
+rx+obstruct[] 
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 []\T1/pcr/m/n/9 if (i==1) plot(bs$family$data$tr[ind],exp(-bs$family$data$h[in
d]),type="l",[] 
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 []      \T1/pcr/m/n/9 lines(bs$family$data$tr[ind],exp(-bs$family$data$h[ind])
,lwd=2,col=i)[] 
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 []\T1/pcr/m/n/9 b <- gam(t~s(x0)+s(x1)+s(x2,k=15)+s(x3),family=cox.ph,weights=
d,data=surv)[] 
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[2908]
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 []  \T1/pcr/m/n/9 if (inter) prg <- txtProgressBar(min = 0, max = length(sid),
 initial = 0,[] 
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 []    \T1/pcr/m/n/9 if (um[[et]][1]==max(tr)&&um[[status]][1]==1) um[[event]][
nrow(um)] <- 1[] 
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 []\T1/pcr/m/n/9 pd <- data.frame(lapply(X=di,FUN=app,t=di$day,to=te)) ## inter
polate to te[] 
[2910] [2911] [2912] [2913] [2914] [2915] [2916]
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 []\T1/pcr/m/n/9 bd <- bam(y~s(x0)+ s(x1) + s(x1,fac,bs="sz",k=5)+s(x2,k=20),di
screte=TRUE)[] 
[2917] [2918] [2919]
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 []\T1/pcr/m/n/10 fixDependence(X1,X2,tol=.Machine$double.eps^.5,rank.def=0,str
ict=FALSE) 
[2920] [2921] [2922] [2923] [2924] [2925] [2926]
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 []\T1/pcr/m/n/10 gam(formula,family=gaussian(),data=list(),weights=NULL,subset
=NULL,[] 
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[]\T1/ptm/m/n/10 A GAM for-mula, or a list of for-mu-lae (see [][][]\T1/pcr/m/n
/10 formula.gam[][][] []\T1/ptm/m/n/10 and also
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2927]
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\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2928] [2929] [2930]
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\T1/ptm/m/n/10 eral lin-ear func-tion-als of smooths, via the sum-ma-tion con-v
en-tion mech-a-nism de-scribed in
[2931] [2932]
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[][][]\T1/pcr/m/n/10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
gamObject[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 smooth.terms[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][] [][]predict.
gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10
 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 g
am.side[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.selection[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 gam.control[][][] [][]gam.check[][][][]\T1/ptm
/m/n/10 ,
[2933]
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[2936] [2937]
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 []\T1/pcr/m/n/10 gam.control(nthreads=1,ncv.threads=1,irls.reg=0.0,epsilon = 1
e-07, maxit = 200, 
[2938] [2939] [2940] [2941] [2942] [2943]
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 []         \T1/pcr/m/n/10 mustart = NULL, offset = rep(0, nobs), U1 = diag(nco
l(x)),[] 
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 []         \T1/pcr/m/n/10 printWarn=TRUE,scoreType="REML",null.coef=rep(0,ncol
(x)),[] 
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 []         \T1/pcr/m/n/10 pearson.extra=0,dev.extra=0,n.true=-1,Sl=NULL,nei=NU
LL,...)[] 
[2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951]
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[]\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/pcr/m/n/10 gam []\T1/ptm
/m/n/10 mod-els us-ing []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (
see
[2952] [2953]
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 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
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[]\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix
ed penalty, if
[2957] [2958] [2959] [2960] [2961] [2962] [2963]
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 []  \T1/pcr/m/n/9 mod <- gam(y~s(a,bs="re")+s(b,bs="re")+s(a,b,bs="re")+s(x0,i
d=1)+s(x1,id=1)+[] 
[2964] [2965] [2966]
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 []\T1/pcr/m/n/10 gamlss.gH(X, jj, l1, l2, i2, l3 = 0, i3 = 0, l4 = 0, i4 = 0, 
d1b = 0, 
[2967] [2968]
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2969]
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[]\T1/ptm/m/n/10 In the event of []\T1/pcr/m/n/10 lme []\T1/ptm/m/n/10 con-ver-
gence fail-ures, con-sider mod-i-fy-ing
[2970] [2971]
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[][][]\T1/pcr/m/n/10 magic[][][] []\T1/ptm/m/n/10 for an al-ter-na-tive for cor
-re-lated data, [][][]\T1/pcr/m/n/10 te[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gam[][][][]\T1/ptm
/m/n/10 , [][][]\T1/pcr/m/n/10 plot.gam[][][][]\T1/ptm/m/n/10 ,
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[][][]\T1/pcr/m/n/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 n
egbin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 vis.gam[][][][]\T1/ptm/m/n/1
0 ,[][][]\T1/pcr/m/n/10 pdTens[][][][]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 gamm4 [
]\T1/ptm/m/n/10 ( [][]$\T1/pcr/m/n/10 https : / / cran . r-[]project .
[2972]
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[2974] [2975] [2976]
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[]\T1/ptm/m/n/10 If `outer' it-er-a-tion has been used to fit the model (see []
[][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 ar-gu-ment
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[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
[2977] [2978] [2979] [2980] [2981] [2982] [2983]
Underfull \hbox (badness 6708) in paragraph at lines 6009--6010
[]\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/pcr/m/n/10 gam(..
.,fit=FALSE) []\T1/ptm/m/n/10 or
[2984] [2985]
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 []  \T1/pcr/m/n/9 ## example using a scale location model for the motorcycle d
ata. A simple plotting[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6083--6083
 []      \T1/pcr/m/n/9 } else lines(xg,predict(din,xg)$y,col=lcol[j],lwd=lwd[j]
,lty=lty[j])[] 
[2986]
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 []  \T1/pcr/m/n/9 fv <- predict(b,se=TRUE) ## usual Gaussian approximation, fo
r comparison[] 
[2987] [2988]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 6234--6234
 []       \T1/pcr/m/n/9 (1+exp(-10*(x[201:300]-.5)))-0.9933071) + z*(1-z)*5 + r
norm(100)*.4[] 
[2989] [2990] [2991] [2992] [2993]
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 []\T1/pcr/m/n/10 jagam(formula,family=gaussian,data=list(),file,weights=NULL,n
a.action, 
[2994]
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 []\T1/pcr/m/n/10 control=gam.control(),centred=TRUE,sp.prior = "gamma",diagona
lize=FALSE)[] 
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\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
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[2999] [3000]
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 []\T1/pcr/m/n/10 ldTweedie(y,mu=y,p=1.5,phi=1,rho=NA,theta=NA,a=1.001,b=1.999,
all.derivs=FALSE) 
[3001] [3002] [3003] [3004]
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 []\T1/pcr/m/n/9 "The world is ruled by idiots because only an idiot would want
 to rule the world.",[] 
Overfull \hbox (36.78088pt too wide) in paragraph at lines 7372--7372
 []      \T1/pcr/m/n/10 .Machine$double.eps^0.5),extra.rss=0,n.score=length(y),
nthreads=1)[] 
[3009] [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017]
Underfull \hbox (badness 1242) in paragraph at lines 7915--7916
[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
[3018] [3019]
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 []\T1/pcr/m/n/9 ## Alternative, better scaling example, using the discrete opt
ion with bam...[] 
[3020] [3021]
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 []\T1/pcr/m/n/9 for (sim in c(1,7)) { ## cycle over uncorrelated and correlate
d covariates[] 
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 []    \T1/pcr/m/n/9 dat1[[dname[i]]][dat1[[by.name]]] <- mean(dat1[[dname[i]]]
,na.rm=TRUE)[] 
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[3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033]
[3034] [3035] [3036] [3037] [3038] [3039]
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[3041]
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[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/pcr/m/n/10 Dim
.pdIndot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9309--9312
[]\T1/pcr/m/n/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 logDet.pd
Idnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdConstruct.pdIdnot[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3118) in paragraph at lines 9309--9312
[]\T1/pcr/m/n/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdMatrix.p
dIdnot[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 solve.pdIdnot[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 summary.pdIdnot[]\T1/ptm/m/n/10 .
[3042]
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[]\T1/ptm/m/n/10 These func-tions ([]\T1/pcr/m/n/10 pdTens[]\T1/ptm/m/n/10 , []
\T1/pcr/m/n/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 pdFactor.p
dTens[]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3108) in paragraph at lines 9365--9368
[]\T1/pcr/m/n/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 coef.pdTens
 []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 summary.pdTens[]\T1/ptm/m/n/10 ) would n
ot nor-mally be
[3043] [3044] [3045]
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 []\T1/pcr/m/n/10 plot(x,residuals=FALSE,rug=NULL,se=TRUE,pages=0,select=NULL,s
cale=-1,[] 
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 []         \T1/pcr/m/n/10 n=100,n2=40,n3=3,pers=FALSE,theta=30,phi=30,jit=FALS
E,xlab=NULL,[] 
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 []         \T1/pcr/m/n/10 trans=I,seWithMean=FALSE,unconditional=FALSE,by.resi
ds=FALSE,[] 
[3046] [3047] [3048]
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[]\T1/ptm/m/n/10 just won't let you do it. In this case, the quick-est op-tion 
is some-times to clone the
[3049] [3050] [3051] [3052]
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 []        \T1/pcr/m/n/10 na.action=na.pass,cluster=NULL,discrete=TRUE,n.thread
s=1,gc.level=0,...)[] 
Underfull \hbox (badness 1062) in paragraph at lines 9996--10000
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 type=="terms" []\T1/ptm/m/n/10 or []\T1/pc
r/m/n/10 type="iterms" []\T1/ptm/m/n/10 then terms (smooth or para-
[3053] [3054] [3055]
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 []        \T1/pcr/m/n/10 na.action=na.pass,unconditional=FALSE,iterms.type=NUL
L,...)[] 
[3056] [3057]
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 []\T1/pcr/m/n/9 x1 <- seq(.2,.8,length=m1);x2 <- seq(.2,.8,length=m2) ## margi
nal grid points[] 
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 []\T1/pcr/m/n/9 df <- data.frame(x0=rep(.5,n),x1=rep(x1,m2),x2=rep(x2,each=m1)
,x3=rep(0,n))[] 
[3058]
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 []  \T1/pcr/m/n/9 Xi[,(i-1)*9+1:9+1] <- Xp[,(i-1)*9+1:9+1] ## Xi%*%coef(b) = s
mooth deriv i[] 
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[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
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\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
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[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[3061]
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[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
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\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
[3062]
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[]\T1/ptm/m/n/10 The smooth ob-ject will be largely what is re-turned from
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[][][]\T1/pcr/m/n/10 smooth.construct.so.smooth.spec[][][][]\T1/ptm/m/n/10 , al
-though el-e-ments []\T1/pcr/m/n/10 X []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 S [
]\T1/ptm/m/n/10 are not needed,
[3063] [3064] [3065]
Underfull \hbox (badness 1253) in paragraph at lines 10737--10739
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
[3066] [3067] [3068] [3069] [3070]
Underfull \hbox (badness 1946) in paragraph at lines 10990--10997
[]\T1/ptm/m/n/10 The sec-ond method rep-re-sents the con-ven-tional ran-dom ef-
fects in a GAM in the same
Underfull \hbox (badness 2221) in paragraph at lines 10990--10997
\T1/ptm/m/n/10 way that the smooths are rep-re-sented --- as pe-nal-ized re-gre
s-sion terms. This method
Underfull \hbox (badness 2042) in paragraph at lines 10990--10997
\T1/ptm/m/n/10 can be used with [][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10
 by mak-ing use of []\T1/pcr/m/n/10 s(...,bs="re") []\T1/ptm/m/n/10 terms in a 
model: see
Underfull \hbox (badness 2846) in paragraph at lines 10998--11001
[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/pcr/m/n
/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/pcr/m/n/10 gam[][][] []\T1
/ptm/m/n/10 can be used:
Underfull \hbox (badness 5862) in paragraph at lines 10998--11001
\T1/ptm/m/n/10 see [][][]\T1/pcr/m/n/10 gam.models[][][][]\T1/ptm/m/n/10 . If s
mooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[3071]
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 []\T1/pcr/m/n/9 rm1 <- gam(y ~ s(fac,bs="re")+s(x0)+s(x1)+s(x2)+s(x3),data=dat
,method="ML")[] 
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 []\T1/pcr/m/n/9 ## The effect of the new factor levels (or any interaction inv
olving them)[] 
[3072]
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[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/pcr/m/n/
10 "deviance"[]\T1/ptm/m/n/10 ,
[3073] [3074] [3075] [3076] [3077]
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 []\T1/pcr/m/n/10 s(..., k=-1,fx=FALSE,bs="tp",m=NA,by=NA,xt=NULL,id=NULL,sp=NU
LL,pc=NULL) 
[3078] [3079] [3080] [3081] [3082] [3083]
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 []  \T1/pcr/m/n/9 true <- mu + (del * sigma) * sinh((1/del) * asinh(qnorm(qq))
 + (eps/del))[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 11794--11794
 []\T1/pcr/m/n/9 b <- gam(list(accel~s(times, k=20, bs = "ad"), ~s(times, k = 1
0), ~1, ~1),[] 
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[3085]
Underfull \hbox (badness 3861) in paragraph at lines 11896--11899
[]\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to
 model ma-trix X, or, if
Overfull \hbox (36.78088pt too wide) in paragraph at lines 11905--11905
 []\T1/pcr/m/n/10 Sl.initial.repara(Sl, X, inverse = FALSE, both.sides = TRUE, 
cov = TRUE,[] 
[3086]
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[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
Underfull \hbox (badness 10000) in paragraph at lines 11962--11966
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 inverse==TRUE []\T1/ptm/m/n/10 and []\T1/p
cr/m/n/10 both.sides==FALSE []\T1/ptm/m/n/10 then the re-
[3087] [3088] [3089]
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 [] \T1/pcr/m/n/9 range(er$values-um$values[ind]);range(abs(er$vectors)-abs(um$
vectors[,ind]))[] 
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[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[3090]
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\T1/ptm/m/n/10 The last en-try will be the []\T1/pcr/m/n/10 by []\T1/ptm/m/n/10
 vari-able, if []\T1/pcr/m/n/10 object$by []\T1/ptm/m/n/10 is not []\T1/pcr/m/n
/10 "NA"[]\T1/ptm/m/n/10 .
Underfull \hbox (badness 1502) in paragraph at lines 12206--12218
[]\T1/pcr/m/n/10 cs.smooth.spec []\T1/ptm/m/n/10 (cu-bic re-gres-sion splines w
ith shrinkage-to-zero); []\T1/pcr/m/n/10 cc.smooth.spec
[3091]
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[]\T1/ptm/m/n/10 method is used if there is no more spe-cific method avail-able
. Plot meth-ods can be
Underfull \hbox (badness 2970) in paragraph at lines 12223--12227
\T1/ptm/m/n/10 added for spe-cific smooth classes, see source code for []\T1/pc
r/m/n/10 mgcv:::plot.sos.smooth[]\T1/ptm/m/n/10 ,
[3092] [3093] [3094]
Underfull \hbox (badness 6876) in paragraph at lines 12418--12424
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of on
e or two vari-ables, spec-i-fied via terms like
[3095]
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3096] [3097]
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3098]
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 []  \T1/pcr/m/n/9 b <- gam(y~s(x0,bs=bs,m=c(4,2))+s(x1,bs=bs)+s(x2,k=15,bs=bs,
m=c(4,3,0))+[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12643--12643
 []  \T1/pcr/m/n/9 ## now a model with first order penalty evaluated over (-.5,
1.5) (black)[] 
[3099]
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 []  \T1/pcr/m/n/9 ## penalty defined on (-.5,1.5) gives plausible predictions 
and intervals[] 
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 []  \T1/pcr/m/n/9 ## penalty defined on whole real line gives constant width i
ntervals away[] 
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 []  \T1/pcr/m/n/9 ## penalty defined only over the data interval (0,1) gives w
ild and wide[] 
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 []  \T1/pcr/m/n/9 ## extrapolation since penalty has been \TS1/cmtt/m/n/9 `\T1
/pcr/m/n/9 turned off\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 outside data range:[] 
[3100]
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a
Underfull \hbox (badness 10000) in paragraph at lines 12736--12738
\T1/ptm/m/n/10 term []\T1/pcr/m/n/10 s(...,bs="cr",...)[]\T1/ptm/m/n/10 , []\T1
/pcr/m/n/10 s(...,bs="cs",...) []\T1/ptm/m/n/10 or
[3101] [3102]
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3103] [3104]
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 []\T1/pcr/m/n/9 b <- gam(y~s(x,z,bs="ds",m=c(1,.5),k=50),data=data)  ## first 
deriv penalty[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 12948--12948
 []\T1/pcr/m/n/9 b1 <- gam(y~s(x,z,bs="ds",m=c(2,.5),k=50),data=data) ## modifi
ed 2nd deriv[] 
[3105] [3106]
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3107] [3108] [3109] [3110] [3111]
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 []\T1/pcr/m/n/9 b <- gam(crime ~ s(district,bs="mrf",k=20,xt=xt),data=columb,m
ethod="REML")[] 
[3112]
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[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3113] [3114]
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[]\T1/ptm/m/n/10 For the []\T1/pcr/m/n/10 smooth.construct []\T1/ptm/m/n/10 met
hod a smooth spec-i-fi-ca-tion ob-
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\T1/ptm/m/n/10 ject, usu-ally gen-er-ated by a term []\T1/pcr/m/n/10 s(x,...,bs
="re",)[]\T1/ptm/m/n/10 . For the
Underfull \hbox (badness 7099) in paragraph at lines 13571--13574
[]\T1/pcr/m/n/10 predict.Matrix []\T1/ptm/m/n/10 method an ob-ject of class []\
T1/pcr/m/n/10 "random.effect"
[3115] [3116]
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 []\T1/pcr/m/n/9 b <- c(rnorm(nb/2)*2,rnorm(nb/2)*.5) ## random effect now with
 2 variances[] 
[3117]
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[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
Underfull \hbox (badness 7832) in paragraph at lines 13702--13708
[]\T1/pcr/m/n/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a
 []\T1/pcr/m/n/10 gam []\T1/ptm/m/n/10 for-
[3118] [3119] [3120]
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 []\T1/pcr/m/n/9 ## notice NULL element in \TS1/pcr/m/n/9 '\T1/pcr/m/n/9 xt\TS1
/pcr/m/n/9 ' \T1/pcr/m/n/9 list - to indicate no xt object for "cr" basis...[] 
Underfull \vbox (badness 10000) has occurred while \output is active [3121]
Underfull \vbox (badness 10000) has occurred while \output is active [3122]
Underfull \hbox (badness 10000) in paragraph at lines 14019--14027
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths on th
e sphere, via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14045--14046
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3123] [3124] [3125]
Underfull \hbox (badness 7613) in paragraph at lines 14190--14193
[]\T1/ptm/m/n/10 method an ob-ject of class []\T1/pcr/m/n/10 "sz.interaction" [
]\T1/ptm/m/n/10 pro-duced by the
[3126]
Underfull \hbox (badness 1546) in paragraph at lines 14211--14212
[]\T1/ptm/m/n/10 The terms can have a smooth-ing pa-ram-e-ter per smooth, or a 
sin-gle smooth-ing pa-ram-e-
Overfull \hbox (128.58029pt too wide) in paragraph at lines 14257--14257
 []\T1/pcr/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs
="sz",id=1),data=dat,method="REML")[] 
[3127] [3128] [3129]
Underfull \hbox (badness 3396) in paragraph at lines 14403--14406
[][][]\T1/pcr/m/n/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of an
y num-ber of vari-ables, spec-i-fied via terms like
Underfull \hbox (badness 10000) in paragraph at lines 14448--14450
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3130] [3131] [3132] [3133] [3134] [3135]
Underfull \hbox (badness 10000) in paragraph at lines 14739--14741
[]\T1/pcr/m/n/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see
Underfull \hbox (badness 10000) in paragraph at lines 14769--14773
[][][]\T1/pcr/m/n/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 te[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 t2[][][] [][]tprs[][][][]\T1/ptm/m/n/10 ,[
][][]\T1/pcr/m/n/10 Duchon.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
cubic.regression.spline[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 p.spline[][
][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14769--14773
[][][]\T1/pcr/m/n/10 mrf[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 soap[][][
][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Spherical.Spline[][][][]\T1/ptm/m/n/10
 , [][][]\T1/pcr/m/n/10 adaptive.smooth[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14769--14773
[][][]\T1/pcr/m/n/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/
m/n/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 ,
[3136] [3137] [3138] [3139] [3140]
Underfull \hbox (badness 2158) in paragraph at lines 15059--15059
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[3141] [3142]
Overfull \hbox (48.78088pt too wide) in paragraph at lines 15138--15138
 []\T1/pcr/m/n/10 spasm.sp(object,sp,w=rep(1,object$nobs),get.trH=TRUE,block=0,
centre=FALSE)[] 
[3143] [3144]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 15272--15272
 []                  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars
"),...)[] 
[3145] [3146]
Underfull \hbox (badness 4846) in paragraph at lines 15403--15406
[]\T1/ptm/m/n/10 The es-ti-mated co-vari-ance ma-trix of the pa-ram-e-ters (or 
es-ti-ma-tors if
[3147] [3148] [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157]
[3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166]
Overfull \hbox (120.78088pt too wide) in paragraph at lines 16621--16621
 []\T1/pcr/m/n/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL,
unconditional=FALSE, ...)[] 
[3167]
Underfull \hbox (badness 1715) in paragraph at lines 16643--16644
[]\T1/ptm/m/n/10 Basically, just ex-tracts []\T1/pcr/m/n/10 object$Ve[]\T1/ptm/
m/n/10 , []\T1/pcr/m/n/10 object$Vp []\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 object
$Vc []\T1/ptm/m/n/10 (if avail-able) from a
[3168] [3169] [3170]
Overfull \hbox (54.78088pt too wide) in paragraph at lines 16833--16833
 []\T1/pcr/m/n/10 XWXd(X,w,k,ks,ts,dt,v,qc,nthreads=1,drop=NULL,ar.stop=-1,ar.r
ow=-1,ar.w=-1, 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 16835--16835
 []\T1/pcr/m/n/10 XWyd(X,w,y,k,ks,ts,dt,v,qc,drop=NULL,ar.stop=-1,ar.row=-1,ar.
w=-1,lt=NULL)[] 
Overfull \hbox (0.78088pt too wide) in paragraph at lines 16837--16837
 []\T1/pcr/m/n/10 diagXVXd(X,V,k,ks,ts,dt,v,qc,drop=NULL,nthreads=1,lt=NULL,rt=
NULL)[] 
[3171]
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[]\T1/ptm/m/n/10 Negative to ig-nore. Oth-er-wise sum rows
Underfull \hbox (badness 1668) in paragraph at lines 16857--16858
[]\T1/pcr/m/n/10 (ar.stop[i-1]+1):ar.stop[i] []\T1/ptm/m/n/10 of the rows se-le
cted by []\T1/pcr/m/n/10 ar.row
[3172]
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[3174]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 17045--17045
 []\T1/pcr/m/n/9 ## 1. If the zero inflation rate becomes decoupled from the li
near predictor,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 17046--17046
 []\T1/pcr/m/n/9 ## it is possible for the linear predictor to be almost unboun
ded in regions[] 
[3175]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17058--17058
 []\T1/pcr/m/n/9 ## 3. Refit fixing the theta parameters at their estimated val
ues, to check we[] 
[3176] [3177] [3178]) (./nlme-pkg.tex
Chapter 25.
[3179]
Underfull \hbox (badness 1009) in paragraph at lines 84--93
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3180]
Underfull \hbox (badness 1009) in paragraph at lines 174--183
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3181] [3182] [3183] [3184] [3185]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 454--454
 []  \T1/pcr/m/n/9 lme(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
[3186] [3187]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 595--595
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 251-254 ---------------------------
---------------[] 
Overfull \hbox (9.78043pt too wide) in paragraph at lines 611--611
 []\T1/pcr/m/n/9 # Compare an "lme" object with a "gls" object (test would be n
on-sensical!)[] 
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 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 222-225 ---------------------------
---------------[] 
Overfull \hbox (20.58041pt too wide) in paragraph at lines 621--621
 []\T1/pcr/m/n/9 ## Pinheiro and Bates, pp. 352-365 ---------------------------
---------------[] 
[3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 1085--1085
 []                  \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxil
lary fissure"),[] 
[3196]
Underfull \hbox (badness 5446) in paragraph at lines 1147--1149
[]\T1/ptm/m/n/10 `[]\T1/pcr/m/n/10 http://stat.gamma.rug.nl/snijders/multilevel
.htm[]\T1/ptm/m/n/10 ', the first edi-tion of
[3197] [3198] [3199] [3200] [3201] [3202] [3203]
Underfull \hbox (badness 10000) in paragraph at lines 1626--1629
[][][]\T1/pcr/m/n/10 lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 fixed.
effects.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 ranef.lmList[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.ranef.lmList[][][][]\T1/ptm/m/n/10 
,
[3204]
Underfull \hbox (badness 3780) in paragraph at lines 1643--1645
[]\T1/ptm/m/n/10 This method func-tion ex-tracts the co-ef-fi-cients as-so-ci-a
ted with each com-po-nent of the
[3205] [3206] [3207] [3208] [3209]
Underfull \hbox (badness 2042) in paragraph at lines 1992--1998
\T1/ptm/m/n/10 is in-ner to the []\T1/pcr/m/n/10 displayLevel []\T1/ptm/m/n/10 
group-ing fac-tor. If equal to []\T1/pcr/m/n/10 TRUE[]\T1/ptm/m/n/10 ,
[3210]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2054--2054
 []\T1/pcr/m/n/9 collapse(Pixel, collapse = 1)  # same as collapse(Pixel, colla
pse = "Dog")[] 
[3211]
Underfull \hbox (badness 1132) in paragraph at lines 2143--2145
[]\T1/ptm/m/n/10 fitted model ob-jects, from which pre-dic-tions can be ex-trac
ted us-ing the
[3212] [3213]
Underfull \hbox (badness 4168) in paragraph at lines 2254--2260
[][][]\T1/pcr/m/n/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corAR
MA[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 ,
[3214]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2279--2279
 []  \T1/pcr/m/n/9 gls(rate ~(pressure + I(pressure^2) + I(pressure^3) + I(pres
sure^4))*QB,[] 
[3215] [3216] [3217] [3218] [3219] [3220] [3221] [3222]
Underfull \hbox (badness 10000) in paragraph at lines 2845--2849
[][][]\T1/pcr/m/n/10 corFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cor
Matrix.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 recalc.corStruct[
][][][]\T1/ptm/m/n/10 ,
[3223] [3224] [3225] [3226] [3227] [3228pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.corMatrix.corCompSymm}) has been already used, d
uplicate ignored
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  
l.3188 ...trix(cs1, covariate = 1:4, corr = FALSE)
                                                  ] [3229] [3230] [3231]
[3232] [3233] [3234]
Underfull \hbox (badness 6493) in paragraph at lines 3580--3588
[][][]\T1/pcr/m/n/10 corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corGau
s[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corLin[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 corSp
her[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T
1/ptm/m/n/10 ,
[3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245]
[3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256]
[3257] [3258]
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[][][]\T1/pcr/m/n/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/p
cr/m/n/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 ,
[3259] [3260] [3261] [3262] [3263] [3264] [3265]
Underfull \hbox (badness 10000) in paragraph at lines 5592--5595
[][][]\T1/pcr/m/n/10 getGroupsFormula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 getGroups
.gls[][][][]\T1/ptm/m/n/10 ,
[3266] [3267] [3268] [3269] [3270] [3271] [3272] [3273] [3274]
Underfull \hbox (badness 2799) in paragraph at lines 6098--6104
\T1/ptm/m/n/10 covariance ma-trix, ei-ther []\T1/pcr/m/n/10 "random.effects" []
\T1/ptm/m/n/10 for the random-effects
[3275]
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[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3276]
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[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gl
sControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 glsObject[][][][]\T1/ptm/
m/n/10 , [][][]\T1/pcr/m/n/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 predict.gls[][][][]
\T1/ptm/m/n/10 ,
[3277]
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3278] [3279] [3280] [3281]
Underfull \hbox (badness 7133) in paragraph at lines 6560--6564
[]\T1/ptm/m/n/10 an op-tional data frame con-tain-ing the vari-ables named in [
]\T1/pcr/m/n/10 model[]\T1/ptm/m/n/10 ,
[3282]
Underfull \hbox (badness 10000) in paragraph at lines 6659--6665
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gn
lsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsObject[][][][]\T1/pt
m/m/n/10 , [][][]\T1/pcr/m/n/10 gnlsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pc
r/m/n/10 predict.gnls[][][][]\T1/ptm/m/n/10 ,
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 []\T1/pcr/m/n/10 gnlsControl(maxIter = 50, nlsMaxIter = 7, msMaxIter = 50, min
Scale = 0.001, 
[3283]
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[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3284] [3285] [3286] [3287]
Underfull \hbox (badness 10000) in paragraph at lines 6995--7002
[][][]\T1/pcr/m/n/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gappl
y[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 gsummary[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nff
GroupedData[][][][]\T1/ptm/m/n/10 ,
[3288]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 7013--7013
 []                \T1/pcr/m/n/9 y = "Distance from pituitary to pterygomaxilla
ry fissure" ),[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 7018--7018
 []\T1/pcr/m/n/9 fm1 <- lme( Orth.new )   # fixed and groups formulae extracted
 from object[] 
Underfull \hbox (badness 2875) in paragraph at lines 7040--7042
[]\T1/ptm/m/n/10 an ob-ject to be sum-ma-rized - usu-ally a []\T1/pcr/m/n/10 gr
oupedData []\T1/ptm/m/n/10 ob-ject or a
[3289] [3290] [3291]
Underfull \hbox (badness 10000) in paragraph at lines 7255--7260
[][][]\T1/pcr/m/n/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr
/m/n/10 Initialize.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initi
alize.glsStruct[][][][]\T1/ptm/m/n/10 ,
[3292] [3293] [3294]
Underfull \hbox (badness 1997) in paragraph at lines 7406--7414
[]\T1/ptm/m/n/10 an op-tional list with con-trol pa-ram-e-ters for the ini-tial
-iza-tion and op-ti-
Underfull \hbox (badness 2205) in paragraph at lines 7406--7414
\T1/ptm/m/n/10 miza-tion al-go-rithms used in []\T1/pcr/m/n/10 lme[]\T1/ptm/m/n
/10 . De-faults to []\T1/pcr/m/n/10 list(niterEM=20,
Underfull \hbox (badness 3118) in paragraph at lines 7429--7432
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initializ
e.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.corStruct[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Initialize.varFunc[][][][]\T1/ptm/m/
n/10 ,
[3295] [3296] [3297]
Underfull \hbox (badness 3354) in paragraph at lines 7645--7647
[]\T1/ptm/m/n/10 linear model co-ef-fi-cients, only present when []\T1/pcr/m/n/
10 which []\T1/ptm/m/n/10 is not equal to
[3298] [3299] [3300] [3301] [3302] [3303] [3304] [3305]
Underfull \hbox (badness 10000) in paragraph at lines 8173--8190
[][][]\T1/pcr/m/n/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lm
e.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lme.groupedData[][][][]\T
1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T
1/pcr/m/n/10 lmeObject[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 8173--8190
[][][]\T1/pcr/m/n/10 lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 lmL
ist[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/1
0 , [][][]\T1/pcr/m/n/10 plot.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
predict.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 qqnorm.lme[][][][]\T1/
ptm/m/n/10 ,
[3306]
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 []    \T1/pcr/m/n/10 subset, method, na.action, control, contrasts, keep.data 
= TRUE)[] 
Underfull \hbox (badness 1642) in paragraph at lines 8225--8247
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a one-sided for-mula o
f the form
[3307] [3308] [3309] [3310]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 8490--8490
 []\T1/pcr/m/n/10 lmeControl(maxIter = 50, msMaxIter = 50, tolerance = 1e-6, ni
terEM = 25, 
[3311]
Underfull \hbox (badness 10000) in paragraph at lines 8538--8540
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
Overfull \hbox (9.78043pt too wide) in paragraph at lines 8582--8582
 []\T1/pcr/m/n/9 # request that information on the evolution of the ms iteratio
ns be printed[] 
[3312] [3313] [3314] [3315] [3316] [3317] [3318] [3319] [3320] [3321] [3322]
[3323]
Underfull \hbox (badness 10000) in paragraph at lines 9345--9352
[][][]\T1/pcr/m/n/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/pcr/m/n/10 gls[][][][
]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 logLik.corStruct[][][][]\T1/ptm/m/n/10 ,
 [][][]\T1/pcr/m/n/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 ,
Overfull \hbox (4.38043pt too wide) in paragraph at lines 9356--9356
 []\T1/pcr/m/n/9 fm1 <- lme(distance ~ Sex * age, Orthodont, random = ~ age, me
thod = "ML") 
[3324] [3325] [3326] [3327] [3328]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9707 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.9707 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                   [3329]
Underfull \hbox (badness 10000) in paragraph at lines 9727--9730
[]\T1/ptm/m/n/10 a ma-trix, or list of ma-tri-ces, with the same di-men-sions a
s
Underfull \hbox (badness 3108) in paragraph at lines 9771--9774
[]\T1/ptm/m/n/10 a ma-trix with the new val-ues to be as-signed to the positive
-definite
Underfull \hbox (badness 2521) in paragraph at lines 9771--9774
\T1/ptm/m/n/10 ma-trix rep-re-sented by []\T1/pcr/m/n/10 object[]\T1/ptm/m/n/10
 . Must have the same di-men-sions as
[3330] [3331] [3332] [3333] [3334] [3335] [3336] [3337] [3338] [3339] [3340]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10451--10451
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights, 
[3341]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10455--10455
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
Underfull \hbox (badness 1596) in paragraph at lines 10484--10510
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[3342] [3343]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 10638--10638
 []\T1/pcr/m/n/10 nlme(model, data, fixed, random, groups, start, correlation, 
weights,[] 
[3344] [3345] [3346]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 10789--10789
 []            \T1/pcr/m/n/10 opt = c("nlminb", "nlm"), natural = TRUE, sigma =
 NULL, ...)[] 
Underfull \hbox (badness 2213) in paragraph at lines 10800--10805
[]\T1/ptm/m/n/10 maximum num-ber of it-er-a-tions for [][][]\T1/pcr/m/n/10 nlmi
nb[][][] []\T1/ptm/m/n/10 ([]\T1/pcr/m/n/10 iter.max[]\T1/ptm/m/n/10 ) or the [
][][]\T1/pcr/m/n/10 nlm[][][]
Underfull \hbox (badness 6961) in paragraph at lines 10822--10826
[]\T1/ptm/m/n/10 a log-i-cal value passed as the []\T1/pcr/m/n/10 trace []\T1/p
tm/m/n/10 to [][][]\T1/pcr/m/n/10 nlminb[][][](.., control=
[3347]
Underfull \hbox (badness 10000) in paragraph at lines 10841--10843
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3348] [3349] [3350] [3351]
Overfull \hbox (96.18033pt too wide) in paragraph at lines 11137--11137
 []\T1/pcr/m/n/9 cfm1 <- confint(fm1) # via profiling each % FIXME: only *one* 
message instead of one *each*[] 
Overfull \hbox (90.78033pt too wide) in paragraph at lines 11138--11138
 []\T1/pcr/m/n/9 mat.class <- class(matrix(1)) # ("matrix", "array") for R >= 4
.0.0;  ("matrix" in older R)[] 
[3352] [3353] [3354] [3355] [3356] [3357]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 11528--11528
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3358] [3359] [3360] [3361] [3362] [3363]
Underfull \hbox (badness 6268) in paragraph at lines 11915--11925
[][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdMatrix[][][][]\T1/ptm/m/n/10 ,
[3364] [3365] [3366] [3367]
Underfull \hbox (badness 10000) in paragraph at lines 12176--12182
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 coef.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdBlocked[][][][]\T1
/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/
pcr/m/n/10 pdConstruct[][][][]\T1/ptm/m/n/10 ,
[3368] [3369] [3370] [3371] [3372]
Underfull \hbox (badness 6876) in paragraph at lines 12498--12500
[]\T1/ptm/m/n/10 If []\T1/pcr/m/n/10 value []\T1/ptm/m/n/10 is an \T1/ptm/m/it/
10 ini-tial-ized []\T1/pcr/m/n/10 pdMat []\T1/ptm/m/n/10 ob-ject, []\T1/pcr/m/n
/10 object []\T1/ptm/m/n/10 will be con-structed from
[3373] [3374]
Underfull \hbox (badness 2452) in paragraph at lines 12654--12661
[][][]\T1/pcr/m/n/10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdC
ompSymm[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdDiag[][][][]\T1/ptm/m/n/
10 , [][][]\T1/pcr/m/n/10 pdIdent[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
pdNatural[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdSymm[][][][]\T1/ptm/m/
n/10 , [][][]\T1/pcr/m/n/10 reStruct[][][][]\T1/ptm/m/n/10 ,
[3375]
Underfull \hbox (badness 10000) in paragraph at lines 12720--12726
[][][]\T1/pcr/m/n/10 as.matrix.pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 pdClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdFactor[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 pdMatrix.reStruct[][][][]\T1/ptm/m/n/10 ,
[3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 13309--13309
 []\T1/pcr/m/n/9 example(compareFits) # cF12 <- compareFits(coef(lmList(Orthodo
nt)), .. lme(*)) 
[3385] [3386] [3387] [3388] [3389]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 13674--13674
 []\T1/pcr/m/n/9 plot(fm1, resid(., type = "pool") ~ fitted(.) | Sex, abline = 
0, id = 0.05)[] 
[3390]
Underfull \hbox (badness 10000) in paragraph at lines 13701--13704
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nffGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3391]
Underfull \hbox (badness 1838) in paragraph at lines 13744--13751
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/pcr/m/
n/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/pcr/m/n/10 inner
Underfull \hbox (badness 3713) in paragraph at lines 13744--13751
[]\T1/ptm/m/n/10 or []\T1/pcr/m/n/10 innerGroups []\T1/ptm/m/n/10 are non-[]\T1
/pcr/m/n/10 NULL[]\T1/ptm/m/n/10 , a leg-end for the dif-fer-ent []\T1/pcr/m/n/
10 inner
Overfull \hbox (12.78088pt too wide) in paragraph at lines 13801--13801
 []\T1/pcr/m/n/10 plot(x, outer, inner, innerGroups, xlab, ylab, strip, aspect,
 panel,[] 
[3392]
Underfull \hbox (badness 10000) in paragraph at lines 13808--13811
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nfnGroupe
dData[]\T1/ptm/m/n/10 , rep-re-sent-ing a
Underfull \hbox (badness 2469) in paragraph at lines 13808--13811
[]\T1/pcr/m/n/10 groupedData []\T1/ptm/m/n/10 ob-ject with a nu-meric pri-mary 
co-vari-ate and a sin-gle
[3393]
Underfull \hbox (badness 10000) in paragraph at lines 13916--13919
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 nmGrouped
Data[]\T1/ptm/m/n/10 , rep-re-sent-ing a
[3394] [3395]
Underfull \hbox (badness 10000) in paragraph at lines 14010--14012
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 c
ollapse.groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 plot.nfnGroupe
dData[][][][]\T1/ptm/m/n/10 ,
[3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 14534--14534
 []\T1/pcr/m/n/9 newOrth <- data.frame(Sex = c("Male","Male","Female","Female",
"Male","Male"),[] 
[3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412]pdfTeX warning (e
xt4): destination with the same identifier (name{Rfn.random.effects}) has been 
already used, duplicate ignored
<to be read again> 
                   \relax 
l.15187 ...Extract Random Effects}{random.effects}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.random.effects.1}) has been already us
ed, duplicate ignored
<to be read again> 
                   \relax 
l.15187 ...Extract Random Effects}{random.effects}
                                                   [3413] [3414] [3415]
[3416] [3417] [3418] [3419] [3420] [3421] [3422]
Underfull \hbox (badness 2126) in paragraph at lines 15826--15830
[]\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199
7). Phar-ma-coki-net-
[3423]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 15834--15834
 []\T1/pcr/m/n/9 plot(Remifentanil, type = "l", lwd = 2) # shows the 65 patient
s\TS1/pcr/m/n/9 ' \T1/pcr/m/n/9 remi profiles 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 15853--15853
 []    \T1/pcr/m/n/9 stopifnot(all.equal(BSA, Wt^{0.425} * Ht^{0.725} * 0.00718
4, tol = 1.5e-5),[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 15854--15854
 []              \T1/pcr/m/n/9 all.equal(LBM, LBMfn(Wt, Ht, Sex),              
   tol = 7e-7)[] 
[3424]
Underfull \hbox (badness 1009) in paragraph at lines 15884--15893
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3425] [3426]
Overfull \hbox (66.78088pt too wide) in paragraph at lines 16031--16031
 []          \T1/pcr/m/n/10 type = c("response", "pearson", "normalized"), asLi
st = FALSE, ...)[] 
[3427] [3428] [3429] [3430] [3431]
Underfull \hbox (badness 10000) in paragraph at lines 16366--16372
[][][]\T1/pcr/m/n/10 groupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 l
me[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 pdMat[][][][]\T1/ptm/m/n/10 , [
][][]\T1/pcr/m/n/10 solve.reStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10
 summary.reStruct[][][][]\T1/ptm/m/n/10 ,
[3432]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 16398--16398
 []         \T1/pcr/m/n/10 method = c("REML", "ML"), niterEM = c(40, 200), useG
en, ...)[] 
[3433] [3434] [3435] [3436] [3437] [3438] [3439]
Underfull \hbox (badness 1728) in paragraph at lines 16885--16888
[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
[3440] [3441] [3442] [3443] [3444]
Underfull \hbox (badness 1803) in paragraph at lines 17219--17228
\T1/pcr/m/n/10 of an Identity" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdIdent[]\
T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General Positive-Definite,
Underfull \hbox (badness 10000) in paragraph at lines 17219--17228
\T1/pcr/m/n/10 Natural Parametrization" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 p
dNatural[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "General
Underfull \hbox (badness 7888) in paragraph at lines 17219--17228
\T1/pcr/m/n/10 Positive-Definite" []\T1/ptm/m/n/10 for []\T1/pcr/m/n/10 pdSymm[
]\T1/ptm/m/n/10 , and []\T1/pcr/m/n/10 data.class(object)
[3445]
Underfull \hbox (badness 10000) in paragraph at lines 17290--17291
[]\T1/pcr/m/n/10 "Constant plus power of variance
Underfull \hbox (badness 10000) in paragraph at lines 17291--17292
[]\T1/pcr/m/n/10 "Constant plus proportion of variance
[3446] [3447] [3448] [3449]
Underfull \hbox (badness 10000) in paragraph at lines 17541--17549
[][][]\T1/pcr/m/n/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varCo
nstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varConstProp[][][][]\T1/p
tm/m/n/10 , [][][]\T1/pcr/m/n/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 varIdent[][][][]\T1
/ptm/m/n/10 ,
[3450] [3451] [3452] [3453]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 17813--17813
 []\T1/pcr/m/n/9 # Generate some synthetic data using the two-component error m
odel and use 
Overfull \hbox (25.98041pt too wide) in paragraph at lines 17815--17815
 []\T1/pcr/m/n/9 # overparameterisation in the case of a constant term in the v
ariance function[] 
[3454] [3455] [3456] [3457] [3458] [3459]
Underfull \hbox (badness 10000) in paragraph at lines 18251--18261
[][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n
/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rLin[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18251--18261
[][][]\T1/pcr/m/n/10 Variogram.corRatio[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m
/n/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogr
am.corSpher[][][][]\T1/ptm/m/n/10 ,
[3460]
Underfull \hbox (badness 3579) in paragraph at lines 18289--18294
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3461]
Underfull \hbox (badness 3579) in paragraph at lines 18353--18358
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3462]
Underfull \hbox (badness 3579) in paragraph at lines 18416--18421
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3463]
Underfull \hbox (badness 1577) in paragraph at lines 18477--18479
[]\T1/ptm/m/n/10 an ob-ject in-her-it-ing from class []\T1/pcr/m/n/10 "[][]corR
atio[][][]"[]\T1/ptm/m/n/10 , rep-re-sent-ing an Ra-tio-nal
Underfull \hbox (badness 3579) in paragraph at lines 18479--18484
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3464]
Underfull \hbox (badness 3579) in paragraph at lines 18542--18547
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
Underfull \hbox (badness 10000) in paragraph at lines 18575--18584
[][][]\T1/pcr/m/n/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Va
riogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.default[][][][]\
T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 18575--18584
[][][]\T1/pcr/m/n/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/
n/10 Variogram.corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Variogram.co
rRatio[][][][]\T1/ptm/m/n/10 ,
[3465]
Underfull \hbox (badness 3579) in paragraph at lines 18614--18619
\T1/ptm/m/n/10 is to be cal-cu-lated. De-faults to []\T1/pcr/m/n/10 NULL[]\T1/p
tm/m/n/10 , in which case a se-quence
[3466] [3467]
Underfull \hbox (badness 1009) in paragraph at lines 18760--18769
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3468] [3469]
Underfull \hbox (badness 1009) in paragraph at lines 18892--18901
[]\T1/pcr/m/n/10 "response"[]\T1/ptm/m/n/10 , the "raw" resid-u-als (ob-served 
- fit-ted) are used; else, if
[3470] [3471] [3472] [3473] [3474] [3475] [3476] [3477] [3478]) (./nnet-pkg.tex
Chapter 26.
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.multinom.1}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                   [3479]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 71--71
 []         \T1/pcr/m/n/10 contrasts = NULL, Hess = FALSE, summ = 0, censored =
 FALSE,[] 
[3480] [3481] [3482]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 371--371
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3483]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 428--428
 []\T1/pcr/m/n/9 targets <- matrix(c(rep(c(1,0,0),50), rep(c(0,1,0),50), rep(c(
0,0,1),50)),[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 431--431
 []\T1/pcr/m/n/9 ir1 <- nnet(ir[samp,], targets[samp,], size=2, rang=0.1, decay
=5e-4, maxit=200)[] 
[3484] [3485]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 511--511
 []\T1/pcr/m/n/9 ir.nn2 <- nnet(species ~ ., data = ird, subset = samp, size = 
2, rang = 0.1,[] 
[3486]) (./rpart-pkg.tex
Chapter 27.
[3487] [3488] [3489] [3490]
Overfull \hbox (36.78088pt too wide) in paragraph at lines 324--324
 []\T1/pcr/m/n/10 labels(object, digits = 4, minlength = 1L, pretty, collapse =
 TRUE, ...)[] 
[3491] [3492] [3493] [3494]
Underfull \hbox (badness 1442) in paragraph at lines 592--598
[]\T1/ptm/m/n/10 if []\T1/pcr/m/n/10 FALSE[]\T1/ptm/m/n/10 , the leaf nodes wil
l be at the hor-i-zon-tal plot co-or-di-nates of
[3495] [3496]
Overfull \hbox (0.78088pt too wide) in paragraph at lines 738--738
 []     \T1/pcr/m/n/10 filename = paste(deparse(substitute(tree)), ".ps", sep =
 ""),[] 
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[]\T1/ptm/m/n/10 Logical. If []\T1/pcr/m/n/10 TRUE []\T1/ptm/m/n/10 (de-fault),
 adds to the la-bel
Underfull \hbox (badness 1142) in paragraph at lines 771--775
\T1/pcr/m/n/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method [
]\T1/pcr/m/n/10 class[]\T1/ptm/m/n/10 , \T1/pcr/m/n/10 n
[3497] [3498] [3499]
Overfull \hbox (25.98041pt too wide) in paragraph at lines 915--915
 []\T1/pcr/m/n/9 predict(fit, type = "matrix") # level number, class frequencie
s, probabilities[] 
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 []\T1/pcr/m/n/10 print(x, minlength = 0, spaces = 2, cp, digits = getOption("d
igits"),[] 
[3500] [3501] [3502] [3503]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 1180--1180
 []\T1/pcr/m/n/10 rpart(formula, data, weights, subset, na.action = na.rpart, m
ethod, 
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 []      \T1/pcr/m/n/10 model = FALSE, x = FALSE, y = TRUE, parms, control, cos
t, ...)[] 
Underfull \hbox (badness 2846) in paragraph at lines 1243--1245
[]\T1/ptm/m/n/10 a list of op-tions that con-trol de-tails of the []\T1/pcr/m/n
/10 rpart []\T1/ptm/m/n/10 al-go-rithm. See
[3504]
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 []\T1/pcr/m/n/9 par(mfrow = c(1,2), xpd = NA) # otherwise on some devices the 
text is clipped[] 
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 []\T1/pcr/m/n/10 rpart.control(minsplit = 20, minbucket = round(minsplit/3), c
p = 0.01, 
Overfull \hbox (60.78088pt too wide) in paragraph at lines 1304--1304
 []              \T1/pcr/m/n/10 maxcompete = 4, maxsurrogate = 5, usesurrogate 
= 2, xval = 10,[] 
[3505] [3506] [3507] [3508] [3509] [3510] [3511]
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[]\T1/ptm/m/n/10 the ploidy sta-tus of the tu-mor, from flow cy-tom-e-try. Val-
ues are `[]\T1/pcr/m/n/10 diploid[]\T1/ptm/m/n/10 ',
[3512]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 1854--1854
 []     \T1/pcr/m/n/10 pretty = NULL, digits = getOption("digits") - 3, use.n =
 FALSE,[] 
[3513] [3514] [3515]) (./spatial-pkg.tex [3516]
Chapter 28.
[3517] [3518] [3519] [3520] [3521] [3522]
Underfull \hbox (badness 10000) in paragraph at lines 423--427
[3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533]
[3534] [3535]) (./survival-pkg.tex [3536]
Chapter 29.
[3537] [3538]
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 []\T1/pcr/m/n/9 aareg(formula = Surv(time, status) ~ age + sex + ph.ecog, data
 = lung, nmin = 1[] 
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 []\T1/pcr/m/n/9 ## Not run: lines(lfit2[4], col=2)  # Nearly the same, until t
he last point[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 195--195
 []\T1/pcr/m/n/9 # Chronic Granuomatous Disease.  See section 8.5 of Therneau a
nd Grambsch.[] 
[3539] [3540]
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[]\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as 
long as
[3541] [3542]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.aml}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.384 ... Myelogenous Leukemia survival data}{aml}
                                                   [3543]
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(futime, fustat) ~ resid.ds *rx + ecog.ps, da
ta = ovarian) 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 487--487
 []\T1/pcr/m/n/9 fit2 <- coxph(Surv(futime, fustat) ~ resid.ds +rx + ecog.ps, d
ata=ovarian)[] 
[3544]
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 []    \T1/pcr/m/n/10 survreg(Surv(time, status) ~ age + sex + factor(ph.ecog),
 lung)[] 
[3545] [3546] [3547] [3548]
Overfull \hbox (20.58041pt too wide) in paragraph at lines 773--773
 []\T1/pcr/m/n/9 py <- pseudo(survfit(Surv(time, status) ~1, lung), time=730) #
2 year survival 
Overfull \hbox (48.78088pt too wide) in paragraph at lines 796--796
 []    \T1/pcr/m/n/10 method =c("Prentice","SelfPrentice","LinYing","I.Borgan",
"II.Borgan"),[] 
[3549] [3550]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 939--939
 []   \T1/pcr/m/n/9 subcoh = ~subcohort, id=~seqno, stratum=~instit, cohort.siz
e=stratsizes,[] 
[3551] [3552] [3553]
Underfull \hbox (badness 1097) in paragraph at lines 1110--1112
[]\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi
al and negative-binomial data.
Overfull \hbox (4.38043pt too wide) in paragraph at lines 1130--1130
 []\T1/pcr/m/n/9 ppois(4, 10.24153)     #chance of seeing 4 or fewer events wit
h large rate[] 
[3554] [3555]
Overfull \hbox (31.3804pt too wide) in paragraph at lines 1245--1245
 []\T1/pcr/m/n/9 ## Not run: clogit(case ~ spontaneous + induced + strata(strat
um), data=infert) 
[3556]
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 []\T1/pcr/m/n/9 marginal.model <- coxph(Surv(time, status) ~ rx, data= rats, c
luster=litter, 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h
as been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1312 ...erapy for Stage B/C colon cancer}{colon}
                                                   [3557]
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 []  \T1/pcr/m/n/10 influence=0, ranks = FALSE, reverse=FALSE, timefix=TRUE, ke
epstrata=10, ...)[] 
[3558] [3559] [3560]
Overfull \hbox (9.78043pt too wide) in paragraph at lines 1638--1638
 []\T1/pcr/m/n/9 options(na.action = na.exclude)   # predict all 1384 obs, incl
uding missing[] 
[3561] [3562]
Overfull \hbox (18.78088pt too wide) in paragraph at lines 1732--1732
 []\T1/pcr/m/n/10 cox.zph(fit, transform="km", terms=TRUE, singledf=FALSE, glob
al=TRUE) 
[3563] [3564] [3565] [3566]
Underfull \hbox (badness 10000) in paragraph at lines 2048--2063
[]\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f
ol-low the ad-vice of
Underfull \hbox (badness 7486) in paragraph at lines 2048--2063
\T1/ptm/m/n/10 some cod-ing guides and prepend []\T1/pcr/m/n/10 survival:: []\T
1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the spe-
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\T1/ptm/m/n/10 cial terms, e.g., []\T1/pcr/m/n/10 survival::coxph(survival:Surv
(time, status) ~ age +
[3567]
Underfull \hbox (badness 3861) in paragraph at lines 2143--2147
[][][]\T1/pcr/m/n/10 coxph.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 
coxphms.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 coxph.control[][][]
[]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 cluster[][][][]\T1/ptm/m/n/10 , [][][]\
T1/pcr/m/n/10 strata[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 Surv[][][][]\
T1/ptm/m/n/10 ,
[3568]
Overfull \hbox (6.78088pt too wide) in paragraph at lines 2198--2198
 []\T1/pcr/m/n/10 iter.max = 20, toler.inf = sqrt(eps), outer.max = 10, timefix
=TRUE)[] 
[3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576] [3577]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 2825--2825
 [] \T1/pcr/m/n/9 [1] "extreme"     "logistic"    "gaussian"    "weibull"     "
exponential"[] 
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 []\T1/pcr/m/n/10 finegray(formula, data, weights, subset, na.action= na.pass, 
etype, 
[3578] [3579] [3580] [3581]
Overfull \hbox (12.78088pt too wide) in paragraph at lines 3110--3110
 []\T1/pcr/m/n/10 frailty.t(x, sparse = (nclass > 5), theta, df, eps = 1e-05, t
df = 5,[] 
[3582] [3583] [3584] [3585] [3586]
Overfull \hbox (15.18042pt too wide) in paragraph at lines 3451--3451
 []\T1/pcr/m/n/9 kfit <- coxph(Surv(time, status)~ age + sex + disease + frailt
y(id), kidney) 
[3587]
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 []           \T1/pcr/m/n/9 factor(c(0, 1, 2,1,0,2), 0:2, c("censored", "progre
ssion", "death")))[] 
Underfull \hbox (badness 1389) in paragraph at lines 3500--3502
[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
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 []        \T1/pcr/m/n/10 conf.type = c("log", "log-log", "plain", "logit", "ar
csin"),[] 
[3588] [3589]
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 []                 \T1/pcr/m/n/9 rmap=list(sex=sex, age=age*365.35, year=as.Da
te(\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 1979/01/01\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3590] [3591]
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 [] [] 
[3592] [3593]
Overfull \hbox (4.38043pt too wide) in paragraph at lines 3908--3908
 []\T1/pcr/m/n/9 # surprise) but their rates of conversion to PCM are essential
ly the same.[] 
[3594] [3595] [3596] [3597] [3598] [3599] [3600]
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 []                    \T1/pcr/m/n/9 entry.dt = as.Date(paste("2011", 1:10, "5"
, sep=\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 -\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )))[] 
[3601] [3602]
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 []\T1/pcr/m/n/9 tdata <- data.frame(x= lung$age, y = 10*log(lung$age-35) + rno
rm(228, 0, 2))[] 
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 []\T1/pcr/m/n/9 knots <- unlist(attributes(fit1$model[[2]])[c(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 Boundary.knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 , \TS1/pcr/m/n/9 '\T1
/pcr/m/n/9 knots\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )])[] 
Overfull \hbox (4.38043pt too wide) in paragraph at lines 4503--4503
 []\T1/pcr/m/n/9 unname(coef(fit1)[-1] - coef(fit1)[1])  # differences: yhat[2:
4] - yhat[1][] 
[3603]
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[3605] [3606] [3607] [3608] [3609]
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 [] \T1/pcr/m/n/10 pch=3, col=1, lty=1, lwd=1, cex=1, log=FALSE, xscale=1, ysca
le=1,[] 
[3610] [3611] [3612]
Overfull \hbox (24.78088pt too wide) in paragraph at lines 5150--5150
 []\T1/pcr/m/n/10 se.fit=FALSE, na.action=na.pass, terms=names(object$assign), 
collapse,[] 
[3613]
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 []\T1/pcr/m/n/9 mresid <- (lung$status-1) - predict(fit, type=\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 expected\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 ) #Martingale resid[] 
[3614]
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 []  \T1/pcr/m/n/9 predict(fit, reference="sample") + sum(coef(fit) * fit$means
, na.rm=TRUE)[] 
[3615]
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 []\T1/pcr/m/n/9 pct <- 1:98/100   # The 100th percentile of predicted survival
 is at +infinity[] 
[3616]
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 []  \T1/pcr/m/n/10 signif.stars = getOption("show.signif.stars"), expand=FALSE
, ...)[] 
[3617]
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[]\T1/ptm/m/n/10 an ob-ject of class []\T1/pcr/m/n/10 "summary.survfit"[]\T1/pt
m/m/n/10 , which is the re-sult of the
[3618] [3619]
Overfull \hbox (42.78088pt too wide) in paragraph at lines 5646--5646
 []\T1/pcr/m/n/10 pseudo(fit, times, type, addNA=TRUE, data.frame=FALSE, minus1
=FALSE, ...) 
[3620] [3621]
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 []\T1/pcr/m/n/9 rhat <- predict(rfit, newdata=expand.grid(ph.ecog=0:3, sex=1:2
), se.fit=TRUE)[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 5769--5769
 []\T1/pcr/m/n/9 # the estimate for ph.ecog=3 is very unstable (n=1), pseudoval
ues smooth it.[] 
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 []\T1/pcr/m/n/9 # In all the above we should be using the robust variance, e.g
., svyglm, but[] 
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 []\T1/pcr/m/n/10 pspline(x, df=4, theta, nterm=2.5 * df, degree=3, eps=0.1, me
thod, 
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 []   \T1/pcr/m/n/10 Boundary.knots=range(x), intercept=FALSE, penalty=TRUE, co
mbine, ...)[] 
[3622] [3623] [3624]
Overfull \hbox (30.78088pt too wide) in paragraph at lines 5959--5959
 []  \T1/pcr/m/n/10 py <- pyears(futime ~ rx, rmap=list(age=age, sex=sex, year=
entry.dt),[] 
[3625]
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 []\T1/pcr/m/n/9 pfit <- pyears(Surv(ptime/365.25, pstat) ~ temp.yr + temp.age 
+ sex,  mgus,[] 
Overfull \hbox (15.18042pt too wide) in paragraph at lines 6082--6082
 []\T1/pcr/m/n/9 fit1 <- pyears(Surv(stop/365.25, event) ~ cut(age + 48, c(0,50
,60,70,100)) +[] 
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 []\T1/pcr/m/n/9 fit2 <- pyears(Surv(stop/365.25, event) ~ tcut(age + 48, c(0,5
0,60,70,100)) +[] 
[3626] [3627] [3628] [3629]
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[3631] [3632]
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 []       \T1/pcr/m/n/10 collapse=FALSE, weighted= (type %in% c("dfbeta", "dfbe
tas")), ...)[] 
[3633] [3634] [3635]
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 []\T1/pcr/m/n/10 residuals(object, type=c("response", "deviance","dfbeta","dfb
etas",[] 
Underfull \hbox (badness 1043) in paragraph at lines 6743--6746
[]\T1/pcr/m/n/10 "dfbetas"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "working"[]\T1/pt
m/m/n/10 , []\T1/pcr/m/n/10 "ldcase"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "lsresp
"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "ldshape"[]\T1/ptm/m/n/10 , and
[3636] [3637] [3638] [3639]
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 []\T1/pcr/m/n/9 lfit1 <- survreg(Surv(time, status) ~ age + ridge(ph.ecog, the
ta=5), lung)[] 
Overfull \hbox (31.3804pt too wide) in paragraph at lines 7051--7051
 []\T1/pcr/m/n/9 lfit2 <- survreg(Surv(time, status) ~ sex + ridge(age, ph.ecog
, theta=1), lung)[] 
[3640] [3641] [3642]
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 []\T1/pcr/m/n/10 rttright(formula, data, weights, subset, na.action, times, id
, timefix = TRUE) 
[3643]
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 []\T1/pcr/m/n/9 cdf <- cdf[!duplicated(aml$time[index], fromLast=TRUE)]  # rem
ove duplicate times[] 
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 []\T1/pcr/m/n/9 wt2 <- rttright(Surv(dtime, death) ~ hormon, rotterdam, times=
 365*c(3, 5))[] 
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) 
has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7312 ...ata from a soldering experiment}{solder}
                                                   [3644]
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[3645]
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 []\T1/pcr/m/n/10 statefig(layout, connect, margin = 0.03, box = TRUE, cex = 1,
 col = 1, 
[3646] [3647] [3648] [3649] [3650]
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 []\T1/pcr/m/n/10 event = TRUE, pyears = TRUE, expected = TRUE, rate = FALSE, r
r =expected,[] 
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 []\T1/pcr/m/n/10 ci.r = FALSE, ci.rr = FALSE, totals=FALSE, legend = TRUE, vli
ne = FALSE,[] 
[3651] [3652] [3653] [3654] [3655]
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 []    \T1/pcr/m/n/10 type=c(\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 right\TS1/pcr/m/n/
10 '\T1/pcr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 left\TS1/pcr/m/n/10 '\T1/p
cr/m/n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval\TS1/pcr/m/n/10 '\T1/pcr/m/
n/10 , \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 counting\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 
, \TS1/pcr/m/n/10 '\T1/pcr/m/n/10 interval2\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 , \T
S1/pcr/m/n/10 '\T1/pcr/m/n/10 mstate\TS1/pcr/m/n/10 '\T1/pcr/m/n/10 ),[] 
[3656] [3657] [3658]
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[]\T1/ptm/m/n/10 The []\T1/pcr/m/n/10 median[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10
 quantile []\T1/ptm/m/n/10 and []\T1/pcr/m/n/10 plot []\T1/ptm/m/n/10 meth-ods 
first con-struct a sur-vival curve us-ing
[3659] [3660]
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 []\T1/pcr/m/n/10 survcheck(formula, data, subset, na.action, id, istate, istat
e0="(s0)", 
[3661] [3662]
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 []\T1/pcr/m/n/10 survcondense(formula, data, subset, weights, na.action= na.pa
ss, id, 
[3663] [3664] [3665]
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 []                  \T1/pcr/m/n/9 rmap= list(age=(accept.dt - birth.dt), sex=1
, year=accept.dt),[] 
[3666]
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 []        \T1/pcr/m/n/10 method=c("ederer", "hakulinen", "conditional", "indiv
idual.h",[] 
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[]\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre
-dicted sur-vival
[3667]
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 []                      \T1/pcr/m/n/10 rmap = list(year=entry.dt, age=(birth.d
t-entry.dt)),[] 
[3668]
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 []\T1/pcr/m/n/9 summary(fit1, times=1:10*182.5, scale=365) #expected survival 
by 1/2 years[] 
[3669] [3670] [3671]
Underfull \hbox (badness 10000) in paragraph at lines 9257--9262
[][][]\T1/pcr/m/n/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/
10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 survfit.object[][
][][]\T1/ptm/m/n/10 , [][][]\T1/pcr/m/n/10 print.survfit[][][][]\T1/ptm/m/n/10 
,
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 []        \T1/pcr/m/n/10 se.fit=TRUE, conf.int=.95, individual=FALSE, stype=2,
 ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
[3672]
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 []        \T1/pcr/m/n/10 se.fit=FALSE, conf.int=.95, individual=FALSE, stype=2
, ctype,[] 
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 []        \T1/pcr/m/n/10 conf.type=c("log","log-log","plain","none", "logit", 
"arcsin"),[] 
[3673] [3674]
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 []        \T1/pcr/m/n/10 stype=1, ctype=1, id, cluster, robust, istate, timefi
x=TRUE,[] 
[3675] [3676]
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\T1/pcr/m/n/10 ctype=1[]\T1/ptm/m/n/10 , "fleming-harrington" which is equiv-a-
lent to []\T1/pcr/m/n/10 stype=2,
[3677] [3678]
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 []\T1/pcr/m/n/9 #  There are no interval censored subjects, only left-censored
 (status=3),[] 
[3679] [3680] [3681] [3682] [3683]
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 []\T1/pcr/m/n/10 survfitcoxph.fit(y, x, wt, x2, risk, newrisk, strata, se.fit,
 survtype, 
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[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
[3684]
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 []\T1/pcr/m/n/10 survConcordance(formula, data, weights, subset, na.action) # 
use concordance 
[3685] [3686]
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\T1/ptm/m/n/10 it is as-sumed to name an el-e-ment from [][][]\T1/pcr/m/n/10 su
rvreg.distributions[][][][]\T1/ptm/m/n/10 .
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\T1/ptm/m/n/10 These in-clude []\T1/pcr/m/n/10 "weibull"[]\T1/ptm/m/n/10 , []\T
1/pcr/m/n/10 "exponential"[]\T1/ptm/m/n/10 , []\T1/pcr/m/n/10 "gaussian"[]\T1/p
tm/m/n/10 ,
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[]\T1/pcr/m/n/10 "logistic"[]\T1/ptm/m/n/10 ,[]\T1/pcr/m/n/10 "lognormal" []\T1
/ptm/m/n/10 and []\T1/pcr/m/n/10 "loglogistic"[]\T1/ptm/m/n/10 . Oth-er-wise, i
t is
[3687] [3688]
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 []\T1/pcr/m/n/9 # There are multiple ways to parameterize a Weibull distributi
on. The survreg[] 
[3689] [3690]
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 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3691] [3692]
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 []                            \T1/pcr/m/n/9 temp/pi, -2 *x*temp, 2*temp^2*(4*x
^2*temp -1))[] 
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 []                 \T1/pcr/m/n/9 deviance= function(...) stop(\TS1/pcr/m/n/9 '
\T1/pcr/m/n/9 deviance residuals not defined\TS1/pcr/m/n/9 '\T1/pcr/m/n/9 )[] 
[3693] [3694] [3695]
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 []\T1/pcr/m/n/9 pfit2 <- pyears(Surv(years, death) ~ fgrp + agegrp, scale =100
0, data=test)[] 
[3696] [3697]
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 []\T1/pcr/m/n/9 # The first data set contains data on 312 subjects in a clinic
al trial plus[] 
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 []\T1/pcr/m/n/9 # 106 that agreed to be followed off protocol, the second data
 set has data[] 
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 []               \T1/pcr/m/n/9 protime = tdc(day, protime), alk.phos = tdc(day
, alk.phos))[] 
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 []\T1/pcr/m/n/9 fit <- coxph(Surv(tstart, tstop, endpt==2) ~ protime + log(bil
i), data=pbc2)[] 
[3698] [3699] [3700] [3701] [3702] [3703] [3704]
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 []\T1/pcr/m/n/10 levels, test = c("global", "trend", "pairwise"), predict = "l
inear",[] 
[3705] [3706] [3707]) [3708] (./fullrefman.ind [3709] [3710] [3711] [3712]
[3713] [3714] [3715] [3716] [3717] [3718] [3719] [3720] [3721] [3722] [3723]
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[]| \T1/pcr/m/n/10 smooth.construct.t2.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.tp.smooth.spec\T1/ptm/m/n/10 , 
[3734] [3735] [3736] [3737] [3738] [3739]
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[]| \T1/pcr/m/n/10 smooth.construct.ad.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.ps.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.re.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.so.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.sos.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.sz.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.t2.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , 
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[]| \T1/pcr/m/n/10 smooth.construct.tp.smooth.spec\T1/ptm/m/n/10 , 
[3740] [3741]
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[]| \T1/pcr/m/n/10 smooth.construct.so.smooth.spec\T1/ptm/m/n/10 , 
[3742] [3743] [3744] [3745] [3746] [3747] [3748] [3749]
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[3750]
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[3751]
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[]\T1/pcr/m/n/10 qr.qty,sparseQR,ddenseMatrix-method 
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@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https://  buildd
.  debian.  org/  build.  php?  &  pkg=r-base[][][]@textrm ),
[3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16]
[17] Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25]
Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37]
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[38] [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46]
[47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
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[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
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[27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35]
[36] Appendix A [37] [38] [39]
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[40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Appendix B [50] [51] [52]
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[61]
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[68] [69] (Function and variable index) [70]
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[73] )
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[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14]
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[27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35]
[36] Appendix A [37] [38] [39]
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[40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Appendix B [50] [51] [52]
[53] [54] Appendix C [55] [56] [57] [58] [59] [60]
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l.5283: Undefined cross reference ` Tcl/Tk headers and libraries-snt'.
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[68] [69] (Function and variable index) [70]
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Chapter 1 [1]
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[17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24]
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(/builddir/build/BUILD/R-rc/doc/manual/R-data.aux) Chapter 1 [1]
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[2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4
[13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21]
[22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27]
(Function and variable index) [28]
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[2] [3] [4] Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4
[13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21]
[22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27]
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Chapter 1 [1]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14]
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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[15] [16] [17]
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 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 
[18]
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 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 
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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[31] [32] [33] [34]
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[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][][] @smallrm or
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17PICFLAGS)")[] 
[35] [36] [37]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] [54] [55]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
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 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[56] [57] [58] [59] [60]
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 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19
 20 21)[] 
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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
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= "."))[] 
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vailable")[] 
[61]
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version 52.0[] 
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 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b
e looked for
[62] [63] [64] [65] [66] [67] [68] [69]
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 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[70] [71] [72] [73] [74] [75]
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[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[][]) and RForge
[76] Chapter 2 [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88]
[89]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[90]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
[91] [92] [93] [94] Chapter 3 [95] [96] [97] [98] [99] [100] [101] [102]
Chapter 4 [103] [104] [105] [106] [107]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[108] [109] [110]
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@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][][]@textrm ,
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  LightningTalks/ 
[111]
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[112]
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[113]
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[114] [115] [116] [117] [118] [119]
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 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
[120] Chapter 5 [121] [122] [123] [124] [125] [126] [127] [128] [129] [130]
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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[131] [132]
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a_omit_xts");[] 
[133] [134] [135] [136] [137]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159]
[160]
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[161]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[162] Chapter 6 [163] [164] [165] [166] [167] [168] [169]
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@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
nce/
[170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
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[185]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [186] [187] Chapter 8 [188] [189] [190]
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tatic libR[] 
[191]
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nst char *);[] 
[192] [193] [194] [195] [196] [197]
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tive in-stall and
[198] [199]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
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sfonts/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
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ic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
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b>
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[2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14]
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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[15] [16] [17]
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, "--no-test-load")[] 
[18]
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, quiet = TRUE)[] 
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
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a07models.o $(SOURCES:.cpp=.o)[] 
[31] [32] [33] [34]
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[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
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[35] [36] [37]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] [54] [55]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
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 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[56] [57] [58] [59] [60]
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 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19
 20 21)[] 
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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
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 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 
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 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
[61]
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 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
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 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b
e looked for
[62] [63] [64] [65] [66] [67] [68] [69]
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 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[70] [71] [72] [73] [74] [75]
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[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[][]) and RForge
[76] Chapter 2 [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88]
[89]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[90]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
[91] [92] [93] [94] Chapter 3 [95] [96] [97] [98] [99] [100] [101] [102]
Chapter 4 [103] [104] [105] [106] [107]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[108] [109] [110]
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@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][][]@textrm ,
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[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/ 
[111]
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odr_violation=0'[] 
[112]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by
[113]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[114] [115] [116] [117] [118] [119]
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on [-Wlto-type-mismatch][] 
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ration [-Wlto-type-mismatch][] 
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ation [-Wlto-type-mismatch][] 
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 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
[120] Chapter 5 [121] [122] [123] [124] [125] [126] [127] [128] [129] [130]
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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[131] [132]
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 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[133] [134] [135] [136] [137]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159]
[160]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[161]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[162] Chapter 6 [163] [164] [165] [166] [167] [168] [169]
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@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
nce/
[170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
Warning: unbalanced parentheses in @def... [180] [181] [182] [183] [184]
[185]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [186] [187] Chapter 8 [188] [189] [190]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[191]
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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[192] [193] [194] [195] [196] [197]
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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[198] [199]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [200]
(/builddir/build/BUILD/R-rc/doc/manual/R-exts.vrs [201] [202] [203] [204])
(Concept index) [205] (/builddir/build/BUILD/R-rc/doc/manual/R-exts.cps
[206]) [207] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/typ
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lic/amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (213 pages, 1044169 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdfetex)
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entering extended mode
(/builddir/build/BUILD/R-rc/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions,
(/builddir/build/BUILD/R-rc/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-exts.vr
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(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
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f-dist/fonts/map/pdftex/updmap/pdftex.map}] [2]
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(/builddir/build/BUILD/R-rc/doc/manual/R-exts.toc)
(/builddir/build/BUILD/R-rc/doc/manual/R-exts.toc) (Acknowledgements)
(/builddir/build/BUILD/R-rc/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14]
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars.ucrt[]@textrm ,
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 @texttt ~/.R/Makevars.win64[]@textrm ,
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@texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_
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 @texttt R_MAKEVARS_USER[]@textrm ,  @texttt ~/.R/Makevars.ucrt[]@textrm ,
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 @texttt ~/.R/Makevars.win64[]@textrm ,
[15] [16] [17]
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 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 
[18]
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 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 
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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[31] [32] [33] [34]
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[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][][] @smallrm or
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 []            @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX
17PICFLAGS)")[] 
[35] [36] [37]
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 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin
/cmake; fi[] 
[38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52]
[53] [54] [55]
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 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
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 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[56] [57] [58] [59] [60]
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 []@texttt 1.1 1.2 1.3 1.4 5.0 6 7 8 9 10 11 12 13 14 15 16 17 18 (announced 19
 20 21)[] 
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 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
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 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 
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 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
[61]
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 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
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 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b
e looked for
[62] [63] [64] [65] [66] [67] [68] [69]
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 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[70] [71] [72] [73] [74] [75]
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[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[][]) and RForge
[76] Chapter 2 [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88]
[89]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[90]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
[91] [92] [93] [94] Chapter 3 [95] [96] [97] [98] [99] [100] [101] [102]
Chapter 4 [103] [104] [105] [106] [107]
Underfull \hbox (badness 10000) in paragraph at lines 9279--9288
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[108] [109] [110]
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@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][][]@textrm ,
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[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/ 
[111]
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 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 
[112]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by
[113]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[114] [115] [116] [117] [118] [119]
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 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][] 
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ration [-Wlto-type-mismatch][] 
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 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar
ation [-Wlto-type-mismatch][] 
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 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
[120] Chapter 5 [121] [122] [123] [124] [125] [126] [127] [128] [129] [130]
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 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[131] [132]
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 []  @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n
a_omit_xts");[] 
[133] [134] [135] [136] [137]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159]
[160]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[161]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[162] Chapter 6 [163] [164] [165] [166] [167] [168] [169]
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@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
nce/
[170] [171] [172] [173] [174] [175] [176] [177] [178] [179]
Warning: unbalanced parentheses in @def... [180] [181] [182] [183] [184]
[185]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [186] [187] Chapter 8 [188] [189] [190]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[191]
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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[192] [193] [194] [195] [196] [197]
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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[198] [199]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [200]
(/builddir/build/BUILD/R-rc/doc/manual/R-exts.vrs [201] [202] [203] [204])
(Concept index) [205] (/builddir/build/BUILD/R-rc/doc/manual/R-exts.cps
[206]) [207] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts
/cm/cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
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f-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13]
[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-rc/doc/manual/images/hist.pdf> [34] </builddir/build/BUILD
/R-rc/doc/manual/images/ecdf.pdf> </builddir/build/BUILD/R-rc/doc/manual/images
/QQ.pdf> [35] [36] </builddir/build/BUILD/R-rc/doc/manual/images/ice.pdf>
[37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47]
[48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60]
[61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] </builddir/build/B
UILD/R-rc/doc/manual/images/fig11.pdf> [71] </builddir/build/BUILD/R-rc/doc/man
ual/images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14
[78] [79]
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[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93]
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13]
[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-rc/doc/manual/images/hist.pdf> [34] </builddir/build/BUILD
/R-rc/doc/manual/images/ecdf.pdf> </builddir/build/BUILD/R-rc/doc/manual/images
/QQ.pdf> [35] [36] </builddir/build/BUILD/R-rc/doc/manual/images/ice.pdf>
[37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47]
[48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60]
[61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] </builddir/build/B
UILD/R-rc/doc/manual/images/fig11.pdf> [71] </builddir/build/BUILD/R-rc/doc/man
ual/images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14
[78] [79]
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[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93]
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[96] (/builddir/build/BUILD/R-rc/doc/manual/R-intro.cps [97]) Appendix F
[98] [99] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
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(/builddir/build/BUILD/R-rc/doc/manual/R-intro.toc) (Preface)
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[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13]
[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-rc/doc/manual/images/hist.pdf> [34] </builddir/build/BUILD
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[37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47]
[48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60]
[61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] </builddir/build/B
UILD/R-rc/doc/manual/images/fig11.pdf> [71] </builddir/build/BUILD/R-rc/doc/man
ual/images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14
[78] [79]
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[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93]
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[96] (/builddir/build/BUILD/R-rc/doc/manual/R-intro.cps [97]) Appendix F
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi
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[17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27]
[28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36]
[37] [38] [39] [40] [41] [42] [43] Chapter 7 [44]
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@textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal
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[45] Chapter 8 [46] [47]
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[48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60]
Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64]
(Function and variable index) [65]
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[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
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atrix 1.2-6[] 
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ics with methods[] 
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(group)generic[] 
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 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27]
[28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36]
[37] [38] [39] [40] [41] [42] [43] Chapter 7 [44]
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ly,
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@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link, as
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@textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re-
solves to
[45] Chapter 8 [46] [47]
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 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c
hoice of
[48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60]
Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64]
(Function and variable index) [65]
(/builddir/build/BUILD/R-rc/doc/manual/R-ints.vrs [66]) (Concept index)
[67] (/builddir/build/BUILD/R-rc/doc/manual/R-ints.cps) [68] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></u
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exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
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[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
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 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 
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 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 
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 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 
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 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27]
[28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36]
[37] [38] [39] [40] [41] [42] [43] Chapter 7 [44]
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@textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal
ly,
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@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link, as
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@textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re-
solves to
[45] Chapter 8 [46] [47]
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 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c
hoice of
[48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60]
Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64]
(Function and variable index) [65]
(/builddir/build/BUILD/R-rc/doc/manual/R-ints.vrs [66]) (Concept index)
[67] (/builddir/build/BUILD/R-rc/doc/manual/R-ints.cps) [68] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
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exmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-d
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
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[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
Underfull \hbox (badness 10000) in paragraph at lines 4356--4358
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51]
No file R-lang.vrs.
(Concept Index) [52]
No file R-lang.cps.
Appendix A [53] [54] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/t
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[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
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[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51]
(/builddir/build/BUILD/R-rc/doc/manual/R-lang.vrs [52]) (Concept Index)
[53] (/builddir/build/BUILD/R-rc/doc/manual/R-lang.cps) Appendix A [54]
[55] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
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[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
Underfull \hbox (badness 10000) in paragraph at lines 4356--4358
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51]
(/builddir/build/BUILD/R-rc/doc/manual/R-lang.vrs [52]) (Concept Index)
[53] (/builddir/build/BUILD/R-rc/doc/manual/R-lang.cps) Appendix A [54]
[55] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
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+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/FAQ.utf8 doc/FAQ
+ mv doc/FAQ.utf8 doc/FAQ
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-admin.info.utf8 doc/manual/R-admin.info
+ mv doc/manual/R-admin.info.utf8 doc/manual/R-admin.info
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1
+ mv doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.0v07yz
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
++ dirname /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
+ cd R-rc
+ make DESTDIR=/builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le install install-pdf install-info
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R
make[1]: Entering directory '/builddir/build/BUILD/R-rc/m4'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/m4'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/tools'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/tools'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/doc'
installing doc ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/doc/R
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/man/man1
make[2]: Entering directory '/builddir/build/BUILD/R-rc/doc/html'
installing doc/html ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/doc/R/html
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/doc/html'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/doc/manual'
installing doc/manual ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/doc/R/manual
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/doc/R/manual/images
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/etc'
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/etc
installing etc ...
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/etc'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/share'
installing share ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/R
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/dictionaries
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/encodings
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/java
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/licenses
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/make
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/Rd
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/Rd/macros
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/sh
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/texmf
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/texmf/bibtex/bib
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/texmf/bibtex/bst
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/texmf/tex/latex
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/share'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/scripts'
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/bin
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/scripts'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/include'
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/include/R
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/include/R_ext'
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/include/R/R_ext
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/include/R_ext'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/include'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/extra'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/extra/blas'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/extra/blas'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/extra/tre'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/extra/tre'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/extra/tzone'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/extra/tzone'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/extra/xdr'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/extra/xdr'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/extra/intl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/extra/intl'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/extra'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/appl'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/appl'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/nmath'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/nmath'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/unix'
gcc -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power9 -mtune=power9 -fasynchronous-unwind-tables -fstack-clash-protection -flto -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -DR_HOME='"/usr/lib64/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/pkgconfig
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/unix'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/main'
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/exec
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/main'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/main'
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/lib
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/main'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/main'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/modules'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/internet'
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/modules
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/internet'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/lapack'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/lapack'
make[3]: Entering directory '/builddir/build/BUILD/R-rc/src/modules/X11'
make[3]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules/X11'
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/modules'
make[2]: Entering directory '/builddir/build/BUILD/R-rc/src/library'
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library
installing packages ...
  building HTML index ...
make[2]: Leaving directory '/builddir/build/BUILD/R-rc/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/src'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/tests'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/tests'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/doc/manual'
installing R manuals in PDF format ...
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/doc/manual'
make[1]: Entering directory '/builddir/build/BUILD/R-rc/doc/manual'
mkdir -p -- /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/info"
installing R info pages ...
updating '/usr/share/info/dir' ...
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/doc/manual'
+ rm -f /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/info/dir
+ mkdir -p /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/doc/R
+ install -p CAPABILITIES /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/doc/R
+ cd src/nmath/standalone
+ make install DESTDIR=/builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
make[1]: Entering directory '/builddir/build/BUILD/R-rc/src/include'
make[1]: 'Rmath.h' is up to date.
make[1]: Leaving directory '/builddir/build/BUILD/R-rc/src/include'
+ mkdir -p /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/etc/ld.so.conf.d
+ echo /usr/lib64/R/lib
+ mkdir -p /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/library
+ touch -r README /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/doc/R/CAPABILITIES
+ touch -r README doc/manual/R-FAQ.pdf doc/manual/R-admin.pdf doc/manual/R-data.pdf doc/manual/R-exts.pdf doc/manual/R-intro.pdf doc/manual/R-ints.pdf doc/manual/R-lang.pdf doc/manual/fullrefman.pdf
+ touch -r README /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/bin/R
+ sed -i 's|\..\/\..|/usr/lib64/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/doc/R/html/packages.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/KernSmooth/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/KernSmooth/html/bkde.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/KernSmooth/html/bkde2D.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/KernSmooth/html/bkfe.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/KernSmooth/html/dpih.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/KernSmooth/html/dpik.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/KernSmooth/html/dpill.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/KernSmooth/html/locpoly.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Aids2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Animals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Boston.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Cars93.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Cushings.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/DDT.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/GAGurine.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Insurance.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/MASS-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Melanoma.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Null.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/OME.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Pima.tr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Rabbit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Rubber.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/SP500.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Sitka.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Sitka89.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Skye.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/Traffic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/UScereal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/UScrime.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/VA.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/abbey.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/accdeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/addterm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/anorexia.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/anova.negbin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/area.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/bacteria.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/bandwidth.nrd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/bcv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/beav1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/beav2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/biopsy.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/birthwt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/boxcox.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/cabbages.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/caith.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/cats.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/cement.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/chem.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/con2tr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/confint.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/contr.sdif.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/coop.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/corresp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/cov.rob.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/cov.trob.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/cpus.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/crabs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/deaths.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/denumerate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/dose.p.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/drivers.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/dropterm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/eagles.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/epil.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/eqscplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/farms.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/fgl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/fitdistr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/forbes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/fractions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/galaxies.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/gamma.dispersion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/gamma.shape.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/gehan.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/genotype.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/geyser.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/gilgais.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/ginv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/glm.convert.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/glm.nb.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/glmmPQL.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/hills.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/hist.scott.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/housing.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/huber.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/hubers.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/immer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/isoMDS.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/kde2d.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/lda.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/ldahist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/leuk.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/lm.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/lm.ridge.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/loglm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/loglm1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/logtrans.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/lqs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/mammals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/mca.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/mcycle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/menarche.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/michelson.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/minn38.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/motors.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/muscle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/mvrnorm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/negative.binomial.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/newcomb.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/nlschools.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/npk.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/npr1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/oats.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/painters.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/pairs.lda.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/parcoord.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/petrol.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/phones.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/plot.lda.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/plot.mca.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/plot.profile.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/polr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/predict.glmmPQL.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/predict.lda.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/predict.lqs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/predict.mca.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/predict.qda.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/profile.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/qda.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/quine.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/rational.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/renumerate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/rlm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/rms.curv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/rnegbin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/road.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/rotifer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/sammon.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/ships.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/shoes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/shrimp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/shuttle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/snails.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/stdres.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/steam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/stepAIC.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/stormer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/studres.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/summary.loglm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/summary.negbin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/summary.rlm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/survey.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/synth.tr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/theta.md.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/topo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/truehist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/ucv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/waders.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/whiteside.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/width.SJ.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/write.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/html/wtloss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/BunchKaufman-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/CAex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/CHMfactor-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Cholesky-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Cholesky.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/CsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Diagonal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Hilbert.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/KNex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/KhatriRao.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/LU-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Matrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Matrix-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Matrix-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/MatrixClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/MatrixFactorization-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/RsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Schur-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Schur.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/SparseM-conv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Subassign-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/TsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/USCounties.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/Xtrct-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/abIndex-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/abIseq.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/all-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/all.equal-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/atomicVector-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/band.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/bandSparse.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/bdiag.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/boolean-matprod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/cBind.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/chol.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/chol2inv-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/colSums.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/compMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/condest.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/ddenseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/ddiMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/denseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dgCMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dgRMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dgTMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dgeMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/diagU2N.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/diagonalMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dimScale.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dmperm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dpoMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/drop0.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dsCMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dsRMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dsparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dsyMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dtCMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dtRMatrix-class-def.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dtpMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/dtrMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/expand.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/expm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/externalFormats.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/facmul.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/fastMisc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/forceSymmetric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/formatSparseM.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/generalMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/graph2T.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/image-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/indMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/index-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/invPerm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/is.na-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/is.null.DN.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/isSymmetric-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/isTriangular.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/kronecker-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/ldenseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/ldiMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/lgeMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/lsparseMatrix-classes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/lsyMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/ltrMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/lu.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/mat2triplet.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/matrix-products.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/nMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/ndenseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/nearPD.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/ngeMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/nnzero.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/norm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/nsparseMatrix-classes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/nsyMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/ntrMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/number-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/pMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/packedMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/printSpMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/qr-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/rankMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/rcond.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/rep2abI.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/replValue-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/rleDiff-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/rsparsematrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/solve-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/spMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/sparse.model.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/sparseLU-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/sparseMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/sparseMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/sparseQR-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/sparseVector-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/sparseVector.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/symmetricMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/symmpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/triangularMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/uniqTsparse.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/unpack.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/unpackedMatrix-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/unused-classes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/updown.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/html/wrld_1deg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Arithmetic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/AsIs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Bessel.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/CallExternal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Colon.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Comparison.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Constants.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Control.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Cstack_info.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/DateTimeClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Dates.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Encoding.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/EnvVar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Extract.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Extract.factor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Extract.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Extremes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Foreign-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Foreign.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Hyperbolic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/ISOdatetime.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/InternalMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/La_library.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/La_version.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Last.value.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Log.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Logic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/LongVectors.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/MathFun.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Memory-limits.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Memory.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/NA.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/NULL.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/NumericConstants.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Ops.Date.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Paren.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Platform.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Primitive.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Quotes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Random-user.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Random.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/RdUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Recall.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Reserved.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Rhome.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Round.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/S3method.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Signals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Special.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/StackOverflows.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Startup.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Syntax.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.getenv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.getpid.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.glob.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.info.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.localeconv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.readlink.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.setFileTime.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.setenv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.sleep.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.time.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Sys.which.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Trig.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/UTF8filepaths.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/UseMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Vectorize.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/Version.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/abbreviate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/agrep.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/all.equal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/all.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/allnames.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/any.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/aperm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/append.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/apply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/args.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/array.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/array2DF.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/as.Date.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/as.POSIXlt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/as.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/as.environment.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/as.function.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/asplit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/assign.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/assignOps.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/attach.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/attr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/attributes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/autoload.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/backsolve.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/balancePOSIXlt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/base-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/base-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/base-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/base-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/basename.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/bincode.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/bindenv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/bitwise.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/body.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/bquote.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/browser.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/browserText.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/builtins.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/by.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/c.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/call.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/callCC.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/capabilities.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/cat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/cbind.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/char.expand.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/character.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/charmatch.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/chartr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/chkDots.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/chol.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/chol2inv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/chooseOpsMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/col.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/colSums.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/colnames.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/commandArgs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/comment.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/complex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/conditions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/conflicts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/connections.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/contributors.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/copyright.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/crossprod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/cumsum.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/curlGetHeaders.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/cut.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/cut.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/data.class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/data.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dataframeHelpers.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/date.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dcf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/debug.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/delayedAssign.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/deparse.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/deparseOpts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/det.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/detach.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dev.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/diag.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/diff.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/difftime.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dim.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dimnames.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/do.call.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dontCheck.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dots.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/double.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dput.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/drop.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/droplevels.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dump.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/duplicated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/dynload.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/eapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/eigen.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/encodeString.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/environment.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/eval.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/exists.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/expand.grid.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/expression.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/extSoftVersion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/factor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/file.access.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/file.choose.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/file.info.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/file.path.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/file.show.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/files.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/files2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/find.package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/findInterval.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/force.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/forceAndCall.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/formals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/format.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/format.info.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/format.pval.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/formatDL.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/formatc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/function.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/funprog.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/gc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/gc.time.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/gctorture.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/get.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/getCallingDLL.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/getDLLRegisteredRoutines.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/getLoadedDLLs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/getNativeSymbolInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/gettext.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/getwd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/gl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/grep.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/grepRaw.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/groupGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/grouping.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/gzcon.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/hexmode.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/iconv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/icuSetCollate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/identical.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/identity.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/ifelse.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/integer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/interaction.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/interactive.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/invisible.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/is.finite.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/is.function.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/is.language.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/is.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/is.recursive.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/is.single.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/is.unsorted.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/isR.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/isS4.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/isSymmetric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/jitter.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/kappa.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/kronecker.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/l10n_info.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/labels.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/lapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/lazyload.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/length.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/lengths.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/levels.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/libPaths.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/libcurlVersion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/library.dynam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/library.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/license.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/list.files.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/list.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/list2DF.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/list2env.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/load.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/locales.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/logical.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/lower.tri.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/ls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/make.names.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/make.unique.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/mapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/marginSums.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/mat.or.vec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/match.arg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/match.call.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/match.fun.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/match.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/matmult.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/maxCol.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/mean.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/memCompress.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/memlimits.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/memory.profile.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/merge.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/message.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/missing.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/mode.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/mtfrm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/name.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/names.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/nargs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/nchar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/nlevels.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/noquote.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/norm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/normalizePath.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/notyet.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/nrow.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/ns-dblcolon.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/ns-hooks.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/ns-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/ns-load.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/ns-reflect.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/ns-topenv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/numeric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/numeric_version.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/octmode.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/on.exit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/options.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/order.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/outer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/parse.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/paste.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/path.expand.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/pcre_config.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/pipeOp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/plot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/pmatch.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/polyroot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/pos.to.env.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/pretty.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/print.dataframe.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/print.default.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/print.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/prmatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/proc.time.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/prod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/proportions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/pushBack.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/qr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/qraux.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/quit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/range.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/rank.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/rapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/raw.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/rawConnection.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/rawConversion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/readBin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/readChar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/readLines.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/readRDS.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/readRenviron.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/readline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/reg.finalizer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/regex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/regmatches.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/rep.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/replace.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/rev.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/rle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/rm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/round.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/row.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/row.names.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/rowsum.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sQuote.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sample.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/save.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/scale.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/scan.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/search.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/seek.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/seq.Date.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/seq.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/seq.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sequence.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/serialize.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/setTimeLimit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sets.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/shQuote.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/showConnections.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sign.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sink.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/slice.index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/slotOp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/socketSelect.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/solve.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sort.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/source.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/split.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sprintf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/srcfile.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/standardGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/startsWith.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/stop.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/stopifnot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/strptime.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/strrep.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/strsplit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/strtoi.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/strtrim.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/structure.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/strwrap.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/subset.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/substitute.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/substr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sum.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/summary.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/svd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sweep.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/switch.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sys.parent.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/sys.source.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/system.file.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/system.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/system.time.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/system2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/t.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/table.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/tabulate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/tapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/taskCallback.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/taskCallbackManager.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/taskCallbackNames.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/tempfile.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/textconnections.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/tilde.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/timezones.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/toString.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/trace.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/traceback.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/tracemem.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/transform.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/trimws.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/try.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/typeof.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/unique.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/units.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/unlink.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/unlist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/unname.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/userhooks.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/utf8Conversion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/validUTF8.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/vector.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/warning.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/warnings.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/weekday.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/which.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/which.min.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/with.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/withVisible.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/write.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/writeLines.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/xtfrm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/zMachine.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/zScript.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/zapsmall.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/zpackages.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/base/html/zutils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/EEF.profile.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/Imp.Estimates.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/abc.ci.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/acme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/aids.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/aircondit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/amis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/aml.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/beaver.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/bigcity.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/boot-practicals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/boot.array.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/boot.ci.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/boot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/brambles.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/breslow.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/calcium.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/cane.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/capability.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/catsM.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/cav.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/cd4.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/cd4.nested.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/censboot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/channing.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/claridge.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/cloth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/co.transfer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/coal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/control.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/corr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/cum3.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/cv.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/darwin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/dogs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/downs.bc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/ducks.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/empinf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/envelope.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/exp.tilt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/fir.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/freq.array.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/frets.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/glm.diag.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/glm.diag.plots.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/gravity.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/hirose.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/imp.weights.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/inv.logit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/islay.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/jack.after.boot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/k3.linear.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/linear.approx.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/lines.saddle.distn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/logit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/manaus.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/melanoma.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/motor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/neuro.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/nitrofen.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/nodal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/norm.ci.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/nuclear.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/paulsen.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/plot.boot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/poisons.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/polar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/print.boot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/print.bootci.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/print.saddle.distn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/print.simplex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/remission.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/saddle.distn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/saddle.distn.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/saddle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/salinity.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/simplex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/simplex.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/smooth.f.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/sunspot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/survival.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/tau.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/tilt.boot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/tsboot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/tuna.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/urine.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/var.linear.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/boot/html/wool.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/SOM.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/batchSOM.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/condense.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/knn.cv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/knn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/knn1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/lvq1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/lvq2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/lvq3.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/lvqinit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/lvqtest.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/multiedit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/olvq1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/reduce.nn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/class/html/somgrid.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/agnes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/agnes.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/agriculture.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/animals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/bannerplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/chorSub.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/clara.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/clara.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/clusGap.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/clusplot.default.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/clusplot.partition.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/cluster-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/coef.hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/daisy.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/diana.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/dissimilarity.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/ellipsoidhull.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/fanny.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/fanny.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/flower.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/lower.to.upper.tri.inds.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/medoids.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/mona.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/mona.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/pam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/pam.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/partition.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/plantTraits.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/plot.agnes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/plot.diana.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/plot.mona.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/plot.partition.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/pltree.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/pluton.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/predict.ellipsoid.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/print.agnes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/print.clara.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/print.diana.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/print.dissimilarity.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/print.fanny.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/print.mona.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/print.pam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/ruspini.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/silhouette.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/sizeDiss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/summary.agnes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/summary.clara.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/summary.diana.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/summary.mona.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/summary.pam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/twins.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/volume.ellipsoid.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/votes.repub.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/html/xclara.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/codetools/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/codetools/html/checkUsage.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/codetools/html/codetools.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/codetools/html/findGlobals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/codetools/html/showTree.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/compiler/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/compiler/html/compile.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/AirPassengers.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/BJsales.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/BOD.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/ChickWeight.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/DNase.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/EuStockMarkets.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Formaldehyde.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/HairEyeColor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Harman23.cor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Harman74.cor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Indometh.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/InsectSprays.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/JohnsonJohnson.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/LakeHuron.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/LifeCycleSavings.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Loblolly.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Nile.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Orange.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/OrchardSprays.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/PlantGrowth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Puromycin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Theoph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/Titanic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/ToothGrowth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/UCBAdmissions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/UKDriverDeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/UKLungDeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/UKgas.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/USAccDeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/USArrests.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/USJudgeRatings.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/USPersonalExpenditure.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/VADeaths.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/WWWusage.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/WorldPhones.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/ability.cov.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/airmiles.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/airquality.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/anscombe.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/attenu.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/attitude.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/austres.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/beavers.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/cars.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/chickwts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/co2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/crimtab.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/datasets-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/discoveries.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/esoph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/euro.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/eurodist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/faithful.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/freeny.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/infert.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/iris.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/islands.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/lh.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/longley.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/lynx.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/morley.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/mtcars.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/nhtemp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/nottem.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/npk.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/occupationalStatus.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/precip.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/presidents.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/pressure.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/quakes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/randu.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/rivers.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/rock.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/sleep.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/stackloss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/state.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/sunspot.month.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/sunspot.year.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/sunspots.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/swiss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/treering.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/trees.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/uspop.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/volcano.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/warpbreaks.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/women.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/datasets/html/zCO2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/lookup.xport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.S.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.arff.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.dbf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.dta.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.epiinfo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.mtp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.octave.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.spss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.ssd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.systat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/read.xport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/write.arff.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/write.dbf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/write.dta.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/foreign/html/write.foreign.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/Devices.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/Hershey.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/Japanese.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/Type1Font.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/adjustcolor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/as.graphicsAnnot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/as.raster.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/axisTicks.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/boxplot.stats.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/bringToTop.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/cairo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/cairoSymbolFont.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/check.options.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/chull.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/cm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/col2rgb.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/colorRamp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/colors.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/contourLines.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/convertColor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/densCols.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/dev.capabilities.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/dev.capture.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/dev.flush.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/dev.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/dev.interactive.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/dev.size.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/dev2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/dev2bitmap.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/devAskNewPage.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/embedFonts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/extendrange.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/getGraphicsEvent.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/glyphInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/grDevices-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/grDevices-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/grSoftVersion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/gray.colors.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/gray.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/hcl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/hsv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/make.rgb.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/msgWindow.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/n2mfrow.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/nclass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/palette.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/palettes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/pdf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/pdf.options.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/pictex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/plotmath.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/png.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/postscript.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/postscriptFonts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/pretty.Date.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/ps.options.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/quartz.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/quartzFonts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/recordGraphics.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/recordplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/rgb.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/rgb2hsv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/savePlot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/trans3d.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/windows.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/windows.options.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/windowsFonts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/x11.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/x11Fonts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/xfig.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/xy.coords.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/xyTable.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grDevices/html/xyz.coords.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/abline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/arrows.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/assocplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/axTicks.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/axis.POSIXct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/axis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/barplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/box.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/boxplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/boxplot.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/bxp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/cdplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/clip.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/contour.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/convertXY.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/coplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/curve.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/dotchart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/filled.contour.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/fourfoldplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/graphics-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/graphics-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/grid.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/hist.POSIXt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/hist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/identify.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/image.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/layout.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/legend.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/lines.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/locator.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/matplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/mosaicplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/mtext.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/pairs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/panel.smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/par.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/persp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/pie.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plot.dataframe.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plot.default.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plot.design.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plot.factor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plot.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plot.raster.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plot.table.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plot.window.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plot.xy.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/plothistogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/points.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/polygon.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/polypath.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/rasterImage.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/rect.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/rug.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/screen.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/segments.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/smoothScatter.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/spineplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/stars.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/stem.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/stripchart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/strwidth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/sunflowerplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/symbols.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/text.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/title.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/units.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/xspline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/graphics/html/zAxis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/Grid.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/absolute.size.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/arrow.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/as.mask.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/calcStringMetric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/current.viewport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/dataViewport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/depth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/deviceLoc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/drawDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/editDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/editViewport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/explode.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/gEdit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/gPath.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/getNames.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/gpar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.DLapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.add.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.bezier.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.cap.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.circle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.clip.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.convert.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.copy.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.curve.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.delay.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.display.list.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.draw.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.edit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.force.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.function.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.get.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.glyph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.grab.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.grep.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.grill.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.grob.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.group.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.layout.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.lines.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.locator.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.ls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.move.to.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.newpage.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.null.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.pack.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.path.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.place.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.plot.and.legend.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.points.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.polygon.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.pretty.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.raster.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.record.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.rect.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.refresh.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.remove.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.reorder.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.roundrect.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.segments.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.set.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.show.layout.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.show.viewport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.stroke.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.text.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.xaxis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.xspline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grid.yaxis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/gridCoords.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grobCoords.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grobName.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grobWidth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/grobX.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/legendGrob.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/makeContent.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/patterns.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/plotViewport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/resolveRasterSize.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/showGrob.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/showViewport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/stringWidth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/unit.c.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/unit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/unit.length.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/unit.pmin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/unit.rep.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/unitType.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/valid.just.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/validDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/viewport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/viewportTransform.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/viewports.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/vpPath.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/widthDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/xDetails.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/grid/html/xsplinePoints.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/Lattice.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/Rows.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/USMortality.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/axis.default.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/banking.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/barchart.table.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/barley.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/cloud.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/draw.colorkey.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/draw.key.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/environmental.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/ethanol.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/histogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/interaction.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/lattice.options.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/latticeParseFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/level.colors.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/levelplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/llines.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/lset.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/make.groups.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/melanoma.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/oneway.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/packet.panel.default.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.axis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.barchart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.bwplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.cloud.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.densityplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.dotplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.functions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.histogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.levelplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.loess.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.number.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.pairs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.parallel.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.qqmath.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.qqmathline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.smoothScatter.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.spline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.stripplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.superpose.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.violin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/panel.xyplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/prepanel.default.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/prepanel.functions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/print.trellis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/qq.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/qqmath.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/rfs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/shingles.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/simpleKey.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/simpleTheme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/singer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/splom.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/standard.theme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/strip.default.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/tmd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/trellis.device.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/trellis.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/trellis.par.get.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/update.trellis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/utilities.3d.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/xyplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/lattice/html/xyplot.ts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/BasicClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/Classes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/Classes_Details.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/Documentation.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/EmptyMethodsList-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/EnvironmentClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/GenericFunctions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/Introduction.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/LanguageClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/LinearMethodsList-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/MethodDefinition-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/MethodSupport.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/MethodWithNext-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/Methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/MethodsList-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/MethodsList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/Methods_Details.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/Methods_for_Nongenerics.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/Methods_for_S3.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/NextMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/ObjectsWithPackage-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/RClassUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/RMethodUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/S3Part.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/S4groupGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/SClassExtension-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/StructureClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/TraceClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/as.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/callGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/canCoerce.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/cbind2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/className.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/classRepresentation-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/classesToAM.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/dotsMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/evalSource.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/findClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/findMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/fixPrevious.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/genericFunction-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/getClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/getMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/getPackageName.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/hasArg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/implicitGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/inheritedSlotNames.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/initialize-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/is.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/isSealedMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/languageEl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/localRefClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/method.skeleton.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/methodUtilities.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/methods-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/methods-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/methods-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/new.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/nonStructure-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/promptClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/promptMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/refClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/removeMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/representation.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/selectSuperClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setAs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setClassUnion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setGroupGeneric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setIs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setLoadActions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setMethod.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setOldClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/setSClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/show.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/showMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/signature-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/slot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/stdRefClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/substituteDirect.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/testInheritedMethods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/validObject.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/methods/html/zBasicFunsList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/Beta.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/FFdes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/Predict.matrix.cr.smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/Predict.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/Predict.matrix.soap.film.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/Rrank.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/Sl.initial.repara.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/Sl.repara.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/Sl.setup.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/Tweedie.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/XWXd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/anova.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/bam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/bam.update.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/bandchol.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/blas.thread.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/bug.reports.mgcv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/cSplineDes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/chol.down.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/choose.k.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/cnorm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/columb.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/concurvity.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/coxpht.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/dDeta.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/dpnorm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/exclude.too.far.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/extract.lme.cov.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/factor.smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/family.mgcv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/fix.family.link.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/fixDependence.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/formXtViX.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/formula.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/fs.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/full.score.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.check.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.control.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.convergence.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.fit3.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.fit5.post.proc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.mh.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.models.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.outer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.reparam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.scale.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.selection.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.side.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam.vcomp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gam2objective.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gamObject.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gamSim.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gamlss.etamu.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gamlss.gH.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gamm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gammals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gaulss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/get.var.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gevlss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/ginla.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/gumbls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/identifiability.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/in.out.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/inSide.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/influence.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/initial.sp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/interpret.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/jagam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/k.check.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/ldTweedie.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/ldetS.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/linear.functional.terms.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/logLik.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/ls.size.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/magic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/magic.post.proc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/mgcv-FAQ.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/mgcv-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/mgcv-parallel.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/mini.roots.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/missing.data.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/model.matrix.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/mono.con.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/mroot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/multinom.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/mvn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/negbin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/new.name.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/notExp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/notExp2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/null.space.dimension.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/ocat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/one.se.rule.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/pcls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/pdIdnot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/pdTens.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/pen.edf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/place.knots.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/plot.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/polys.plot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/predict.bam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/predict.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/print.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/psum.chisq.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/qq.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/rTweedie.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/random.effects.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/residuals.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/rig.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/rmvn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/s.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/scat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/sdiag.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/shash.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/single.index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/slanczos.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.ad.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.bs.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.cr.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.ds.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.fs.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.gp.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.mrf.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.ps.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.re.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.so.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.sos.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.sz.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.t2.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.tensor.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.construct.tp.smooth.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.info.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth.terms.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smooth2random.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/smoothCon.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/sp.vcov.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/spasm.construct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/step.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/summary.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/t2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/te.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/tensor.prod.model.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/totalPenaltySpace.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/trichol.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/trind.generator.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/twlss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/uniquecombs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/vcov.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/vis.gam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/ziP.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/html/ziplss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/ACF.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/ACF.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/ACF.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Alfalfa.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Assay.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/BodyWeight.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Cefamandole.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Coef.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Covariate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Covariate.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Dialyzer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Dim.corSpatial.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Dim.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Dim.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Dim.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Earthquake.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Extract.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Fatigue.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Gasoline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Glucose.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Glucose2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Gun.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/IGF.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Initialize.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Initialize.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Initialize.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Initialize.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Initialize.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Initialize.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/LDEsysMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Machines.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/MathAchSchool.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/MathAchieve.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Matrix.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Matrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Meat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Milk.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Muscle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Names.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Names.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Names.pdBlocked.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Names.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Names.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Nitrendipene.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Oats.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Orthodont.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Ovary.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Oxboys.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Oxide.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/PBG.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Phenobarb.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Pixel.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Quinidine.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Rail.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/RatPupWeight.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Relaxin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Remifentanil.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Soybean.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Spruce.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Tetracycline1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Tetracycline2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/VarCorr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.corExp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.corGaus.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.corLin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.corRatio.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.corSpatial.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.corSpher.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.default.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Variogram.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Wafer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Wheat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/Wheat2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/allCoef.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/anova.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/anova.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/as.matrix.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/as.matrix.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/as.matrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/asOneFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/asTable.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/augPred.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/balancedGrouped.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/bdf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/coef.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/coef.gnls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/coef.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/coef.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/coef.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/coef.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/coef.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/coef.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/collapse.groupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/collapse.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/compareFits.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/comparePred.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corAR1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corARMA.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corCAR1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corCompSymm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corExp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corFactor.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corFactor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corGaus.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corLin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corMatrix.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corMatrix.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corMatrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corNatural.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corRatio.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corSpatial.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corSpher.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/corSymm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/ergoStool.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/fdHess.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/fitted.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/fitted.gnlsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/fitted.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/fitted.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/fitted.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/fitted.nlmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/fixed.effects.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/fixef.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/formula.pdBlocked.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/formula.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/formula.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/gapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getCovariate.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getCovariate.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getCovariate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getCovariate.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getCovariateFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getData.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getData.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getData.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getGroups.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getGroups.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getGroups.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getGroups.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getGroups.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getGroups.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getGroups.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getGroupsFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getResponse.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getResponseFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/getVarCov.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/gls-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/glsControl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/glsObject.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/gnls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/gnlsControl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/gnlsObject.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/gnlsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/groupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/gsummary.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/intervals.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/intervals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/intervals.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/intervals.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/isBalanced.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/isInitialized.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/lmList.groupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/lme.groupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/lme.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/lmeControl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/lmeObject.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logDet.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logDet.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logDet.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logDet.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logLik.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logLik.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logLik.gnls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logLik.gnlsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logLik.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logLik.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logLik.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logLik.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/logLik.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/model.matrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/needUpdate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/needUpdate.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/nlme-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/nlme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/nlme.nlsList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/nlmeControl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/nlmeObject.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/nlmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/nlsList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/nlsList.selfStart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pairs.compareFits.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pairs.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pairs.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdBlocked.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdCompSymm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdConstruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdConstruct.pdBlocked.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdDiag.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdFactor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdFactor.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdIdent.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdLogChol.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdMatrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdMatrix.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdNatural.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pdSymm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/phenoModel.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.ACF.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.Variogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.augPred.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.compareFits.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.intervals.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.nffGroupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.nfnGroupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.nmGroupedData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.ranef.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/plot.ranef.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/pooledSD.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/predict.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/predict.gnls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/predict.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/predict.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/predict.nlme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/print.summary.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/print.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/qqnorm.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/qqnorm.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/quinModel.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/random.effects.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/ranef.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/ranef.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/recalc.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/recalc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/recalc.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/recalc.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/recalc.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/residuals.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/residuals.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/residuals.gnlsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/residuals.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/residuals.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/residuals.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/residuals.nlmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/simulate.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/solve.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/solve.reStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/splitFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/summary.corStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/summary.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/summary.lmList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/summary.lme.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/summary.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/summary.nlsList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/summary.pdMat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/summary.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/update.modelStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/update.varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varComb.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varConstPower.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varConstProp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varExp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varFixed.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varFunc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varIdent.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varPower.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varWeights.glsStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varWeights.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nlme/html/varWeights.lmeStruct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nnet/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nnet/html/class.ind.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nnet/html/multinom.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nnet/html/nnet.Hess.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nnet/html/nnet.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nnet/html/predict.nnet.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/nnet/html/which.is.max.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/RngStream.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/children.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/clusterApply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/detectCores.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/makeCluster.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/mcaffinity.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/mcfork.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/mclapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/mcparallel.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/parallel-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/pvec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/parallel/html/splitIndices.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/car.test.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/car90.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/cu.summary.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/kyphosis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/labels.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/meanvar.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/na.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/path.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/plot.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/plotcp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/post.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/predict.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/print.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/printcp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/prune.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/residuals.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/rpart-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/rpart.control.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/rpart.exp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/rpart.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/rsq.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/snip.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/solder.balance.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/stagec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/summary.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/text.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/rpart/html/xpred.rpart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/Kaver.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/Kenvl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/Kfn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/Psim.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/SSI.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/Strauss.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/anova.trls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/correlogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/expcov.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/ppgetregion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/ppinit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/pplik.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/ppregion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/predict.trls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/prmat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/semat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/surf.gls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/surf.ls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/trls.influence.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/trmat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/html/variogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/asVector.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/backSpline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/bs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/interpSpline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/ns.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/periodicSpline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/polySpline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/predict.bSpline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/predict.bs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/splineDesign.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/splineKnots.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/splineOrder.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/splines-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/html/xyVector.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/AIC.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ARMAacf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ARMAtoMA.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Beta.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Binomial.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Cauchy.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Chisquare.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Distributions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Exponential.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Fdist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/GammaDist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Geometric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/HoltWinters.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Hypergeometric.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/IQR.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/KalmanLike.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Logistic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Lognormal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Multinom.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/NLSstAsymptotic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/NLSstClosestX.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/NLSstLfAsymptote.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/NLSstRtAsymptote.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/NegBinomial.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Normal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Pair.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Poisson.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSD.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSasymp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSasympOff.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSasympOrig.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSbiexp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSfol.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSfpl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSgompertz.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSlogis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSmicmen.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SSweibull.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/SignRank.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Smirnov.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/StructTS.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/TDist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Tukey.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/TukeyHSD.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Uniform.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Weibull.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/Wilcoxon.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/acf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/acf2AR.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/add1.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/addmargins.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/aggregate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/alias.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/anova.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/anova.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/anova.lm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/anova.mlm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ansari.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/aov.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/approxfun.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ar.ols.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/arima.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/arima.sim.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/arima0.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/as.hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/asOneSidedFormula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ave.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/bandwidth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/bartlett.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/binom.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/biplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/biplot.princomp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/birthday.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/box.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/cancor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/case.names.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/checkMFClasses.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/chisq.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/cmdscale.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/coef.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/complete.cases.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/confint.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/constrOptim.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/contrast.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/contrasts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/convolve.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/cophenetic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/cor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/cor.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/cov.wt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/cpgram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/cutree.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/decompose.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/delete.response.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/dendrapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/dendrogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/density.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/deriv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/deviance.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/df.residual.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/diffinv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/dist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/dummy.coef.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ecdf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/eff.aovlist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/effects.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/embed.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/expand.model.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/extractAIC.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/factanal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/factor.scope.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/family.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/fft.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/filter.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/fisher.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/fitted.values.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/fivenum.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/fligner.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/formula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/formula.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/friedman.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ftable.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ftable.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/getInitial.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/glm.control.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/glm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/glm.summaries.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/heatmap.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/identify.hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/influence.measures.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/integrate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/interaction.plot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/is.empty.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/isoreg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/kernapply.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/kernel.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/kmeans.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/kruskal.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ks.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ksmooth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/lag.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/lag.plot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/line.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/listof.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/lm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/lm.influence.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/lm.summaries.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/lmfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/loadings.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/loess.control.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/loess.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/logLik.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/loglin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/lowess.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ls.diag.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ls.print.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/lsfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/mad.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/mahalanobis.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/make.link.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/makepredictcall.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/manova.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/mantelhaen.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/mauchly.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/mcnemar.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/median.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/medpolish.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/model.extract.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/model.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/model.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/model.tables.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/monthplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/mood.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/na.action.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/na.contiguous.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/na.fail.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/nafns.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/naprint.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/nextn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/nlm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/nlminb.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/nls.control.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/nls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/nobs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/numericDeriv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/offset.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/oneway.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/optim.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/optimize.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/order.dendrogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/p.adjust.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/pairwise.prop.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/pairwise.t.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/pairwise.table.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/pairwise.wilcox.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.HoltWinters.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.acf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.density.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.isoreg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.lm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.ppr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.profile.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.spec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.stepfun.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/plot.ts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/poisson.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/poly.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/power.anova.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/power.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/power.prop.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/power.t.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/pp.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ppoints.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ppr.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/prcomp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/predict.HoltWinters.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/predict.arima.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/predict.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/predict.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/predict.lm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/predict.loess.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/predict.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/predict.smooth.spline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/preplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/princomp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/print.power.htest.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/print.ts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/printCoefmat.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/profile.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/profile.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/proj.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/prop.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/prop.trend.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/qqnorm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/quade.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/quantile.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/r2dtable.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/rWishart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/read.ftable.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/rect.hclust.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/relevel.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/reorder.dendrogram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/reorder.factor.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/replications.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/reshape.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/residuals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/runmed.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/scatter.smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/screeplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/sd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/se.contrast.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/selfStart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/setNames.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/shapiro.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/sigma.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/simulate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/smooth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/smooth.spline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/smoothEnds.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/sortedXyData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/spec.ar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/spec.pgram.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/spec.taper.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/spectrum.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/splinefun.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/start.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/stat.anova.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/stats-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/stats-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/stats-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/step.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/stepfun.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/stl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/stlmethods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/summary.aov.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/summary.glm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/summary.lm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/summary.manova.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/summary.nls.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/summary.princomp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/supsmu.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/symnum.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/t.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/termplot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/terms.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/terms.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/terms.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/time.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/toeplitz.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ts-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ts.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ts.plot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/ts.union.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/tsSmooth.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/tsdiag.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/tsp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/uniroot.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/update.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/update.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/var.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/varimax.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/vcov.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/weighted.mean.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/weighted.residuals.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/weights.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/wilcox.test.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/window.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/xtabs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/html/zC.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/coef-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/confint-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/logLik-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/mle-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/mle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/plot-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/profile-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/profile.mle-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/show-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/stats4-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/summary-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/summary.mle-class.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/update-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats4/html/vcov-methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/Surv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/Surv2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/Surv2data.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/Survmethods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/aareg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/aeqSurv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/aggregate.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/agreg.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/aml.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/anova.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/attrassign.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/basehaz.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/bladder.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/blogit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/cch.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/cgd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/cgd0.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/cipoisson.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/clogit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/cluster.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/colon.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/concordance.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/concordancefit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/cox.zph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/coxph.control.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/coxph.detail.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/coxph.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/coxph.wtest.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/coxphms.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/coxsurv.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/diabetic.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/dsurvreg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/finegray.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/flchain.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/frailty.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/gbsg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/heart.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/is.ratetable.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/kidney.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/levels.Surv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/lines.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/logLik.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/logan.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/lung.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/mgus.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/mgus2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/model.frame.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/model.matrix.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/myeloid.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/myeloma.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/nafld.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/neardate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/nsk.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/nwtco.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/ovarian.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/pbc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/pbcseq.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/plot.aareg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/plot.cox.zph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/plot.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/predict.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/predict.survreg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/print.aareg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/print.summary.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/print.summary.survexp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/print.summary.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/print.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/pseudo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/pspline.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/pyears.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/quantile.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/ratetable.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/ratetableDate.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/rats.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/rats2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/reliability.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/residuals.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/residuals.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/residuals.survreg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/retinopathy.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/rhDNase.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/ridge.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/rotterdam.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/royston.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/rttright.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/solder.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/stanford2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/statefig.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/strata.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/summary.aareg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/summary.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/summary.pyears.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/summary.survexp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/summary.survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survSplit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survcheck.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survcondense.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survdiff.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survexp.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survexp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survexp.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survexp.us.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survfit.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survfit.formula.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survfit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survfit.matrix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survfit.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survfit0.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survfitcoxph.fit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survival-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survival-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survobrien.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survreg.control.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survreg.distributions.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survreg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survreg.object.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/survregDtest.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/tcut.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/tmerge.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/tobin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/transplant.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/udca.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/untangle.specials.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/uspop2.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/vcov.coxph.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/veteran.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/xtfrm.Surv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/yates.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/html/yates_setup.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/TclInterface.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/TkCommands.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/TkWidgetcmds.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/TkWidgets.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tclServiceMode.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tcltk-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tcltk-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tkProgressBar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tkStartGUI.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tk_choose.dir.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tk_choose.files.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tk_messageBox.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tk_select.list.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/html/tkpager.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/CRANtools.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/HTMLheader.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/HTMLlinks.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/QC.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/Rcmd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/Rd2HTML.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/Rd2txt_options.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/RdTextFilter.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/Rdiff.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/Rdindex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/Rdutils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/SweaveTeXFilter.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/add_datalist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/assertCondition.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/bibstyle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/buildVignette.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/buildVignettes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/charsets.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/checkFF.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/checkMD5sums.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/checkPoFiles.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/checkRd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/checkRdaFiles.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/checkTnF.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/checkVignettes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/check_packages_in_dir.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/codoc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/compactPDF.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/delimMatch.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/dependsOnPkgs.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/encoded.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/fileutils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/find_gs_cmd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/getVignetteInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/loadRdMacros.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/makeLazyLoading.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/make_translations_pkg.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/makevars.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/matchConcordance.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/md5sum.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/package_dependencies.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/package_native_routine_registration_skeleton.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/parseLatex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/parse_Rd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/print.via.format.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/pskill.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/psnice.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/read.00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/showNonASCII.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/startDynamicHelp.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/testInstalledPackage.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/texi2dvi.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/toHTML.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/toRd.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/toTitleCase.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/tools-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/tools-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/tools-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/undoc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/updatePACKAGES.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/update_pkg_po.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/userdir.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/vignetteEngine.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/vignetteInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/writePACKAGES.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/html/xgettext.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/00Index.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/BATCH.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/COMPILE.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/DLL.version.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/INSTALL.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/LINK.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/PkgUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/Question.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/REMOVE.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/RHOME.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/RShowDoc.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/RSiteSearch.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/Rconsole.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/Rprof.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/Rprofmem.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/Rscript.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/Rtangle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/RweaveLatex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/SHLIB.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/Sweave.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/SweaveSyntConv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/SweaveUtils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/URLencode.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/View.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/adist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/alarm.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/apropos.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/aregexec.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/arrangeWindows.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/askYesNo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/aspell-utils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/aspell.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/available.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/bibentry.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/browseEnv.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/browseURL.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/browseVignettes.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/bug.report.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/capture.output.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/changedFiles.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/charClass.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/choose.dir.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/choose.files.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/chooseBioCmirror.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/chooseCRANmirror.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/citEntry.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/citation.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/cite.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/clipboard.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/close.socket.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/combn.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/compareVersion.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/contrib.url.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/count.fields.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/create.post.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/data.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/dataentry.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/debugcall.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/debugger.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/demo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/download.file.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/download.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/edit.data.frame.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/edit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/example.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/file.edit.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/filetest.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/findCRANmirror.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/findLineNum.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/fix.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/flush.console.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/format.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/getAnywhere.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/getFromNamespace.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/getParseData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/getS3method.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/getWindowsHandle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/getWindowsHandles.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/glob2rx.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/globalVariables.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/hasName.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/hashtab.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/head.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/help.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/help.request.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/help.search.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/help.start.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/hsearch-utils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/install.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/installed.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/isS3method.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/isS3stdGen.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/localeToCharset.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/ls_str.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/maintainer.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/make.packages.html.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/make.socket.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/memory.size.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/menu.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/methods.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/mirrorAdmin.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/modifyList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/news.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/nsl.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/object.size.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/package.skeleton.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/packageDescription.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/packageName.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/packageStatus.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/page.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/person.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/personList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/process.events.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/prompt.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/promptData.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/promptPackage.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/rcompgen.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/read.DIF.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/read.fortran.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/read.fwf.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/read.socket.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/read.table.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/readRegistry.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/recover.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/relist.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/remove.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/removeSource.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/roman.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/rtags.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/savehistory.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/select.list.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/sessionInfo.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/setRepositories.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/setWindowTitle.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/shortPathName.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/sourceutils.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/stack.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/str.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/strcapture.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/summaryRprof.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/tar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/toLatex.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/txtProgressBar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/type.convert.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/untar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/unzip.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/update.packages.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/upgrade.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/url.show.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/utils-defunct.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/utils-deprecated.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/utils-internal.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/utils-package.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/vignette.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/warnErrList.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/winDialog.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/winMenus.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/winProgressBar.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/winextras.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/write.table.html
+ for i in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/html/zip.html
+ chmod +x /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/R/sh/echo.sh
+ chmod +x /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/BATCH /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/COMPILE /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/INSTALL /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/LINK /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/R /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/REMOVE /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/Rcmd /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/Rd2pdf /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/Rdconv /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/Rdiff /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/Rprof /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/Rscript /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/SHLIB /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/Stangle /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/Sweave /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/build /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/check /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/config /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/exec /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/javareconf /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/libtool /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/mkinstalldirs /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/pager /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/rtags
+ chmod -x /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/mgcv/CITATION /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/doc/R/CAPABILITIES
+ '[' '!' -d /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/include ']'
+ pushd /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R
~/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R ~/build/BUILD/R-rc
+ ln -s ../../include/R include
~/build/BUILD/R-rc
+ popd
+ for i in tex/latex bibtex/bib bibtex/bst
+ mkdir -p /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/texlive/texmf-dist/tex/latex
+ cd /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/texlive/texmf-dist/tex/latex
+ ln -s /usr/share/R/texmf/tex/latex R
+ for i in tex/latex bibtex/bib bibtex/bst
+ mkdir -p /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/texlive/texmf-dist/bibtex/bib
+ cd /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/texlive/texmf-dist/bibtex/bib
+ ln -s /usr/share/R/texmf/bibtex/bib R
+ for i in tex/latex bibtex/bib bibtex/bst
+ mkdir -p /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/texlive/texmf-dist/bibtex/bst
+ cd /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/texlive/texmf-dist/bibtex/bst
+ ln -s /usr/share/R/texmf/bibtex/bst R
+ /usr/lib/rpm/find-debuginfo.sh -j5 --strict-build-id -m -i --build-id-seed 4.3.0-0.el9~bootstrap.r84280.copr5806616 --unique-debug-suffix -4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le --unique-debug-src-base R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/R-rc
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extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/exec/R
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extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/MASS/libs/MASS.so
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extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/Matrix/libs/Matrix.so
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extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/cluster/libs/cluster.so
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extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/spatial/libs/spatial.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/stats/libs/stats.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/splines/libs/splines.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/libs/survival.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/survival/libs/survival.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/libs/tcltk.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tcltk/libs/tcltk.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/libs/tools.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/tools/libs/tools.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/libs/utils.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/library/utils/libs/utils.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/modules/R_X11.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/modules/R_X11.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/modules/R_de.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/modules/R_de.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/modules/internet.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/modules/internet.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/modules/lapack.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/modules/lapack.so
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/libRmath.so
extracting debug info from /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/libRmath.so
original debug info size: 26688kB, size after compression: 25216kB
/usr/lib/rpm/sepdebugcrcfix: Updated 33 CRC32s, 0 CRC32s did match.
20435 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs --files /usr/lib64/R/bin/
mangling shebang in /usr/bin/R from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/share/R/sh/echo.sh from /bin/sh to #!/usr/bin/sh
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.MyZhgf
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-rc
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Processing files: R-core-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/bin/Rscript and /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib64/R/bin/Rscript
warning: absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bib/R -> /usr/share/R/texmf/bibtex/bib
warning: absolute symlink: /usr/share/texlive/texmf-dist/bibtex/bst/R -> /usr/share/R/texmf/bibtex/bst
warning: absolute symlink: /usr/share/texlive/texmf-dist/tex/latex/R -> /usr/share/R/texmf/tex/latex
Provides: R(ABI) = 4.2 R(ABI) = 4.3 R(KernSmooth) = 2.23.20 R(MASS) = 7.3.58.4 R(Matrix) = 1.5.4 R(base) = 4.3.0 R(boot) = 1.3.28.1 R(class) = 7.3.21 R(cluster) = 2.1.4 R(codetools) = 0.2.19 R(compiler) = 4.3.0 R(datasets) = 4.3.0 R(foreign) = 0.8.84 R(grDevices) = 4.3.0 R(graphics) = 4.3.0 R(grid) = 4.3.0 R(lattice) = 0.21.8 R(methods) = 4.3.0 R(mgcv) = 1.8.42 R(nlme) = 3.1.162 R(nnet) = 7.3.18 R(parallel) = 4.3.0 R(rpart) = 4.1.19 R(spatial) = 7.3.16 R(splines) = 4.3.0 R(stats) = 4.3.0 R(stats4) = 4.3.0 R(survival) = 3.5.5 R(tcltk) = 4.3.0 R(tools) = 4.3.0 R(translations) = 4.3.0 R(utils) = 4.3.0 R-KernSmooth = 2.23.20 R-MASS = 7.3.58.4 R-Matrix = 1.5.4 R-base = 4.3.0 R-boot = 1.3.28.1 R-class = 7.3.21 R-cluster = 2.1.4 R-codetools = 0.2.19 R-compiler = 4.3.0 R-core = 4.3.0-0.el9~bootstrap.r84280.copr5806616 R-core(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616 R-datasets = 4.3.0 R-foreign = 0.8.84 R-grDevices = 4.3.0 R-graphics = 4.3.0 R-grid = 4.3.0 R-lattice = 0.21.8 R-methods = 4.3.0 R-mgcv = 1.8.42 R-nlme = 3.1.162 R-nnet = 7.3.18 R-parallel = 4.3.0 R-rpart = 4.1.19 R-spatial = 7.3.16 R-splines = 4.3.0 R-stats = 4.3.0 R-stats4 = 4.3.0 R-survival = 3.5.5 R-tcltk = 4.3.0 R-tools = 4.3.0 R-translations = 4.3.0 R-utils = 4.3.0 config(R-core) = 4.3.0-0.el9~bootstrap.r84280.copr5806616 libR.so()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /bin/sh /usr/bin/sh ld64.so.2()(64bit) ld64.so.2(GLIBC_2.17)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.67()(64bit) libicuuc.so.67()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre2-8.so.0()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libreadline.so.8()(64bit) libtcl8.6.so()(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) libtirpc.so.3()(64bit) libtirpc.so.3(TIRPC_0.3.0)(64bit) libtk8.6.so()(64bit) libtre.so.5()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Obsoletes: R-Matrix < 0.999375-7
Processing files: R-core-devel-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Provides: R-Matrix-devel = 1.5.4 R-core-devel = 4.3.0-0.el9~bootstrap.r84280.copr5806616 R-core-devel(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616 pkgconfig(libR) = 4.3.0
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config
Obsoletes: R-Matrix-devel < 0.999375-7
Recommends: tex(latex) texinfo-tex
Processing files: R-devel-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Processing files: R-java-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Processing files: R-java-devel-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Processing files: libRmath-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Ky5ipJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-rc
+ LICENSEDIR=/builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/licenses/libRmath
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/licenses/libRmath
+ cp -pr doc/COPYING /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/share/licenses/libRmath
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libRmath = 4.3.0-0.el9~bootstrap.r84280.copr5806616 libRmath(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616 libRmath.so()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH)
Processing files: libRmath-devel-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Provides: libRmath-devel = 4.3.0-0.el9~bootstrap.r84280.copr5806616 libRmath-devel(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616 pkgconfig(libRmath) = 4.3.0
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config
Processing files: libRmath-static-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Provides: libRmath-static = 4.3.0-0.el9~bootstrap.r84280.copr5806616 libRmath-static(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-debugsource-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Provides: R-debugsource = 4.3.0-0.el9~bootstrap.r84280.copr5806616 R-debugsource(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-debuginfo-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Provides: R-debuginfo = 4.3.0-0.el9~bootstrap.r84280.copr5806616 R-debuginfo(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-debugsource(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616
Processing files: R-core-debuginfo-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib/debug/usr/bin/Rscript-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.debug and /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le/usr/lib/debug/usr/lib64/R/bin/Rscript-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.debug
Provides: R-core-debuginfo = 4.3.0-0.el9~bootstrap.r84280.copr5806616 R-core-debuginfo(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616 debuginfo(build-id) = 03a56a02f98fb76db0a0eacd6ee55c59b7b4c97b debuginfo(build-id) = 0c6b26393c879e5a18fb4682f434d8ea4fac4e33 debuginfo(build-id) = 0eb3b6c8f992a07a5ee88dd2b2d5b6bff9d865d3 debuginfo(build-id) = 16756ade69833a44604f0b4ae2c2b34df97af61b debuginfo(build-id) = 1c7e4d60cbd6d6276d6bc5726aef7bb7d266e841 debuginfo(build-id) = 26f0fde973a825acb5a9d3ff7d1f697ab1731e75 debuginfo(build-id) = 2c6ffe88c73594a0f173c421aa11f674232edcf9 debuginfo(build-id) = 474c4365890ec5c132391451c85353532c5f68a0 debuginfo(build-id) = 49c94bd760c321afcb410efcedd24ab1470b31cd debuginfo(build-id) = 4afda117369bfff5298ab0b1ca154522ebf33169 debuginfo(build-id) = 4d5a5184b6622cfee4725131e4bd50657a24d6fe debuginfo(build-id) = 55d62282148bfe3ee871bf65077a251ec3799559 debuginfo(build-id) = 56a58d69a18a015ae0a0eedc0e7b2882de3922ab debuginfo(build-id) = 5cd6e3e3574b41f57595b36d010d1ca7c6d42a7b debuginfo(build-id) = 6349f7780fe9ee476a267915018124a03bc6cd37 debuginfo(build-id) = 7c78858f5a91e2038f9561bbb8aeebb7160e54fb debuginfo(build-id) = 7c97f2cdf0b3c224d78e1b25d58e1cee01eefe10 debuginfo(build-id) = 99f12f1e8344627279b74115dc8e4545889741d8 debuginfo(build-id) = 9e3b0b49e8520d5ccba06dc3d4d949840d1d962c debuginfo(build-id) = a1a961441131df51b0af9f825ae9f24c2ef28eb6 debuginfo(build-id) = a9b0ef707c4616976e263d6536f4fc7a0f2ee8e5 debuginfo(build-id) = b4fdda1882c2c03f491415116e0c802eed44e495 debuginfo(build-id) = b99bba8efc3e643384f2efa39ed4bcc097d04042 debuginfo(build-id) = c26db0addc6fc050523aa642e767f383d7655b00 debuginfo(build-id) = cac270e3d7d1d77775750e7567b4e403349f02cb debuginfo(build-id) = d459b18bc86e0a6422bcee89170839c67272a2af debuginfo(build-id) = d6e0a06748953ee9e74a7162172e8c392768a4fe debuginfo(build-id) = ed826d36b9a879f9dc7115b5875b96f45871e0bc debuginfo(build-id) = f00e990d4404fb47b70b3973807f0a1d71b6240d debuginfo(build-id) = f2f8e54e57eea53b767681cf134d72603cad4d2e debuginfo(build-id) = f8ad5bc7038276ef87d78484107bb1e3ddaf97b8 debuginfo(build-id) = nilnil
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-debugsource(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616
Processing files: libRmath-debuginfo-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Provides: debuginfo(build-id) = dd8ab40082959775d8f8c995599a5973ce02900d libRmath-debuginfo = 4.3.0-0.el9~bootstrap.r84280.copr5806616 libRmath-debuginfo(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-debugsource(ppc-64) = 4.3.0-0.el9~bootstrap.r84280.copr5806616
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
Wrote: /builddir/build/RPMS/libRmath-debuginfo-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-core-devel-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/libRmath-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/libRmath-static-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/libRmath-devel-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-debuginfo-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-devel-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-java-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-java-devel-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-debugsource-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-core-debuginfo-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Wrote: /builddir/build/RPMS/R-core-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.XAiOb5
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-rc
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-4.3.0-0.el9~bootstrap.r84280.copr5806616.ppc64le
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0