get_nex {treebase} | R Documentation |
imports phylogenetic trees from treebase. internal function
Description
imports phylogenetic trees from treebase. internal function
Usage
get_nex(
query,
max_trees = "last()",
returns = "tree",
curl = getCurlHandle(),
verbose = TRUE,
pause1 = 1,
pause2 = 1,
attempts = 5,
only_metadata = FALSE
)
Arguments
query |
: a phylows formatted search, see https://sourceforge.net/apps/mediawiki/treebase/index.php?title=API |
max_trees |
limits the number of trees returned should be kept. |
returns |
should return the tree object or the matrix (of sequences) |
curl |
the handle to the curl |
verbose |
a logical indicating if output should be printed to screen |
pause1 |
number of seconds to hesitate between requests |
pause2 |
number of seconds to hesitate between individual files |
attempts |
number of attempts to access a particular resource |
Value
A list object containing all the trees matching the search (of class phylo)
[Package treebase version 0.1.5 Index]