chromDictMeth {PCBS} | R Documentation |
Create a chromDict of percent methylation difference at all sites.
Description
chromDicts are lists of keyed data.tables that enable very fast computing times. Much like the primary PCBS function chromDict() which makes a chromDict of all locus ranks, the chromDictMeth() function makes is a list of chromosome-specific data.tables containing percent methylation differences at all loci..
Usage
chromDictMeth(mat, IDs, filter_thresh)
Arguments
mat |
|
IDs |
|
filter_thresh |
|
Value
Returns a list of data.tables
for each chromosome, for faster analysis.
Examples
chromDictMethylDiff <- chromDictMeth(eigen, c("trt", "ctl"))