create_ksrates_configure_file_based_on_table {shinyWGD} | R Documentation |
Create Ksrates Configuration File Based on Data Table
Description
This function generates a Ksrates configuration file based on a data table and other parameters.
Usage
create_ksrates_configure_file_based_on_table(
data_table,
focal_species,
newick_tree_file,
ksrates_conf_file,
species_info_file,
working_wd
)
Arguments
data_table |
The data table containing information about species, proteomes, and GFF files. |
focal_species |
The name of the focal species. |
newick_tree_file |
The path to the Newick tree file. |
ksrates_conf_file |
The path to the Ksrates configuration file to be generated. |
species_info_file |
The path to the species information file. |
working_wd |
A character string specifying the working directory to be used. |
[Package shinyWGD version 1.0.0 Index]