geneAnnotationPlot {ProActive} | R Documentation |
Gene annotation plot
Description
Plot read coverage and location of gene annotations that match the keywords and search criteria for contig/chunk currently being assessed
Usage
geneAnnotationPlot(
geneAnnotSubset,
keywords,
pileupSubset,
colIdx,
startbpRange,
endbpRange,
elevRatio,
pattern,
windowSize,
chunkSize,
mode
)
Arguments
geneAnnotSubset |
Subset of gene annotations to be plotted |
keywords |
The key-word(s) used for the search. |
pileupSubset |
A subset of the pileup associated with the contig/chunk being assessed |
colIdx |
The column index 'gene' or 'product' column |
startbpRange |
The basepair at which the search is started if a 'specific' search is used |
endbpRange |
The basepair at which the search is ended if a 'specific' search is used |
elevRatio |
The maximum/minimum values of the pattern-match |
pattern |
The pattern-match information associated with the contig/chunk being assessed |
windowSize |
The number of basepairs to average read coverage values over. |
[Package ProActive version 0.1.0 Index]