elevOrGapClassif {ProActive} | R Documentation |
Classifies partial elevation/gap pattern-matches
Description
classify the contig/chunk as 'gap' if the elevated region is less than 50 the length of the contig/chunk and otherwise classify as 'elevation'.
Usage
elevOrGapClassif(bestMatchList, pileupSubset)
Arguments
bestMatchList |
A list containing pattern-match information associated with all contigs/chunks classified by 'ProActive()' pattern-matching |
pileupSubset |
A subset of the pileup that pertains only to the contig/chunk currently being assessed. |
[Package ProActive version 0.1.0 Index]