noPattern {ProActive}R Documentation

No read coverage pattern

Description

Assess whether a contig/chunk does not have an elevated/gapped read coverage pattern. A horizontal line at the mean or median coverage should be the best match if the contig/chunk read coverage is not gapped or elevated.

Usage

noPattern(pileupSubset)

Arguments

pileupSubset

A subset of the read coverage dataset that pertains only to the contig currently being assessed


[Package ProActive version 0.1.0 Index]