sampleMetagenomegffTSV {ProActive} | R Documentation |
sampleMetagenomegffTSV
Description
A subset of gene annotations associated with the metagenome in the sampleMetagenomePileup Report...
Usage
sampleMetagenomegffTSV
Format
## 'sampleMetagenomegffTSV' A data frame with 467 rows and 9 columns:
- V1
seqid
- V2
source
- V3
type
- V4
start
- V5
end
- V6
score
- V7
strand
- V8
phase
- V9
attributes
Details
This is a standard .gff file format. The .gff file was generated by running PROKKA with default parameters on the metagenome assembly associated with the sampleMetagenomePileup in the ProActive package. The gff was subset to only include the data associated with the contigs in the sample data subset.
Source
<https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-020-00935-5>
[Package ProActive version 0.1.0 Index]