fullElevGap {ProActive} | R Documentation |
Controller function for full elevation/gap pattern-matching
Description
Builds full elevation/gap pattern-matches, shrinks the width, and collects best match information
Usage
fullElevGap(pileupSubset, windowSize, minSize, maxSize, elevOrGap)
Arguments
pileupSubset |
A subset of the pileup that pertains only to the contig/chunk currently being assessed. |
windowSize |
The number of basepairs to average read coverage values over. Options are 100, 200, 500, 1000 ONLY. Default is 1000. |
minSize |
The minimum size (in bp) of elevation or gap patterns. Default is 10000. |
maxSize |
The maximum size (in bp) of elevation or gap patterns. Default is NA (i.e. no maximum). |
elevOrGap |
Pattern-matching on 'elevation' or 'gap' pattern. |
[Package ProActive version 0.1.0 Index]