genomeChunks {ProActive} | R Documentation |
'chunk' genomes
Description
Subset genome pileup into chunks for pattern-matching
Usage
genomeChunks(pileup, chunkSize)
Arguments
pileup |
A .txt file containing mapped sequencing read coverages averaged over 100 bp windows/bins. |
chunkSize |
If 'mode'="genome" OR if 'mode'="metagenome" and 'chunkContigs'=TRUE, chunk the genome or contigs, respectively, into smaller subsets for pattern-matching. ‘chunkSize' determines the size (in bp) of each ’chunk'. Default is 50000. |
[Package ProActive version 0.1.0 Index]