Analyze Data from Analysis of Behavior Experiments


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Documentation for package ‘YEAB’ version 1.0.6

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ab_range_normalization Normalization (or rescaling) between arbitrary a and b
balci2019 Peak individual trial analysis using moving average
berm Biexponential Refractory Model (BERM)
berm_log_likelihood Biexponential Refractory Model (BERM)
biexponential Biexponential Model
biexponential_log_likelihood Optimization Function for the Biexponential Model
bp_opt Find the best fit for individual trials using 'optim'
ceiling_multiple Find the nearest multiple
curv_index_fry Curvature index using Fry derivation
curv_index_int Curvature index by numerical integration
DD_data Delay Discounting Data
dd_example An example dataset of delays and normalized subjective values
entropy_kde2d Shannon entropy in two dimensions
eq_hyp Hyperbolic function
event_extractor Event extractor
exhaustive_lhl Individual trial analysis for peak procedure data
exhaustive_sbp Single breakpoint algorithm, the exhaustive version as the one used in Guilhardi & Church 2004
exp_fit Exponential fit with nls
fi60_raw_from_med Raw Fixed Interval Data
fleshler_hoffman Fleshler & Hoffman (1962) progression
fwhm Full Width at Half Maximum
f_table Frequency table for binned data
gaussian_fit Gaussian + ramp fit with LM algorithm
gauss_example Gaussian Example Data
gauss_example_1 Gaussian Example 1 Data
gauss_example_2 Gaussian Example 2 Data
gell_like Gellerman-like series
get_bins A function to binarize a numeric vector with a given resolution
hyperbolic_fit Hyperbolic fit with nls
hyp_data Simulated Data for Hyperbolic Discounting
hyp_data_list Hypothetical dataset list for testing purposes
ind_trials_obj_fun Objective function for finding the best fit for individual trials
ind_trials_opt Find the best fit for individual trials using 'optim'
KL_div Computes the Kullback-Leibler divergence based on kernel density estimates
map_onto Biexponential Refractory Model (BERM)
mut_info_discrete Mutual information of continuous variables using discretization
mut_info_knn Mutual Information for Continuous Variables using kNN
n_between_intervals Find maximum value within intervals
objective_bp Objective function for the breakpoint optimization algorithm
optimize_berm Biexponential Refractory Model (BERM)
optimize_biexponential Optimization Function for the Biexponential Model
param_conver Biexponential Refractory Model (BERM)
read_med Process MED to csv based on standard data structure event.time
r_times Reaction Times from Peak Procedure
sample_from_density Sample from a density estimate
trapezoid_auc Area under the curve (AUC)
unit_normalization Min-max normalization (also feature rescaling)
val_in_interval True value in interval