mincostflow {HetSeq} | R Documentation |
Min-Cost-Max-Flow for cellular trajectories
Description
Applies Min-Cost-Max-Flow to calculate optimal trajectories from distance matrices.
Usage
mincostflow(D.list, verbose = TRUE)
Arguments
D.list |
List of (pruned) distance matrices. Can be generated by the distmat function. |
verbose |
Show verbose output. |
Value
Matrix of cell-cell trajectories spanning all given timepoints.
Examples
# Full vignette available on https://grandr.erhard-lab.de/articles/web/hetseq.html
mincostflow(D.list)
[Package HetSeq version 0.1.0 Index]