compute_state_filter {PhylogeneticEM} | R Documentation |
List of potential daughter states when parent is in state k.
Description
compute_state_filter
compute the admissible daughters states, i.e. states that
realize the minimum cost for the tree parent -> daughter -> subtree(daughter), when
the parent node is in state k.
Usage
compute_state_filter(cost, k)
Arguments
cost |
a (ndaughters) x (nclus) matrix of the cost of each state for the daughters nodes. |
k |
the parental state considered. |
Details
This function is used in functions parsimonyNumber
and enumerate_parsimony
.
Value
A (ndaughters) x (nclus) binary matrix indicating the admissible states for the daughters node when parent node is in state k.
[Package PhylogeneticEM version 1.8.0 Index]