kendall {mixtree} | R Documentation |
Compute the Kendall distance matrix
Description
Kendall's distance measures the depth of the most recent common infector (MRCI) for each pair of nodes with respect to the source (patient 0).
Usage
kendall(tree)
Arguments
tree |
A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs. |
Value
A square, symmetric matrix of Kendall's distances between nodes.
References
A Metric to Compare Transmission Trees - M Kendall ยท 2018
See Also
Examples
tree <- data.frame(from = c(1, 1, 2, 2, 3, 3), to = c(2, 3, 4, 5, 6, 7))
kendall(tree)
[Package mixtree version 0.0.1 Index]