trace-package {trace}R Documentation

trace: Tandem Repeat Analysis by Capillary Electrophoresis

Description

A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) doi:10.1186/1752-0509-4-29).

Author(s)

Maintainer: Zachariah McLean zachariah.louis.mclean@gmail.com (ORCID) [copyright holder]

Authors:

Other contributors:

See Also

Useful links:


[Package trace version 0.6.0 Index]