plot_fragments {trace} | R Documentation |
Plot Peak Data
Description
Plots peak data from a list of fragments.
Usage
plot_fragments(
fragments_list,
n_facet_col = 1,
sample_subset = NULL,
xlim = NULL,
ylim = NULL
)
Arguments
fragments_list |
A list of fragments_repeats objects containing fragment data. |
n_facet_col |
A numeric value indicating the number of columns for faceting in the plot. |
sample_subset |
A character vector of unique ids for a subset of samples to plot |
xlim |
the x limits of the plot. A numeric vector of length two. |
ylim |
the y limits of the plot. A numeric vector of length two. |
Value
A plot object displaying the peak data.
Examples
gm_raw <- trace::example_data
fragments_list <- peak_table_to_fragments(gm_raw,
data_format = "genemapper5",
dye_channel = "B",
min_size_bp = 300
)
find_alleles(
fragments_list
)
plot_fragments(fragments_list[1])
[Package trace version 0.6.0 Index]