scdeco.pg.noxc {scDECO}R Documentation

ZENCO fitting function when no secondary covariate is provided

Description

ZENCO fitting function when no secondary covariate is provided

Usage

scdeco.pg.noxc(
  dat,
  b0,
  b1,
  adapt_iter = 10000,
  update_iter = 5000,
  coda_iter = 50000,
  coda_thin = 20,
  coda_burnin = 10000
)

Arguments

dat

matrix containing expression values as first two columns and covariate as third column

b0

intercept of zinf parameter

b1

slope of zinf parameter

adapt_iter

number of adaptation iterations in the jags.model function

update_iter

update iterations in the update function

coda_iter

number of iterations for the coda.sample function

coda_thin

how much to thin the resulting MCMC output

coda_burnin

how many iterations to burn before beginning coda sample collection

Value

MCMC samples that have been adapted, burned, and thinned


[Package scDECO version 0.1.1 Index]