get_transcripts {gtexr} | R Documentation |
Get Transcripts
Description
Find all transcripts of a reference gene.
This service returns information about transcripts of the given versioned GENCODE ID.
A genome build and GENCODE version must be provided.
By default, this service queries the genome build and GENCODE version used by the latest GTEx release.
Usage
get_transcripts(
gencodeId,
gencodeVersion = "v26",
genomeBuild = "GRCh38/hg38",
page = 0,
itemsPerPage = getOption("gtexr.itemsPerPage"),
.verbose = getOption("gtexr.verbose"),
.return_raw = FALSE
)
Arguments
gencodeId |
String. A Versioned GENCODE ID of a gene, e.g. "ENSG00000065613.9". |
gencodeVersion |
String (default = "v26"). GENCODE annotation release. Either "v26" or "v19". |
genomeBuild |
String. Options: "GRCh38/hg38", "GRCh37/hg19". Default = "GRCh38/hg38". |
page |
Integer (default = 0). |
itemsPerPage |
Integer (default = 250). Set globally to maximum value
100000 with |
.verbose |
Logical. If |
.return_raw |
Logical. If |
Value
A tibble. Or a list if .return_raw = TRUE
.
See Also
Other Reference Genome Endpoints:
get_exons()
,
get_gene_search()
,
get_genes()
,
get_genomic_features()
,
get_gwas_catalog_by_location()
,
get_neighbor_gene()
Examples
## Not run:
get_transcripts(gencodeId = "ENSG00000203782.5")
## End(Not run)