localScore-package {localScore}R Documentation

localScore: Package for Sequence Analysis by Local Score

Description

Provides functionalities for:

Given a sequence of numerical score X_1,\dots,X_n, the local score is defined : H_n = \max_{1 \leq i \leq j \leq n} \sum_{l = i}^j X_l This package find the value local score and the associated sub-sequence, and also sub-optimal local scores and segments. The complexity is linear with n. It can be viewed as a generalization of a sliding window method, considering all windows size. In order to be pertinent, the expectation of the scores X_i should be negative. Most of the methods concerning statistical relevance implemented in this package only applied on integer scores.

Details

Please refer to the vignette of this package or the manual for details on how to use this package.

Author(s)

Maintainer: David Robelin david.robelin@inrae.fr

Authors:

Other contributors:

References


[Package localScore version 2.0.3 Index]