orthP {orthGS} | R Documentation |
Search Orthologous of a Given Protein
Description
Searches orthologous of a given protein within a set of selected species
Usage
orthP(phylo_id, set = "all")
Arguments
phylo_id |
phylo_id of the query protein |
set |
set of species of interest provided as a character vector, either with the binomial or short code of the species (see details). |
Details
When set = "all", the search will be carry out against all the species in the database.
Value
A list with thee elements: 1. subtree of the relevant proteins; 2. vector color; 3. phylo_ids of the orthologous found.
Examples
orthP(phylo_id = "Pp_GS1a", set = c("Pp", "Psy", "Psm", "Ap"))
[Package orthGS version 0.1.8 Index]