get_gene_fold_changes {SkeletalVis}R Documentation

Get gene differential expression results for genes of interest

Description

Extracts the fold change and p-values across the SkeletalVis database for the specified genes.

Usage

get_gene_fold_changes(
  skeletalvis,
  gene_symbols,
  return_fdr = TRUE,
  add_meta_data = TRUE
)

Arguments

skeletalvis

The path to the SkeletalVis data folder.

gene_symbols

The human gene symbols to extract fold change and FDR values for.

return_fdr

Return FDR values (FALSE by default).

add_meta_data

Add metadata such as species, tissue, description of overall experiment and specific comparison

Value

A tibble containing gene expression results for the specified genes.

Examples

skeletalvis <- load_skeletalvis(demo=TRUE)

gene_results <- get_gene_fold_changes(skeletalvis, c("SOX9","ACAN"))

head(gene_results)

[Package SkeletalVis version 0.1.1 Index]