get_gene_fold_changes {SkeletalVis} | R Documentation |
Get gene differential expression results for genes of interest
Description
Extracts the fold change and p-values across the SkeletalVis database for the specified genes.
Usage
get_gene_fold_changes(
skeletalvis,
gene_symbols,
return_fdr = TRUE,
add_meta_data = TRUE
)
Arguments
skeletalvis |
The path to the SkeletalVis data folder. |
gene_symbols |
The human gene symbols to extract fold change and FDR values for. |
return_fdr |
Return FDR values (FALSE by default). |
add_meta_data |
Add metadata such as species, tissue, description of overall experiment and specific comparison |
Value
A tibble containing gene expression results for the specified genes.
Examples
skeletalvis <- load_skeletalvis(demo=TRUE)
gene_results <- get_gene_fold_changes(skeletalvis, c("SOX9","ACAN"))
head(gene_results)
[Package SkeletalVis version 0.1.1 Index]