mri_synthstrip {freesurfer} | R Documentation |
Use Freesurfers MRI SynthStrip
Description
This function calls mri_mask
to mask an image
Usage
mri_synthstrip(
file,
outfile = NULL,
retimg = TRUE,
maskfile = NULL,
opts = "",
...
)
synthstrip(
file,
outfile = NULL,
retimg = TRUE,
maskfile = NULL,
opts = "",
...
)
Arguments
file |
(character) input filename |
outfile |
(character) output filename |
retimg |
(logical) return image of class nifti |
maskfile |
(character) path for mask output |
opts |
(character) additional options to |
... |
additional arguments passed to |
Value
Character or nifti depending on retimg
Examples
if (have_fs() && requireNamespace("oro.nifti", quietly = TRUE)) {
img = oro.nifti::nifti(array(rnorm(5*5*5), dim = c(5,5,5)))
res = mri_synthstrip(img)
}
[Package freesurfer version 1.8.1 Index]