est_map_hmm_out {onemap} | R Documentation |
C++ routine for multipoint analysis in outcrossing populations
Description
It calls C++ routine that implements the methodology of Hidden Markov Models (HMM) to construct multipoint linkage maps in outcrossing species
Usage
est_map_hmm_out(
geno,
error,
type,
phase,
rf.vec = NULL,
verbose = TRUE,
tol = 1e-06
)
Arguments
geno |
matrix of genotypes. Rows represent marker and columns represent individuals. |
type |
a vector indicating the type of marker. For more
information see |
phase |
a vector indicating the linkage phases between
markers. For more information see
|
rf.vec |
a vector containing the recombination fraction initial values |
verbose |
If |
tol |
tolerance for the C routine, i.e., the value used to evaluate convergence. |
Value
a list containing the re-estimated vector of recombination fractions and the logarithm of the likelihood
[Package onemap version 3.2.2 Index]