Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c119' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9067937-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 1.3 PID: 19601 Logging PID: 19602 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 9067937, 'buildroot_pkgs': [], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'f9f55035171da57adfdae916c647d89f028edd73', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-onemap', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-onemap', 'package_version': '3.2.2-1.copr9067937', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'iucar', 'tags': [], 'task_id': '9067937-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-onemap /var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-onemap', '/var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap'... Running: git checkout f9f55035171da57adfdae916c647d89f028edd73 -- cmd: ['git', 'checkout', 'f9f55035171da57adfdae916c647d89f028edd73', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap rc: 0 stdout: stderr: Note: switching to 'f9f55035171da57adfdae916c647d89f028edd73'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at f9f5503 automatic import of R-CRAN-onemap Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading onemap_3.2.2.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Calling: curl -H Pragma: -o onemap_3.2.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-onemap/onemap_3.2.2.tar.gz/md5/5f3877a4cc99b16bf7665b41486e0bc4/onemap_3.2.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 527k 100 527k 0 0 5879k 0 --:--:-- --:--:-- --:--:-- 5930k INFO: Reading stdout from command: md5sum onemap_3.2.2.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap/R-CRAN-onemap.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1747795026.939987 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.1 starting (python version = 3.13.0, NVR = mock-6.1-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap/R-CRAN-onemap.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1747795026.939987 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap/R-CRAN-onemap.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.1 INFO: Mock Version: 6.1 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1747795026.939987/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.23.0-1.fc41.noarch python3-dnf-plugins-core-4.10.1-1.fc41.noarch dnf5-5.2.13.1-1.fc41.x86_64 dnf5-plugins-5.2.13.1-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 824.7 KiB/s | 30.5 KiB | 00m00s fedora 100% | 1.1 MiB/s | 30.2 KiB | 00m00s Copr repository 100% | 37.5 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 26.6 MiB/s | 12.9 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-1.fc41 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-11.fc41 updates 5.7 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 41-32 updates 19.7 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40-25.fc41 updates 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1.1-1.fc41 updates 361.7 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 294-1.fc41 updates 183.6 KiB rpm-build x86_64 4.20.1-1.fc41 updates 193.8 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-12.fc41 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-64.fc41 fedora 386.8 KiB util-linux x86_64 2.40.4-1.fc41 updates 3.6 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.8.1-2.fc41 updates 1.3 MiB Installing dependencies: add-determinism x86_64 0.3.6-3.fc41 updates 2.4 MiB alternatives x86_64 1.31-1.fc41 updates 64.8 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.3-1.fc41 updates 351.3 KiB authselect x86_64 1.5.0-8.fc41 fedora 157.6 KiB authselect-libs x86_64 1.5.0-8.fc41 fedora 822.2 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.1-5.fc41 updates 27.4 MiB build-reproducibility-srpm-macros noarch 0.3.6-3.fc41 updates 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc41 fedora 2.4 MiB coreutils-common x86_64 9.5-11.fc41 updates 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20250124-1.git4d262e7.fc41 updates 137.4 KiB curl x86_64 8.9.1-3.fc41 updates 793.5 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.1-6.fc41 updates 200.9 KiB dwz x86_64 0.15-8.fc41 fedora 298.9 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-13.fc41 updates 40.2 KiB elfutils x86_64 0.193-2.fc41 updates 3.0 MiB elfutils-debuginfod-client x86_64 0.193-2.fc41 updates 84.1 KiB elfutils-default-yama-scope noarch 0.193-2.fc41 updates 1.8 KiB elfutils-libelf x86_64 0.193-2.fc41 updates 1.2 MiB elfutils-libs x86_64 0.193-2.fc41 updates 686.6 KiB fedora-gpg-keys noarch 41-1 fedora 126.4 KiB fedora-release noarch 41-32 updates 0.0 B fedora-release-identity-basic noarch 41-32 updates 654.0 B fedora-repos noarch 41-1 fedora 4.9 KiB file x86_64 5.45-7.fc41 fedora 103.5 KiB file-libs x86_64 5.45-7.fc41 fedora 9.9 MiB filesystem x86_64 3.18-23.fc41 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc41 updates 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 16.3-1.fc41 updates 13.3 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.1-2.fc41 fedora 747.0 B glibc x86_64 2.40-25.fc41 updates 6.7 MiB glibc-common x86_64 2.40-25.fc41 updates 1.0 MiB glibc-gconv-extra x86_64 2.40-25.fc41 updates 7.9 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-5.fc41 updates 60.8 KiB jansson x86_64 2.13.1-10.fc41 fedora 88.3 KiB json-c x86_64 0.17-4.fc41 fedora 82.4 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-4.fc41 updates 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.4-4.fc41 updates 926.6 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.4-1.fc41 updates 257.2 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.70-4.fc41 fedora 220.2 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-6.fc41 fedora 67.2 KiB libcurl x86_64 8.9.1-3.fc41 updates 809.3 KiB libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.4-1.fc41 updates 356.4 KiB libffi x86_64 3.4.6-3.fc41 fedora 86.4 KiB libgcc x86_64 14.2.1-7.fc41 updates 270.9 KiB libgomp x86_64 14.2.1-7.fc41 updates 514.2 KiB libidn2 x86_64 2.3.8-1.fc41 updates 556.6 KiB libmount x86_64 2.40.4-1.fc41 updates 348.8 KiB libnghttp2 x86_64 1.62.1-3.fc41 updates 174.1 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc41 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.7-5.fc41 fedora 181.0 KiB libsemanage x86_64 3.7-2.fc41 fedora 293.5 KiB libsepol x86_64 3.7-2.fc41 fedora 817.8 KiB libsmartcols x86_64 2.40.4-1.fc41 updates 176.2 KiB libssh x86_64 0.10.6-8.fc41 fedora 513.3 KiB libssh-config noarch 0.10.6-8.fc41 fedora 277.0 B libstdc++ x86_64 14.2.1-7.fc41 updates 2.7 MiB libtasn1 x86_64 4.20.0-1.fc41 updates 180.4 KiB libtirpc x86_64 1.3.6-1.rc3.fc41 updates 197.6 KiB libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libutempter x86_64 1.2.1-15.fc41 fedora 57.7 KiB libuuid x86_64 2.40.4-1.fc41 updates 39.9 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.38-7.fc41 updates 288.5 KiB libxml2 x86_64 2.12.10-1.fc41 updates 1.7 MiB libzstd x86_64 1.5.7-1.fc41 updates 804.0 KiB lua-libs x86_64 5.4.7-3.fc41 updates 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.9-1.fc41 updates 645.3 KiB openssl-libs x86_64 1:3.2.4-1.fc41 updates 7.8 MiB p11-kit x86_64 0.25.5-3.fc41 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-3.fc41 fedora 391.4 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.6.1-7.fc41 updates 1.8 MiB pam-libs x86_64 1.6.1-7.fc41 updates 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc41 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc41 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc41 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20250116-1.fc41 updates 68.5 KiB pyproject-srpm-macros noarch 1.18.1-1.fc41 updates 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc41 fedora 500.0 B qt6-srpm-macros noarch 6.8.2-1.fc41 updates 456.0 B readline x86_64 8.2-10.fc41 fedora 493.2 KiB rpm x86_64 4.20.1-1.fc41 updates 3.1 MiB rpm-build-libs x86_64 4.20.1-1.fc41 updates 210.7 KiB rpm-libs x86_64 4.20.1-1.fc41 updates 730.0 KiB rpm-sequoia x86_64 1.7.0-5.fc41 updates 2.4 MiB rust-srpm-macros noarch 26.3-3.fc41 fedora 4.8 KiB setup noarch 2.15.0-8.fc41 updates 720.7 KiB sqlite-libs x86_64 3.46.1-3.fc41 updates 1.5 MiB systemd-libs x86_64 256.12-1.fc41 updates 2.0 MiB util-linux-core x86_64 2.40.4-1.fc41 updates 1.5 MiB xxhash-libs x86_64 0.8.3-1.fc41 updates 88.5 KiB xz-libs x86_64 1:5.8.1-2.fc41 updates 217.9 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-41.fc41 fedora 703.2 KiB zlib-ng-compat x86_64 2.2.3-2.fc41 updates 141.9 KiB zstd x86_64 1.5.7-1.fc41 updates 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation, 181 MiB extra will be used (install 181 MiB, remove 0 B). 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| 205.0 MiB/s | 839.9 KiB | 00m00s [103/156] Installing libnghttp2-0:1.62. 100% | 171.2 MiB/s | 175.3 KiB | 00m00s [104/156] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s [105/156] Installing coreutils-common-0 100% | 243.3 MiB/s | 11.2 MiB | 00m00s [106/156] Installing openssl-libs-1:3.2 100% | 313.2 MiB/s | 7.8 MiB | 00m00s [107/156] Installing coreutils-0:9.5-11 100% | 124.1 MiB/s | 5.7 MiB | 00m00s [108/156] Installing ca-certificates-0: 100% | 2.4 MiB/s | 2.4 MiB | 00m01s [109/156] Installing krb5-libs-0:1.21.3 100% | 165.7 MiB/s | 2.3 MiB | 00m00s [110/156] Installing libarchive-0:3.7.4 100% | 181.4 MiB/s | 928.6 KiB | 00m00s [111/156] Installing libtirpc-0:1.3.6-1 100% | 97.4 MiB/s | 199.4 KiB | 00m00s [112/156] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [113/156] Installing authselect-libs-0: 100% | 81.8 MiB/s | 837.2 KiB | 00m00s [114/156] Installing cracklib-0:2.9.11- 100% | 30.6 MiB/s | 250.3 KiB | 00m00s [115/156] Installing libpwquality-0:1.4 100% | 46.7 MiB/s | 430.1 KiB | 00m00s [116/156] Installing libnsl2-0:2.0.1-2. 100% | 28.8 MiB/s | 59.1 KiB | 00m00s [117/156] Installing pam-0:1.6.1-7.fc41 100% | 72.2 MiB/s | 1.9 MiB | 00m00s [118/156] Installing libssh-0:0.10.6-8. 100% | 125.8 MiB/s | 515.4 KiB | 00m00s [119/156] Installing rpm-sequoia-0:1.7. 100% | 241.8 MiB/s | 2.4 MiB | 00m00s [120/156] Installing rpm-libs-0:4.20.1- 100% | 178.6 MiB/s | 731.5 KiB | 00m00s [121/156] Installing rpm-build-libs-0:4 100% | 103.3 MiB/s | 211.5 KiB | 00m00s [122/156] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [123/156] Installing openldap-0:2.6.9-1 100% | 126.8 MiB/s | 649.1 KiB | 00m00s [124/156] Installing libcurl-0:8.9.1-3. 100% | 197.8 MiB/s | 810.4 KiB | 00m00s [125/156] Installing elfutils-debuginfo 100% | 42.2 MiB/s | 86.5 KiB | 00m00s [126/156] Installing elfutils-0:0.193-2 100% | 212.1 MiB/s | 3.0 MiB | 00m00s [127/156] Installing binutils-0:2.43.1- 100% | 228.2 MiB/s | 27.4 MiB | 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[154/156] Installing authselect-0:1.5.0 100% | 39.5 MiB/s | 161.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [156/156] Installing info-0:7.1.1-1.fc4 100% | 259.6 KiB/s | 362.2 KiB | 00m01s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-3.fc41.x86_64 alternatives-1.31-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.3-1.fc41.x86_64 authselect-1.5.0-8.fc41.x86_64 authselect-libs-1.5.0-8.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-1.fc41.x86_64 binutils-2.43.1-5.fc41.x86_64 build-reproducibility-srpm-macros-0.3.6-3.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc41.noarch coreutils-9.5-11.fc41.x86_64 coreutils-common-9.5-11.fc41.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20250124-1.git4d262e7.fc41.noarch curl-8.9.1-3.fc41.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-6.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-13.fc41.noarch elfutils-0.193-2.fc41.x86_64 elfutils-debuginfod-client-0.193-2.fc41.x86_64 elfutils-default-yama-scope-0.193-2.fc41.noarch elfutils-libelf-0.193-2.fc41.x86_64 elfutils-libs-0.193-2.fc41.x86_64 fedora-gpg-keys-41-1.noarch fedora-release-41-32.noarch fedora-release-common-41-32.noarch fedora-release-identity-basic-41-32.noarch fedora-repos-41-1.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-16.3-1.fc41.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-25.fc41.x86_64 glibc-common-2.40-25.fc41.x86_64 glibc-gconv-extra-2.40-25.fc41.x86_64 glibc-minimal-langpack-2.40-25.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc41.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-1.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 json-c-0.17-4.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-4.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-4.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.4-1.fc41.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc41.x86_64 libcurl-8.9.1-3.fc41.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.4-1.fc41.x86_64 libffi-3.4.6-3.fc41.x86_64 libgcc-14.2.1-7.fc41.x86_64 libgomp-14.2.1-7.fc41.x86_64 libidn2-2.3.8-1.fc41.x86_64 libmount-2.40.4-1.fc41.x86_64 libnghttp2-1.62.1-3.fc41.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc41.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.4-1.fc41.x86_64 libssh-0.10.6-8.fc41.x86_64 libssh-config-0.10.6-8.fc41.noarch libstdc++-14.2.1-7.fc41.x86_64 libtasn1-4.20.0-1.fc41.x86_64 libtirpc-1.3.6-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libutempter-1.2.1-15.fc41.x86_64 libuuid-2.40.4-1.fc41.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.38-7.fc41.x86_64 libxml2-2.12.10-1.fc41.x86_64 libzstd-1.5.7-1.fc41.x86_64 lua-libs-5.4.7-3.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.9-1.fc41.x86_64 openssl-libs-3.2.4-1.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-7.fc41.x86_64 pam-libs-1.6.1-7.fc41.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc41.x86_64 pkgconf-m4-2.3.0-1.fc41.noarch pkgconf-pkg-config-2.3.0-1.fc41.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20250116-1.fc41.noarch pyproject-srpm-macros-1.18.1-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc41.noarch qt6-srpm-macros-6.8.2-1.fc41.noarch readline-8.2-10.fc41.x86_64 redhat-rpm-config-294-1.fc41.noarch rpm-4.20.1-1.fc41.x86_64 rpm-build-4.20.1-1.fc41.x86_64 rpm-build-libs-4.20.1-1.fc41.x86_64 rpm-libs-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-5.fc41.x86_64 rust-srpm-macros-26.3-3.fc41.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-8.fc41.noarch shadow-utils-4.15.1-12.fc41.x86_64 sqlite-libs-3.46.1-3.fc41.x86_64 systemd-libs-256.12-1.fc41.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.4-1.fc41.x86_64 util-linux-core-2.40.4-1.fc41.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.3-1.fc41.x86_64 xz-5.8.1-2.fc41.x86_64 xz-libs-5.8.1-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.2.3-2.fc41.x86_64 zstd-1.5.7-1.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1747795026.939987/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-kkbsfhl0/R-CRAN-onemap/R-CRAN-onemap.spec) Config(child) 0 minutes 13 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm) Config(fedora-41-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1747795026.939987/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.23.0-1.fc41.noarch python3-dnf-plugins-core-4.10.1-1.fc41.noarch dnf5-5.2.13.1-1.fc41.x86_64 dnf5-plugins-5.2.13.1-1.fc41.x86_64 Finish: chroot init Start: build phase for R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm Start: build setup for R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Updating and loading repositories: updates 100% | 1.1 MiB/s | 30.5 KiB | 00m00s fedora 100% | 1.2 MiB/s | 30.2 KiB | 00m00s Copr repository 100% | 41.6 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 31.7 MiB/s | 12.9 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-CRAN-RColorBrewer noarch 1.1.3-1.fc41.copr7349948 copr_base 63.6 KiB R-CRAN-Rcpp x86_64 1.0.14-1.fc41.copr8507898 copr_base 8.4 MiB R-CRAN-dendextend noarch 1.19.0-1.fc41.copr8270271 copr_base 7.3 MiB R-CRAN-dplyr x86_64 1.1.4-1.fc41.copr7361225 copr_base 2.6 MiB R-CRAN-ggplot2 noarch 3.5.2-1.fc41.copr8883281 copr_base 7.2 MiB R-CRAN-ggpubr noarch 0.6.0-1.fc41.copr7370857 copr_base 2.6 MiB R-CRAN-htmlwidgets noarch 1.6.4-1.fc41.copr7361223 copr_base 2.0 MiB R-CRAN-plotly noarch 4.10.4-1.fc41.copr7364942 copr_base 6.7 MiB R-CRAN-princurve x86_64 2.1.6-1.fc41.copr7353773 copr_base 179.0 KiB R-CRAN-rebus noarch 0.1.3-1.fc41.copr8100739 copr_base 412.8 KiB R-CRAN-reshape2 x86_64 1.4.4-3.fc41.copr7359520 copr_base 215.1 KiB R-CRAN-smacof x86_64 2.1.7-1.fc41.copr8125939 copr_base 1.8 MiB R-CRAN-tidyr x86_64 1.3.1-1.fc41.copr7362421 copr_base 1.8 MiB R-CRAN-vcfR x86_64 1.15.0-1.fc41.copr7363648 copr_base 2.3 MiB R-core x86_64 4.4.3-1.fc41 updates 102.9 MiB R-devel x86_64 4.4.3-1.fc41 updates 0.0 B Installing dependencies: R-CRAN-Deriv noarch 4.1.6-1.fc41.copr8019418 copr_base 180.6 KiB R-CRAN-Formula noarch 1.2.5-1.fc41.copr7350002 copr_base 205.4 KiB R-CRAN-Hmisc x86_64 5.2.3-1.fc41.copr8772321 copr_base 5.3 MiB R-CRAN-MASS x86_64 7.3.65-1.fc41.copr8711526 copr_base 1.8 MiB R-CRAN-Matrix x86_64 1.7.3-1.fc41.copr8752527 copr_base 8.2 MiB R-CRAN-MatrixModels noarch 0.5.4-1.fc41.copr8825215 copr_base 525.5 KiB R-CRAN-R6 noarch 2.6.1-1.fc41.copr8657185 copr_base 123.3 KiB R-CRAN-Rdpack noarch 2.6.4-1.fc41.copr8875724 copr_base 1.0 MiB R-CRAN-SparseM x86_64 1.84.2-1.fc41.copr7745418 copr_base 1.6 MiB R-CRAN-abind noarch 1.4.8-1.fc41.copr8016475 copr_base 96.2 KiB R-CRAN-ape x86_64 5.8.1-1.fc41.copr8396588 copr_base 4.1 MiB R-CRAN-askpass x86_64 1.2.1-1.fc41.copr8109609 copr_base 40.5 KiB R-CRAN-backports x86_64 1.5.0-1.fc41.copr7483453 copr_base 211.8 KiB R-CRAN-base64enc x86_64 0.1.3-1.fc41.copr8873392 copr_base 56.2 KiB 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fedora 985.0 KiB avahi-libs x86_64 0.8-29.fc41 fedora 166.3 KiB bzip2-devel x86_64 1.0.8-19.fc41 fedora 309.8 KiB cairo x86_64 1.18.2-2.fc41 updates 1.7 MiB cmake-filesystem x86_64 3.30.8-1.fc41 updates 0.0 B cpp x86_64 14.2.1-7.fc41 updates 34.5 MiB cups-filesystem noarch 1:2.4.12-2.fc41 updates 0.0 B cups-libs x86_64 1:2.4.12-2.fc41 updates 622.9 KiB dbus-libs x86_64 1:1.14.10-4.fc41 fedora 368.9 KiB default-fonts-core-sans noarch 4.1-2.fc41 fedora 11.9 KiB desktop-file-utils x86_64 0.27-2.fc41 fedora 230.4 KiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B flexiblas x86_64 3.4.5-1.fc41 updates 50.4 KiB flexiblas-devel x86_64 3.4.5-1.fc41 updates 4.9 MiB flexiblas-netlib x86_64 3.4.5-1.fc41 updates 10.9 MiB flexiblas-netlib64 x86_64 3.4.5-1.fc41 updates 10.9 MiB flexiblas-openblas-openmp x86_64 3.4.5-1.fc41 updates 43.3 KiB flexiblas-openblas-openmp64 x86_64 3.4.5-1.fc41 updates 43.3 KiB fontconfig x86_64 2.15.0-8.fc41 fedora 791.9 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B freetype x86_64 2.13.3-1.fc41 fedora 850.5 KiB fribidi x86_64 1.0.15-2.fc41 fedora 368.4 KiB gcc x86_64 14.2.1-7.fc41 updates 103.4 MiB gcc-c++ x86_64 14.2.1-7.fc41 updates 37.7 MiB gcc-gfortran x86_64 14.2.1-7.fc41 updates 36.8 MiB gcc-plugin-annobin x86_64 14.2.1-7.fc41 updates 59.6 KiB glib2 x86_64 2.82.5-1.fc41 updates 14.7 MiB glibc-devel x86_64 2.40-25.fc41 updates 2.3 MiB gnutls x86_64 3.8.9-2.fc41 updates 3.6 MiB google-noto-fonts-common noarch 20240701-2.fc41 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240701-2.fc41 fedora 1.2 MiB graphite2 x86_64 1.3.14-16.fc41 fedora 192.0 KiB groff-base x86_64 1.23.0-7.fc41 fedora 3.8 MiB harfbuzz x86_64 9.0.0-3.fc41 fedora 2.6 MiB java-21-openjdk x86_64 1:21.0.7.0.6-1.fc41 updates 1.0 MiB java-21-openjdk-devel x86_64 1:21.0.7.0.6-1.fc41 updates 11.2 MiB java-21-openjdk-headless x86_64 1:21.0.7.0.6-1.fc41 updates 202.0 MiB javapackages-filesystem noarch 6.2.0-14.fc41 fedora 1.9 KiB jbigkit-libs x86_64 2.1-30.fc41 fedora 117.6 KiB kernel-headers x86_64 6.14.3-200.fc41 updates 6.5 MiB less x86_64 668-1.fc41 updates 406.3 KiB libICE x86_64 1.1.2-1.fc41 updates 196.2 KiB libRmath x86_64 4.4.3-1.fc41 updates 250.8 KiB libRmath-devel x86_64 4.4.3-1.fc41 updates 17.4 KiB libSM x86_64 1.2.5-1.fc41 updates 99.6 KiB libX11 x86_64 1.8.11-1.fc41 updates 1.3 MiB libX11-common noarch 1.8.11-1.fc41 updates 1.2 MiB libX11-devel x86_64 1.8.11-1.fc41 updates 1.0 MiB libX11-xcb x86_64 1.8.11-1.fc41 updates 15.0 KiB libXau x86_64 1.0.11-7.fc41 fedora 66.9 KiB libXau-devel x86_64 1.0.11-7.fc41 fedora 6.4 KiB libXcomposite x86_64 0.4.6-4.fc41 fedora 44.5 KiB libXext x86_64 1.3.6-2.fc41 fedora 90.1 KiB libXft x86_64 2.3.8-7.fc41 fedora 164.5 KiB libXi x86_64 1.8.2-1.fc41 fedora 76.7 KiB libXmu x86_64 1.2.1-2.fc41 fedora 191.5 KiB libXrender x86_64 0.9.12-1.fc41 updates 48.8 KiB libXt x86_64 1.3.1-1.fc41 updates 429.9 KiB libXtst x86_64 1.2.5-1.fc41 fedora 33.6 KiB libdatrie x86_64 0.2.13-10.fc41 fedora 57.9 KiB libdeflate x86_64 1.23-1.fc41 updates 117.2 KiB libdeflate-devel x86_64 1.23-1.fc41 updates 25.9 KiB libfontenc x86_64 1.1.8-2.fc41 fedora 67.0 KiB libgfortran x86_64 14.2.1-7.fc41 updates 3.0 MiB libicu x86_64 74.2-2.fc41 fedora 34.9 MiB libicu-devel x86_64 74.2-2.fc41 fedora 5.6 MiB libjpeg-turbo x86_64 3.0.2-3.fc41 fedora 776.9 KiB liblerc x86_64 4.0.0-8.fc41 updates 607.5 KiB libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB libpng x86_64 2:1.6.40-4.fc41 fedora 245.8 KiB libquadmath x86_64 14.2.1-7.fc41 updates 323.5 KiB libquadmath-devel x86_64 14.2.1-7.fc41 updates 21.9 KiB libstdc++-devel x86_64 14.2.1-7.fc41 updates 15.4 MiB libthai x86_64 0.1.29-9.fc41 fedora 783.5 KiB libtiff x86_64 4.6.0-6.fc41 fedora 606.0 KiB libtirpc-devel x86_64 1.3.6-1.rc3.fc41 updates 251.6 KiB libwebp x86_64 1.5.0-1.fc41 updates 814.4 KiB libxcb x86_64 1.17.0-3.fc41 fedora 1.2 MiB libxcb-devel x86_64 1.17.0-3.fc41 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.38-7.fc41 updates 30.8 KiB lksctp-tools x86_64 1.0.20-1.fc41 updates 267.0 KiB make x86_64 1:4.4.1-8.fc41 fedora 1.8 MiB mkfontscale x86_64 1.2.3-1.fc41 fedora 49.2 KiB ncurses x86_64 6.5-2.20240629.fc41 fedora 627.3 KiB nettle x86_64 3.10-3.fc41 fedora 793.0 KiB nspr x86_64 4.36.0-6.fc41 updates 320.4 KiB nss x86_64 3.110.0-2.fc41 updates 1.9 MiB nss-softokn x86_64 3.110.0-2.fc41 updates 1.9 MiB nss-softokn-freebl x86_64 3.110.0-2.fc41 updates 845.2 KiB nss-sysinit x86_64 3.110.0-2.fc41 updates 22.2 KiB nss-util x86_64 3.110.0-2.fc41 updates 205.1 KiB openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB openblas-openmp64 x86_64 0.3.26-5.fc41 fedora 39.5 MiB pango x86_64 1.56.3-1.fc41 updates 1.0 MiB pcre2-devel x86_64 10.44-1.fc41.1 fedora 2.0 MiB pcre2-utf16 x86_64 10.44-1.fc41.1 fedora 590.1 KiB pcre2-utf32 x86_64 10.44-1.fc41.1 fedora 562.0 KiB perl-AutoLoader noarch 5.74-515.fc41 updates 20.5 KiB perl-B x86_64 1.89-515.fc41 updates 498.0 KiB perl-Carp noarch 1.54-511.fc41 fedora 46.6 KiB perl-Class-Struct noarch 0.68-515.fc41 updates 25.4 KiB perl-Data-Dumper x86_64 2.189-512.fc41 fedora 111.7 KiB perl-Digest noarch 1.20-511.fc41 fedora 35.3 KiB perl-Digest-MD5 x86_64 2.59-5.fc41 fedora 59.8 KiB perl-DynaLoader x86_64 1.56-515.fc41 updates 32.1 KiB perl-Encode x86_64 4:3.21-511.fc41 fedora 4.7 MiB perl-Errno x86_64 1.38-515.fc41 updates 8.3 KiB perl-Exporter noarch 5.78-511.fc41 fedora 54.3 KiB perl-Fcntl x86_64 1.18-515.fc41 updates 49.0 KiB perl-File-Basename noarch 2.86-515.fc41 updates 14.0 KiB perl-File-Path noarch 2.18-511.fc41 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.100-511.fc41 fedora 162.3 KiB perl-File-stat noarch 1.14-515.fc41 updates 12.5 KiB perl-FileHandle noarch 2.05-515.fc41 updates 9.3 KiB perl-Getopt-Long noarch 1:2.58-2.fc41 fedora 144.5 KiB perl-Getopt-Std noarch 1.14-515.fc41 updates 11.2 KiB perl-HTTP-Tiny noarch 0.090-1.fc41 updates 154.4 KiB perl-IO x86_64 1.55-515.fc41 updates 151.1 KiB perl-IO-Socket-IP noarch 0.43-1.fc41 updates 100.3 KiB perl-IO-Socket-SSL noarch 2.089-1.fc41 fedora 703.3 KiB perl-IPC-Open3 noarch 1.22-515.fc41 updates 22.5 KiB perl-MIME-Base32 noarch 1.303-21.fc41 fedora 30.7 KiB perl-MIME-Base64 x86_64 3.16-511.fc41 fedora 46.1 KiB perl-Net-SSLeay x86_64 1.94-7.fc41 fedora 1.3 MiB perl-POSIX x86_64 2.20-515.fc41 updates 235.1 KiB perl-PathTools x86_64 3.91-512.fc41 updates 184.1 KiB perl-Pod-Escapes noarch 1:1.07-511.fc41 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-512.fc41 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.45-511.fc41 fedora 560.9 KiB perl-Pod-Usage noarch 4:2.03-511.fc41 fedora 84.8 KiB perl-Scalar-List-Utils x86_64 5:1.68-1.fc41 updates 148.9 KiB perl-SelectSaver noarch 1.02-515.fc41 updates 2.2 KiB perl-Socket x86_64 4:2.038-511.fc41 fedora 124.0 KiB perl-Storable x86_64 1:3.32-511.fc41 fedora 232.4 KiB perl-Symbol noarch 1.09-515.fc41 updates 6.8 KiB perl-Term-ANSIColor noarch 5.01-512.fc41 fedora 97.5 KiB perl-Term-Cap noarch 1.18-511.fc41 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-511.fc41 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-511.fc41 fedora 22.6 KiB perl-Time-Local noarch 2:1.350-511.fc41 fedora 69.0 KiB perl-URI noarch 5.30-1.fc41 fedora 256.9 KiB perl-base noarch 2.27-515.fc41 updates 12.5 KiB perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB perl-if noarch 0.61.000-515.fc41 updates 5.8 KiB perl-interpreter x86_64 4:5.40.2-515.fc41 updates 122.4 KiB perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB perl-libs x86_64 4:5.40.2-515.fc41 updates 9.8 MiB perl-locale noarch 1.12-515.fc41 updates 6.5 KiB perl-mro x86_64 1.29-515.fc41 updates 45.6 KiB perl-overload noarch 1.37-515.fc41 updates 71.5 KiB perl-overloading noarch 0.02-515.fc41 updates 4.8 KiB perl-parent noarch 1:0.242-1.fc41 fedora 10.0 KiB perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB perl-vars noarch 1.05-515.fc41 updates 3.9 KiB pixman x86_64 0.44.2-1.fc41 updates 664.5 KiB tcl x86_64 1:8.6.14-5.fc41 updates 4.2 MiB tk x86_64 1:8.6.14-2.fc41 fedora 3.6 MiB tre x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 75.9 KiB tre-common noarch 0.8.0-45.20140228gitc2f5d13.fc41 fedora 81.0 KiB tre-devel x86_64 0.8.0-45.20140228gitc2f5d13.fc41 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-71.fc41 fedora 122.7 KiB tzdata-java noarch 2025b-1.fc41 updates 100.1 KiB xclip x86_64 0.13-22.git11cba61.fc41 fedora 62.4 KiB xdg-utils noarch 1.2.1-2.fc41 fedora 346.3 KiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-39.fc41 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB xz-devel x86_64 1:5.8.1-2.fc41 updates 258.8 KiB zlib-ng-compat-devel x86_64 2.2.3-2.fc41 updates 107.0 KiB Transaction Summary: Installing: 337 packages Total size of inbound packages is 412 MiB. 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R-CRAN-minqa-0:1.2.8-1.fc41.c 100% | 4.5 MiB/s | 130.4 KiB | 00m00s [244/337] R-CRAN-boot-0:1.3.31-1.fc41.c 100% | 20.0 MiB/s | 716.1 KiB | 00m00s [245/337] R-CRAN-nloptr-0:2.2.1-1.fc41. 100% | 13.7 MiB/s | 561.0 KiB | 00m00s [246/337] R-CRAN-reformulas-0:0.4.1-1.f 100% | 6.2 MiB/s | 145.0 KiB | 00m00s [247/337] R-CRAN-glmnet-0:4.1.8-1.fc41. 100% | 18.7 MiB/s | 1.9 MiB | 00m00s [248/337] R-CRAN-mitml-0:0.4.5-1.fc41.c 100% | 4.6 MiB/s | 534.5 KiB | 00m00s [249/337] R-CRAN-numDeriv-0:2016.8.1.1- 100% | 1.1 MiB/s | 128.2 KiB | 00m00s [250/337] R-CRAN-MatrixModels-0:0.5.4-1 100% | 12.4 MiB/s | 369.7 KiB | 00m00s [251/337] R-CRAN-SparseM-0:1.84.2-1.fc4 100% | 14.1 MiB/s | 851.8 KiB | 00m00s [252/337] R-CRAN-fs-0:1.6.6-1.fc41.copr 100% | 3.5 MiB/s | 330.6 KiB | 00m00s [253/337] R-CRAN-rappdirs-0:0.3.3-1.fc4 100% | 290.9 KiB/s | 61.4 KiB | 00m00s [254/337] R-CRAN-sys-0:3.4.3-1.fc41.cop 100% | 258.9 KiB/s | 58.0 KiB | 00m00s [255/337] R-CRAN-survival-0:3.8.3-1.fc4 100% | 20.8 MiB/s | 8.0 MiB | 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100% | 989.8 KiB/s | 84.1 KiB | 00m00s [282/337] R-CRAN-modelr-0:0.1.11-1.fc41 100% | 14.4 MiB/s | 221.0 KiB | 00m00s [283/337] perl-PathTools-0:3.91-512.fc4 100% | 2.5 MiB/s | 87.3 KiB | 00m00s [284/337] perl-DynaLoader-0:1.56-515.fc 100% | 635.9 KiB/s | 26.1 KiB | 00m00s [285/337] perl-constant-0:1.33-512.fc41 100% | 921.2 KiB/s | 23.0 KiB | 00m00s [286/337] perl-Getopt-Long-1:2.58-2.fc4 100% | 1.6 MiB/s | 63.9 KiB | 00m00s [287/337] perl-MIME-Base64-0:3.16-511.f 100% | 1.1 MiB/s | 29.9 KiB | 00m00s [288/337] perl-Errno-0:1.38-515.fc41.x8 100% | 111.7 KiB/s | 15.0 KiB | 00m00s [289/337] perl-Storable-1:3.32-511.fc41 100% | 2.5 MiB/s | 98.4 KiB | 00m00s [290/337] perl-Pod-Usage-4:2.03-511.fc4 100% | 1.9 MiB/s | 40.0 KiB | 00m00s [291/337] perl-Text-ParseWords-0:3.31-5 100% | 720.7 KiB/s | 16.6 KiB | 00m00s [292/337] perl-Pod-Perldoc-0:3.28.01-51 100% | 3.4 MiB/s | 86.1 KiB | 00m00s [293/337] perl-podlators-1:6.0.2-2.fc41 100% | 4.5 MiB/s | 128.9 KiB | 00m00s [294/337] perl-parent-1:0.242-1.fc41.no 100% | 123.0 KiB/s | 15.0 KiB | 00m00s [295/337] perl-File-Temp-1:0.231.100-51 100% | 821.1 KiB/s | 59.1 KiB | 00m00s [296/337] groff-base-0:1.23.0-7.fc41.x8 100% | 14.1 MiB/s | 1.1 MiB | 00m00s [297/337] perl-Term-ANSIColor-0:5.01-51 100% | 2.3 MiB/s | 47.7 KiB | 00m00s [298/337] perl-Term-Cap-0:1.18-511.fc41 100% | 1.1 MiB/s | 22.1 KiB | 00m00s [299/337] perl-File-Path-0:2.18-511.fc4 100% | 1.7 MiB/s | 35.3 KiB | 00m00s [300/337] perl-Pod-Escapes-1:1.07-511.f 100% | 1.0 MiB/s | 19.8 KiB | 00m00s [301/337] perl-Text-Tabs+Wrap-0:2024.00 100% | 1.1 MiB/s | 21.9 KiB | 00m00s [302/337] perl-Pod-Simple-1:3.45-511.fc 100% | 1.9 MiB/s | 219.0 KiB | 00m00s [303/337] ncurses-0:6.5-2.20240629.fc41 100% | 17.2 MiB/s | 423.8 KiB | 00m00s [304/337] perl-vars-0:1.05-515.fc41.noa 100% | 383.1 KiB/s | 13.0 KiB | 00m00s [305/337] perl-Encode-4:3.21-511.fc41.x 100% | 2.3 MiB/s | 1.1 MiB | 00m00s [306/337] perl-Scalar-List-Utils-5:1.68 100% | 1.2 MiB/s | 74.2 KiB | 00m00s [307/337] perl-File-Basename-0:2.86-515 100% | 521.0 KiB/s | 17.2 KiB | 00m00s [308/337] perl-Fcntl-0:1.18-515.fc41.x8 100% | 727.4 KiB/s | 29.8 KiB | 00m00s [309/337] perl-IO-0:1.55-515.fc41.x86_6 100% | 2.4 MiB/s | 81.9 KiB | 00m00s [310/337] perl-Socket-4:2.038-511.fc41. 100% | 2.7 MiB/s | 54.8 KiB | 00m00s [311/337] perl-Symbol-0:1.09-515.fc41.n 100% | 374.3 KiB/s | 14.2 KiB | 00m00s [312/337] perl-if-0:0.61.000-515.fc41.n 100% | 412.3 KiB/s | 14.0 KiB | 00m00s [313/337] perl-POSIX-0:2.20-515.fc41.x8 100% | 934.8 KiB/s | 97.2 KiB | 00m00s [314/337] perl-IO-Socket-SSL-0:2.089-1. 100% | 9.4 MiB/s | 231.2 KiB | 00m00s [315/337] perl-HTTP-Tiny-0:0.090-1.fc41 100% | 1.6 MiB/s | 56.5 KiB | 00m00s [316/337] perl-overload-0:1.37-515.fc41 100% | 1.0 MiB/s | 45.6 KiB | 00m00s [317/337] perl-Net-SSLeay-0:1.94-7.fc41 100% | 14.1 MiB/s | 375.7 KiB | 00m00s [318/337] perl-Time-Local-2:1.350-511.f 100% | 1.1 MiB/s | 34.5 KiB | 00m00s [319/337] perl-Data-Dumper-0:2.189-512. 100% | 2.8 MiB/s | 56.3 KiB | 00m00s [320/337] perl-URI-0:5.30-1.fc41.noarch 100% | 3.8 MiB/s | 140.8 KiB | 00m00s [321/337] perl-libnet-0:3.15-512.fc41.n 100% | 6.3 MiB/s | 128.5 KiB | 00m00s [322/337] perl-MIME-Base32-0:1.303-21.f 100% | 682.4 KiB/s | 20.5 KiB | 00m00s [323/337] perl-Digest-MD5-0:2.59-5.fc41 100% | 1.4 MiB/s | 36.0 KiB | 00m00s [324/337] perl-Digest-0:1.20-511.fc41.n 100% | 1.3 MiB/s | 24.9 KiB | 00m00s [325/337] perl-IPC-Open3-0:1.22-515.fc4 100% | 575.6 KiB/s | 21.9 KiB | 00m00s [326/337] perl-AutoLoader-0:5.74-515.fc 100% | 644.2 KiB/s | 21.3 KiB | 00m00s [327/337] perl-IO-Socket-IP-0:0.43-1.fc 100% | 1.0 MiB/s | 42.2 KiB | 00m00s [328/337] perl-base-0:2.27-515.fc41.noa 100% | 438.7 KiB/s | 16.2 KiB | 00m00s [329/337] perl-Getopt-Std-0:1.14-515.fc 100% | 461.9 KiB/s | 15.7 KiB | 00m00s [330/337] perl-mro-0:1.29-515.fc41.x86_ 100% | 730.8 KiB/s | 30.0 KiB | 00m00s [331/337] perl-overloading-0:0.02-515.f 100% | 258.4 KiB/s | 12.9 KiB | 00m00s [332/337] perl-B-0:1.89-515.fc41.x86_64 100% | 2.4 MiB/s | 176.2 KiB | 00m00s [333/337] perl-locale-0:1.12-515.fc41.n 100% | 378.9 KiB/s | 13.6 KiB | 00m00s [334/337] perl-File-stat-0:1.14-515.fc4 100% | 517.5 KiB/s | 17.1 KiB | 00m00s [335/337] perl-SelectSaver-0:1.02-515.f 100% | 355.9 KiB/s | 11.7 KiB | 00m00s [336/337] perl-Class-Struct-0:0.68-515. 100% | 566.4 KiB/s | 22.1 KiB | 00m00s [337/337] perl-FileHandle-0:2.05-515.fc 100% | 443.3 KiB/s | 15.5 KiB | 00m00s -------------------------------------------------------------------------------- [337/337] Total 100% | 29.8 MiB/s | 154.3 MiB | 00m05s Running transaction [ 1/339] Verify package files 100% | 230.0 B/s | 337.0 B | 00m01s >>> Running pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.7.0.6-1.f >>> Finished pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.7.0.6-1. >>> [RPM] /var/lib/mock/fedora-41-x86_64-1747795026.939987/root/var/cache/dnf/co [ 2/339] Prepare transaction 100% | 800.0 B/s | 337.0 B | 00m00s [ 3/339] Installing libgfortran-0:14.2 100% | 274.9 MiB/s | 3.0 MiB | 00m00s [ 4/339] Installing nspr-0:4.36.0-6.fc 100% | 104.9 MiB/s | 322.2 KiB | 00m00s [ 5/339] Installing nss-util-0:3.110.0 100% | 100.6 MiB/s | 206.1 KiB | 00m00s [ 6/339] Installing libmpc-0:1.3.1-6.f 100% | 81.1 MiB/s | 166.2 KiB | 00m00s [ 7/339] Installing libquadmath-0:14.2 100% | 158.6 MiB/s | 324.7 KiB | 00m00s [ 8/339] Installing fonts-filesystem-1 100% | 0.0 B/s | 788.0 B | 00m00s [ 9/339] Installing libpng-2:1.6.40-4. 100% | 120.6 MiB/s | 247.1 KiB | 00m00s [ 10/339] Installing libicu-0:74.2-2.fc 100% | 306.6 MiB/s | 35.0 MiB | 00m00s [ 11/339] Installing cmake-filesystem-0 100% | 2.4 MiB/s | 7.3 KiB | 00m00s [ 12/339] Installing libdeflate-0:1.23- 100% | 57.9 MiB/s | 118.6 KiB | 00m00s [ 13/339] Installing xorg-x11-proto-dev 100% | 137.1 MiB/s | 1.8 MiB | 00m00s [ 14/339] Installing libICE-0:1.1.2-1.f 100% | 96.5 MiB/s | 197.6 KiB | 00m00s [ 15/339] Installing openblas-0:0.3.26- 100% | 47.8 MiB/s | 97.8 KiB | 00m00s [ 16/339] Installing tcl-1:8.6.14-5.fc4 100% | 184.2 MiB/s | 4.2 MiB | 00m00s [ 17/339] Installing libXau-0:1.0.11-7. 100% | 66.8 MiB/s | 68.4 KiB | 00m00s [ 18/339] Installing libxcb-0:1.17.0-3. 100% | 132.0 MiB/s | 1.2 MiB | 00m00s [ 19/339] Installing make-1:4.4.1-8.fc4 100% | 180.0 MiB/s | 1.8 MiB | 00m00s [ 20/339] Installing libjpeg-turbo-0:3. 100% | 253.5 MiB/s | 778.7 KiB | 00m00s [ 21/339] Installing libRmath-0:4.4.3-1 100% | 122.9 MiB/s | 251.8 KiB | 00m00s [ 22/339] Installing libRmath-devel-0:4 100% | 0.0 B/s | 17.7 KiB | 00m00s [ 23/339] Installing libXau-devel-0:1.0 100% | 1.3 MiB/s | 8.2 KiB | 00m00s [ 24/339] Installing libxcb-devel-0:1.1 100% | 32.3 MiB/s | 3.1 MiB | 00m00s [ 25/339] Installing openblas-openmp-0: 100% | 463.2 MiB/s | 39.4 MiB | 00m00s [ 26/339] Installing flexiblas-0:3.4.5- 100% | 50.4 MiB/s | 51.6 KiB | 00m00s [ 27/339] Installing flexiblas-openblas 100% | 43.1 MiB/s | 44.1 KiB | 00m00s [ 28/339] Installing flexiblas-netlib-0 100% | 310.2 MiB/s | 10.9 MiB | 00m00s [ 29/339] Installing openblas-openmp64- 100% | 470.6 MiB/s | 39.5 MiB | 00m00s [ 30/339] Installing flexiblas-netlib64 100% | 321.7 MiB/s | 10.9 MiB | 00m00s [ 31/339] Installing flexiblas-openblas 100% | 43.1 MiB/s | 44.2 KiB | 00m00s [ 32/339] Installing flexiblas-devel-0: 100% | 446.7 MiB/s | 4.9 MiB | 00m00s [ 33/339] Installing libSM-0:1.2.5-1.fc 100% | 98.6 MiB/s | 100.9 KiB | 00m00s [ 34/339] Installing libdeflate-devel-0 100% | 26.6 MiB/s | 27.3 KiB | 00m00s [ 35/339] Installing zlib-ng-compat-dev 100% | 53.0 MiB/s | 108.5 KiB | 00m00s [ 36/339] Installing libicu-devel-0:74. 100% | 156.7 MiB/s | 5.6 MiB | 00m00s [ 37/339] Installing abattis-cantarell- 100% | 94.9 MiB/s | 194.4 KiB | 00m00s [ 38/339] Installing cpp-0:14.2.1-7.fc4 100% | 305.8 MiB/s | 34.6 MiB | 00m00s [ 39/339] Installing nss-softokn-freebl 100% | 165.5 MiB/s | 847.4 KiB | 00m00s [ 40/339] Installing nss-softokn-0:3.11 100% | 269.6 MiB/s | 1.9 MiB | 00m00s [ 41/339] Installing nss-sysinit-0:3.11 100% | 11.4 MiB/s | 23.3 KiB | 00m00s [ 42/339] Installing nss-0:3.110.0-2.fc 100% | 78.6 MiB/s | 1.9 MiB | 00m00s [ 43/339] Installing annobin-docs-0:12. 100% | 24.1 MiB/s | 98.8 KiB | 00m00s [ 44/339] Installing kernel-headers-0:6 100% | 106.2 MiB/s | 6.7 MiB | 00m00s [ 45/339] Installing libxcrypt-devel-0: 100% | 10.8 MiB/s | 33.1 KiB | 00m00s [ 46/339] Installing glibc-devel-0:2.40 100% | 83.0 MiB/s | 2.3 MiB | 00m00s [ 47/339] Installing gcc-0:14.2.1-7.fc4 100% | 310.5 MiB/s | 103.4 MiB | 00m00s [ 48/339] Installing libquadmath-devel- 100% | 11.4 MiB/s | 23.4 KiB | 00m00s [ 49/339] Installing gcc-gfortran-0:14. 100% | 299.1 MiB/s | 36.8 MiB | 00m00s [ 50/339] Installing pixman-0:0.44.2-1. 100% | 130.0 MiB/s | 665.6 KiB | 00m00s [ 51/339] Installing libstdc++-devel-0: 100% | 216.3 MiB/s | 15.6 MiB | 00m00s [ 52/339] Installing gcc-c++-0:14.2.1-7 100% | 313.8 MiB/s | 37.7 MiB | 00m00s [ 53/339] Installing tzdata-java-0:2025 100% | 98.1 MiB/s | 100.5 KiB | 00m00s [ 54/339] Installing lksctp-tools-0:1.0 100% | 66.3 MiB/s | 271.5 KiB | 00m00s [ 55/339] Installing dbus-libs-1:1.14.1 100% | 180.7 MiB/s | 370.0 KiB | 00m00s [ 56/339] Installing avahi-libs-0:0.8-2 100% | 82.5 MiB/s | 168.9 KiB | 00m00s [ 57/339] Installing cups-filesystem-1: 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [ 58/339] Installing alsa-lib-0:1.2.14- 100% | 141.1 MiB/s | 1.4 MiB | 00m00s [ 59/339] Installing libX11-xcb-0:1.8.1 100% | 15.5 MiB/s | 15.9 KiB | 00m00s [ 60/339] Installing libdatrie-0:0.2.13 100% | 57.7 MiB/s | 59.0 KiB | 00m00s [ 61/339] Installing libthai-0:0.1.29-9 100% | 191.7 MiB/s | 785.3 KiB | 00m00s [ 62/339] Installing fribidi-0:1.0.15-2 100% | 181.1 MiB/s | 370.9 KiB | 00m00s [ 63/339] Installing less-0:668-1.fc41. 100% | 133.3 MiB/s | 409.6 KiB | 00m00s [ 64/339] Installing pcre2-utf32-0:10.4 100% | 274.8 MiB/s | 562.8 KiB | 00m00s [ 65/339] Installing pcre2-utf16-0:10.4 100% | 192.4 MiB/s | 590.9 KiB | 00m00s [ 66/339] Installing pcre2-devel-0:10.4 100% | 153.5 MiB/s | 2.0 MiB | 00m00s [ 67/339] Installing bzip2-devel-0:1.0. 100% | 303.5 MiB/s | 310.7 KiB | 00m00s [ 68/339] Installing xz-devel-1:5.8.1-2 100% | 85.5 MiB/s | 262.6 KiB | 00m00s [ 69/339] Installing libtirpc-devel-0:1 100% | 51.4 MiB/s | 263.1 KiB | 00m00s [ 70/339] Installing libfontenc-0:1.1.8 100% | 66.8 MiB/s | 68.4 KiB | 00m00s [ 71/339] Installing javapackages-files 100% | 5.2 MiB/s | 5.3 KiB | 00m00s [ 72/339] Installing nettle-0:3.10-3.fc 100% | 155.5 MiB/s | 796.1 KiB | 00m00s [ 73/339] Installing gnutls-0:3.8.9-2.f 100% | 239.1 MiB/s | 3.6 MiB | 00m00s [ 74/339] Installing glib2-0:2.82.5-1.f 100% | 267.1 MiB/s | 14.7 MiB | 00m00s [ 75/339] Installing cups-libs-1:2.4.12 100% | 152.5 MiB/s | 624.5 KiB | 00m00s [ 76/339] Installing java-21-openjdk-he 100% | 336.7 MiB/s | 202.0 MiB | 00m01s [ 77/339] Installing ncurses-0:6.5-2.20 100% | 25.8 MiB/s | 633.9 KiB | 00m00s [ 78/339] Installing groff-base-0:1.23. 100% | 90.1 MiB/s | 3.9 MiB | 00m00s [ 79/339] Installing perl-Digest-0:1.20 100% | 36.2 MiB/s | 37.1 KiB | 00m00s [ 80/339] Installing perl-Digest-MD5-0: 100% | 30.1 MiB/s | 61.7 KiB | 00m00s [ 81/339] Installing perl-B-0:1.89-515. 100% | 122.4 MiB/s | 501.4 KiB | 00m00s [ 82/339] Installing perl-FileHandle-0: 100% | 0.0 B/s | 9.8 KiB | 00m00s [ 83/339] Installing perl-MIME-Base32-0 100% | 31.4 MiB/s | 32.2 KiB | 00m00s [ 84/339] Installing perl-Data-Dumper-0 100% | 55.5 MiB/s | 113.6 KiB | 00m00s [ 85/339] Installing perl-libnet-0:3.15 100% | 95.9 MiB/s | 294.7 KiB | 00m00s [ 86/339] Installing perl-AutoLoader-0: 100% | 0.0 B/s | 20.9 KiB | 00m00s [ 87/339] Installing perl-IO-Socket-IP- 100% | 49.9 MiB/s | 102.2 KiB | 00m00s [ 88/339] Installing perl-URI-0:5.30-1. 100% | 43.9 MiB/s | 269.5 KiB | 00m00s [ 89/339] Installing perl-Text-Tabs+Wra 100% | 23.3 MiB/s | 23.9 KiB | 00m00s [ 90/339] Installing perl-Pod-Escapes-1 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 91/339] Installing perl-File-Path-0:2 100% | 63.0 MiB/s | 64.5 KiB | 00m00s [ 92/339] Installing perl-if-0:0.61.000 100% | 0.0 B/s | 6.2 KiB | 00m00s [ 93/339] Installing perl-Time-Local-2: 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [ 94/339] Installing perl-Net-SSLeay-0: 100% | 136.3 MiB/s | 1.4 MiB | 00m00s [ 95/339] Installing perl-locale-0:1.12 100% | 0.0 B/s | 6.9 KiB | 00m00s [ 96/339] Installing perl-IO-Socket-SSL 100% | 172.7 MiB/s | 707.4 KiB | 00m00s [ 97/339] Installing perl-Term-ANSIColo 100% | 96.9 MiB/s | 99.2 KiB | 00m00s [ 98/339] Installing perl-Term-Cap-0:1. 100% | 29.9 MiB/s | 30.6 KiB | 00m00s [ 99/339] Installing perl-POSIX-0:2.20- 100% | 115.4 MiB/s | 236.4 KiB | 00m00s [100/339] Installing perl-File-Temp-1:0 100% | 80.1 MiB/s | 164.1 KiB | 00m00s [101/339] Installing perl-IPC-Open3-0:1 100% | 22.7 MiB/s | 23.3 KiB | 00m00s [102/339] Installing perl-Class-Struct- 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [103/339] Installing perl-HTTP-Tiny-0:0 100% | 76.4 MiB/s | 156.4 KiB | 00m00s [104/339] Installing perl-Pod-Simple-1: 100% | 111.4 MiB/s | 570.5 KiB | 00m00s [105/339] Installing perl-Socket-4:2.03 100% | 61.6 MiB/s | 126.1 KiB | 00m00s [106/339] Installing perl-Symbol-0:1.09 100% | 0.0 B/s | 7.2 KiB | 00m00s [107/339] Installing perl-SelectSaver-0 100% | 0.0 B/s | 2.6 KiB | 00m00s [108/339] Installing perl-File-stat-0:1 100% | 12.7 MiB/s | 13.1 KiB | 00m00s [109/339] Installing perl-Pod-Perldoc-0 100% | 55.1 MiB/s | 169.3 KiB | 00m00s [110/339] Installing perl-podlators-1:6 100% | 157.0 MiB/s | 321.4 KiB | 00m00s [111/339] Installing perl-Text-ParseWor 100% | 14.2 MiB/s | 14.6 KiB | 00m00s [112/339] Installing perl-Fcntl-0:1.18- 100% | 48.9 MiB/s | 50.1 KiB | 00m00s [113/339] Installing perl-base-0:2.27-5 100% | 0.0 B/s | 12.9 KiB | 00m00s [114/339] Installing perl-mro-0:1.29-51 100% | 45.6 MiB/s | 46.7 KiB | 00m00s [115/339] Installing perl-overloading-0 100% | 5.4 MiB/s | 5.5 KiB | 00m00s [116/339] Installing perl-IO-0:1.55-515 100% | 50.6 MiB/s | 155.4 KiB | 00m00s [117/339] Installing perl-Pod-Usage-4:2 100% | 84.3 MiB/s | 86.3 KiB | 00m00s [118/339] Installing perl-Errno-0:1.38- 100% | 0.0 B/s | 8.7 KiB | 00m00s [119/339] Installing perl-constant-0:1. 100% | 26.7 MiB/s | 27.4 KiB | 00m00s [120/339] Installing perl-MIME-Base64-0 100% | 23.6 MiB/s | 48.4 KiB | 00m00s [121/339] Installing perl-parent-1:0.24 100% | 10.5 MiB/s | 10.7 KiB | 00m00s [122/339] Installing perl-Scalar-List-U 100% | 49.7 MiB/s | 152.6 KiB | 00m00s [123/339] Installing perl-vars-0:1.05-5 100% | 0.0 B/s | 4.3 KiB | 00m00s [124/339] Installing perl-File-Basename 100% | 0.0 B/s | 14.6 KiB | 00m00s [125/339] Installing perl-Getopt-Std-0: 100% | 11.5 MiB/s | 11.7 KiB | 00m00s [126/339] Installing perl-overload-0:1. 100% | 70.3 MiB/s | 71.9 KiB | 00m00s [127/339] Installing perl-Storable-1:3. 100% | 114.3 MiB/s | 234.0 KiB | 00m00s [128/339] Installing perl-Getopt-Long-1 100% | 71.9 MiB/s | 147.2 KiB | 00m00s [129/339] Installing perl-Carp-0:1.54-5 100% | 46.6 MiB/s | 47.7 KiB | 00m00s [130/339] Installing perl-Exporter-0:5. 100% | 54.3 MiB/s | 55.6 KiB | 00m00s [131/339] Installing perl-PathTools-0:3 100% | 61.4 MiB/s | 188.6 KiB | 00m00s [132/339] Installing perl-DynaLoader-0: 100% | 31.7 MiB/s | 32.5 KiB | 00m00s [133/339] Installing perl-Encode-4:3.21 100% | 224.7 MiB/s | 4.7 MiB | 00m00s [134/339] Installing perl-libs-4:5.40.2 100% | 150.1 MiB/s | 9.9 MiB | 00m00s [135/339] Installing perl-interpreter-4 100% | 121.2 MiB/s | 124.1 KiB | 00m00s [136/339] Installing libwebp-0:1.5.0-1. 100% | 159.9 MiB/s | 818.6 KiB | 00m00s [137/339] Installing liblerc-0:4.0.0-8. 100% | 198.3 MiB/s | 609.0 KiB | 00m00s [138/339] Installing libX11-common-0:1. 100% | 66.0 MiB/s | 1.2 MiB | 00m00s [139/339] Installing libX11-0:1.8.11-1. 100% | 256.3 MiB/s | 1.3 MiB | 00m00s [140/339] Installing libXext-0:1.3.6-2. 100% | 89.2 MiB/s | 91.3 KiB | 00m00s [141/339] Installing libXrender-0:0.9.1 100% | 48.8 MiB/s | 50.0 KiB | 00m00s [142/339] Installing libXi-0:1.8.2-1.fc 100% | 76.0 MiB/s | 77.8 KiB | 00m00s [143/339] Installing libXt-0:1.3.1-1.fc 100% | 210.5 MiB/s | 431.1 KiB | 00m00s [144/339] Installing libXmu-0:1.2.1-2.f 100% | 94.5 MiB/s | 193.5 KiB | 00m00s [145/339] Installing xclip-0:0.13-22.gi 100% | 62.8 MiB/s | 64.3 KiB | 00m00s [146/339] Installing libXtst-0:1.2.5-1. 100% | 33.8 MiB/s | 34.7 KiB | 00m00s [147/339] Installing libXcomposite-0:0. 100% | 15.0 MiB/s | 46.1 KiB | 00m00s [148/339] Installing libX11-devel-0:1.8 100% | 32.9 MiB/s | 1.1 MiB | 00m00s [149/339] Installing graphite2-0:1.3.14 100% | 63.2 MiB/s | 194.1 KiB | 00m00s [150/339] Installing harfbuzz-0:9.0.0-3 100% | 240.9 MiB/s | 2.7 MiB | 00m00s [151/339] Installing freetype-0:2.13.3- 100% | 166.4 MiB/s | 852.2 KiB | 00m00s [152/339] Installing mkfontscale-0:1.2. 100% | 49.4 MiB/s | 50.6 KiB | 00m00s [153/339] Installing ttmkfdir-0:3.0.9-7 100% | 60.4 MiB/s | 123.8 KiB | 00m00s [154/339] Installing google-noto-fonts- 100% | 17.8 MiB/s | 18.3 KiB | 00m00s [155/339] Installing google-noto-sans-v 100% | 249.8 MiB/s | 1.2 MiB | 00m00s [156/339] Installing default-fonts-core 100% | 8.9 MiB/s | 18.2 KiB | 00m00s [157/339] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [158/339] Installing desktop-file-utils 100% | 76.2 MiB/s | 234.2 KiB | 00m00s [159/339] Installing xdg-utils-0:1.2.1- 100% | 22.8 MiB/s | 349.5 KiB | 00m00s [160/339] Installing xml-common-0:0.6.3 100% | 26.4 MiB/s | 81.1 KiB | 00m00s [161/339] Installing fontconfig-0:2.15. 100% | 771.8 KiB/s | 811.1 KiB | 00m01s [162/339] Installing libXft-0:2.3.8-7.f 100% | 81.1 MiB/s | 166.0 KiB | 00m00s [163/339] Installing cairo-0:1.18.2-2.f 100% | 216.2 MiB/s | 1.7 MiB | 00m00s [164/339] Installing pango-0:1.56.3-1.f 100% | 43.6 MiB/s | 1.0 MiB | 00m00s [165/339] Installing tk-1:8.6.14-2.fc41 100% | 140.8 MiB/s | 3.7 MiB | 00m00s [166/339] Installing xorg-x11-fonts-Typ 100% | 12.1 MiB/s | 865.6 KiB | 00m00s [167/339] Installing java-21-openjdk-1: 100% | 42.0 MiB/s | 1.1 MiB | 00m00s [168/339] Installing java-21-openjdk-de 100% | 196.8 MiB/s | 11.2 MiB | 00m00s 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MiB | 00m00s [322/339] Installing R-CRAN-weights-0:1 100% | 51.6 MiB/s | 264.1 KiB | 00m00s [323/339] Installing R-CRAN-Deriv-0:4.1 100% | 60.8 MiB/s | 186.6 KiB | 00m00s [324/339] Installing R-CRAN-microbenchm 100% | 25.0 MiB/s | 127.9 KiB | 00m00s [325/339] Installing R-CRAN-doBy-0:4.6. 100% | 199.0 MiB/s | 5.2 MiB | 00m00s [326/339] Installing R-CRAN-pbkrtest-0: 100% | 41.2 MiB/s | 379.3 KiB | 00m00s [327/339] Installing R-CRAN-car-0:3.1.3 100% | 84.6 MiB/s | 2.2 MiB | 00m00s [328/339] Installing R-CRAN-rstatix-0:0 100% | 67.7 MiB/s | 970.2 KiB | 00m00s [329/339] Installing R-CRAN-ggpubr-0:0. 100% | 153.1 MiB/s | 2.6 MiB | 00m00s [330/339] Installing R-CRAN-smacof-0:2. 100% | 115.3 MiB/s | 1.8 MiB | 00m00s [331/339] Installing R-CRAN-plotly-0:4. 100% | 143.4 MiB/s | 6.7 MiB | 00m00s [332/339] Installing R-devel-0:4.4.3-1. 100% | 0.0 B/s | 124.0 B | 00m00s [333/339] Installing R-CRAN-vcfR-0:1.15 100% | 122.5 MiB/s | 2.3 MiB | 00m00s [334/339] Installing R-CRAN-reshape2-0: 100% | 36.9 MiB/s | 226.8 KiB | 00m00s [335/339] Installing R-CRAN-dendextend- 100% | 180.9 MiB/s | 7.4 MiB | 00m00s [336/339] Installing R-CRAN-princurve-0 100% | 30.6 MiB/s | 188.2 KiB | 00m00s [337/339] Installing R-CRAN-rebus-0:0.1 100% | 12.6 MiB/s | 567.9 KiB | 00m00s [338/339] Installing gcc-plugin-annobin 100% | 2.1 MiB/s | 61.1 KiB | 00m00s [339/339] Installing annobin-plugin-gcc 100% | 1.8 MiB/s | 986.7 KiB | 00m01s Warning: skipped OpenPGP checks for 157 packages from repository: copr_base Complete! Finish: build setup for R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm Start: rpmbuild R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.Zm8XTj Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.T9ppjJ + umask 022 + cd /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build + cd /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build + rm -rf onemap + /usr/bin/mkdir -p onemap + cd onemap + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/onemap_3.2.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d onemap/src ']' + find onemap/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d onemap/src ']' + find onemap/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.O01OHv + umask 022 + cd /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd onemap + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.iZmsaw + umask 022 + cd /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build + '[' /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build + mkdir /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd onemap + mkdir -p /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT/usr/local/lib/R/library onemap * installing *source* package ‘onemap’ ... ** package ‘onemap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’ using C++ compiler: ‘g++ (GCC) 14.2.1 20250110 (Red Hat 14.2.1-7)’ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c find_bins.cpp -o find_bins.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c hmm_bc.cpp -o hmm_bc.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c hmm_f2.cpp -o hmm_f2.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c hmm_out.cpp -o hmm_out.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c onemap_init.c -o onemap_init.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c out_est.cpp -o out_est.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c twopts_bc.cpp -o twopts_bc.o twopts_bc.cpp: In function ‘Rcpp::NumericMatrix est_rf_bc(Rcpp::NumericVector, int, int, int, int)’: twopts_bc.cpp:117:27: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 117 | if(k_sub.size() != n_ind || k1_sub.size() != n_ind) { | ~~~~~~~~~~~~~^~~~~~~~ twopts_bc.cpp:117:53: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 117 | if(k_sub.size() != n_ind || k1_sub.size() != n_ind) { | ~~~~~~~~~~~~~~^~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c twopts_out.cpp -o twopts_out.o twopts_out.cpp: In function ‘Rcpp::List est_rf_out(Rcpp::NumericVector, int, Rcpp::IntegerVector, int, int)’: twopts_out.cpp:122:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 122 | if(k_sub.size() != n_ind || k1_sub.size() != n_ind) { | ~~~~~~~~~~~~~^~~~~~~~ twopts_out.cpp:122:47: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 122 | if(k_sub.size() != n_ind || k1_sub.size() != n_ind) { | ~~~~~~~~~~~~~~^~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utils.cpp -o utils.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o onemap.so find_bins.o hmm_bc.o hmm_f2.o hmm_out.o onemap_init.o out_est.o twopts_bc.o twopts_out.o utils.o -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT/usr/local/lib/R/library/00LOCK-onemap/00new/onemap/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘onemap’ finding HTML links ... done Bonferroni_alpha html acum html add_marker html add_redundants html check_data html check_twopts html combine_onemap html compare html create_data_bins html create_dataframe_for_plot_outcross html create_depths_profile html create_probs html draw_map html draw_map2 html drop_marker html edit_order_onemap html empty_onemap_obj html est_map_hmm_out html export_mappoly_genoprob html export_viewpoly html extract_depth html filter_2pts_gaps html filter_missing html filter_prob html find_bins html generate_overlapping_batches html group html group_seq html group_upgma html haldane html keep_only_selected_mks html kosambi html load_onemap_sequences html make_seq html map html map_avoid_unlinked html map_overlapping_batches html map_save_ram html mapmaker_example_f2 html marker_type html mds_onemap html onemap_example_bc html onemap_example_f2 html onemap_example_out html onemap_example_riself html onemap_read_vcfR html ord_by_geno html order_seq html parents_haplotypes html pick_batch_sizes html plot.group.upgma html plot.onemap html plot.onemap_progeny_haplotypes html plot.onemap_progeny_haplotypes_counts html plot.onemap_segreg_test html plot_by_segreg_type html plot_genome_vs_cm html print.compare html print.group html print.group.upgma html print.group_seq html print.onemap html print.onemap_bin html print.onemap_segreg_test html print.order html print.rf_2pts html print.sequence html print.try html progeny_haplotypes html progeny_haplotypes_counts html rcd html read_mapmaker html read_onemap html record html remove_inds html rf_2pts html rf_graph_table html rf_snp_filter_onemap html ripple_seq html rm_dupli_mks html save_onemap_sequences html seeded_map html select_segreg html seq_by_type html seriation html set_map_fun html simu_example_bc html simu_example_f2 html simu_example_out html sort_by_pos html split_2pts html split_onemap html suggest_lod html summary_maps_onemap html test_segregation html test_segregation_of_a_marker html try_seq html try_seq_by_seq html ug html vcf2raw html vcf_example_bc html vcf_example_f2 html vcf_example_out html vcf_example_riself html write_map html write_onemap_raw html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (onemap) + test -d onemap/src + cd onemap/src + rm -f find_bins.o hmm_bc.o hmm_f2.o hmm_out.o onemap_init.o out_est.o twopts_bc.o twopts_out.o utils.o onemap.so + rm -f /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT/usr/local/lib/R/library/R.css + find /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.2.2-1.fc41.copr9067937 --unique-debug-suffix -3.2.2-1.fc41.copr9067937.x86_64 --unique-debug-src-base R-CRAN-onemap-3.2.2-1.fc41.copr9067937.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/onemap find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-onemap-3.2.2-1.fc41.copr9067937.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT Scanned 29 directories and 304 files, processed 218 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/SPECPARTS/rpm-debuginfo.specpart Processing files: R-CRAN-onemap-3.2.2-1.fc41.copr9067937.x86_64 Provides: R-CRAN-onemap = 3.2.2-1.fc41.copr9067937 R-CRAN-onemap(x86-64) = 3.2.2-1.fc41.copr9067937 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-onemap-debugsource-3.2.2-1.fc41.copr9067937.x86_64 Provides: R-CRAN-onemap-debugsource = 3.2.2-1.fc41.copr9067937 R-CRAN-onemap-debugsource(x86-64) = 3.2.2-1.fc41.copr9067937 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-onemap-debuginfo-3.2.2-1.fc41.copr9067937.x86_64 Provides: R-CRAN-onemap-debuginfo = 3.2.2-1.fc41.copr9067937 R-CRAN-onemap-debuginfo(x86-64) = 3.2.2-1.fc41.copr9067937 debuginfo(build-id) = 2db91a09f54c02f7351783733cf37853509e354f Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-onemap-debugsource(x86-64) = 3.2.2-1.fc41.copr9067937 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build/BUILDROOT Wrote: /builddir/build/RPMS/R-CRAN-onemap-debuginfo-3.2.2-1.fc41.copr9067937.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-onemap-debugsource-3.2.2-1.fc41.copr9067937.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-onemap-3.2.2-1.fc41.copr9067937.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.pkt2v9 + umask 022 + cd /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build + test -d /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build + rm -rf /builddir/build/BUILD/R-CRAN-onemap-3.2.2-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm Finish: build phase for R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1747795026.939987/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-onemap-3.2.2-1.fc41.copr9067937.src.rpm) Config(child) 1 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-onemap-debugsource", "epoch": null, "version": "3.2.2", "release": "1.fc41.copr9067937", "arch": "x86_64" }, { "name": "R-CRAN-onemap", "epoch": null, "version": "3.2.2", "release": "1.fc41.copr9067937", "arch": "src" }, { "name": "R-CRAN-onemap", "epoch": null, "version": "3.2.2", "release": "1.fc41.copr9067937", "arch": "x86_64" }, { "name": "R-CRAN-onemap-debuginfo", "epoch": null, "version": "3.2.2", "release": "1.fc41.copr9067937", "arch": "x86_64" } ] } RPMResults finished