OhdsiReportGenerator-package | OhdsiReportGenerator |
addTarColumn | addTarColumn |
formatBinaryCovariateName | formatBinaryCovariateName |
generateFullReport | generateFullReport |
generatePresentation | generatePresentation |
generatePresentationMultiple | generatePresentationMultiple |
getBinaryCaseSeries | A function to extract case series characterization results |
getBinaryRiskFactors | A function to extract non-case and case binary characterization results |
getCaseBinaryFeatures | Extract aggregate statistics of binary feature analysis IDs of interest for cases |
getCaseContinuousFeatures | Extract aggregate statistics of continuous feature analysis IDs of interest for targets |
getCaseCounts | Extract the outcome cohort counts result |
getCharacterizationDemographics | Extract the binary age groups for the cases and targets |
getCmDiagnosticsData | Extract the cohort method diagostic results |
getCMEstimation | Extract the cohort method results |
getCmMetaEstimation | Extract the cohort method meta analysis results |
getCohortDefinitions | Extract the cohort definition details |
getCohortSubsetDefinitions | Extract the cohort subset definition details |
getContinuousCaseSeries | A function to extract case series continuous feature characterization results |
getContinuousRiskFactors | A function to extract non-case and case continuous characterization results |
getDechallengeRechallenge | Extract the dechallenge rechallenge results |
getExampleConnectionDetails | create a connection detail for an example OHDSI results database |
getIncidenceRates | Extract the cohort incidence result |
getPredictionCohorts | Extract a complete set of cohorts used in the prediction results |
getPredictionDiagnostics | Extract the model design diagnostics for a specific development database |
getPredictionDiagnosticTable | Extract specific diagnostic table |
getPredictionHyperParamSearch | Extract hyper parameters details |
getPredictionIntercept | Extract model interception (for logistic regression) |
getPredictionModelDesigns | Extract the model designs and aggregate performances for the prediction results |
getPredictionPerformances | Extract the model performances |
getPredictionPerformanceTable | Extract specific results table |
getPredictionTopPredictors | Extract the top N predictors per model |
getSccsDiagnosticsData | Extract the self controlled case series (sccs) diagostic results |
getSccsEstimation | Extract the self controlled case series (sccs) results |
getSccsMetaEstimation | Extract the self controlled case series (sccs) meta analysis results |
getTargetBinaryFeatures | Extract aggregate statistics of binary feature analysis IDs of interest for targets |
getTargetContinuousFeatures | Extract aggregate statistics of continuous feature analysis IDs of interest for targets |
getTargetCounts | Extract the target cohort counts result |
getTimeToEvent | Extract the time to event result |
kableDark | output a nicely formatted html table |
OhdsiReportGenerator | OhdsiReportGenerator |
plotAgeDistributions | Plots the age distributions using the binary age groups |
plotCmEstimates | Plots the cohort method results for one analysis |
plotSccsEstimates | Plots the self controlled case series results for one analysis |
plotSexDistributions | Plots the sex distributions using the sex features |
printReactable | prints a reactable in a quarto document |
processCohorts | Extract the cohort parents and children cohorts (cohorts derieved from the parent cohort) |
removeSpaces | removeSpaces |