create_monocle_from_clustassess_app {ClustAssess} | R Documentation |
Create monocle object from a ClustAssess shiny app
Description
Use the files generated in the ClustAssess app to create a Monocle object which has the stable number of clusters.
Usage
create_monocle_from_clustassess_app(
app_folder,
stable_feature_type,
stable_feature_set_size,
stable_clustering_method,
stable_n_clusters = NULL,
use_all_genes = FALSE
)
Arguments
app_folder |
Path pointing to the folder containing a ClustAssess app. |
stable_feature_type |
The feature type which leads to stable clusters. |
stable_feature_set_size |
The feature size which leads to stable clusters. |
stable_clustering_method |
The clustering method which leads to stable clusters. |
stable_n_clusters |
The number of clusters that are stable. If NULL,
all the clusters will be provided. Defaults to |
use_all_genes |
A boolean value indicating if the expression matrix
should be truncated to the genes used in the stability assessment. Defaults
to |
Value
A Monocle object of the expression matrix, having the stable number of clusters identified by ClustAssess.
[Package ClustAssess version 1.1.0 Index]