plot_simData {SUMO} | R Documentation |
Visualizing the simulated data using heatmap or 3D surface plot
Description
Generates a visual representation of the simulated omics data either as a heatmap or a 3D surface plot. You can select which dataset to visualize: the merged/concatenated matrix, or any individual omic (e.g., "omic1", "omic2", etc.).
Usage
plot_simData(sim_object, data = "merged", type = "heatmap")
Arguments
sim_object |
R object containing simulated data as returned by |
data |
Character. Specifies which data matrix to visualize. Options are "merged" (or "concatenated"), "omic.one", or "omic.two". |
type |
Character. Type of plot: either "heatmap" for a 2D image plot or "3D" for a 3D perspective surface plot. |
Examples
output_obj <- simulateMultiOmics(
vector_features = c(3000, 2500, 2000),
n_samples = 100,
n_factors = 3,
snr = 3,
signal.samples = c(5, 1),
signal.features = list(
c(3, 0.3),
c(2.5, 0.25),
c(2, 0.2)
),
factor_structure = "mixed",
num.factor = "multiple",
seed = 123
)
# Visualize merged heatmap
plot_simData(sim_object = output_obj, data = "merged", type = "heatmap")
# Visualize omic2 in 3D
plot_simData(sim_object = output_obj, data = "omic2", type = "heatmap")
[Package SUMO version 1.2.0 Index]