DAISIE_plot_pc_rates {DAISIE} | R Documentation |
Plot per capita STT and per-capita rate change thourgh simulation
Description
Plot per capita STT and per-capita rate change thourgh simulation
Usage
DAISIE_plot_pc_rates(
total_time,
pars,
island_ontogeny,
sea_level = "const",
area_pars,
peak,
hyper_pars,
mainland_n = 1000,
resolution = 0.001,
simulation_outputs = NULL
)
Arguments
total_time |
Numeric defining the length of the simulation in time units. |
pars |
A numeric vector containing the model parameters:
Elements 6:10 are required only when type 2 species are included
or in the rate shift model. For |
island_ontogeny |
In |
sea_level |
In |
area_pars |
A named list containing area and sea level parameters as
created by
|
peak |
A numeric value specifying the peakiness (or shaprness) of the
ontogeny curve. Higher values imply peakier ontogeny. This value is
internally calculated by |
hyper_pars |
A named list of numeric hyperparameters for the rate
calculations as returned by
|
mainland_n |
A numeric stating the number of mainland species, that is the number of species that can potentially colonize the island. If using a clade-specific diversity dependence, this value is set to 1. If using an island-wide diversity dependence, this value is set to the number of mainland species. |
resolution |
numeric indicating resolution of plot. Should be < 0. |
simulation_outputs |
A list with matrices and vectors of simulation produced by DAISIE_sim functions. |
Value
A composite plot containing the STT plot, and variation in area, extinction rate, cladogenesis rate and immigration rate
Author(s)
Pedro Neves