example_isolates {AMR} | R Documentation |
Data Set with 2 000 Example Isolates
Description
A data set containing 2 000 microbial isolates with their full antibiograms. This data set contains randomised fictitious data, but reflects reality and can be used to practise AMR data analysis. For examples, please read the tutorial on our website.
Usage
example_isolates
Format
A tibble with 2 000 observations and 46 variables:
-
date
Date of receipt at the laboratory -
patient
ID of the patient -
age
Age of the patient -
gender
Gender of the patient, either "F" or "M" -
ward
Ward type where the patient was admitted, either "Clinical", "ICU", or "Outpatient" -
mo
ID of microorganism created withas.mo()
, see also the microorganisms data set -
PEN:RIF
40 different antimicrobials with classsir
(seeas.sir()
); these column names occur in the antimicrobials data set and can be translated withset_ab_names()
orab_name()
Download Our Reference Data
All reference data sets in the AMR package - including information on microorganisms, antimicrobials, and clinical breakpoints - are freely available for download in multiple formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata.
For maximum compatibility, we also provide machine-readable, tab-separated plain text files suitable for use in any software, including laboratory information systems.
Visit our website for direct download links, or explore the actual files in our GitHub repository.
Examples
example_isolates