intrinsic_resistant {AMR} | R Documentation |
Data Set Denoting Bacterial Intrinsic Resistance
Description
Data set containing 'EUCAST Expected Resistant Phenotypes' of all bug-drug combinations between the microorganisms and antimicrobials data sets.
Usage
intrinsic_resistant
Format
A tibble with 271 905 observations and 2 variables:
-
mo
Microorganism ID which occurs inmicroorganisms$mo
. Names can be retrieved usingmo_name()
. -
ab
Antimicrobial ID which occurs inantimicrobials$ab
. Names can be retrieved usingab_name()
.
Details
This data set is currently based on 'EUCAST Expected Resistant Phenotypes' v1.2 (2023).
This data set is internally used by:
Download Our Reference Data
All reference data sets in the AMR package - including information on microorganisms, antimicrobials, and clinical breakpoints - are freely available for download in multiple formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata.
For maximum compatibility, we also provide machine-readable, tab-separated plain text files suitable for use in any software, including laboratory information systems.
Visit our website for direct download links, or explore the actual files in our GitHub repository.
Examples
intrinsic_resistant