example_isolates_unclean {AMR} | R Documentation |
Data Set with Unclean Data
Description
A data set containing 3 000 microbial isolates that are not cleaned up and consequently not ready for AMR data analysis. This data set can be used for practice.
Usage
example_isolates_unclean
Format
A tibble with 3 000 observations and 8 variables:
-
patient_id
ID of the patient -
date
date of receipt at the laboratory -
hospital
ID of the hospital, from A to C -
bacteria
info about microorganism that can be transformed withas.mo()
, see also microorganisms -
AMX:GEN
4 different antimicrobials that have to be transformed withas.sir()
Download Our Reference Data
All reference data sets in the AMR package - including information on microorganisms, antimicrobials, and clinical breakpoints - are freely available for download in multiple formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata.
For maximum compatibility, we also provide machine-readable, tab-separated plain text files suitable for use in any software, including laboratory information systems.
Visit our website for direct download links, or explore the actual files in our GitHub repository.
Examples
example_isolates_unclean