export_ncbi_biosample {AMR} | R Documentation |
Export Data Set as NCBI BioSample Antibiogram
Description
Export Data Set as NCBI BioSample Antibiogram
Usage
export_ncbi_biosample(x, filename = paste0("biosample_", format(Sys.time(),
"%Y-%m-%d-%H%M%S"), ".xlsx"), type = "pathogen MIC",
columns = where(is.mic), save_as_xlsx = TRUE)
Arguments
x |
A data set. |
filename |
A character string specifying the file name. |
type |
A character string specifying the type of data set, either "pathogen MIC" or "beta-lactamase MIC", see https://www.ncbi.nlm.nih.gov/biosample/docs/. |
[Package AMR version 3.0.0 Index]