get_multiOmics_diffNetworks {multiDEGGs} | R Documentation |
Get a table of all significant interactions across categories
Description
Get a table of all significant interactions across categories
Usage
get_multiOmics_diffNetworks(deggs_object, sig_threshold = 0.05)
Arguments
deggs_object |
an object of class |
sig_threshold |
threshold for significance. Default 0.05. |
Value
a list of multilayer networks (as edge tables), one per category.
Examples
data("synthetic_metadata")
data("synthetic_rnaseqData")
data("synthetic_proteomicData")
data("synthetic_OlinkData")
assayData_list <- list("RNAseq" = synthetic_rnaseqData,
"Proteomics" = synthetic_proteomicData,
"Olink" = synthetic_OlinkData)
deggs_object <- get_diffNetworks(assayData = assayData_list,
metadata = synthetic_metadata,
category_variable = "response",
verbose = FALSE,
show_progressBar = FALSE,
cores = 2)
get_multiOmics_diffNetworks(deggs_object, sig_threshold = 0.05)
[Package multiDEGGs version 1.0.0 Index]