View_diffNetworks {multiDEGGs} | R Documentation |
Interactive visualisation of differential networks
Description
Explore differential networks and interactively select regression and box plots
Usage
View_diffNetworks(deggs_object, legend.arrow.width = 0.35, stepY_legend = 55)
Arguments
deggs_object |
an object of class |
legend.arrow.width |
width of the arrow used in the network legend. Default is 0.35. As the number of assayData matrices increases this parameter must be accordingly increased to avoid graphical errors in the legend. |
stepY_legend |
vertical space between legend arrows. It is used together
with |
Value
a shiny interface showing networks with selectable nodes and links
Examples
data("synthetic_metadata")
data("synthetic_rnaseqData")
data("synthetic_proteomicData")
data("synthetic_OlinkData")
assayData_list <- list("RNAseq" = synthetic_rnaseqData,
"Proteomics" = synthetic_proteomicData,
"Olink" = synthetic_OlinkData)
deggs_object <- get_diffNetworks(assayData = assayData_list,
metadata = synthetic_metadata,
category_variable = "response",
regression_method = "lm",
verbose = FALSE,
show_progressBar = FALSE,
cores = 1)
# the below function runs a shiny app, so can't be run during R CMD check
if(interactive()){
View_diffNetworks(deggs_object)
}
[Package multiDEGGs version 1.0.0 Index]