mpl_first_down_recon {TreeSearch} | R Documentation |
Reconstructs the first (downpass) nodal reconstructions
Description
Reconstructs the preliminary nodal set for all characters for a particular node. This function is called over a postorder sequence of internal nodes where left and right descendants are known. Because this function needs to be fairly high-performance, it does not do much checking for parameter validity, thus unsafe usage of this function might not be caught. It is up to calling functions to ensure that the appropriate parameters have been set before use.
Usage
mpl_first_down_recon(node_id, left_id, right_id, morphyobj)
Arguments
node_id |
The index of the node being reconstructed. |
left_id |
The index of the left descendant. |
right_id |
The index of the right descendant. |
morphyobj |
An instance of the Morphy object. |
Value
The integral parsimony length (right now)
Author(s)
Martin Brazeau
See Also
Other Morphy API functions:
GapHandler()
,
MorphyErrorCheck()
,
MorphyWeights()
,
PhyDat2Morphy()
,
SingleCharMorphy()
,
UnloadMorphy()
,
is.morphyPtr()
,
mpl_apply_tipdata()
,
mpl_attach_rawdata()
,
mpl_attach_symbols()
,
mpl_delete_Morphy()
,
mpl_delete_rawdata()
,
mpl_first_up_recon()
,
mpl_get_charac_weight()
,
mpl_get_gaphandl()
,
mpl_get_num_charac()
,
mpl_get_num_internal_nodes()
,
mpl_get_numtaxa()
,
mpl_get_symbols()
,
mpl_init_Morphy()
,
mpl_new_Morphy()
,
mpl_second_down_recon()
,
mpl_second_up_recon()
,
mpl_set_charac_weight()
,
mpl_set_num_internal_nodes()
,
mpl_set_parsim_t()
,
mpl_translate_error()
,
mpl_update_lower_root()
,
mpl_update_tip()
,
summary.morphyPtr()