Bayesian Exposure-Response Analysis Tools


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Documentation for package ‘BayesERtools’ version 0.2.3

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as_draws Transform to 'draws' objects
as_draws.ermod Transform to 'draws' objects
as_draws_array Transform to 'draws' objects
as_draws_array.ermod Transform to 'draws' objects
as_draws_df Transform to 'draws' objects
as_draws_df.ermod Transform to 'draws' objects
as_draws_list Transform to 'draws' objects
as_draws_list.ermod Transform to 'draws' objects
as_draws_matrix Transform to 'draws' objects
as_draws_matrix.ermod Transform to 'draws' objects
as_draws_rvars Transform to 'draws' objects
as_draws_rvars.ermod Transform to 'draws' objects
build_spec_coveff Build specifications for covariate effect simulation/visualization
build_spec_coveff_one_variable Customize specifications for covariate effect simulations/visualizations
calc_ersim_med_qi Calculate median and quantile intervals from ersim object
coef.ermod S3 methods for the classes 'ermod_*'
dev_ermod_bin Develop linear ER model for binary or continuous endpoint
dev_ermod_bin_cov_sel Perform covariate selection for linear ER model
dev_ermod_bin_emax Develop Emax model for continuous and binary endpoint
dev_ermod_bin_emax_exp_sel Exposure metrics selection for Emax models
dev_ermod_bin_exp_sel Exposure metrics selection for linear ER models
dev_ermod_emax Develop Emax model for continuous and binary endpoint
dev_ermod_emax_exp_sel Exposure metrics selection for Emax models
dev_ermod_lin Develop linear ER model for binary or continuous endpoint
dev_ermod_lin_cov_sel Perform covariate selection for linear ER model
dev_ermod_lin_exp_sel Exposure metrics selection for linear ER models
d_sim_binom_cov Sample simulated data for exposure-response with binary endpoint.
d_sim_binom_cov_hgly2 Sample simulated data for exposure-response with binary endpoint.
d_sim_emax Sample simulated data for Emax exposure-response models with covariates.
d_sim_lin Sample simulated data for exposure-response with continuous endpoint using linear model.
edit_spec_coveff Customize specifications for covariate effect simulations/visualizations
ermod_cov_sel_method S3 methods for the classes 'ermod_bin_cov_sel'
ermod_exp_sel_method S3 methods for the classes 'ermod_exp_sel'
ermod_method S3 methods for the classes 'ermod_*'
ersim_method S3 methods for the classes ersim_* and ersim_med_qi_*
eval_ermod Evaluate exposure-response model prediction performance
extract_coef_exp_ci Extract credible interval of the exposure coefficient
extract_data Extract elements from S3 objects
extract_exp_sel_comp Extract elements from S3 objects
extract_exp_sel_list_model Extract elements from S3 objects
extract_kfold_loo Run k-fold cross-validation
extract_method Extract elements from S3 objects
extract_mod Extract elements from S3 objects
extract_var_cov Extract elements from S3 objects
extract_var_exposure Extract elements from S3 objects
extract_var_resp Extract elements from S3 objects
extract_var_selected Extract elements from S3 objects
kfold Run k-fold cross-validation
kfold.ermod Run k-fold cross-validation
loo Efficient approximate leave-one-out cross-validation (LOO)
loo.ermod Efficient approximate leave-one-out cross-validation (LOO)
loo.ermod_bin_emax Efficient approximate leave-one-out cross-validation (LOO)
loo.ermod_emax Efficient approximate leave-one-out cross-validation (LOO)
plot.ermod_bin S3 methods for the classes 'ermod_*'
plot.ermod_cov_sel S3 methods for the classes 'ermod_bin_cov_sel'
plot.ermod_exp_sel S3 methods for the classes 'ermod_exp_sel'
plot.ersim S3 methods for the classes ersim_* and ersim_med_qi_*
plot.ersim_med_qi S3 methods for the classes ersim_* and ersim_med_qi_*
plot_coveff Visualize the covariate effects for ER model
plot_coveff.coveffsim Visualize the covariate effects for ER model
plot_coveff.ermod Visualize the covariate effects for ER model
plot_cov_sel Plot variable selection performance
plot_er Plot ER model simulations
plot_er.ermod Plot ER model simulations
plot_er.ersim Plot ER model simulations
plot_er.ersim_med_qi Plot ER model simulations
plot_er_exp_sel Plot exposure metric selection comparison
plot_er_gof Default GOF plot for ER model
plot_submod_performance Plot variable selection performance
plot_var_ranking Plot variable selection performance
print.ermod S3 methods for the classes 'ermod_*'
print.ermod_cov_sel S3 methods for the classes 'ermod_bin_cov_sel'
print.ermod_exp_sel S3 methods for the classes 'ermod_exp_sel'
print_coveff Format the covariate effect simulation results for printing
prior_summary Summarize the priors used for linear or linear logistic regression models
prior_summary.ermod Summarize the priors used for linear or linear logistic regression models
p_direction Probability of Direction (pd)
p_direction.ermod_bin Probability of Direction (pd)
replace_spec_coveff Customize specifications for covariate effect simulations/visualizations
sim_coveff Perform simulation of covariate effects for ER model
sim_er Simulate from ER model
sim_er_curve Simulate from ER model at specified exposure values
sim_er_curve_marg Calculate marginal expected response for specified exposure values
sim_er_new_exp Simulate from ER model at specified exposure values
sim_er_new_exp_marg Calculate marginal expected response for specified exposure values
summary.ermod S3 methods for the classes 'ermod_*'