order.index.gene.data {GRIN2} | R Documentation |
Order and Index Gene Annotation Data
Description
This function orders and indexes gene annotation data by chromosome, gene start, and gene end positions. It is typically used to prepare gene data for overlap analyses with lesion data.
Usage
order.index.gene.data(gene.data)
Arguments
gene.data |
A
|
Value
A list with two components:
gene.data |
The input gene annotation data, ordered by chromosome and genomic coordinates. |
gene.index |
A |
Author(s)
Abdelrahman Elsayed abdelrahman.elsayed@stjude.org and Stanley Pounds stanley.pounds@stjude.org
References
Pounds, S., et al. (2013). A genomic random interval model for statistical analysis of genomic lesion data.
Cao, X., Elsayed, A. H., & Pounds, S. B. (2023). Statistical Methods Inspired by Challenges in Pediatric Cancer Multi-omics.
Examples
data(hg38_gene_annotation)
ordered.genes <- order.index.gene.data(hg38_gene_annotation)