%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  GRIN2
%global packver   2.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Genomic Random Interval (GRIN)

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.2.0
Requires:         R-core >= 4.2.0
BuildArch:        noarch
BuildRequires:    R-CRAN-circlize 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-forcats 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyselect 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-writexl 
Requires:         R-CRAN-circlize 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-forcats 
Requires:         R-CRAN-ggplot2 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-grid 
Requires:         R-CRAN-magrittr 
Requires:         R-stats 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyselect 
Requires:         R-utils 
Requires:         R-CRAN-writexl 

%description
Improved version of 'GRIN' software that streamlines its use in practice
to analyze genomic lesion data, accelerate its computing, and expand its
analysis capabilities to answer additional scientific questions including
a rigorous evaluation of the association of genomic lesions with RNA
expression. Pounds, Stan, et al. (2013)
<DOI:10.1093/bioinformatics/btt372>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}