Digital PCR Analysis


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Documentation for package ‘dpcR’ version 0.6

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dpcR-package Digital PCR Analysis
adpcr Class '"adpcr"' - end-point array digital PCR experiments
adpcr-class Class '"adpcr"' - end-point array digital PCR experiments
adpcr2panel Convert adpcr object to array
adpcr2ppp Convert adpcr to ppp
binarize Binarize digital PCR data
bind_dpcr Bind dpcr objects
bind_dpcr,adpcr Bind dpcr objects
bind_dpcr,dpcr Bind dpcr objects
bind_dpcr,list Bind dpcr objects
bind_dpcr-method Bind dpcr objects
bind_dpcr-methods Bind dpcr objects
bioamp Analyze and plot a Bio-Rad droplet digital PCR experiment
BioradCNV Copy number variation experiment
calc_coordinates Calculate Array Coordinates
coef-method Class '"count_test"'
compare_dens Plot and Compare Densities
count_test Class '"count_test"'
count_test-class Class '"count_test"'
create_dpcr Create dpcR object
ddpcRquant Quantify droplets
df2dpcr Convert data.frame to dpcr object
dpcR Digital PCR Analysis
dpcr Class '"dpcr"' - general digital PCR
dpcr-class Class '"dpcr"' - general digital PCR
dpcr2df Convert dpcr object to data frame
dpcr2df-method Convert dpcr object to data frame
dpcr2df-methods Convert dpcr object to data frame
dpcReport Digital PCR Report Graphical User Interface
dPCRmethyl Methylated human gDNA
dpcr_density Calculate Density of Single dPCR Run
dpcr_density_gui Digital PCR Density Graphical User Interface
dpcr_density_table Calculate Density of Multiple dPCR runs
extract_dpcr Extract Assays or Experiments
extract_run Extract Digital PCR Run
limit_cq Limit Cy0 values
many_peaks Artificial data set with many peaks
moments Calculate Moments of Poisson Distribution
moments-method Calculate Moments of Poisson Distribution
moments-methods Calculate Moments of Poisson Distribution
num2int Convert numeric to integer
pds Plasmid dilution series results
pds_raw Plasmid dilution series raw data
plot-method Class '"count_test"'
plot-method Plot 'qdpcr' objects
plot.count_test Class '"count_test"'
plot.qdpcr Plot 'qdpcr' objects
plot_panel Plot Panel
plot_vic_fam Amplitude Plot VIC and FAM Channels of a Droplet Digital PCR Experiment
qdpcr Class '"qdpcr"'
qdpcr-class Class '"qdpcr"'
qpcr2pp qPCR to Poisson Process
qpcr_analyser qPCR Analyser
qpcr_analyser-method qPCR Analyser
qpcr_analyser-methods qPCR Analyser
read_amp Read digital PCR amplitude raw data
read_BioMark Read BioMark
read_dpcr Read digital PCR data
read_QX100 Read QX100
read_QX200 Read QX200
read_redf Read digital PCR raw data
rename_dpcr Rename object
rtadpcr Class '"rtadpcr"' - real-time array digital PCR experiments
rtadpcr-class Class '"rtadpcr"' - real-time array digital PCR experiments
show Methods for Function 'show'
show-method Class '"count_test"'
show-method Class '"qdpcr"'
show-method Methods for Function 'show'
show-methods Methods for Function 'show'
show.qdpcr Class '"qdpcr"'
sim_adpcr Simulate Array Digital PCR
sim_dpcr Simulate Droplet Digital PCR
six_panels Simulated Digital PCR data
summary Methods for Function 'summary'
summary-method Class '"count_test"'
summary-method Class '"qdpcr"'
summary-method Methods for Function 'summary'
summary-methods Methods for Function 'summary'
summary.adpcr Methods for Function 'summary'
summary.dpcr Methods for Function 'summary'
summary.qdpcr Class '"qdpcr"'
test_counts Test counts
test_counts_gui Compare digital PCR runs - interactive presentation
test_panel Dispersion Test for Spatial Point Pattern in Array dPCR Based on Quadrat Counts
test_peaks Peak Test
test_peaks-method Peak Test
test_peaks-methods Peak Test
test_pooled Compare pooled digital PCR
White Digitalized Data from a Fluidigm Array