rscu_data {ggmRSCU}R Documentation

Relative Synonymous Codon Usage (RSCU) Data

Description

A longitudinal dataset documenting codon usage bias patterns across multiple species. Contains normalized RSCU values calculated from protein- coding sequences.

Usage

data(rscu_data)

Format

A tibble with 186 rows and 5 columns:

AA

character Standard three-letter amino acid code with isotype variants indicating synonymous codon groups: e.g., "Phe", "Leu1", "Leu2"

Codon

character RNA codon triplet in uppercase: e.g., "UUU", "CUA"

Fill

integer Group index classifying synonymous codons for each amino acid (e.g., 1, 2, etc.)

Species

character Organism identifier in [Accession].[Version] format: e.g., "MK693137.1"

RSCU

numeric Relative Synonymous Codon Usage value

Source

Data derived from previously published studies based on protein- coding sequences analyzed in our laboratory. Accession numbers correspond to NCBI GenBank.


[Package ggmRSCU version 0.1.0 Index]