GLstring_genes {immunogenetr} | R Documentation |
GLstring_genes
Description
This function processes a specified column in a data frame that contains GL strings. It separates the GL strings, identifies the HLA loci, and transforms the data into a wider format with loci as column names.
Usage
GLstring_genes(data, gl_string)
Arguments
data |
A data frame |
gl_string |
The name of the column in the data frame that contains GL strings |
Value
A data frame with GL strings separated, loci identified, and data transformed to a wider format with loci as columns.
Examples
file <- HLA_typing_1[, -1]
GL_string <- data.frame("GL_string" = HLA_columns_to_GLstring(
file,
HLA_typing_columns = everything()
))
GL_string <- GL_string[1, , drop = FALSE] # When considering first patient
result <- GLstring_genes(GL_string, "GL_string")
print(result)
[Package immunogenetr version 0.3.1 Index]