GLstring_genes_expanded {immunogenetr} | R Documentation |
GLstring_genes_expanded
Description
This function processes a specified column in a data frame that contains GL strings. It separates the GL strings, identifies the HLA loci, and transforms the data into a wider format with loci as column names. It also creates multiple rows to separate each locus in the allele.
Usage
GLstring_genes_expanded(data, gl_string)
Arguments
data |
A data frame containing GL strings for HLA data. |
gl_string |
The name of the column in the data frame that contains GL strings. |
Value
A data frame with expanded columns, where each row has a single allele for a specific locus.
Examples
file <- HLA_typing_1[, -1]
GL_string <- data.frame("GL_string" = HLA_columns_to_GLstring(
file,
HLA_typing_columns = everything()
))
GL_string <- GL_string[1, , drop = FALSE] # When considering first patient
result <- GLstring_genes_expanded(GL_string, "GL_string")
print(result)
[Package immunogenetr version 0.3.1 Index]