documentation_clusters {rbiom}R Documentation

documentation_clusters

Description

documentation_clusters

Arguments

k

Number of clusters. Default: 5L

rank

Which taxa rank to use. E.g. "Phylum", "Genus", ".otu", etc. An integer can also be given, where 1 is the highest rank, 2 is the second highest, -1 is the lowest rank, -2 is the second lowest, and 0 is the OTU "rank". Run biom$ranks to see all options for a given rbiom object. Default: .otu.

Value

A numeric factor assigning samples to clusters.


[Package rbiom version 2.2.1 Index]