jndrot {pavo} | R Documentation |
Rotate Cartesian coordinates obtained from jnd2xyz()
Description
Rotate Cartesian coordinates obtained from jnd2xyz()
Usage
jndrot(
jnd2xyzres,
center = c("mean", "achro"),
ref1 = "l",
ref2 = "u",
axis1 = c(1, 1, 0),
axis2 = c(0, 0, 1)
)
Arguments
jnd2xyzres |
(required) the output from a |
center |
should the vectors for rotation be centered in the achromatic center ("achro") or the data centroid ("mean", the default)? |
ref1 |
the cone to be used as a the first reference. May be |
ref2 |
the cone to be used as a the second reference. May be |
axis1 |
A vector of length 3 composed of 0's and 1's, with
1's representing the axes (x, y, z) to rotate around. Defaults to c(1, 1, 0), such
that the rotation aligns with the xy plane (only used if data has 2 or 3 dimensions).
Ignored if |
axis2 |
A vector of length 3 composed of 0's and 1's, with
1's representing the axes (x, y, z) to rotate around. Defaults to c(0, 0, 1), such
that the rotation aligns with the z axis (only used if data has 3 dimensions).
Ignored if |
Author(s)
Rafael Maia rm72@zips.uakron.edu
Examples
# Load floral reflectance spectra
data(flowers)
# Estimate quantum catches visual phenotype of a Blue Tit
vis.flowers <- vismodel(flowers, visual = 'bluetit')
# Estimate noise-weighted colour distances between all flowers
cd.flowers <- coldist(vis.flowers)
# Convert points to Cartesian coordinates in which Euclidean distances are
# noise-weighted, before rotating them about the data centroid
jndrot(jnd2xyz(cd.flowers))