read_STRmix_kit_settings {simDNAmixtures} | R Documentation |
Read STRmix Kit Settings
Description
Read STRmix kit settings from an XML file and associated stutter directory.
Usage
read_STRmix_kit_settings(filename, stutters_dir, include_y_loci = FALSE)
Arguments
filename |
Character vector specifying the path to the XML file containing the profiling kit settings. |
stutters_dir |
Character vector specifying the directory path where stutter settings files are located. |
include_y_loci |
Should Y loci be included in the list of locus names? Default is |
Value
A list containing the following components:
locus_names. Character vector.
degradation_parameter_cap. Numeric.
c2_prior. Numeric of length two with shape and scale.
LSAE_variance_prior. Numeric of length one.
detection_threshold. Numeric vector (named) with Detection Thresholds. Defaults to 50 for each locus.
size_regression. Function, see read_size_regression.
stutter_model. A list representing the stutter model.
stutter_variability. A list representing the stutter variability.