abouheif |
Compute the Abouheif distance matrix |
chisq_test |
Perform Chi-Square Test on Sets of Transmission Trees |
euclidean |
Calculate the Euclidean distance between two distance matrices. |
kendall |
Compute the Kendall distance matrix |
make_tree |
Generate a Transmission Tree |
patristic |
Compute the Patristic distance matrix |
permanova_test |
Perform PERMANOVA on Sets of Transmission Trees |
shuffle_graph_ids |
Shuffle Node IDs in a Graph |
tree_test |
Test Differences Between Sets of Transmission Trees |
validate_tree |
Validate a Transmission Tree |