get_sig_deggs {multiDEGGs} | R Documentation |
Get a table of all the significant interactions across categories
Description
Get a table of all the significant interactions across categories
Usage
get_sig_deggs(deggs_object, assayDataName = 1, sig_threshold = 0.05)
Arguments
deggs_object |
an object of class |
assayDataName |
name of the assayData of interest. If an unnamed list of
data was given to |
sig_threshold |
threshold for significance. Default 0.05. |
Value
a data.frame
listing all the significant differential interactions
found across categories for that particular omic data.
This list can also be used to substitute or integrate feature selection in
machine learning models for the prediction of the categories (see vignette).
Examples
data("synthetic_metadata")
data("synthetic_rnaseqData")
deggs_object <- get_diffNetworks(assayData = synthetic_rnaseqData,
metadata = synthetic_metadata,
category_variable = "response",
verbose = FALSE,
show_progressBar = FALSE,
cores = 2)
get_sig_deggs(deggs_object, sig_threshold = 0.05)