order.index.lsn.data {GRIN2} | R Documentation |
Order and Index Lesion Data
Description
This function orders and indexes lesion data by lesion type, chromosome, and subject ID. It prepares lesion data for downstream GRIN analysis by structuring it in a way that facilitates efficient access and overlap computations.
Usage
order.index.lsn.data(lsn.data)
Arguments
lsn.data |
A
|
Value
A list with two elements:
lsn.data |
The input lesion data, ordered by lesion type, chromosome, and subject. |
lsn.index |
A |
Author(s)
Abdelrahman Elsayed abdelrahman.elsayed@stjude.org and Stanley Pounds stanley.pounds@stjude.org
References
Pounds, S., et al. (2013). A genomic random interval model for statistical analysis of genomic lesion data.
Cao, X., Elsayed, A. H., & Pounds, S. B. (2023). Statistical Methods Inspired by Challenges in Pediatric Cancer Multi-omics.
Examples
data(lesion_data)
ordered.lsn <- order.index.lsn.data(lesion_data)