plot_filter_stats {poppr} | R Documentation |
Plot the results of filter_stats
Description
Plot the results of filter_stats
Usage
plot_filter_stats(
x,
fstats,
distmat,
cols = NULL,
nclone = NULL,
breaks = NULL
)
Arguments
x |
a genlight of genind object |
fstats |
the list passed from |
distmat |
a distance matrix passed from |
cols |
colors to use for each algorithm (defaults to RColorBrewer set 1) |
nclone |
see |
Value
a plot depicting how many MLLs are collapsed as the genetic distance increases for each algorithm.
Note
This function originally appeared in doi:10.5281/zenodo.17424
Author(s)
Zhian N. Kamvar
References
ZN Kamvar, JC Brooks, and NJ Grünwald. 2015. Supplementary Material for Frontiers Plant Genetics and Genomics 'Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality'. DOI: doi:10.5281/zenodo.17424
Kamvar ZN, Brooks JC and Grünwald NJ (2015) Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality. Front. Genet. 6:208. doi: doi:10.3389/fgene.2015.00208