Import Data from EDC Software


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Documentation for package ‘EDCimport’ version 0.6.0

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assert_no_duplicate Assert that a dataframe has one row per patient
assert_no_rows Standardized warning system
check_subjid Check the validity of the subject ID column
crf_status_plot Show the current CRF status distribution
edc_browse_excel Save the database as an Excel file
edc_clean_names Clean up the names of all datasets
edc_crf_plot Show the current CRF status distribution
edc_database EDCimport Database
edc_data_stop Standardized warning system
edc_data_warn Standardized warning system
edc_data_warnings Standardized warning system
edc_db_to_excel Save the database as an Excel file
edc_example Example database
edc_example_plot Example database
edc_find_column Search the whole database
edc_find_value Search the whole database
edc_full_join Join within the EDCimport framework
edc_inform_code Shows how many code you wrote
edc_left_join Join within the EDCimport framework
edc_lookup Retrieve the lookup table from options
edc_options Set global options for 'EDCimport'
edc_pal_crf Show the current CRF status distribution
edc_patient_gridplot Patient gridplot
edc_peek_options See which 'EDCimport' option is currently set
edc_population_plot Plot the populations
edc_reset_options Reset all 'EDCimport' options
edc_right_join Join within the EDCimport framework
edc_split_mixed Split mixed datasets
edc_swimmerplot Swimmer plot of all dates columns
edc_unify_subjid Harmonize the subject ID of the database
edc_viewer Shiny data explorer
edc_warn_extraction_date Warn if extraction is too old
edc_warn_patient_diffs Check the validity of the subject ID column
fct_yesno Format factor levels as Yes/No
find_keyword Search the whole database
get_common_cols Get columns that are common to multiple datasets
get_datasets Retrieve the datasets as a list of data.frames
get_lookup Retrieve the lookup table from options
harmonize_subjid Harmonize the subject ID of the database
lastnews_table Get a table with the latest date for each patient
load_database Load a list in an environment
load_list Load a list in an environment
manual_correction Manual correction
read_all_csv Read all '.csv' files in a directory
read_all_sas Read all '.sas7bdat' files in a directory
read_all_xpt Read all '.xpt' files in a directory
read_tm_all_xpt Read all '.xpt' files in a directory
read_trialmaster Read the '.zip' archive of a TrialMaster export
reset_manual_correction Manual correction
save_edc_data_warnings Save EDCimport warning to Excel
save_plotly Save a plotly to an HTML file
save_sessioninfo Save 'sessionInfo()' output
search_for_newer_data Search for newer data
select_distinct Select only distinct columns
set_project_name Set the project name
summary.common_cols Get columns that are common to multiple datasets
table_format Identify if a dataframe has a long or a wide format
unify Unify a vector