FASTmrEMMA {mrMLM.GUI} | R Documentation |
FAST multi-locus random-SNP-effect EMMA
FASTmrEMMA(gen,phe,outATCG,genRaw,kk,psmatrix,svpal,svmlod,Genformat,Likelihood,CLO)
gen |
genotype matrix. |
phe |
phenotype matrix. |
outATCG |
genotype for code 1. |
genRaw |
raw genotype. |
kk |
kinship matrix. |
psmatrix |
population structure matrix. |
svpal |
Critical P-value for selecting variable. |
svmlod |
Critical LOD score for significant QTN. |
Genformat |
Format for genotypic codes. |
Likelihood |
restricted maximum likelihood (REML) and maximum likelihood (ML). |
CLO |
number of CPU. |
Zhang Ya-Wen, Li Pei, and Zhang Yuan-Ming
Maintainer: Yuan-Ming Zhang<soyzhang@mail.hzau.edu.cn>
G1=data(fmegen) P1=data(mrphe) G2=data(fmegenraw) result=FASTmrEMMA(fmegen,mrphe,outATCG=NULL,fmegenraw,kk=NULL, psmatrix=NULL,0.005,3,1,Likelihood="REML",CLO=1)