pLARmEB {mrMLM.GUI} | R Documentation |
polygene-background-control-based least angle regression plus Empirical Bayes
pLARmEB(gen,phe,outATCG,genRaw,kk,psmatrix,CriLOD,lars1,Genformat,Bootstrap,CLO)
gen |
genotype matrix. |
phe |
phenotype matrix. |
outATCG |
genotype for code 1. |
genRaw |
raw genotype. |
kk |
kinship matrix. |
psmatrix |
population structure matrix. |
CriLOD |
Critical LOD score for significant QTN. |
lars1 |
No. of potentially associated variables selected by LARS. |
Genformat |
Format for genotypic codes. |
Bootstrap |
Bootstrap=FALSE indicates the analysis of only real dataset, Bootstrap=TRUE indicates the analysis of both real dataset and four resampling datasets. |
CLO |
number of CPU. |
Zhang Ya-Wen, Li Pei, and Zhang Yuan-Ming
Maintainer: Yuan-Ming Zhang<soyzhang@mail.hzau.edu.cn>
G1=data(mrgen) P1=data(mrphe) G2=data(mrgenraw) result=pLARmEB(mrgen,mrphe,outATCG=NULL,mrgenraw,kk=NULL,psmatrix=NULL, 3,20,1,Bootstrap=FALSE,CLO=1)