gg.cor {iCellR} | R Documentation |
Gene-gene correlation. This function helps to visulaize and calculate gene-gene correlations.
gg.cor( x = NULL, data.type = "imputed", gene1 = NULL, gene2 = NULL, conds = NULL, cell.size = 1, cell.transparency = 0.5, interactive = TRUE, out.name = "plot" )
x |
An object of class iCellR. |
data.type |
Choose from imputed and main, default = "imputed". |
gene1 |
First gene name. |
gene2 |
Second gene name. |
conds |
Filter only one condition (only one), default is all conditions. |
cell.size |
A numeric value for the size of the cells, default = 1. |
cell.transparency |
A numeric value between 0 to 1, default = 0.5. |
interactive |
If TRUE an html interactive file will be made, default = TRUE. |
out.name |
Output name for html file if interactive = TRUE, default = "plot". |
An object of class iCellR