cell.type.pred {iCellR} | R Documentation |
This function takes an object of class iCellR and genes and provides a heatmap.
cell.type.pred( immgen.data = "rna", gene = "NULL", top.cell.types = 50, plot.type = "heatmap", heat.colors = c("blue", "white", "red") )
immgen.data |
Choose from ,"GSE109125","GSE122108","GSE122597","GSE124829","GSE15907","GSE37448", rna", "uli.rna" or "mca", default = "rna" |
gene |
A set of gene names to used to predict cell type. |
top.cell.types |
Top cell types sorted by cumulative expression, default = 25. |
plot.type |
Choose from "heatmap" od "point.plot", default = "heatmap" |
heat.colors |
Colors for heatmap, default = c("blue" ,"white", "red"). |
An object of class iCellR