run.cca {iCellR} | R Documentation |
This function takes an object of class iCellR and runs CCA using Seurat.
run.cca( x = NULL, top.vari.genes = 1000, cc.number = 30, dims.align = 1:20, normalize.data = TRUE, scale.data = TRUE, normalization.method = "LogNormalize", scale.factor = 10000, display.progress = TRUE )
x |
An object of class iCellR. |
top.vari.genes |
Chose top genes to use for CCA, default = 1000. |
cc.number |
Choose a number, default = 30. |
dims.align |
Choose the CCA dimentions to align, default = 1:20. |
normalize.data |
TRUE or FALSE, default = TRUE. |
scale.data |
TRUE or FALSE, default = TRUE. |
normalization.method |
Choose a method, default = "LogNormalize". |
scale.factor |
Scaling factor, default = 10000. |
display.progress |
Show progress, default = TRUE. |
An object of class iCellR.