top.markers {iCellR} | R Documentation |
This function takes the marker genes info if chooses marker gene names for plots.
top.markers( x = NULL, topde = 10, min.base.mean = 0.2, filt.ambig = TRUE, cluster = 0 )
x |
An object of class iCellR. |
topde |
Number of top differentially expressed genes to be choosen from each cluster, default = 10. |
min.base.mean |
Minimum base mean of the genes to be chosen, default = 0.5. |
filt.ambig |
Filter markers that are seen for more than one cluster, default = TRUE. |
cluster |
Choose a cluster to find markers for. If 0, it would find markers for all clusters, , default = 0. |
A set of gene names
marker.genes <- findMarkers(demo.obj,fold.change = 2,padjval = 0.1,uniq = TRUE) top.markers(marker.genes, topde = 10, min.base.mean = 0.8)