%global packname  microeco
%global packver   0.2.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.1
Release:          1%{?dist}%{?buildtag}
Summary:          Microbial Community Ecology Data Analysis

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-R6 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-ape 
BuildRequires:    R-CRAN-vegan 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-boot 
BuildRequires:    R-CRAN-agricolae 
BuildRequires:    R-CRAN-VGAM 
BuildRequires:    R-CRAN-GUniFrac 
BuildRequires:    R-CRAN-picante 
BuildRequires:    R-CRAN-randomForest 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-RColorBrewer 
BuildRequires:    R-CRAN-pheatmap 
BuildRequires:    R-CRAN-ggpubr 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-ggrepel 
BuildRequires:    R-CRAN-ggdendro 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-RcppArmadillo 
BuildRequires:    R-CRAN-RcppEigen 
Requires:         R-CRAN-R6 
Requires:         R-stats 
Requires:         R-CRAN-ape 
Requires:         R-CRAN-vegan 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-scales 
Requires:         R-grid 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-boot 
Requires:         R-CRAN-agricolae 
Requires:         R-CRAN-VGAM 
Requires:         R-CRAN-GUniFrac 
Requires:         R-CRAN-picante 
Requires:         R-CRAN-randomForest 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-RColorBrewer 
Requires:         R-CRAN-pheatmap 
Requires:         R-CRAN-ggpubr 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-ggrepel 
Requires:         R-CRAN-ggdendro 
Requires:         R-CRAN-Rcpp 

%description
A series of statistical and plotting approaches in microbial community
ecology based on the R6 class. The classes are designed for data
preprocessing, taxa abundance plotting, alpha diversity statistics, beta
diversity statistics, differential abundance test and indicator taxon
analysis, environmental data analysis, null model analysis, network
analysis and functional analysis.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}