logistf-package | Firth's Bias-Reduced Logistic Regression |
{logistf}-package | Firth's Bias-Reduced Logistic Regression |
add1.logistf | Add or Drop All Possible Single Terms to/from a 'logistf' Model |
anifood | case-control data |
anova.logistf | Analysis of Penalized Deviance for 'logistf' Models |
backward | Backward Elimination/Forward Selection of Model Terms in logistf Models |
backward.flac | Backward Elimination/Forward Selection of Model Terms in logistf Models |
backward.flic | Backward Elimination/Forward Selection of Model Terms in logistf Models |
backward.logistf | Backward Elimination/Forward Selection of Model Terms in logistf Models |
cacheit | Function to cache long operations |
calc_strata_or | Calculate the pooled strata OR |
case_control | nncc: nearest-neighbors matching for case-control data |
CLIP.confint | Confidence Intervals after Multiple Imputation: Combination of Likelihood Profiles |
CLIP.confint.difflevel | Combine confidence interval for 'logistf' after multiple imputation |
CLIP.profile | Combine Profile Likelihoods from Imputed-Data Model Fits |
distance_density_plot | Distance density plots comparing closest to random choices |
excl_vars | Variables excluded from matching |
finalize_data | Final cleaning of the matched dataset(s) |
fix_df | Fix the strata so they all have at least one case and control |
flac | FLAC - Firth's logistic regression with added covariate |
flac.formula | FLAC - Firth's logistic regression with added covariate |
flac.logistf | FLAC - Firth's logistic regression with added covariate |
flic | FLIC - Firth's logistic regression with intercept correction |
flic.formula | FLIC - Firth's logistic regression with intercept correction |
flic.logistf | FLIC - Firth's logistic regression with intercept correction |
forward | Backward Elimination/Forward Selection of Model Terms in logistf Models |
forward.logistf | Backward Elimination/Forward Selection of Model Terms in logistf Models |
get_paf | Calculate population attributable fraction using odds ratio |
get_threshold | Identify the right threshold |
isspecnum | Is specnum |
logistf | Firth's Bias-Reduced Logistic Regression |
logistf.control | Control Parameters for 'logistf' |
logistf.fit | Fit a Firth logistic regression model |
logistf.pdf | Likehood-ratio test of two models |
logistftest | Penalized likelihood ratio test |
logistpl.control | Default logistpl control |
make_analysis_set | Make analysis set |
make_analysis_sets | Make analysis datasets |
make_knn_strata | Make case-control strata using k nearest neighbors (knn) |
matching | nncc: nearest-neighbors matching for case-control data |
nearest_neighbors | nncc: nearest-neighbors matching for case-control data |
nncc | nncc: nearest-neighbors matching for case-control data |
original_compare_plot | Compare the original strata's distances to the knn version |
plot.logistf.profile | 'plot' Method for 'logistf' Likelihood Profiles |
plot_results | Plot the OR results |
predict.flac | Predict Method for flac Fits |
predict.flic | Predict Method for flic Fits |
predict.logistf | Predict Method for logistf Fits |
profile.logistf | Compute Profile Penalized Likelihood |
PVR.confint | Pseudo Variance Modification of Rubin's Rule |
sex2 | Urinary Tract Infection in American College Students |
sexagg | Urinary Tract Infection in American College Students |
test_mh | Calculate odds ratios |
threshold_model_plot | Show the prediction of the logistic regression model |
unique_controls | Ensures controls are unique to avoid possible pseudoreplication issues |
write_strata_or_output | Format strata output into CSV |