GOtable3 {GoMiner} | R Documentation |
GOtable3
Description
tabulate number of geneList mappings to GO categories
Usage
GOtable3(hgncList, DB)
Arguments
hgncList |
character list of gene names |
DB |
selected ontology branch of return value of subsetGOGOA |
Value
returns a list whose components are c("DB","table","ngenes") where 'DB' is the GO DB subsetted to the desired ONTOLOGY, and 'table' is tabulation of number of occurrences of each GO category name within the desired ONTOLOGY, and ngenes is the total number of hgncList genes mapping to GOGOA
Examples
#load("data/GOGOA3small.RData")
DB<-GOGOA3small$ontologies[["biological_process"]]
# housekeeping genes downloaded from https://housekeeping.unicamp.br/?download
#load("data/Housekeeping_Genes.RData")
hgncList<-Housekeeping_Genes[,"Gene.name"]
x<-GOtable3(hgncList,DB)
[Package GoMiner version 1.0 Index]