FDR {GoMiner} | R Documentation |
FDR
Description
compute the false discovery rate (FDR) of the hypergeometric p values of genes mapping to gene ontology (GO) categories
Usage
FDR(sampleList, GOGOA3, nrand, ONT)
Arguments
sampleList |
character vector of user-supplied genes of interest |
GOGOA3 |
return value of subsetGOGOA() |
nrand |
integer number of randomizations |
ONT |
c("molecular_function","cellular_component","biological_process") |
Value
returns a list with FDR information
Examples
#load("data/GOGOA3small.RData")
sampleList<-randSubsetGeneList(GOGOA3small$genes[["biological_process"]],10)
fdr<-FDR(sampleList,GOGOA3small,nrand=100,"biological_process")
[Package GoMiner version 1.0 Index]